
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.81.4078/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.81.4078/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/395707/LUSC-TP.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/LUSC-TP/3132702/1.GDAC_clinicalDataPicker.Finished/LUSC-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=327, in cluster file=178, common to both=178
[1] 123 178
[1] "CDKN2A MUTATION ANALYSIS"
[1] 3
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              26              152 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              26              152 
[1] "PIK3CA MUTATION ANALYSIS"
[1] 3
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              27              151 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              27              151 
[1] "NFE2L2 MUTATION ANALYSIS"
[1] 3
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
              27              151 
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
              27              151 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
           141             37 
  TP53 MUTATED TP53 WILD-TYPE 
           141             37 
[1] "TPTE MUTATION ANALYSIS"
[1] 3
  TPTE MUTATED TPTE WILD-TYPE 
            24            154 
  TPTE MUTATED TPTE WILD-TYPE 
            24            154 
[1] "KEAP1 MUTATION ANALYSIS"
[1] 3
  KEAP1 MUTATED KEAP1 WILD-TYPE 
             22             156 
  KEAP1 MUTATED KEAP1 WILD-TYPE 
             22             156 
[1] "SI MUTATION ANALYSIS"
[1] 3
  SI MUTATED SI WILD-TYPE 
          36          142 
  SI MUTATED SI WILD-TYPE 
          36          142 
[1] "PTEN MUTATION ANALYSIS"
[1] 3
  PTEN MUTATED PTEN WILD-TYPE 
            14            164 
  PTEN MUTATED PTEN WILD-TYPE 
            14            164 
[1] "TRIM58 MUTATION ANALYSIS"
[1] 3
  TRIM58 MUTATED TRIM58 WILD-TYPE 
              15              163 
  TRIM58 MUTATED TRIM58 WILD-TYPE 
              15              163 
[1] "OR5L2 MUTATION ANALYSIS"
[1] 3
  OR5L2 MUTATED OR5L2 WILD-TYPE 
             13             165 
  OR5L2 MUTATED OR5L2 WILD-TYPE 
             13             165 
[1] "FAM5C MUTATION ANALYSIS"
[1] 3
  FAM5C MUTATED FAM5C WILD-TYPE 
             27             151 
  FAM5C MUTATED FAM5C WILD-TYPE 
             27             151 
[1] "LRRC4C MUTATION ANALYSIS"
[1] 3
  LRRC4C MUTATED LRRC4C WILD-TYPE 
              17              161 
  LRRC4C MUTATED LRRC4C WILD-TYPE 
              17              161 
[1] "ZBBX MUTATION ANALYSIS"
[1] 3
  ZBBX MUTATED ZBBX WILD-TYPE 
            17            161 
  ZBBX MUTATED ZBBX WILD-TYPE 
            17            161 
[1] "DPPA4 MUTATION ANALYSIS"
[1] 3
  DPPA4 MUTATED DPPA4 WILD-TYPE 
             12             166 
  DPPA4 MUTATED DPPA4 WILD-TYPE 
             12             166 
[1] "ASB5 MUTATION ANALYSIS"
[1] 3
  ASB5 MUTATED ASB5 WILD-TYPE 
             9            169 
  ASB5 MUTATED ASB5 WILD-TYPE 
             9            169 
[1] "PDYN MUTATION ANALYSIS"
[1] 3
  PDYN MUTATED PDYN WILD-TYPE 
            10            168 
  PDYN MUTATED PDYN WILD-TYPE 
            10            168 
[1] "REG1B MUTATION ANALYSIS"
[1] 3
  REG1B MUTATED REG1B WILD-TYPE 
             11             167 
  REG1B MUTATED REG1B WILD-TYPE 
             11             167 
[1] "CYP11B1 MUTATION ANALYSIS"
[1] 3
  CYP11B1 MUTATED CYP11B1 WILD-TYPE 
               15               163 
  CYP11B1 MUTATED CYP11B1 WILD-TYPE 
               15               163 
[1] "CRB1 MUTATION ANALYSIS"
[1] 3
  CRB1 MUTATED CRB1 WILD-TYPE 
            23            155 
  CRB1 MUTATED CRB1 WILD-TYPE 
            23            155 
[1] "OR6F1 MUTATION ANALYSIS"
[1] 3
  OR6F1 MUTATED OR6F1 WILD-TYPE 
             13             165 
  OR6F1 MUTATED OR6F1 WILD-TYPE 
             13             165 
[1] "ESRRG MUTATION ANALYSIS"
[1] 3
  ESRRG MUTATED ESRRG WILD-TYPE 
             12             166 
  ESRRG MUTATED ESRRG WILD-TYPE 
             12             166 
[1] "OR2T33 MUTATION ANALYSIS"
[1] 3
  OR2T33 MUTATED OR2T33 WILD-TYPE 
              14              164 
  OR2T33 MUTATED OR2T33 WILD-TYPE 
              14              164 
[1] "OR2G6 MUTATION ANALYSIS"
[1] 3
  OR2G6 MUTATED OR2G6 WILD-TYPE 
             16             162 
  OR2G6 MUTATED OR2G6 WILD-TYPE 
             16             162 
[1] "USP29 MUTATION ANALYSIS"
[1] 3
  USP29 MUTATED USP29 WILD-TYPE 
             17             161 
  USP29 MUTATED USP29 WILD-TYPE 
             17             161 
[1] "REG3A MUTATION ANALYSIS"
[1] 3
  REG3A MUTATED REG3A WILD-TYPE 
             11             167 
  REG3A MUTATED REG3A WILD-TYPE 
             11             167 
[1] "PNLIPRP3 MUTATION ANALYSIS"
[1] 3
  PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE 
                12                166 
  PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE 
                12                166 
[1] "MAGEB2 MUTATION ANALYSIS"
[1] 3
  MAGEB2 MUTATED MAGEB2 WILD-TYPE 
               9              169 
  MAGEB2 MUTATED MAGEB2 WILD-TYPE 
               9              169 
[1] "SPHKAP MUTATION ANALYSIS"
[1] 3
  SPHKAP MUTATED SPHKAP WILD-TYPE 
              27              151 
  SPHKAP MUTATED SPHKAP WILD-TYPE 
              27              151 
[1] "CFHR4 MUTATION ANALYSIS"
[1] 3
  CFHR4 MUTATED CFHR4 WILD-TYPE 
             10             168 
  CFHR4 MUTATED CFHR4 WILD-TYPE 
             10             168 
[1] "CPS1 MUTATION ANALYSIS"
[1] 3
  CPS1 MUTATED CPS1 WILD-TYPE 
            25            153 
  CPS1 MUTATED CPS1 WILD-TYPE 
            25            153 
[1] "ELTD1 MUTATION ANALYSIS"
[1] 3
  ELTD1 MUTATED ELTD1 WILD-TYPE 
             18             160 
  ELTD1 MUTATED ELTD1 WILD-TYPE 
             18             160 
[1] "OR4M2 MUTATION ANALYSIS"
[1] 3
  OR4M2 MUTATED OR4M2 WILD-TYPE 
             14             164 
  OR4M2 MUTATED OR4M2 WILD-TYPE 
             14             164 
[1] "OR51B2 MUTATION ANALYSIS"
[1] 3
  OR51B2 MUTATED OR51B2 WILD-TYPE 
              10              168 
  OR51B2 MUTATED OR51B2 WILD-TYPE 
              10              168 
[1] "SLC13A1 MUTATION ANALYSIS"
[1] 3
  SLC13A1 MUTATED SLC13A1 WILD-TYPE 
               12               166 
  SLC13A1 MUTATED SLC13A1 WILD-TYPE 
               12               166 
[1] "TGIF2LX MUTATION ANALYSIS"
[1] 3
  TGIF2LX MUTATED TGIF2LX WILD-TYPE 
                9               169 
  TGIF2LX MUTATED TGIF2LX WILD-TYPE 
                9               169 
[1] "ASCL4 MUTATION ANALYSIS"
[1] 3
  ASCL4 MUTATED ASCL4 WILD-TYPE 
              6             172 
  ASCL4 MUTATED ASCL4 WILD-TYPE 
              6             172 
[1] "REG3G MUTATION ANALYSIS"
[1] 3
  REG3G MUTATED REG3G WILD-TYPE 
              8             170 
  REG3G MUTATED REG3G WILD-TYPE 
              8             170 
[1] "CBLN4 MUTATION ANALYSIS"
[1] 3
  CBLN4 MUTATED CBLN4 WILD-TYPE 
              5             173 
  CBLN4 MUTATED CBLN4 WILD-TYPE 
              5             173 
[1] "OR10G8 MUTATION ANALYSIS"
[1] 3
  OR10G8 MUTATED OR10G8 WILD-TYPE 
              10              168 
  OR10G8 MUTATED OR10G8 WILD-TYPE 
              10              168 
[1] "OR4M1 MUTATION ANALYSIS"
[1] 3
  OR4M1 MUTATED OR4M1 WILD-TYPE 
             13             165 
  OR4M1 MUTATED OR4M1 WILD-TYPE 
             13             165 
[1] "OR2T2 MUTATION ANALYSIS"
[1] 3
  OR2T2 MUTATED OR2T2 WILD-TYPE 
              7             171 
  OR2T2 MUTATED OR2T2 WILD-TYPE 
              7             171 
[1] "OR2T8 MUTATION ANALYSIS"
[1] 3
  OR2T8 MUTATED OR2T8 WILD-TYPE 
              8             170 
  OR2T8 MUTATED OR2T8 WILD-TYPE 
              8             170 
[1] "SPANXN1 MUTATION ANALYSIS"
[1] 3
  SPANXN1 MUTATED SPANXN1 WILD-TYPE 
                5               173 
  SPANXN1 MUTATED SPANXN1 WILD-TYPE 
                5               173 
[1] "C20ORF26 MUTATION ANALYSIS"
[1] 3
  C20ORF26 MUTATED C20ORF26 WILD-TYPE 
                20                158 
  C20ORF26 MUTATED C20ORF26 WILD-TYPE 
                20                158 
[1] "ZEB2 MUTATION ANALYSIS"
[1] 3
  ZEB2 MUTATED ZEB2 WILD-TYPE 
            15            163 
  ZEB2 MUTATED ZEB2 WILD-TYPE 
            15            163 
[1] "PSG6 MUTATION ANALYSIS"
[1] 3
  PSG6 MUTATED PSG6 WILD-TYPE 
             9            169 
  PSG6 MUTATED PSG6 WILD-TYPE 
             9            169 
[1] "REG1A MUTATION ANALYSIS"
[1] 3
  REG1A MUTATED REG1A WILD-TYPE 
             11             167 
  REG1A MUTATED REG1A WILD-TYPE 
             11             167 
[1] "CLSTN2 MUTATION ANALYSIS"
[1] 3
  CLSTN2 MUTATED CLSTN2 WILD-TYPE 
              17              161 
  CLSTN2 MUTATED CLSTN2 WILD-TYPE 
              17              161 
[1] "MTNR1B MUTATION ANALYSIS"
[1] 3
  MTNR1B MUTATED MTNR1B WILD-TYPE 
              10              168 
  MTNR1B MUTATED MTNR1B WILD-TYPE 
              10              168 
[1] "RB1 MUTATION ANALYSIS"
[1] 3
  RB1 MUTATED RB1 WILD-TYPE 
           12           166 
  RB1 MUTATED RB1 WILD-TYPE 
           12           166 
[1] "ZNF567 MUTATION ANALYSIS"
[1] 3
  ZNF567 MUTATED ZNF567 WILD-TYPE 
               3              175 
  ZNF567 MUTATED ZNF567 WILD-TYPE 
               3              175 
[1] "OR2A5 MUTATION ANALYSIS"
[1] 3
  OR2A5 MUTATED OR2A5 WILD-TYPE 
              8             170 
  OR2A5 MUTATED OR2A5 WILD-TYPE 
              8             170 
[1] "PARK2 MUTATION ANALYSIS"
[1] 3
  PARK2 MUTATED PARK2 WILD-TYPE 
             10             168 
  PARK2 MUTATED PARK2 WILD-TYPE 
             10             168 
[1] "HS6ST1 MUTATION ANALYSIS"
[1] 3
  HS6ST1 MUTATED HS6ST1 WILD-TYPE 
               5              173 
  HS6ST1 MUTATED HS6ST1 WILD-TYPE 
               5              173 
[1] "RNF144A MUTATION ANALYSIS"
[1] 3
  RNF144A MUTATED RNF144A WILD-TYPE 
                7               171 
  RNF144A MUTATED RNF144A WILD-TYPE 
                7               171 
[1] "CALN1 MUTATION ANALYSIS"
[1] 3
  CALN1 MUTATED CALN1 WILD-TYPE 
              9             169 
  CALN1 MUTATED CALN1 WILD-TYPE 
              9             169 
[1] "ZNF80 MUTATION ANALYSIS"
[1] 3
  ZNF80 MUTATED ZNF80 WILD-TYPE 
              7             171 
  ZNF80 MUTATED ZNF80 WILD-TYPE 
              7             171 
[1] "CLVS2 MUTATION ANALYSIS"
[1] 3
  CLVS2 MUTATED CLVS2 WILD-TYPE 
              9             169 
  CLVS2 MUTATED CLVS2 WILD-TYPE 
              9             169 
[1] "OR5M9 MUTATION ANALYSIS"
[1] 3
  OR5M9 MUTATED OR5M9 WILD-TYPE 
              8             170 
  OR5M9 MUTATED OR5M9 WILD-TYPE 
              8             170 
[1] "SLC17A8 MUTATION ANALYSIS"
[1] 3
  SLC17A8 MUTATED SLC17A8 WILD-TYPE 
               13               165 
  SLC17A8 MUTATED SLC17A8 WILD-TYPE 
               13               165 
[1] "TECRL MUTATION ANALYSIS"
[1] 3
  TECRL MUTATED TECRL WILD-TYPE 
              9             169 
  TECRL MUTATED TECRL WILD-TYPE 
              9             169 
[1] "OR4D5 MUTATION ANALYSIS"
[1] 3
  OR4D5 MUTATED OR4D5 WILD-TYPE 
              9             169 
  OR4D5 MUTATED OR4D5 WILD-TYPE 
              9             169 
[1] "POTEG MUTATION ANALYSIS"
[1] 3
  POTEG MUTATED POTEG WILD-TYPE 
             10             168 
  POTEG MUTATED POTEG WILD-TYPE 
             10             168 
[1] "TEX13A MUTATION ANALYSIS"
[1] 3
  TEX13A MUTATED TEX13A WILD-TYPE 
               8              170 
  TEX13A MUTATED TEX13A WILD-TYPE 
               8              170 
[1] "HIST2H2BE MUTATION ANALYSIS"
[1] 3
  HIST2H2BE MUTATED HIST2H2BE WILD-TYPE 
                  3                 175 
  HIST2H2BE MUTATED HIST2H2BE WILD-TYPE 
                  3                 175 
[1] "KCNJ3 MUTATION ANALYSIS"
[1] 3
  KCNJ3 MUTATED KCNJ3 WILD-TYPE 
             11             167 
  KCNJ3 MUTATED KCNJ3 WILD-TYPE 
             11             167 
[1] "NUCB2 MUTATION ANALYSIS"
[1] 3
  NUCB2 MUTATED NUCB2 WILD-TYPE 
              6             172 
  NUCB2 MUTATED NUCB2 WILD-TYPE 
              6             172 
[1] "TRHDE MUTATION ANALYSIS"
[1] 3
  TRHDE MUTATED TRHDE WILD-TYPE 
             14             164 
  TRHDE MUTATED TRHDE WILD-TYPE 
             14             164 
[1] "OR14A16 MUTATION ANALYSIS"
[1] 3
  OR14A16 MUTATED OR14A16 WILD-TYPE 
               10               168 
  OR14A16 MUTATED OR14A16 WILD-TYPE 
               10               168 
[1] "OR6K3 MUTATION ANALYSIS"
[1] 3
  OR6K3 MUTATED OR6K3 WILD-TYPE 
              8             170 
  OR6K3 MUTATED OR6K3 WILD-TYPE 
              8             170 
[1] "SLC6A5 MUTATION ANALYSIS"
[1] 3
  SLC6A5 MUTATED SLC6A5 WILD-TYPE 
               6              172 
  SLC6A5 MUTATED SLC6A5 WILD-TYPE 
               6              172 
[1] "OR2AK2 MUTATION ANALYSIS"
[1] 3
  OR2AK2 MUTATED OR2AK2 WILD-TYPE 
               8              170 
  OR2AK2 MUTATED OR2AK2 WILD-TYPE 
               8              170 
[1] "FAM5B MUTATION ANALYSIS"
[1] 3
  FAM5B MUTATED FAM5B WILD-TYPE 
             14             164 
  FAM5B MUTATED FAM5B WILD-TYPE 
             14             164 
[1] "OR10A4 MUTATION ANALYSIS"
[1] 3
  OR10A4 MUTATED OR10A4 WILD-TYPE 
               8              170 
  OR10A4 MUTATED OR10A4 WILD-TYPE 
               8              170 
[1] "OR8H1 MUTATION ANALYSIS"
[1] 3
  OR8H1 MUTATED OR8H1 WILD-TYPE 
              8             170 
  OR8H1 MUTATED OR8H1 WILD-TYPE 
              8             170 
[1] "PYHIN1 MUTATION ANALYSIS"
[1] 3
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
              11              167 
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
              11              167 
[1] "CNTNAP4 MUTATION ANALYSIS"
[1] 3
  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
               16               162 
  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
               16               162 
[1] "HRAS MUTATION ANALYSIS"
[1] 3
  HRAS MUTATED HRAS WILD-TYPE 
             5            173 
  HRAS MUTATED HRAS WILD-TYPE 
             5            173 
[1] "PRIM2 MUTATION ANALYSIS"
[1] 3
  PRIM2 MUTATED PRIM2 WILD-TYPE 
             13             165 
  PRIM2 MUTATED PRIM2 WILD-TYPE 
             13             165 
[1] "SPOPL MUTATION ANALYSIS"
[1] 3
  SPOPL MUTATED SPOPL WILD-TYPE 
              6             172 
  SPOPL MUTATED SPOPL WILD-TYPE 
              6             172 
[1] "GPC5 MUTATION ANALYSIS"
[1] 3
  GPC5 MUTATED GPC5 WILD-TYPE 
            11            167 
  GPC5 MUTATED GPC5 WILD-TYPE 
            11            167 
[1] "HLA-A MUTATION ANALYSIS"
[1] 3
  HLA-A MUTATED HLA-A WILD-TYPE 
              6             172 
  HLA-A MUTATED HLA-A WILD-TYPE 
              6             172 
[1] "OR5AC2 MUTATION ANALYSIS"
[1] 3
  OR5AC2 MUTATED OR5AC2 WILD-TYPE 
               7              171 
  OR5AC2 MUTATED OR5AC2 WILD-TYPE 
               7              171 
[1] "GABRA2 MUTATION ANALYSIS"
[1] 3
  GABRA2 MUTATED GABRA2 WILD-TYPE 
              12              166 
  GABRA2 MUTATED GABRA2 WILD-TYPE 
              12              166 
[1] "GBA3 MUTATION ANALYSIS"
[1] 3
  GBA3 MUTATED GBA3 WILD-TYPE 
             9            169 
  GBA3 MUTATED GBA3 WILD-TYPE 
             9            169 
[1] "KIRREL2 MUTATION ANALYSIS"
[1] 3
  KIRREL2 MUTATED KIRREL2 WILD-TYPE 
               11               167 
  KIRREL2 MUTATED KIRREL2 WILD-TYPE 
               11               167 
[1] "MS4A14 MUTATION ANALYSIS"
[1] 3
  MS4A14 MUTATED MS4A14 WILD-TYPE 
              12              166 
  MS4A14 MUTATED MS4A14 WILD-TYPE 
              12              166 
[1] "TMEM195 MUTATION ANALYSIS"
[1] 3
  TMEM195 MUTATED TMEM195 WILD-TYPE 
                8               170 
  TMEM195 MUTATED TMEM195 WILD-TYPE 
                8               170 
[1] "TMEM90A MUTATION ANALYSIS"
[1] 3
  TMEM90A MUTATED TMEM90A WILD-TYPE 
                4               174 
  TMEM90A MUTATED TMEM90A WILD-TYPE 
                4               174 
[1] "ZFP42 MUTATION ANALYSIS"
[1] 3
  ZFP42 MUTATED ZFP42 WILD-TYPE 
              8             170 
  ZFP42 MUTATED ZFP42 WILD-TYPE 
              8             170 
[1] "LEPROT MUTATION ANALYSIS"
[1] 3
  LEPROT MUTATED LEPROT WILD-TYPE 
               4              174 
  LEPROT MUTATED LEPROT WILD-TYPE 
               4              174 
[1] "LRRTM3 MUTATION ANALYSIS"
[1] 3
  LRRTM3 MUTATED LRRTM3 WILD-TYPE 
               8              170 
  LRRTM3 MUTATED LRRTM3 WILD-TYPE 
               8              170 
[1] "OR4N4 MUTATION ANALYSIS"
[1] 3
  OR4N4 MUTATED OR4N4 WILD-TYPE 
              9             169 
  OR4N4 MUTATED OR4N4 WILD-TYPE 
              9             169 
[1] "SNAI1 MUTATION ANALYSIS"
[1] 3
  SNAI1 MUTATED SNAI1 WILD-TYPE 
              4             174 
  SNAI1 MUTATED SNAI1 WILD-TYPE 
              4             174 
[1] "APOBEC1 MUTATION ANALYSIS"
[1] 3
  APOBEC1 MUTATED APOBEC1 WILD-TYPE 
                7               171 
  APOBEC1 MUTATED APOBEC1 WILD-TYPE 
                7               171 
[1] "BAGE2 MUTATION ANALYSIS"
[1] 3
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              3             175 
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              3             175 
[1] "CD5L MUTATION ANALYSIS"
[1] 3
  CD5L MUTATED CD5L WILD-TYPE 
             8            170 
  CD5L MUTATED CD5L WILD-TYPE 
             8            170 
[1] "LIN37 MUTATION ANALYSIS"
[1] 3
  LIN37 MUTATED LIN37 WILD-TYPE 
              3             175 
  LIN37 MUTATED LIN37 WILD-TYPE 
              3             175 
[1] "OR4C11 MUTATION ANALYSIS"
[1] 3
  OR4C11 MUTATED OR4C11 WILD-TYPE 
               7              171 
  OR4C11 MUTATED OR4C11 WILD-TYPE 
               7              171 
[1] "OR8K5 MUTATION ANALYSIS"
[1] 3
  OR8K5 MUTATED OR8K5 WILD-TYPE 
              6             172 
  OR8K5 MUTATED OR8K5 WILD-TYPE 
              6             172 
[1] "GABRG3 MUTATION ANALYSIS"
[1] 3
  GABRG3 MUTATED GABRG3 WILD-TYPE 
              10              168 
  GABRG3 MUTATED GABRG3 WILD-TYPE 
              10              168 
[1] "KRTAP10-7 MUTATION ANALYSIS"
[1] 3
  KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE 
                  7                 171 
  KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE 
                  7                 171 
[1] "UGT3A2 MUTATION ANALYSIS"
[1] 3
  UGT3A2 MUTATED UGT3A2 WILD-TYPE 
              10              168 
  UGT3A2 MUTATED UGT3A2 WILD-TYPE 
              10              168 
[1] "PRB2 MUTATION ANALYSIS"
[1] 3
  PRB2 MUTATED PRB2 WILD-TYPE 
             7            171 
  PRB2 MUTATED PRB2 WILD-TYPE 
             7            171 
[1] "HDAC9 MUTATION ANALYSIS"
[1] 3
  HDAC9 MUTATED HDAC9 WILD-TYPE 
             14             164 
  HDAC9 MUTATED HDAC9 WILD-TYPE 
             14             164 
[1] "HAO1 MUTATION ANALYSIS"
[1] 3
  HAO1 MUTATED HAO1 WILD-TYPE 
             7            171 
  HAO1 MUTATED HAO1 WILD-TYPE 
             7            171 
[1] "OR2T12 MUTATION ANALYSIS"
[1] 3
  OR2T12 MUTATED OR2T12 WILD-TYPE 
               8              170 
  OR2T12 MUTATED OR2T12 WILD-TYPE 
               8              170 
[1] "OR5AS1 MUTATION ANALYSIS"
[1] 3
  OR5AS1 MUTATED OR5AS1 WILD-TYPE 
               7              171 
  OR5AS1 MUTATED OR5AS1 WILD-TYPE 
               7              171 
[1] "SCN7A MUTATION ANALYSIS"
[1] 3
  SCN7A MUTATED SCN7A WILD-TYPE 
             14             164 
  SCN7A MUTATED SCN7A WILD-TYPE 
             14             164 
[1] "SNTG2 MUTATION ANALYSIS"
[1] 3
  SNTG2 MUTATED SNTG2 WILD-TYPE 
              8             170 
  SNTG2 MUTATED SNTG2 WILD-TYPE 
              8             170 
[1] "FRG2B MUTATION ANALYSIS"
[1] 3
  FRG2B MUTATED FRG2B WILD-TYPE 
              5             173 
  FRG2B MUTATED FRG2B WILD-TYPE 
              5             173 
[1] "OR8K3 MUTATION ANALYSIS"
[1] 3
  OR8K3 MUTATED OR8K3 WILD-TYPE 
              7             171 
  OR8K3 MUTATED OR8K3 WILD-TYPE 
              7             171 
[1] "OR5T1 MUTATION ANALYSIS"
[1] 3
  OR5T1 MUTATED OR5T1 WILD-TYPE 
             10             168 
  OR5T1 MUTATED OR5T1 WILD-TYPE 
             10             168 
[1] "FCAR MUTATION ANALYSIS"
[1] 3
  FCAR MUTATED FCAR WILD-TYPE 
             8            170 
  FCAR MUTATED FCAR WILD-TYPE 
             8            170 
[1] "OR2M7 MUTATION ANALYSIS"
[1] 3
  OR2M7 MUTATED OR2M7 WILD-TYPE 
              8             170 
  OR2M7 MUTATED OR2M7 WILD-TYPE 
              8             170 
[1] "CPXCR1 MUTATION ANALYSIS"
[1] 3
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               6              172 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               6              172 
[1] "COL6A6 MUTATION ANALYSIS"
[1] 3
  COL6A6 MUTATED COL6A6 WILD-TYPE 
              19              159 
  COL6A6 MUTATED COL6A6 WILD-TYPE 
              19              159 
[1] "GP2 MUTATION ANALYSIS"
[1] 3
  GP2 MUTATED GP2 WILD-TYPE 
           11           167 
  GP2 MUTATED GP2 WILD-TYPE 
           11           167 
[1] "CCDC85A MUTATION ANALYSIS"
[1] 3
  CCDC85A MUTATED CCDC85A WILD-TYPE 
                9               169 
  CCDC85A MUTATED CCDC85A WILD-TYPE 
                9               169 
[1] "OR2T3 MUTATION ANALYSIS"
[1] 3
  OR2T3 MUTATED OR2T3 WILD-TYPE 
              6             172 
  OR2T3 MUTATED OR2T3 WILD-TYPE 
              6             172 
[1] "EIF3E MUTATION ANALYSIS"
[1] 3
  EIF3E MUTATED EIF3E WILD-TYPE 
              5             173 
  EIF3E MUTATED EIF3E WILD-TYPE 
              5             173 
[1] "PRR23B MUTATION ANALYSIS"
[1] 3
  PRR23B MUTATED PRR23B WILD-TYPE 
               9              169 
  PRR23B MUTATED PRR23B WILD-TYPE 
               9              169 
[1] "RTN1 MUTATION ANALYSIS"
[1] 3
  RTN1 MUTATED RTN1 WILD-TYPE 
            12            166 
  RTN1 MUTATED RTN1 WILD-TYPE 
            12            166 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "KARNOFSKYPERFORMANCESCORE"             
[11] "HISTOLOGICALTYPE"                      
[12] "PATHOLOGICSPREAD(PT)"                  
[13] "PATHOLOGICSPREAD(PN)"                  
[14] "PATHOLOGICSPREAD(M)"                   
[15] "TUMORSTAGE"                            
[16] "RADIATIONS.RADIATION.REGIMENINDICATION"
[17] "NUMBERPACKYEARSSMOKED"                 
[18] "TOBACCOSMOKINGHISTORYINDICATOR"        
[19] "YEAROFTOBACCOSMOKINGONSET"             
[20] "COMPLETENESS.OF.RESECTION"             
[21] "BATCHNUMBER"                           

Input Data has 21 rows and 178 columns.

[1] "Batch" "21"   
[1] "Last Follow UP"
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
         370          136         2466         2417          146         1415 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
         345          396         1810          862          758           49 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
        1331          187           85         2753           92          826 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
        3516         1426         1852         1058          473          283 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
         962          908          656          329          223          131 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
          53          429          822          622         1067          734 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 
        1161         1057          399          587          358          964 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 
        1974         1932          444         1345           24         2170 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
         357          915         1912         1713          505         2524 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
        3469         2979         1311         5286         3149         4299 
TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 
         428           NA           80         1874          999         1528 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
        1575          994           NA          329          235          428 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
         698          168           NA          120           13          238 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
         207           12          103         2253         1360         2086 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
          NA         2130         1848           52          740           59 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
         832          474         1084           24          544          550 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
         352          573          258          213          183           85 
TCGA-43-6771 TCGA-46-3765 TCGA-46-3766 TCGA-46-3767 TCGA-46-3768 TCGA-46-3769 
          NA           NA           NA           NA           NA           NA 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 
          29           18           12           12           63          880 
TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 
           3           NA           62           31          311          660 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
        2082         1505         1685          888          274         1456 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
        1075          931           96          793          733          693 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-63-5128 TCGA-63-5131 TCGA-63-6202 
          37          719          358           NA           NA           NA 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
         516         1311          641           30           61           28 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
          30           30          638          761           30           61 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
          31           61           61          700          578           92 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
          61          578          366          121          365          759 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
          59          790         1217          699          123          153 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-70-6722 
         913          306         1645          122         1492           NA 
TCGA-70-6723 TCGA-85-6175 TCGA-85-6560 TCGA-85-6561 
          NA           NA           11           24 
Variable 1:'AGE':	nDistinctValues=37,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=69,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=142,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=15,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=128,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=7,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 11:'HISTOLOGICAL.TYPE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'PATHOLOGY.T':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'PATHOLOGY.N':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'PATHOLOGICSPREAD(M)':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'TUMOR.STAGE':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'NUMBERPACKYEARSSMOKED':	nDistinctValues=56,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 18:'TOBACCOSMOKINGHISTORYINDICATOR':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 19:'YEAROFTOBACCOSMOKINGONSET':	nDistinctValues=40,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 20:'COMPLETENESS.OF.RESECTION':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 21:'BATCH.NUMBER':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "GENDER"                                
 [3] "KARNOFSKY.PERFORMANCE.SCORE"           
 [4] "HISTOLOGICAL.TYPE"                     
 [5] "PATHOLOGY.T"                           
 [6] "PATHOLOGY.N"                           
 [7] "PATHOLOGICSPREAD(M)"                   
 [8] "TUMOR.STAGE"                           
 [9] "RADIATIONS.RADIATION.REGIMENINDICATION"
[10] "NUMBERPACKYEARSSMOKED"                 
[11] "TOBACCOSMOKINGHISTORYINDICATOR"        
[12] "YEAROFTOBACCOSMOKINGONSET"             
[13] "COMPLETENESS.OF.RESECTION"             
[1] "TUMOR.?STAGE" "8"           
[1] "stage2"
vv
 1  2  3  4 
97 38 38  3 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "5"          
[1] "PATHOLOGY.N" "6"          
Output Data has 178 columns, 1 survival variables, and 13 non-survival variables.
AGE, nv=37, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=7, binary=FALSE, numeric=TRUE
HISTOLOGICAL.TYPE, nv=3, binary=FALSE, numeric=FALSE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
 36 116  14  12 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
 36 116  14  12 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
 T1  T2  T3  T4 
 36 116  14  12 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
 36 116  14  12 
PATHOLOGY.N, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
 N0  N1  N2  N3 
117  39  17   5 
[1] "table(vv)"
vv
 N0  N1  N2  N3 
117  39  17   5 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
 N0  N1  N2  N3 
117  39  17   5 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 N0  N1  N2  N3 
117  39  17   5 
PATHOLOGICSPREAD(M), nv=3, binary=FALSE, numeric=FALSE
TUMOR.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('TUMOR.?STAGE$',vnm)"
vv
  I  II III  IV 
 97  38  38   3 
[1] "table(vv)"
vv
     I     II III+IV 
    97     38     41 
$ClinVariableName
[1] "TUMOR.STAGE"

$Table
vv
  I  II III  IV 
 97  38  38   3 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


     I     II III+IV 
    97     38     41 
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NUMBERPACKYEARSSMOKED, nv=56, binary=FALSE, numeric=TRUE
TOBACCOSMOKINGHISTORYINDICATOR, nv=4, binary=FALSE, numeric=FALSE
YEAROFTOBACCOSMOKINGONSET, nv=40, binary=FALSE, numeric=TRUE
COMPLETENESS.OF.RESECTION, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = CDKN2A MUTATION ANALYSIS
D1V1, survival
                  sevent
clus2               0  1
  CDKN2A MUTATED   11 14
  CDKN2A WILD-TYPE 86 56
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              25              142 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              14               56 
$`CDKN2A MUTATED`
TCGA-18-3407 TCGA-18-3411 TCGA-18-3412 TCGA-18-3416 TCGA-21-5786 TCGA-21-5787 
        4.47        46.52        11.34        28.34        21.57        10.82 
TCGA-22-1012 TCGA-22-4593 TCGA-22-4599 TCGA-22-5477 TCGA-22-5492 TCGA-33-4538 
       14.10        35.08        38.17        44.22        16.60        97.94 
TCGA-34-2596 TCGA-34-5231 TCGA-37-4135 TCGA-39-5027 TCGA-39-5028 TCGA-43-3394 
        2.63        50.24         6.81        60.76         1.71        11.57 
TCGA-51-4080 TCGA-60-2698 TCGA-60-2725 TCGA-60-2726 TCGA-66-2786 TCGA-66-2787 
        0.39        10.22        23.64        11.77        25.97        40.01 
TCGA-66-2792 
       30.02 

$`CDKN2A WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 TCGA-18-3415 
       12.16        81.07        79.46         4.80        13.02        59.51 
TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 
       24.92         1.61        43.76         6.15         2.79        90.51 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 
        3.02        27.16       115.59        46.88        60.89        34.78 
TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-22-0944 TCGA-22-1002 
       15.55         9.30        31.63        29.85         7.33         4.31 
TCGA-22-1011 TCGA-22-1016 TCGA-22-4591 TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 
        1.74        27.02        20.45        24.13        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
        0.79        71.34        11.74        30.08        62.86        56.32 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
       82.98       114.05        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-6737 TCGA-34-2600 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 
       14.07        19.76        61.61        32.84        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4141 TCGA-37-5819 
        4.96         3.95         0.43         7.82         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5029 
       74.07        44.71        68.58        55.17        70.03        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       18.08        18.84         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 
        5.42         9.96         0.95         0.59         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 
       28.93         0.10         2.04         1.02        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       30.61         3.16        26.07        24.10        22.78         1.22 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2793 TCGA-66-2794 
        1.94        22.98         4.04         5.03        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  CDKN2A MUTATED CDKN2A WILD-TYPE 
            0.39             0.10 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
           97.94           173.79 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
           21.57            17.42 
[1] "0.4 - 97.9 (21.6)"  "0.1 - 173.8 (17.4)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
  "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
  "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
  "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
[1] "hr=" "1.4"
D1V2, continuous
D1V3, binary
                  cls
clus                 0   1
  CDKN2A MUTATED     6  20
  CDKN2A WILD-TYPE  41 111
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CDKN2A MUTATED      6   20
  CDKN2A WILD-TYPE   41  111
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  FEMALE              6               41
  MALE               20              111
D1V4, continuous
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  CDKN2A MUTATED                                       1
  CDKN2A WILD-TYPE                                     4
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  CDKN2A MUTATED                                        0
  CDKN2A WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CDKN2A MUTATED                                                            25
  CDKN2A WILD-TYPE                                                         147
D1V5, multiclass
                                                             clus
vv                                                            CDKN2A MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             25
                                                             clus
vv                                                            CDKN2A WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              147
                  vv
clus               T1 T2 T3 T4
  CDKN2A MUTATED    5 19  0  2
  CDKN2A WILD-TYPE 31 97 14 10
D1V6, multiclass
    clus
vv   CDKN2A MUTATED CDKN2A WILD-TYPE
  T1              5               31
  T2             19               97
  T3              0               14
  T4              2               10
                  vv
clus                N0  N1  N2  N3
  CDKN2A MUTATED    15   7   4   0
  CDKN2A WILD-TYPE 102  32  13   5
D1V7, multiclass
    clus
vv   CDKN2A MUTATED CDKN2A WILD-TYPE
  N0             15              102
  N1              7               32
  N2              4               13
  N3              0                5
                  vv
clus                M0  M1  MX
  CDKN2A MUTATED    25   0   0
  CDKN2A WILD-TYPE 140   3   6
D1V8, multiclass
    clus
vv   CDKN2A MUTATED CDKN2A WILD-TYPE
  M0             25              140
  M1              0                3
  MX              0                6
                  vv
clus                I II III+IV
  CDKN2A MUTATED   13  6      7
  CDKN2A WILD-TYPE 84 32     34
D1V9, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  I                  13               84
  II                  6               32
  III+IV              7               34
D1V10, binary
                  cls
clus                 0   1
  CDKN2A MUTATED     1  25
  CDKN2A WILD-TYPE   3 149
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CDKN2A MUTATED      1   25
  CDKN2A WILD-TYPE    3  149
     clus
vv    CDKN2A MUTATED CDKN2A WILD-TYPE
  NO               1                3
  YES             25              149
D1V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  CDKN2A MUTATED                                            11
  CDKN2A WILD-TYPE                                          83
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  CDKN2A MUTATED                                        7              7
  CDKN2A WILD-TYPE                                     36             21
                  vv
clus               LIFELONG NON-SMOKER
  CDKN2A MUTATED                     1
  CDKN2A WILD-TYPE                   7
D1V12, multiclass
                                             clus
vv                                            CDKN2A MUTATED CDKN2A WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             11               83
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   7               36
  CURRENT SMOKER                                           7               21
  LIFELONG NON-SMOKER                                      1                7
D1V13, continuous
                  vv
clus                R0  R1  R2  RX
  CDKN2A MUTATED    23   0   0   2
  CDKN2A WILD-TYPE 124   2   4   8
D1V14, multiclass
    clus
vv   CDKN2A MUTATED CDKN2A WILD-TYPE
  R0             23              124
  R1              0                2
  R2              0                4
  RX              2                8

Clustering(2) Variable = PIK3CA MUTATION ANALYSIS
D2V1, survival
                  sevent
clus2               0  1
  PIK3CA MUTATED   11 14
  PIK3CA WILD-TYPE 86 56
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              25              142 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              14               56 
$`PIK3CA MUTATED`
TCGA-18-3407 TCGA-18-3410 TCGA-18-3414 TCGA-18-5595 TCGA-21-1071 TCGA-21-1078 
        4.47         4.80        13.02        27.16        46.88        15.55 
TCGA-21-5782 TCGA-22-4613 TCGA-22-5473 TCGA-22-5489 TCGA-22-5491 TCGA-33-4547 
       31.63        11.77        63.52        62.86        56.32        43.10 
TCGA-33-4583 TCGA-34-5232 TCGA-37-3783 TCGA-37-5819 TCGA-51-4079 TCGA-60-2724 
      141.34        51.78         3.95         3.39         0.39         1.22 
TCGA-60-2726 TCGA-66-2755 TCGA-66-2759 TCGA-66-2766 TCGA-66-2773 TCGA-66-2785 
       11.77         0.92        25.02         1.02         3.02         1.94 
TCGA-85-6560 
        0.36 

$`PIK3CA WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 TCGA-18-3415 
       12.16        81.07        79.46        46.52        11.34        59.51 
TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       28.34        24.92         1.61        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-21-1070 TCGA-21-1076 TCGA-21-1077 TCGA-21-1081 
       90.51         3.02       115.59        60.89        34.78         9.30 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 
       34.75        13.12        19.30        31.69        64.90        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5492 
       44.22         0.79        71.34        11.74        30.08        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 
       82.98       114.05        97.94       173.79       103.53        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5234 
       19.76         2.63        61.61        32.84        50.24        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5016 
        4.96         0.43         7.82         6.81         0.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
       24.10        22.78        23.64        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2763 
        0.99         2.01         0.99         0.99        20.98         0.99 
TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 
        2.01         2.01         2.01        23.01        19.00         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 
       19.00        12.03         3.98        12.00        24.95        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6561 
       54.08         4.01        49.05         0.79 

  PIK3CA MUTATED PIK3CA WILD-TYPE 
            0.36             0.10 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
          141.34           173.79 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
           11.77            18.92 
[1] "0.4 - 141.3 (11.8)" "0.1 - 173.8 (18.9)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
[1] "hr=" "1.6"
D2V2, continuous
D2V3, binary
                  cls
clus                 0   1
  PIK3CA MUTATED     4  23
  PIK3CA WILD-TYPE  43 108
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3CA MUTATED      4   23
  PIK3CA WILD-TYPE   43  108
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  FEMALE              4               43
  MALE               23              108
D2V4, continuous
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  PIK3CA MUTATED                                       0
  PIK3CA WILD-TYPE                                     5
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  PIK3CA MUTATED                                        0
  PIK3CA WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PIK3CA MUTATED                                                            27
  PIK3CA WILD-TYPE                                                         145
D2V5, multiclass
                                                             clus
vv                                                            PIK3CA MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             27
                                                             clus
vv                                                            PIK3CA WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              145
                  vv
clus                T1  T2  T3  T4
  PIK3CA MUTATED     6  15   5   1
  PIK3CA WILD-TYPE  30 101   9  11
D2V6, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  T1              6               30
  T2             15              101
  T3              5                9
  T4              1               11
                  vv
clus                N0  N1  N2  N3
  PIK3CA MUTATED    17   6   4   0
  PIK3CA WILD-TYPE 100  33  13   5
D2V7, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  N0             17              100
  N1              6               33
  N2              4               13
  N3              0                5
                  vv
clus                M0  M1  MX
  PIK3CA MUTATED    25   1   0
  PIK3CA WILD-TYPE 140   2   6
D2V8, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  M0             25              140
  M1              1                2
  MX              0                6
                  vv
clus                I II III+IV
  PIK3CA MUTATED   16  2      9
  PIK3CA WILD-TYPE 81 36     32
D2V9, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  I                  16               81
  II                  2               36
  III+IV              9               32
D2V10, binary
                  cls
clus                 0   1
  PIK3CA MUTATED     0  27
  PIK3CA WILD-TYPE   4 147
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3CA MUTATED      0   27
  PIK3CA WILD-TYPE    4  147
     clus
vv    PIK3CA MUTATED PIK3CA WILD-TYPE
  NO               0                4
  YES             27              147
D2V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  PIK3CA MUTATED                                            11
  PIK3CA WILD-TYPE                                          83
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  PIK3CA MUTATED                                       10              2
  PIK3CA WILD-TYPE                                     33             26
                  vv
clus               LIFELONG NON-SMOKER
  PIK3CA MUTATED                     2
  PIK3CA WILD-TYPE                   6
D2V12, multiclass
                                             clus
vv                                            PIK3CA MUTATED PIK3CA WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             11               83
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  10               33
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      2                6
D2V13, continuous
                  vv
clus                R0  R1  R2  RX
  PIK3CA MUTATED    25   0   0   1
  PIK3CA WILD-TYPE 122   2   4   9
D2V14, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  R0             25              122
  R1              0                2
  R2              0                4
  RX              1                9

Clustering(3) Variable = NFE2L2 MUTATION ANALYSIS
D3V1, survival
                  sevent
clus2               0  1
  NFE2L2 MUTATED   14 12
  NFE2L2 WILD-TYPE 83 58
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
              26              141 
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
              12               58 
$`NFE2L2 MUTATED`
TCGA-18-3411 TCGA-18-3415 TCGA-18-4721 TCGA-18-5592 TCGA-21-1071 TCGA-22-5473 
       46.52        59.51        90.51         3.02        46.88        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5482 TCGA-33-4586 TCGA-34-2596 TCGA-34-2608 
       14.60        44.22        11.74        14.07         2.63        32.84 
TCGA-34-5236 TCGA-34-5240 TCGA-37-4135 TCGA-39-5022 TCGA-46-3768 TCGA-51-4079 
        9.04         7.73         6.81        55.17         9.96         0.39 
TCGA-51-4081 TCGA-56-5897 TCGA-60-2709 TCGA-66-2766 TCGA-66-2770 TCGA-66-2783 
        2.07         0.10        49.48         1.02        23.01        24.95 
TCGA-66-2787 TCGA-66-2795 
       40.01         4.01 

$`NFE2L2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 
       12.16         4.47        81.07        79.46         4.80        11.34 
TCGA-18-3414 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       13.02        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-5595 TCGA-21-1070 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
        2.79        27.16       115.59        60.89        34.78        15.55 
TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 
        9.30        31.63        29.85        21.57        10.82         7.33 
TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 
        4.31         1.74        14.10        27.02        20.45        35.08 
TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 
       24.13        38.17        34.75        13.12        19.30        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5478 TCGA-22-5480 TCGA-22-5485 TCGA-22-5489 
       31.69        64.90         0.79        71.34        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-6737 TCGA-34-2600 TCGA-34-5231 
      173.79       103.53       141.34        19.76        61.61        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
       51.78        32.68        10.82        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4141 TCGA-37-5819 
        4.96         3.95         0.43         7.82         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       74.07        44.71        68.58        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-6025 TCGA-46-6026 TCGA-51-4080 
        6.02         2.79         5.42         0.95         0.59         0.39 
TCGA-56-1622 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 
       28.93         2.04         1.02        10.22        21.70        68.45 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01         2.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 
       19.00        12.03         3.98        12.00         1.94        25.97 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
            0.10             0.36 
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
           90.51           173.79 
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
          14.335           18.080 
[1] "0.1 - 90.5 (14.3)"  "0.4 - 173.8 (18.1)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
  "NFE2L2 MUTATED"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
  "NFE2L2 MUTATED"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
  "NFE2L2 MUTATED"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
[1] "hr=" "1.2"
D3V2, continuous
D3V3, binary
                  cls
clus                 0   1
  NFE2L2 MUTATED     4  23
  NFE2L2 WILD-TYPE  43 108
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NFE2L2 MUTATED      4   23
  NFE2L2 WILD-TYPE   43  108
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  FEMALE              4               43
  MALE               23              108
D3V4, continuous
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  NFE2L2 MUTATED                                       1
  NFE2L2 WILD-TYPE                                     4
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  NFE2L2 MUTATED                                        0
  NFE2L2 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  NFE2L2 MUTATED                                                            26
  NFE2L2 WILD-TYPE                                                         146
D3V5, multiclass
                                                             clus
vv                                                            NFE2L2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             26
                                                             clus
vv                                                            NFE2L2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              146
                  vv
clus               T1 T2 T3 T4
  NFE2L2 MUTATED    5 17  4  1
  NFE2L2 WILD-TYPE 31 99 10 11
D3V6, multiclass
    clus
vv   NFE2L2 MUTATED NFE2L2 WILD-TYPE
  T1              5               31
  T2             17               99
  T3              4               10
  T4              1               11
                  vv
clus               N0 N1 N2 N3
  NFE2L2 MUTATED   18  5  3  1
  NFE2L2 WILD-TYPE 99 34 14  4
D3V7, multiclass
    clus
vv   NFE2L2 MUTATED NFE2L2 WILD-TYPE
  N0             18               99
  N1              5               34
  N2              3               14
  N3              1                4
                  vv
clus                M0  M1  MX
  NFE2L2 MUTATED    24   0   2
  NFE2L2 WILD-TYPE 141   3   4
D3V8, multiclass
    clus
vv   NFE2L2 MUTATED NFE2L2 WILD-TYPE
  M0             24              141
  M1              0                3
  MX              2                4
                  vv
clus                I II III+IV
  NFE2L2 MUTATED   15  5      7
  NFE2L2 WILD-TYPE 82 33     34
D3V9, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  I                  15               82
  II                  5               33
  III+IV              7               34
D3V10, binary
                  cls
clus                 0   1
  NFE2L2 MUTATED     0  27
  NFE2L2 WILD-TYPE   4 147
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NFE2L2 MUTATED      0   27
  NFE2L2 WILD-TYPE    4  147
     clus
vv    NFE2L2 MUTATED NFE2L2 WILD-TYPE
  NO               0                4
  YES             27              147
D3V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  NFE2L2 MUTATED                                            11
  NFE2L2 WILD-TYPE                                          83
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  NFE2L2 MUTATED                                        8              7
  NFE2L2 WILD-TYPE                                     35             21
                  vv
clus               LIFELONG NON-SMOKER
  NFE2L2 MUTATED                     0
  NFE2L2 WILD-TYPE                   8
D3V12, multiclass
                                             clus
vv                                            NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             11               83
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   8               35
  CURRENT SMOKER                                           7               21
  LIFELONG NON-SMOKER                                      0                8
D3V13, continuous
                  vv
clus                R0  R1  R2  RX
  NFE2L2 MUTATED    22   0   1   0
  NFE2L2 WILD-TYPE 125   2   3  10
D3V14, multiclass
    clus
vv   NFE2L2 MUTATED NFE2L2 WILD-TYPE
  R0             22              125
  R1              0                2
  R2              1                3
  RX              0               10

Clustering(4) Variable = TP53 MUTATION ANALYSIS
D4V1, survival
                sevent
clus2             0  1
  TP53 MUTATED   83 51
  TP53 WILD-TYPE 14 19
  TP53 MUTATED TP53 WILD-TYPE 
           134             33 
  TP53 MUTATED TP53 WILD-TYPE 
            51             19 
$`TP53 MUTATED`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        28.34         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-5592 TCGA-21-1076 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 
        2.79         3.02        60.89        31.63        29.85        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4593 
       10.82         7.33         1.74        14.10        27.02        35.08 
TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 
       24.13        38.17        34.75        13.12        19.30        11.77 
TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 
       31.69        63.52        14.60        44.22         0.79        71.34 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       11.74        30.08        62.86        56.32        16.60        82.98 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
      114.05        97.94        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5232 
       14.07        19.76         2.63        61.61        32.84        51.78 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
        9.04        10.82         7.73        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       74.07        44.71        68.58        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-43-3394 
       24.33        27.35        15.58        35.64         0.79        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6770 TCGA-46-3768 TCGA-46-6025 
       18.84         8.48         7.00         2.79         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2710 
        2.04         1.02        10.22        21.70        68.45        55.40 
TCGA-60-2711 TCGA-60-2713 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       29.19        47.87        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
       22.78         1.22        16.96        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2777 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
        2.01        12.00        24.95        25.97        40.01        22.98 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

$`TP53 WILD-TYPE`
TCGA-18-3412 TCGA-18-3417 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
       11.34        24.92        90.51        27.16       115.59        46.88 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-22-1002 TCGA-22-4591 TCGA-22-5472 
       34.78        15.55         9.30         4.31        20.45        64.90 
TCGA-34-5231 TCGA-34-5234 TCGA-34-5241 TCGA-39-5022 TCGA-39-5030 TCGA-39-5039 
       50.24        32.68        14.07        55.17         1.94        17.88 
TCGA-43-2578 TCGA-43-6647 TCGA-43-6771 TCGA-60-2709 TCGA-60-2712 TCGA-60-2715 
       18.08         6.02         5.42        49.48         9.01        35.34 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 
       23.64        11.77        19.00         3.02        19.00        12.03 
TCGA-66-2781 TCGA-66-2785 TCGA-66-2789 
        3.98         1.94         4.04 

  TP53 MUTATED TP53 WILD-TYPE 
          0.10           1.94 
  TP53 MUTATED TP53 WILD-TYPE 
        173.79         115.59 
  TP53 MUTATED TP53 WILD-TYPE 
         16.78          18.08 
[1] "0.1 - 173.8 (16.8)" "1.9 - 115.6 (18.1)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
[1] "hr=" "1.5"
D4V2, continuous
D4V3, binary
                cls
clus               0   1
  TP53 MUTATED    37 104
  TP53 WILD-TYPE  10  27
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED     37  104
  TP53 WILD-TYPE   10   27
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  FEMALE           37             10
  MALE            104             27
D4V4, continuous
                vv
clus             LUNG BASALOID SQUAMOUS CELL CARCINOMA
  TP53 MUTATED                                       5
  TP53 WILD-TYPE                                     0
                vv
clus             LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  TP53 MUTATED                                        1
  TP53 WILD-TYPE                                      0
                vv
clus             LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TP53 MUTATED                                                           135
  TP53 WILD-TYPE                                                          37
D4V5, multiclass
                                                             clus
vv                                                            TP53 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)          135
                                                             clus
vv                                                            TP53 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             37
                vv
clus             T1 T2 T3 T4
  TP53 MUTATED   27 92 10 12
  TP53 WILD-TYPE  9 24  4  0
D4V6, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  T1           27              9
  T2           92             24
  T3           10              4
  T4           12              0
                vv
clus             N0 N1 N2 N3
  TP53 MUTATED   92 31 15  3
  TP53 WILD-TYPE 25  8  2  2
D4V7, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  N0           92             25
  N1           31              8
  N2           15              2
  N3            3              2
                vv
clus              M0  M1  MX
  TP53 MUTATED   132   2   3
  TP53 WILD-TYPE  33   1   3
D4V8, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  M0          132             33
  M1            2              1
  MX            3              3
                vv
clus              I II III+IV
  TP53 MUTATED   75 30     34
  TP53 WILD-TYPE 22  8      7
D4V9, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  I                75             22
  II               30              8
  III+IV           34              7
D4V10, binary
                cls
clus               0   1
  TP53 MUTATED     4 137
  TP53 WILD-TYPE   0  37
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED      4  137
  TP53 WILD-TYPE    0   37
     clus
vv    TP53 MUTATED TP53 WILD-TYPE
  NO             4              0
  YES          137             37
D4V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  TP53 MUTATED                                            76
  TP53 WILD-TYPE                                          18
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  TP53 MUTATED                                       32             24
  TP53 WILD-TYPE                                     11              4
                vv
clus             LIFELONG NON-SMOKER
  TP53 MUTATED                     4
  TP53 WILD-TYPE                   4
D4V12, multiclass
                                             clus
vv                                            TP53 MUTATED TP53 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           76             18
  CURRENT REFORMED SMOKER FOR > 15 YEARS                32             11
  CURRENT SMOKER                                        24              4
  LIFELONG NON-SMOKER                                    4              4
D4V13, continuous
                vv
clus              R0  R1  R2  RX
  TP53 MUTATED   117   2   3   6
  TP53 WILD-TYPE  30   0   1   4
D4V14, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  R0          117             30
  R1            2              0
  R2            3              1
  RX            6              4

Clustering(5) Variable = TPTE MUTATION ANALYSIS
D5V1, survival
                sevent
clus2             0  1
  TPTE MUTATED   14  8
  TPTE WILD-TYPE 83 62
  TPTE MUTATED TPTE WILD-TYPE 
            22            145 
  TPTE MUTATED TPTE WILD-TYPE 
             8             62 
$`TPTE MUTATED`
TCGA-18-3409 TCGA-18-3410 TCGA-18-3416 TCGA-18-3421 TCGA-18-5592 TCGA-22-4599 
       79.46         4.80        28.34        43.76         3.02        38.17 
TCGA-22-4613 TCGA-22-5473 TCGA-22-5482 TCGA-22-5492 TCGA-39-5016 TCGA-43-5668 
       11.77        63.52        11.74        16.60        74.07         8.48 
TCGA-46-6026 TCGA-51-4080 TCGA-56-6545 TCGA-60-2722 TCGA-60-2726 TCGA-66-2742 
        0.59         0.39         2.04        24.10        11.77        21.07 
TCGA-66-2757 TCGA-66-2766 TCGA-66-2783 TCGA-66-2795 
        0.99         1.02        24.95         4.01 

$`TPTE WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
       12.16         4.47        81.07        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 
       59.51        24.92         1.61         6.15         2.79        90.51 
TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       27.16       115.59        46.88        60.89        34.78        15.55 
TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 
        9.30        31.63        29.85        21.57        10.82         7.33 
TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 
        4.31         1.74        14.10        27.02        20.45        35.08 
TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 
       24.13        34.75        13.12        19.30        31.69        64.90 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5485 TCGA-22-5489 
       14.60        44.22         0.79        71.34        30.08        62.86 
TCGA-22-5491 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       56.32        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5019 
        0.43         7.82         6.81         0.39         3.39        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       18.08        11.57        18.84         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-51-4081 TCGA-56-1622 
        5.42         9.96         0.95         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        0.10         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 
        3.16        26.07        22.78         1.22        23.64        16.96 
TCGA-66-2734 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 
       43.10         0.99         2.01         0.92         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
       25.02         0.99         2.01         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       12.00         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 TCGA-85-6560 
        5.03        30.02        10.06        54.08        49.05         0.36 
TCGA-85-6561 
        0.79 

  TPTE MUTATED TPTE WILD-TYPE 
          0.39           0.10 
  TPTE MUTATED TPTE WILD-TYPE 
         79.46         173.79 
  TPTE MUTATED TPTE WILD-TYPE 
         11.77          18.84 
[1] "0.4 - 79.5 (11.8)"  "0.1 - 173.8 (18.8)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
[1] "hr=" "1"  
D5V2, continuous
D5V3, binary
                cls
clus               0   1
  TPTE MUTATED     6  18
  TPTE WILD-TYPE  41 113
[1] "tbl2"
                cls
clus             [,1] [,2]
  TPTE MUTATED      6   18
  TPTE WILD-TYPE   41  113
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  FEMALE            6             41
  MALE             18            113
D5V4, continuous
                vv
clus             LUNG BASALOID SQUAMOUS CELL CARCINOMA
  TPTE MUTATED                                       3
  TPTE WILD-TYPE                                     2
                vv
clus             LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  TPTE MUTATED                                        0
  TPTE WILD-TYPE                                      1
                vv
clus             LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TPTE MUTATED                                                            21
  TPTE WILD-TYPE                                                         151
D5V5, multiclass
                                                             clus
vv                                                            TPTE MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)           21
                                                             clus
vv                                                            TPTE WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            151
                vv
clus              T1  T2  T3  T4
  TPTE MUTATED     5  13   3   3
  TPTE WILD-TYPE  31 103  11   9
D5V6, multiclass
    clus
vv   TPTE MUTATED TPTE WILD-TYPE
  T1            5             31
  T2           13            103
  T3            3             11
  T4            3              9
                vv
clus              N0  N1  N2  N3
  TPTE MUTATED    12   9   2   1
  TPTE WILD-TYPE 105  30  15   4
D5V7, multiclass
    clus
vv   TPTE MUTATED TPTE WILD-TYPE
  N0           12            105
  N1            9             30
  N2            2             15
  N3            1              4
                vv
clus              M0  M1  MX
  TPTE MUTATED    22   1   0
  TPTE WILD-TYPE 143   2   6
D5V8, multiclass
    clus
vv   TPTE MUTATED TPTE WILD-TYPE
  M0           22            143
  M1            1              2
  MX            0              6
                vv
clus              I II III+IV
  TPTE MUTATED    8  8      7
  TPTE WILD-TYPE 89 30     34
D5V9, multiclass
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  I                 8             89
  II                8             30
  III+IV            7             34
D5V10, binary
                cls
clus               0   1
  TPTE MUTATED     1  23
  TPTE WILD-TYPE   3 151
[1] "tbl2"
                cls
clus             [,1] [,2]
  TPTE MUTATED      1   23
  TPTE WILD-TYPE    3  151
     clus
vv    TPTE MUTATED TPTE WILD-TYPE
  NO             1              3
  YES           23            151
D5V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  TPTE MUTATED                                            13
  TPTE WILD-TYPE                                          81
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  TPTE MUTATED                                        9              2
  TPTE WILD-TYPE                                     34             26
                vv
clus             LIFELONG NON-SMOKER
  TPTE MUTATED                     0
  TPTE WILD-TYPE                   8
D5V12, multiclass
                                             clus
vv                                            TPTE MUTATED TPTE WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           13             81
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 9             34
  CURRENT SMOKER                                         2             26
  LIFELONG NON-SMOKER                                    0              8
D5V13, continuous
                vv
clus              R0  R1  R2  RX
  TPTE MUTATED    20   1   2   0
  TPTE WILD-TYPE 127   1   2  10
D5V14, multiclass
    clus
vv   TPTE MUTATED TPTE WILD-TYPE
  R0           20            127
  R1            1              1
  R2            2              2
  RX            0             10

Clustering(6) Variable = KEAP1 MUTATION ANALYSIS
D6V1, survival
                 sevent
clus2              0  1
  KEAP1 MUTATED   16  6
  KEAP1 WILD-TYPE 81 64
  KEAP1 MUTATED KEAP1 WILD-TYPE 
             22             145 
  KEAP1 MUTATED KEAP1 WILD-TYPE 
              6              64 
$`KEAP1 MUTATED`
TCGA-18-3407 TCGA-18-3409 TCGA-18-5595 TCGA-21-1077 TCGA-22-4599 TCGA-33-4532 
        4.47        79.46        27.16        34.78        38.17        82.98 
TCGA-33-4538 TCGA-37-4133 TCGA-37-5819 TCGA-39-5031 TCGA-39-5036 TCGA-43-2578 
       97.94         7.82         3.39        27.35        35.64        18.08 
TCGA-43-6143 TCGA-46-6025 TCGA-51-4081 TCGA-60-2710 TCGA-60-2722 TCGA-60-2723 
        7.00         0.95         2.07        55.40        24.10        22.78 
TCGA-66-2754 TCGA-66-2756 TCGA-66-2773 TCGA-66-2777 
        2.01         0.99         3.02         2.01 

$`KEAP1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
       12.16        81.07         4.80        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 
        2.79        90.51         3.02       115.59        46.88        60.89 
TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 
       15.55         9.30        31.63        29.85        21.57        10.82 
TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 
        7.33         4.31         1.74        14.10        27.02        20.45 
TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 
       35.08        24.13        34.75        13.12        19.30        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       31.69        64.90        63.52        14.60        44.22         0.79 
TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       71.34        11.74        30.08        62.86        56.32        16.60 
TCGA-33-4533 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
      114.05        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4135 TCGA-37-4141 
        5.52         4.96         3.95         0.43         6.81         0.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 
        1.71        24.33         1.94        15.58         0.79        17.88 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       11.57        18.84         8.48         6.02         2.79         5.42 
TCGA-46-3768 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-56-1622 TCGA-56-5897 
        9.96         0.59         0.39         0.39        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       26.07         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
       21.07         0.99         0.92         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
       19.00        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
        1.94        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 
TCGA-85-6561 
        0.79 

  KEAP1 MUTATED KEAP1 WILD-TYPE 
           0.95            0.10 
  KEAP1 MUTATED KEAP1 WILD-TYPE 
          97.94          173.79 
  KEAP1 MUTATED KEAP1 WILD-TYPE 
          20.43           16.96 
[1] "0.9 - 97.9 (20.4)"  "0.1 - 173.8 (17.0)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
[1] "hr=" "1.6"
D6V2, continuous
D6V3, binary
                 cls
clus                0   1
  KEAP1 MUTATED     5  17
  KEAP1 WILD-TYPE  42 114
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KEAP1 MUTATED      5   17
  KEAP1 WILD-TYPE   42  114
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  FEMALE             5              42
  MALE              17             114
D6V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  KEAP1 MUTATED                                       2
  KEAP1 WILD-TYPE                                     3
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  KEAP1 MUTATED                                        0
  KEAP1 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  KEAP1 MUTATED                                                            20
  KEAP1 WILD-TYPE                                                         152
D6V5, multiclass
                                                             clus
vv                                                            KEAP1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            20
                                                             clus
vv                                                            KEAP1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             152
                 vv
clus               T1  T2  T3  T4
  KEAP1 MUTATED     4  16   0   2
  KEAP1 WILD-TYPE  32 100  14  10
D6V6, multiclass
    clus
vv   KEAP1 MUTATED KEAP1 WILD-TYPE
  T1             4              32
  T2            16             100
  T3             0              14
  T4             2              10
                 vv
clus               N0  N1  N2  N3
  KEAP1 MUTATED    14   5   3   0
  KEAP1 WILD-TYPE 103  34  14   5
D6V7, multiclass
    clus
vv   KEAP1 MUTATED KEAP1 WILD-TYPE
  N0            14             103
  N1             5              34
  N2             3              14
  N3             0               5
                 vv
clus               M0  M1  MX
  KEAP1 MUTATED    22   0   0
  KEAP1 WILD-TYPE 143   3   6
D6V8, multiclass
    clus
vv   KEAP1 MUTATED KEAP1 WILD-TYPE
  M0            22             143
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  KEAP1 MUTATED   11  5      5
  KEAP1 WILD-TYPE 86 33     36
D6V9, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  I                 11              86
  II                 5              33
  III+IV             5              36
D6V10, binary
                 cls
clus                0   1
  KEAP1 MUTATED     0  22
  KEAP1 WILD-TYPE   4 152
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KEAP1 MUTATED      0   22
  KEAP1 WILD-TYPE    4  152
     clus
vv    KEAP1 MUTATED KEAP1 WILD-TYPE
  NO              0               4
  YES            22             152
D6V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  KEAP1 MUTATED                                            12
  KEAP1 WILD-TYPE                                          82
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  KEAP1 MUTATED                                        5              4
  KEAP1 WILD-TYPE                                     38             24
                 vv
clus              LIFELONG NON-SMOKER
  KEAP1 MUTATED                     1
  KEAP1 WILD-TYPE                   7
D6V12, multiclass
                                             clus
vv                                            KEAP1 MUTATED KEAP1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            12              82
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  5              38
  CURRENT SMOKER                                          4              24
  LIFELONG NON-SMOKER                                     1               7
D6V13, continuous
                 vv
clus               R0  R1  R2  RX
  KEAP1 MUTATED    19   0   0   2
  KEAP1 WILD-TYPE 128   2   4   8
D6V14, multiclass
    clus
vv   KEAP1 MUTATED KEAP1 WILD-TYPE
  R0            19             128
  R1             0               2
  R2             0               4
  RX             2               8

Clustering(7) Variable = SI MUTATION ANALYSIS
D7V1, survival
              sevent
clus2           0  1
  SI MUTATED   18 14
  SI WILD-TYPE 79 56
  SI MUTATED SI WILD-TYPE 
          32          135 
  SI MUTATED SI WILD-TYPE 
          14           56 
$`SI MUTATED`
TCGA-18-3406 TCGA-18-3409 TCGA-18-3412 TCGA-18-3419 TCGA-18-4083 TCGA-21-1078 
       12.16        79.46        11.34         1.61         6.15        15.55 
TCGA-21-5787 TCGA-22-5473 TCGA-33-4566 TCGA-33-4586 TCGA-34-2600 TCGA-34-5231 
       10.82        63.52       173.79        14.07        61.61        50.24 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5928 TCGA-39-5036 TCGA-43-3920 TCGA-46-3768 
       32.68         9.04         5.52        35.64        18.84         9.96 
TCGA-60-2698 TCGA-60-2713 TCGA-60-2722 TCGA-66-2727 TCGA-66-2756 TCGA-66-2758 
       10.22        47.87        24.10        16.96         0.99        20.98 
TCGA-66-2767 TCGA-66-2771 TCGA-66-2781 TCGA-66-2787 TCGA-66-2788 TCGA-66-2793 
        2.01        19.00         3.98        40.01        22.98        10.06 
TCGA-66-2795 TCGA-85-6560 
        4.01         0.36 

$`SI WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3414 TCGA-18-3415 
        4.47        81.07         4.80        46.52        13.02        59.51 
TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 
       28.34        24.92        43.76         2.79        90.51         3.02 
TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1081 
       27.16       115.59        46.88        60.89        34.78         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       31.63        29.85        21.57         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-6737 TCGA-34-2596 TCGA-34-2608 
       43.10       103.53       141.34        19.76         2.63        32.84 
TCGA-34-5232 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 
       51.78        10.82         7.73        14.07        22.95         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5037 
        1.71        24.33         1.94        27.35        15.58         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       17.88        18.08        11.57         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        2.79         5.42         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 
        2.07        28.93         0.10         2.04         1.02        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2715 
       68.45        49.48        55.40        29.19         9.01        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
       30.61         3.16        26.07        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       11.77        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2757 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2768 
        0.99        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2782 
       23.01         3.02         2.01        19.00        12.03        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       24.95         1.94        25.97         4.04         5.03        30.02 
TCGA-66-2794 TCGA-66-2800 TCGA-85-6561 
       54.08        49.05         0.79 

  SI MUTATED SI WILD-TYPE 
        0.36         0.10 
  SI MUTATED SI WILD-TYPE 
      173.79       141.34 
  SI MUTATED SI WILD-TYPE 
       14.81        19.00 
[1] "0.4 - 173.8 (14.8)" "0.1 - 141.3 (19.0)"
  TCGA-18-3406   TCGA-18-3407   TCGA-18-3408   TCGA-18-3409   TCGA-18-3410 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-18-3411   TCGA-18-3412   TCGA-18-3414   TCGA-18-3415   TCGA-18-3416 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-18-3417   TCGA-18-3419   TCGA-18-3421   TCGA-18-4083   TCGA-18-4086 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-18-4721   TCGA-18-5592   TCGA-18-5595   TCGA-21-1070   TCGA-21-1071 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-21-1076   TCGA-21-1077   TCGA-21-1078   TCGA-21-1081   TCGA-21-5782 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-21-5784   TCGA-21-5786   TCGA-21-5787   TCGA-22-0944   TCGA-22-1002 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-22-1011   TCGA-22-1012   TCGA-22-1016   TCGA-22-4591   TCGA-22-4593 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-22-4595   TCGA-22-4599   TCGA-22-4601   TCGA-22-4604   TCGA-22-4607 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-22-4613   TCGA-22-5471   TCGA-22-5472   TCGA-22-5473   TCGA-22-5474 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-22-5477   TCGA-22-5478   TCGA-22-5480   TCGA-22-5482   TCGA-22-5485 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-22-5489   TCGA-22-5491   TCGA-22-5492   TCGA-33-4532   TCGA-33-4533 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-33-4538   TCGA-33-4547   TCGA-33-4566   TCGA-33-4582   TCGA-33-4583 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-33-4586   TCGA-33-6737   TCGA-34-2596   TCGA-34-2600   TCGA-34-2608 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-34-5231   TCGA-34-5232   TCGA-34-5234   TCGA-34-5236   TCGA-34-5239 
  "SI MUTATED" "SI WILD-TYPE"   "SI MUTATED"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-34-5240   TCGA-34-5241   TCGA-34-5927   TCGA-34-5928   TCGA-34-5929 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-37-3783   TCGA-37-3789   TCGA-37-4133   TCGA-37-4135   TCGA-37-4141 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-37-5819   TCGA-39-5016   TCGA-39-5019   TCGA-39-5021   TCGA-39-5022 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-39-5024   TCGA-39-5027   TCGA-39-5028   TCGA-39-5029   TCGA-39-5030 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-39-5031   TCGA-39-5035   TCGA-39-5036   TCGA-39-5037   TCGA-39-5039 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-43-2578   TCGA-43-3394   TCGA-43-3920   TCGA-43-5668   TCGA-43-6143 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-43-6647   TCGA-43-6770   TCGA-43-6771   TCGA-46-3768   TCGA-46-6025 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-46-6026   TCGA-51-4079   TCGA-51-4080   TCGA-51-4081   TCGA-56-1622 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-56-5897   TCGA-56-6545   TCGA-56-6546   TCGA-60-2698   TCGA-60-2707 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-60-2708   TCGA-60-2709   TCGA-60-2710   TCGA-60-2711   TCGA-60-2712 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-60-2713   TCGA-60-2715   TCGA-60-2719   TCGA-60-2720   TCGA-60-2721 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-60-2722   TCGA-60-2723   TCGA-60-2724   TCGA-60-2725   TCGA-60-2726 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2727   TCGA-66-2734   TCGA-66-2742   TCGA-66-2744   TCGA-66-2754 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2755   TCGA-66-2756   TCGA-66-2757   TCGA-66-2758   TCGA-66-2759 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-66-2763   TCGA-66-2765   TCGA-66-2766   TCGA-66-2767   TCGA-66-2768 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-66-2770   TCGA-66-2771   TCGA-66-2773   TCGA-66-2777   TCGA-66-2778 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2780   TCGA-66-2781   TCGA-66-2782   TCGA-66-2783   TCGA-66-2785 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2786   TCGA-66-2787   TCGA-66-2788   TCGA-66-2789   TCGA-66-2791 
"SI WILD-TYPE"   "SI MUTATED"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2792   TCGA-66-2793   TCGA-66-2794   TCGA-66-2795   TCGA-66-2800 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-85-6560   TCGA-85-6561 
  "SI MUTATED" "SI WILD-TYPE" 
  TCGA-18-3406   TCGA-18-3407   TCGA-18-3408   TCGA-18-3409   TCGA-18-3410 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-18-3411   TCGA-18-3412   TCGA-18-3414   TCGA-18-3415   TCGA-18-3416 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-18-3417   TCGA-18-3419   TCGA-18-3421   TCGA-18-4083   TCGA-18-4086 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-18-4721   TCGA-18-5592   TCGA-18-5595   TCGA-21-1070   TCGA-21-1071 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-21-1076   TCGA-21-1077   TCGA-21-1078   TCGA-21-1081   TCGA-21-5782 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-21-5784   TCGA-21-5786   TCGA-21-5787   TCGA-22-0944   TCGA-22-1002 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-22-1011   TCGA-22-1012   TCGA-22-1016   TCGA-22-4591   TCGA-22-4593 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-22-4595   TCGA-22-4599   TCGA-22-4601   TCGA-22-4604   TCGA-22-4607 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-22-4613   TCGA-22-5471   TCGA-22-5472   TCGA-22-5473   TCGA-22-5474 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-22-5477   TCGA-22-5478   TCGA-22-5480   TCGA-22-5482   TCGA-22-5485 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-22-5489   TCGA-22-5491   TCGA-22-5492   TCGA-33-4532   TCGA-33-4533 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-33-4538   TCGA-33-4547   TCGA-33-4566   TCGA-33-4582   TCGA-33-4583 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-33-4586   TCGA-33-6737   TCGA-34-2596   TCGA-34-2600   TCGA-34-2608 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-34-5231   TCGA-34-5232   TCGA-34-5234   TCGA-34-5236   TCGA-34-5239 
  "SI MUTATED" "SI WILD-TYPE"   "SI MUTATED"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-34-5240   TCGA-34-5241   TCGA-34-5927   TCGA-34-5928   TCGA-34-5929 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-37-3783   TCGA-37-3789   TCGA-37-4133   TCGA-37-4135   TCGA-37-4141 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-37-5819   TCGA-39-5016   TCGA-39-5019   TCGA-39-5021   TCGA-39-5022 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-39-5024   TCGA-39-5027   TCGA-39-5028   TCGA-39-5029   TCGA-39-5030 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-39-5031   TCGA-39-5035   TCGA-39-5036   TCGA-39-5037   TCGA-39-5039 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-43-2578   TCGA-43-3394   TCGA-43-3920   TCGA-43-5668   TCGA-43-6143 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-43-6647   TCGA-43-6770   TCGA-43-6771   TCGA-46-3768   TCGA-46-6025 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-46-6026   TCGA-51-4079   TCGA-51-4080   TCGA-51-4081   TCGA-56-1622 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-56-5897   TCGA-56-6545   TCGA-56-6546   TCGA-60-2698   TCGA-60-2707 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-60-2708   TCGA-60-2709   TCGA-60-2710   TCGA-60-2711   TCGA-60-2712 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-60-2713   TCGA-60-2715   TCGA-60-2719   TCGA-60-2720   TCGA-60-2721 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-60-2722   TCGA-60-2723   TCGA-60-2724   TCGA-60-2725   TCGA-60-2726 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2727   TCGA-66-2734   TCGA-66-2742   TCGA-66-2744   TCGA-66-2754 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2755   TCGA-66-2756   TCGA-66-2757   TCGA-66-2758   TCGA-66-2759 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-66-2763   TCGA-66-2765   TCGA-66-2766   TCGA-66-2767   TCGA-66-2768 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-66-2770   TCGA-66-2771   TCGA-66-2773   TCGA-66-2777   TCGA-66-2778 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2780   TCGA-66-2781   TCGA-66-2782   TCGA-66-2783   TCGA-66-2785 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2786   TCGA-66-2787   TCGA-66-2788   TCGA-66-2789   TCGA-66-2791 
"SI WILD-TYPE"   "SI MUTATED"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2792   TCGA-66-2793   TCGA-66-2794   TCGA-66-2795   TCGA-66-2800 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-85-6560   TCGA-85-6561 
  "SI MUTATED" "SI WILD-TYPE" 
  TCGA-18-3406   TCGA-18-3407   TCGA-18-3408   TCGA-18-3409   TCGA-18-3410 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-18-3411   TCGA-18-3412   TCGA-18-3414   TCGA-18-3415   TCGA-18-3416 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-18-3417   TCGA-18-3419   TCGA-18-3421   TCGA-18-4083   TCGA-18-4086 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-18-4721   TCGA-18-5592   TCGA-18-5595   TCGA-21-1070   TCGA-21-1071 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-21-1076   TCGA-21-1077   TCGA-21-1078   TCGA-21-1081   TCGA-21-5782 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-21-5784   TCGA-21-5786   TCGA-21-5787   TCGA-22-0944   TCGA-22-1002 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-22-1011   TCGA-22-1012   TCGA-22-1016   TCGA-22-4591   TCGA-22-4593 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-22-4595   TCGA-22-4599   TCGA-22-4601   TCGA-22-4604   TCGA-22-4607 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-22-4613   TCGA-22-5471   TCGA-22-5472   TCGA-22-5473   TCGA-22-5474 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-22-5477   TCGA-22-5478   TCGA-22-5480   TCGA-22-5482   TCGA-22-5485 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-22-5489   TCGA-22-5491   TCGA-22-5492   TCGA-33-4532   TCGA-33-4533 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-33-4538   TCGA-33-4547   TCGA-33-4566   TCGA-33-4582   TCGA-33-4583 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-33-4586   TCGA-33-6737   TCGA-34-2596   TCGA-34-2600   TCGA-34-2608 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-34-5231   TCGA-34-5232   TCGA-34-5234   TCGA-34-5236   TCGA-34-5239 
  "SI MUTATED" "SI WILD-TYPE"   "SI MUTATED"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-34-5240   TCGA-34-5241   TCGA-34-5927   TCGA-34-5928   TCGA-34-5929 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-37-3783   TCGA-37-3789   TCGA-37-4133   TCGA-37-4135   TCGA-37-4141 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-37-5819   TCGA-39-5016   TCGA-39-5019   TCGA-39-5021   TCGA-39-5022 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-39-5024   TCGA-39-5027   TCGA-39-5028   TCGA-39-5029   TCGA-39-5030 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-39-5031   TCGA-39-5035   TCGA-39-5036   TCGA-39-5037   TCGA-39-5039 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-43-2578   TCGA-43-3394   TCGA-43-3920   TCGA-43-5668   TCGA-43-6143 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-43-6647   TCGA-43-6770   TCGA-43-6771   TCGA-46-3768   TCGA-46-6025 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-46-6026   TCGA-51-4079   TCGA-51-4080   TCGA-51-4081   TCGA-56-1622 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-56-5897   TCGA-56-6545   TCGA-56-6546   TCGA-60-2698   TCGA-60-2707 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-60-2708   TCGA-60-2709   TCGA-60-2710   TCGA-60-2711   TCGA-60-2712 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-60-2713   TCGA-60-2715   TCGA-60-2719   TCGA-60-2720   TCGA-60-2721 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-60-2722   TCGA-60-2723   TCGA-60-2724   TCGA-60-2725   TCGA-60-2726 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2727   TCGA-66-2734   TCGA-66-2742   TCGA-66-2744   TCGA-66-2754 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2755   TCGA-66-2756   TCGA-66-2757   TCGA-66-2758   TCGA-66-2759 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-66-2763   TCGA-66-2765   TCGA-66-2766   TCGA-66-2767   TCGA-66-2768 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-66-2770   TCGA-66-2771   TCGA-66-2773   TCGA-66-2777   TCGA-66-2778 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2780   TCGA-66-2781   TCGA-66-2782   TCGA-66-2783   TCGA-66-2785 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2786   TCGA-66-2787   TCGA-66-2788   TCGA-66-2789   TCGA-66-2791 
"SI WILD-TYPE"   "SI MUTATED"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2792   TCGA-66-2793   TCGA-66-2794   TCGA-66-2795   TCGA-66-2800 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-85-6560   TCGA-85-6561 
  "SI MUTATED" "SI WILD-TYPE" 
[1] "hr=" "1"  
D7V2, continuous
D7V3, binary
              cls
clus            0  1
  SI MUTATED    4 32
  SI WILD-TYPE 43 99
[1] "tbl2"
              cls
clus           [,1] [,2]
  SI MUTATED      4   32
  SI WILD-TYPE   43   99
        clus
vv       SI MUTATED SI WILD-TYPE
  FEMALE          4           43
  MALE           32           99
D7V4, continuous
              vv
clus           LUNG BASALOID SQUAMOUS CELL CARCINOMA
  SI MUTATED                                       1
  SI WILD-TYPE                                     4
              vv
clus           LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  SI MUTATED                                        1
  SI WILD-TYPE                                      0
              vv
clus           LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SI MUTATED                                                            34
  SI WILD-TYPE                                                         138
D7V5, multiclass
                                                             clus
vv                                                            SI MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                               1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)         34
                                                             clus
vv                                                            SI WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)          138
              vv
clus           T1 T2 T3 T4
  SI MUTATED    6 22  4  4
  SI WILD-TYPE 30 94 10  8
D7V6, multiclass
    clus
vv   SI MUTATED SI WILD-TYPE
  T1          6           30
  T2         22           94
  T3          4           10
  T4          4            8
              vv
clus           N0 N1 N2 N3
  SI MUTATED   23 10  2  1
  SI WILD-TYPE 94 29 15  4
D7V7, multiclass
    clus
vv   SI MUTATED SI WILD-TYPE
  N0         23           94
  N1         10           29
  N2          2           15
  N3          1            4
              vv
clus            M0  M1  MX
  SI MUTATED    36   0   0
  SI WILD-TYPE 129   3   6
D7V8, multiclass
    clus
vv   SI MUTATED SI WILD-TYPE
  M0         36          129
  M1          0            3
  MX          0            6
              vv
clus            I II III+IV
  SI MUTATED   17 10      8
  SI WILD-TYPE 80 28     33
D7V9, multiclass
        clus
vv       SI MUTATED SI WILD-TYPE
  I              17           80
  II             10           28
  III+IV          8           33
D7V10, binary
              cls
clus             0   1
  SI MUTATED     1  35
  SI WILD-TYPE   3 139
[1] "tbl2"
              cls
clus           [,1] [,2]
  SI MUTATED      1   35
  SI WILD-TYPE    3  139
     clus
vv    SI MUTATED SI WILD-TYPE
  NO           1            3
  YES         35          139
D7V11, continuous
              vv
clus           CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  SI MUTATED                                            25
  SI WILD-TYPE                                          69
              vv
clus           CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  SI MUTATED                                        5              3
  SI WILD-TYPE                                     38             25
              vv
clus           LIFELONG NON-SMOKER
  SI MUTATED                     2
  SI WILD-TYPE                   6
D7V12, multiclass
                                             clus
vv                                            SI MUTATED SI WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS         25           69
  CURRENT REFORMED SMOKER FOR > 15 YEARS               5           38
  CURRENT SMOKER                                       3           25
  LIFELONG NON-SMOKER                                  2            6
D7V13, continuous
              vv
clus            R0  R1  R2  RX
  SI MUTATED    29   1   0   2
  SI WILD-TYPE 118   1   4   8
D7V14, multiclass
    clus
vv   SI MUTATED SI WILD-TYPE
  R0         29          118
  R1          1            1
  R2          0            4
  RX          2            8

Clustering(8) Variable = PTEN MUTATION ANALYSIS
D8V1, survival
                sevent
clus2             0  1
  PTEN MUTATED   12  2
  PTEN WILD-TYPE 85 68
  PTEN MUTATED PTEN WILD-TYPE 
            14            153 
  PTEN MUTATED PTEN WILD-TYPE 
             2             68 
$`PTEN MUTATED`
TCGA-18-3417 TCGA-18-3421 TCGA-22-4599 TCGA-22-5489 TCGA-33-4583 TCGA-39-5024 
       24.92        43.76        38.17        62.86       141.34        70.03 
TCGA-39-5027 TCGA-43-2578 TCGA-43-3920 TCGA-56-5897 TCGA-56-6546 TCGA-60-2707 
       60.76        18.08        18.84         0.10         1.02        21.70 
TCGA-66-2783 TCGA-66-2788 
       24.95        22.98 

$`PTEN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-4083 
       11.34        13.02        59.51        28.34         1.61         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 
       27.02        20.45        35.08        24.13        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5491 
       44.22         0.79        71.34        11.74        30.08        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 
      103.53        14.07        19.76         2.63        61.61        32.84 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         4.96         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       68.58        55.17         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-3394 TCGA-43-5668 
       15.58        35.64         0.79        17.88        11.57         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-6545 
        0.59         0.39         0.39         2.07        28.93         2.04 
TCGA-60-2698 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       10.22        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
       21.07         0.99         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
       12.03         3.98        12.00         1.94        25.97        40.01 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  PTEN MUTATED PTEN WILD-TYPE 
          0.10           0.36 
  PTEN MUTATED PTEN WILD-TYPE 
        141.34         173.79 
  PTEN MUTATED PTEN WILD-TYPE 
        24.935         14.600 
[1] "0.1 - 141.3 (24.9)" "0.4 - 173.8 (14.6)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
  "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
  "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
  "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
[1] "hr=" "4.6"
D8V2, continuous
D8V3, binary
                cls
clus               0   1
  PTEN MUTATED     3  11
  PTEN WILD-TYPE  44 120
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTEN MUTATED      3   11
  PTEN WILD-TYPE   44  120
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  FEMALE            3             44
  MALE             11            120
D8V4, continuous
[1] "Remove cluster labels:" "PTEN MUTATED"          
clus
  PTEN MUTATED PTEN WILD-TYPE 
             2             34 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3410     TCGA-18-3414 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-3419     TCGA-21-5782     TCGA-21-5787     TCGA-22-4591 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-4593     TCGA-22-4595     TCGA-22-4601     TCGA-22-4604 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5472     TCGA-22-5473     TCGA-22-5474 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-5477     TCGA-22-5478     TCGA-22-5480     TCGA-22-5482 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-5485     TCGA-22-5491     TCGA-22-5492     TCGA-34-5234 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-37-4133     TCGA-37-4135     TCGA-37-5819     TCGA-60-2698 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-60-2712     TCGA-60-2715     TCGA-60-2725     TCGA-60-2726 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-70-6722     TCGA-70-6723 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" 
                vv
clus             LUNG BASALOID SQUAMOUS CELL CARCINOMA
  PTEN MUTATED                                       0
  PTEN WILD-TYPE                                     5
                vv
clus             LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  PTEN MUTATED                                        0
  PTEN WILD-TYPE                                      1
                vv
clus             LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PTEN MUTATED                                                            14
  PTEN WILD-TYPE                                                         158
D8V5, multiclass
                                                             clus
vv                                                            PTEN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)           14
                                                             clus
vv                                                            PTEN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            158
                vv
clus              T1  T2  T3  T4
  PTEN MUTATED     4  10   0   0
  PTEN WILD-TYPE  32 106  14  12
D8V6, multiclass
    clus
vv   PTEN MUTATED PTEN WILD-TYPE
  T1            4             32
  T2           10            106
  T3            0             14
  T4            0             12
                vv
clus              N0  N1  N2  N3
  PTEN MUTATED    11   1   1   1
  PTEN WILD-TYPE 106  38  16   4
D8V7, multiclass
    clus
vv   PTEN MUTATED PTEN WILD-TYPE
  N0           11            106
  N1            1             38
  N2            1             16
  N3            1              4
                vv
clus              M0  M1  MX
  PTEN MUTATED    11   1   2
  PTEN WILD-TYPE 154   2   4
D8V8, multiclass
    clus
vv   PTEN MUTATED PTEN WILD-TYPE
  M0           11            154
  M1            1              2
  MX            2              4
                vv
clus              I II III+IV
  PTEN MUTATED   10  0      3
  PTEN WILD-TYPE 87 38     38
D8V9, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  I                10             87
  II                0             38
  III+IV            3             38
D8V10, binary
                cls
clus               0   1
  PTEN MUTATED     0  14
  PTEN WILD-TYPE   4 160
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTEN MUTATED      0   14
  PTEN WILD-TYPE    4  160
     clus
vv    PTEN MUTATED PTEN WILD-TYPE
  NO             0              4
  YES           14            160
D8V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  PTEN MUTATED                                            10
  PTEN WILD-TYPE                                          84
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  PTEN MUTATED                                        3              1
  PTEN WILD-TYPE                                     40             27
                vv
clus             LIFELONG NON-SMOKER
  PTEN MUTATED                     0
  PTEN WILD-TYPE                   8
D8V12, multiclass
                                             clus
vv                                            PTEN MUTATED PTEN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           10             84
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 3             40
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    0              8
D8V13, continuous
                vv
clus              R0  R1  R2  RX
  PTEN MUTATED    10   0   1   1
  PTEN WILD-TYPE 137   2   3   9
D8V14, multiclass
    clus
vv   PTEN MUTATED PTEN WILD-TYPE
  R0           10            137
  R1            0              2
  R2            1              3
  RX            1              9

Clustering(9) Variable = TRIM58 MUTATION ANALYSIS
D9V1, survival
                  sevent
clus2               0  1
  TRIM58 MUTATED    9  5
  TRIM58 WILD-TYPE 88 65
  TRIM58 MUTATED TRIM58 WILD-TYPE 
              14              153 
  TRIM58 MUTATED TRIM58 WILD-TYPE 
               5               65 
$`TRIM58 MUTATED`
TCGA-21-1076 TCGA-22-1016 TCGA-22-4599 TCGA-33-4566 TCGA-37-5819 TCGA-39-5031 
       60.89        27.02        38.17       173.79         3.39        27.35 
TCGA-43-5668 TCGA-43-6143 TCGA-60-2708 TCGA-60-2724 TCGA-66-2734 TCGA-66-2773 
        8.48         7.00        68.45         1.22        43.10         3.02 
TCGA-66-2793 TCGA-85-6561 
       10.06         0.79 

$`TRIM58 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
      115.59        46.88        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 
       14.10        20.45        35.08        24.13        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5016 TCGA-39-5019 
        0.43         7.82         6.81         0.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
        1.94        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
       11.57        18.84         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 
        0.95         0.59         0.39         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2709 
        0.10         2.04         1.02        10.22        21.70        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 
        3.16        26.07        24.10        22.78        23.64        11.77 
TCGA-66-2727 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       16.96        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 
        2.01         2.01        23.01        19.00         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 
       40.01        22.98         4.04         5.03        30.02        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
        4.01        49.05         0.36 

  TRIM58 MUTATED TRIM58 WILD-TYPE 
            0.79             0.10 
  TRIM58 MUTATED TRIM58 WILD-TYPE 
          173.79           141.34 
  TRIM58 MUTATED TRIM58 WILD-TYPE 
           18.54            17.88 
[1] "0.8 - 173.8 (18.5)" "0.1 - 141.3 (17.9)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED"   "TRIM58 MUTATED" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED"   "TRIM58 MUTATED" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED"   "TRIM58 MUTATED" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
[1] "hr=" "1.6"
D9V2, continuous
D9V3, binary
                  cls
clus                 0   1
  TRIM58 MUTATED     5  10
  TRIM58 WILD-TYPE  42 121
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM58 MUTATED      5   10
  TRIM58 WILD-TYPE   42  121
        clus
vv       TRIM58 MUTATED TRIM58 WILD-TYPE
  FEMALE              5               42
  MALE               10              121
D9V4, continuous
[1] "Remove cluster labels:" "TRIM58 MUTATED"        
clus
  TRIM58 MUTATED TRIM58 WILD-TYPE 
               2               34 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4595       TCGA-22-4601       TCGA-22-4604 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5472       TCGA-22-5473       TCGA-22-5474 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5482 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-34-5234       TCGA-37-4133       TCGA-37-4135       TCGA-60-2698 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2715       TCGA-60-2725       TCGA-60-2726 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-70-6722       TCGA-70-6723 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  TRIM58 MUTATED                                       1
  TRIM58 WILD-TYPE                                     4
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  TRIM58 MUTATED                                        0
  TRIM58 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TRIM58 MUTATED                                                            14
  TRIM58 WILD-TYPE                                                         158
D9V5, multiclass
                                                             clus
vv                                                            TRIM58 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             14
                                                             clus
vv                                                            TRIM58 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              158
                  vv
clus                T1  T2  T3  T4
  TRIM58 MUTATED     2  11   1   1
  TRIM58 WILD-TYPE  34 105  13  11
D9V6, multiclass
    clus
vv   TRIM58 MUTATED TRIM58 WILD-TYPE
  T1              2               34
  T2             11              105
  T3              1               13
  T4              1               11
                  vv
clus                N0  N1  N2  N3
  TRIM58 MUTATED    10   4   1   0
  TRIM58 WILD-TYPE 107  35  16   5
D9V7, multiclass
    clus
vv   TRIM58 MUTATED TRIM58 WILD-TYPE
  N0             10              107
  N1              4               35
  N2              1               16
  N3              0                5
                  vv
clus                M0  M1  MX
  TRIM58 MUTATED    15   0   0
  TRIM58 WILD-TYPE 150   3   6
D9V8, multiclass
    clus
vv   TRIM58 MUTATED TRIM58 WILD-TYPE
  M0             15              150
  M1              0                3
  MX              0                6
                  vv
clus                I II III+IV
  TRIM58 MUTATED    8  4      3
  TRIM58 WILD-TYPE 89 34     38
D9V9, multiclass
        clus
vv       TRIM58 MUTATED TRIM58 WILD-TYPE
  I                   8               89
  II                  4               34
  III+IV              3               38
D9V10, binary
                  cls
clus                 0   1
  TRIM58 MUTATED     0  15
  TRIM58 WILD-TYPE   4 159
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM58 MUTATED      0   15
  TRIM58 WILD-TYPE    4  159
     clus
vv    TRIM58 MUTATED TRIM58 WILD-TYPE
  NO               0                4
  YES             15              159
D9V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  TRIM58 MUTATED                                             9
  TRIM58 WILD-TYPE                                          85
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  TRIM58 MUTATED                                        4              2
  TRIM58 WILD-TYPE                                     39             26
                  vv
clus               LIFELONG NON-SMOKER
  TRIM58 MUTATED                     0
  TRIM58 WILD-TYPE                   8
D9V12, multiclass
                                             clus
vv                                            TRIM58 MUTATED TRIM58 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              9               85
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   4               39
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0                8
D9V13, continuous
                  vv
clus                R0  R1  R2  RX
  TRIM58 MUTATED    13   0   0   1
  TRIM58 WILD-TYPE 134   2   4   9
D9V14, multiclass
    clus
vv   TRIM58 MUTATED TRIM58 WILD-TYPE
  R0             13              134
  R1              0                2
  R2              0                4
  RX              1                9

Clustering(10) Variable = OR5L2 MUTATION ANALYSIS
D10V1, survival
                 sevent
clus2              0  1
  OR5L2 MUTATED    9  4
  OR5L2 WILD-TYPE 88 66
  OR5L2 MUTATED OR5L2 WILD-TYPE 
             13             154 
  OR5L2 MUTATED OR5L2 WILD-TYPE 
              4              66 
$`OR5L2 MUTATED`
TCGA-18-3409 TCGA-18-3421 TCGA-21-5782 TCGA-22-4595 TCGA-22-4604 TCGA-33-4586 
       79.46        43.76        31.63        24.13        13.12        14.07 
TCGA-34-5234 TCGA-37-5819 TCGA-60-2723 TCGA-66-2758 TCGA-66-2794 TCGA-66-2800 
       32.68         3.39        22.78        20.98        54.08        49.05 
TCGA-85-6560 
        0.36 

$`OR5L2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-4083 
       13.02        59.51        28.34        24.92         1.61         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5784 TCGA-21-5786 
       60.89        34.78        15.55         9.30        29.85        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4599 TCGA-22-4601 TCGA-22-4607 TCGA-22-4613 
       20.45        35.08        38.17        34.75        19.30        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       31.69        64.90        63.52        14.60        44.22         0.79 
TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       71.34        11.74        30.08        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       82.98       114.05        97.94        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 
      141.34        19.76         2.63        61.61        32.84        50.24 
TCGA-34-5232 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       51.78         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 
        5.52         4.96         3.95         0.43         7.82         6.81 
TCGA-37-4141 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        0.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
        8.48         7.00         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 
        0.95         0.59         0.39         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 
        0.10         2.04         1.02        10.22        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2724 TCGA-60-2725 
       30.61         3.16        26.07        24.10         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.92         0.99         0.99        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
        1.94        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2795 TCGA-85-6561 
       30.02        10.06         4.01         0.79 

  OR5L2 MUTATED OR5L2 WILD-TYPE 
           0.36            0.10 
  OR5L2 MUTATED OR5L2 WILD-TYPE 
          79.46          173.79 
  OR5L2 MUTATED OR5L2 WILD-TYPE 
          24.13           16.09 
[1] "0.4 - 79.5 (24.1)"  "0.1 - 173.8 (16.1)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
  "OR5L2 MUTATED"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
  "OR5L2 MUTATED"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
  "OR5L2 MUTATED"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
[1] "hr=" "1.6"
D10V2, continuous
D10V3, binary
                 cls
clus                0   1
  OR5L2 MUTATED     3  10
  OR5L2 WILD-TYPE  44 121
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5L2 MUTATED      3   10
  OR5L2 WILD-TYPE   44  121
        clus
vv       OR5L2 MUTATED OR5L2 WILD-TYPE
  FEMALE             3              44
  MALE              10             121
D10V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR5L2 MUTATED                                       1
  OR5L2 WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR5L2 MUTATED                                        0
  OR5L2 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR5L2 MUTATED                                                            12
  OR5L2 WILD-TYPE                                                         160
D10V5, multiclass
                                                             clus
vv                                                            OR5L2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            12
                                                             clus
vv                                                            OR5L2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             160
                 vv
clus               T1  T2  T3  T4
  OR5L2 MUTATED     2   8   1   2
  OR5L2 WILD-TYPE  34 108  13  10
D10V6, multiclass
    clus
vv   OR5L2 MUTATED OR5L2 WILD-TYPE
  T1             2              34
  T2             8             108
  T3             1              13
  T4             2              10
                 vv
clus               N0  N1  N2  N3
  OR5L2 MUTATED     7   2   4   0
  OR5L2 WILD-TYPE 110  37  13   5
D10V7, multiclass
    clus
vv   OR5L2 MUTATED OR5L2 WILD-TYPE
  N0             7             110
  N1             2              37
  N2             4              13
  N3             0               5
                 vv
clus               M0  M1  MX
  OR5L2 MUTATED    12   0   0
  OR5L2 WILD-TYPE 153   3   6
D10V8, multiclass
    clus
vv   OR5L2 MUTATED OR5L2 WILD-TYPE
  M0            12             153
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  OR5L2 MUTATED    5  1      6
  OR5L2 WILD-TYPE 92 37     35
D10V9, multiclass
        clus
vv       OR5L2 MUTATED OR5L2 WILD-TYPE
  I                  5              92
  II                 1              37
  III+IV             6              35
D10V10, binary
                 cls
clus                0   1
  OR5L2 MUTATED     1  12
  OR5L2 WILD-TYPE   3 162
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5L2 MUTATED      1   12
  OR5L2 WILD-TYPE    3  162
     clus
vv    OR5L2 MUTATED OR5L2 WILD-TYPE
  NO              1               3
  YES            12             162
D10V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR5L2 MUTATED                                             8
  OR5L2 WILD-TYPE                                          86
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR5L2 MUTATED                                        3              2
  OR5L2 WILD-TYPE                                     40             26
                 vv
clus              LIFELONG NON-SMOKER
  OR5L2 MUTATED                     0
  OR5L2 WILD-TYPE                   8
D10V12, multiclass
                                             clus
vv                                            OR5L2 MUTATED OR5L2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             8              86
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              40
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0               8
D10V13, continuous
                 vv
clus               R0  R1  R2  RX
  OR5L2 MUTATED    12   0   0   0
  OR5L2 WILD-TYPE 135   2   4  10
D10V14, multiclass
    clus
vv   OR5L2 MUTATED OR5L2 WILD-TYPE
  R0            12             135
  R1             0               2
  R2             0               4
  RX             0              10

Clustering(11) Variable = FAM5C MUTATION ANALYSIS
D11V1, survival
                 sevent
clus2              0  1
  FAM5C MUTATED   13 13
  FAM5C WILD-TYPE 84 57
  FAM5C MUTATED FAM5C WILD-TYPE 
             26             141 
  FAM5C MUTATED FAM5C WILD-TYPE 
             13              57 
$`FAM5C MUTATED`
TCGA-18-3411 TCGA-18-3419 TCGA-18-5592 TCGA-21-1070 TCGA-21-5786 TCGA-21-5787 
       46.52         1.61         3.02       115.59        21.57        10.82 
TCGA-22-1002 TCGA-22-4613 TCGA-33-4532 TCGA-33-4538 TCGA-33-4566 TCGA-34-2596 
        4.31        11.77        82.98        97.94       173.79         2.63 
TCGA-34-5239 TCGA-34-5927 TCGA-37-3783 TCGA-39-5028 TCGA-39-5036 TCGA-39-5039 
       10.82        22.95         3.95         1.71        35.64        17.88 
TCGA-43-6771 TCGA-51-4079 TCGA-51-4080 TCGA-60-2708 TCGA-60-2726 TCGA-66-2754 
        5.42         0.39         0.39        68.45        11.77         2.01 
TCGA-66-2766 TCGA-66-2773 
        1.02         3.02 

$`FAM5C WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 
       12.16         4.47        81.07        79.46         4.80        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        28.34        24.92        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 
        2.79        90.51        27.16        46.88        60.89        34.78 
TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-22-0944 TCGA-22-1011 
       15.55         9.30        31.63        29.85         7.33         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       34.75        13.12        19.30        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4533 TCGA-33-4547 TCGA-33-4582 
       62.86        56.32        16.60       114.05        43.10       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 
      141.34        14.07        19.76        61.61        32.84        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-5928 
       51.78        32.68         9.04         7.73        14.07         5.52 
TCGA-34-5929 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        4.96         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5037 TCGA-43-2578 
       24.33         1.94        27.35        15.58         0.79        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        9.96         0.95         0.59         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 
        2.04         1.02        10.22        21.70        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 
       26.07        24.10        22.78         1.22        23.64        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
       43.10        21.07         0.99         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 
       20.98        25.02         0.99         2.01         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       23.01        19.00         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  FAM5C MUTATED FAM5C WILD-TYPE 
           0.39            0.10 
  FAM5C MUTATED FAM5C WILD-TYPE 
         173.79          141.34 
  FAM5C MUTATED FAM5C WILD-TYPE 
          10.82           19.00 
[1] "0.4 - 173.8 (10.8)" "0.1 - 141.3 (19.0)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED"   "FAM5C MUTATED" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
  "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED"   "FAM5C MUTATED" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED"   "FAM5C MUTATED" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
  "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED"   "FAM5C MUTATED" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED"   "FAM5C MUTATED" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
  "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED"   "FAM5C MUTATED" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
[1] "hr=" "1.2"
D11V2, continuous
D11V3, binary
                 cls
clus                0   1
  FAM5C MUTATED     6  21
  FAM5C WILD-TYPE  41 110
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FAM5C MUTATED      6   21
  FAM5C WILD-TYPE   41  110
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  FEMALE             6              41
  MALE              21             110
D11V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  FAM5C MUTATED                                       1
  FAM5C WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  FAM5C MUTATED                                        0
  FAM5C WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  FAM5C MUTATED                                                            26
  FAM5C WILD-TYPE                                                         146
D11V5, multiclass
                                                             clus
vv                                                            FAM5C MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            26
                                                             clus
vv                                                            FAM5C WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             146
                 vv
clus              T1 T2 T3 T4
  FAM5C MUTATED    3 17  4  3
  FAM5C WILD-TYPE 33 99 10  9
D11V6, multiclass
    clus
vv   FAM5C MUTATED FAM5C WILD-TYPE
  T1             3              33
  T2            17              99
  T3             4              10
  T4             3               9
                 vv
clus               N0  N1  N2  N3
  FAM5C MUTATED    14   7   6   0
  FAM5C WILD-TYPE 103  32  11   5
D11V7, multiclass
    clus
vv   FAM5C MUTATED FAM5C WILD-TYPE
  N0            14             103
  N1             7              32
  N2             6              11
  N3             0               5
                 vv
clus               M0  M1  MX
  FAM5C MUTATED    24   0   1
  FAM5C WILD-TYPE 141   3   5
D11V8, multiclass
    clus
vv   FAM5C MUTATED FAM5C WILD-TYPE
  M0            24             141
  M1             0               3
  MX             1               5
                 vv
clus               I II III+IV
  FAM5C MUTATED   10  6     11
  FAM5C WILD-TYPE 87 32     30
D11V9, multiclass
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  I                 10              87
  II                 6              32
  III+IV            11              30
D11V10, binary
                 cls
clus                0   1
  FAM5C MUTATED     1  26
  FAM5C WILD-TYPE   3 148
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FAM5C MUTATED      1   26
  FAM5C WILD-TYPE    3  148
     clus
vv    FAM5C MUTATED FAM5C WILD-TYPE
  NO              1               3
  YES            26             148
D11V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  FAM5C MUTATED                                            11
  FAM5C WILD-TYPE                                          83
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  FAM5C MUTATED                                        7              5
  FAM5C WILD-TYPE                                     36             23
                 vv
clus              LIFELONG NON-SMOKER
  FAM5C MUTATED                     1
  FAM5C WILD-TYPE                   7
D11V12, multiclass
                                             clus
vv                                            FAM5C MUTATED FAM5C WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            11              83
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  7              36
  CURRENT SMOKER                                          5              23
  LIFELONG NON-SMOKER                                     1               7
D11V13, continuous
                 vv
clus               R0  R1  R2  RX
  FAM5C MUTATED    22   0   0   3
  FAM5C WILD-TYPE 125   2   4   7
D11V14, multiclass
    clus
vv   FAM5C MUTATED FAM5C WILD-TYPE
  R0            22             125
  R1             0               2
  R2             0               4
  RX             3               7

Clustering(12) Variable = LRRC4C MUTATION ANALYSIS
D12V1, survival
                  sevent
clus2               0  1
  LRRC4C MUTATED    4 11
  LRRC4C WILD-TYPE 93 59
  LRRC4C MUTATED LRRC4C WILD-TYPE 
              15              152 
  LRRC4C MUTATED LRRC4C WILD-TYPE 
              11               59 
$`LRRC4C MUTATED`
TCGA-21-5782 TCGA-22-4591 TCGA-22-4613 TCGA-22-5473 TCGA-22-5491 TCGA-33-4566 
       31.63        20.45        11.77        63.52        56.32       173.79 
TCGA-34-5236 TCGA-34-5927 TCGA-37-4133 TCGA-43-6770 TCGA-43-6771 TCGA-51-4079 
        9.04        22.95         7.82         2.79         5.42         0.39 
TCGA-51-4080 TCGA-60-2698 TCGA-66-2785 
        0.39        10.22         1.94 

$`LRRC4C WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       14.10        27.02        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 
       13.12        19.30        31.69        64.90        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 
        0.79        71.34        11.74        30.08        62.86        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 
       82.98       114.05        97.94        43.10       103.53       141.34 
TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 
       14.07        19.76         2.63        61.61        32.84        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5928 
       51.78        32.68        10.82         7.73        14.07         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        4.96         3.95         0.43         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4081 
        7.00         6.02         9.96         0.95         0.59         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 
       28.93         0.10         2.04         1.02        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       30.61         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
       23.64        11.77        16.96        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       12.00        24.95        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  LRRC4C MUTATED LRRC4C WILD-TYPE 
            0.39             0.10 
  LRRC4C MUTATED LRRC4C WILD-TYPE 
          173.79           141.34 
  LRRC4C MUTATED LRRC4C WILD-TYPE 
           10.22            18.46 
[1] "0.4 - 173.8 (10.2)" "0.1 - 141.3 (18.5)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
  "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE"   "LRRC4C MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE"   "LRRC4C MUTATED" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
  "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE"   "LRRC4C MUTATED"   "LRRC4C MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
  "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE"   "LRRC4C MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE"   "LRRC4C MUTATED" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
  "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE"   "LRRC4C MUTATED"   "LRRC4C MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
  "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE"   "LRRC4C MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE"   "LRRC4C MUTATED" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
  "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE"   "LRRC4C MUTATED"   "LRRC4C MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
[1] "hr=" "1.9"
D12V2, continuous
D12V3, binary
                  cls
clus                 0   1
  LRRC4C MUTATED     5  12
  LRRC4C WILD-TYPE  42 119
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRC4C MUTATED      5   12
  LRRC4C WILD-TYPE   42  119
        clus
vv       LRRC4C MUTATED LRRC4C WILD-TYPE
  FEMALE              5               42
  MALE               12              119
D12V4, continuous
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  LRRC4C MUTATED                                       1
  LRRC4C WILD-TYPE                                     4
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  LRRC4C MUTATED                                        0
  LRRC4C WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  LRRC4C MUTATED                                                            16
  LRRC4C WILD-TYPE                                                         156
D12V5, multiclass
                                                             clus
vv                                                            LRRC4C MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             16
                                                             clus
vv                                                            LRRC4C WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              156
                  vv
clus                T1  T2  T3  T4
  LRRC4C MUTATED     3   8   3   3
  LRRC4C WILD-TYPE  33 108  11   9
D12V6, multiclass
    clus
vv   LRRC4C MUTATED LRRC4C WILD-TYPE
  T1              3               33
  T2              8              108
  T3              3               11
  T4              3                9
                  vv
clus                N0  N1  N2  N3
  LRRC4C MUTATED    14   2   1   0
  LRRC4C WILD-TYPE 103  37  16   5
D12V7, multiclass
    clus
vv   LRRC4C MUTATED LRRC4C WILD-TYPE
  N0             14              103
  N1              2               37
  N2              1               16
  N3              0                5
                  vv
clus                M0  M1  MX
  LRRC4C MUTATED    13   0   2
  LRRC4C WILD-TYPE 152   3   4
D12V8, multiclass
    clus
vv   LRRC4C MUTATED LRRC4C WILD-TYPE
  M0             13              152
  M1              0                3
  MX              2                4
                  vv
clus                I II III+IV
  LRRC4C MUTATED   11  3      3
  LRRC4C WILD-TYPE 86 35     38
D12V9, multiclass
        clus
vv       LRRC4C MUTATED LRRC4C WILD-TYPE
  I                  11               86
  II                  3               35
  III+IV              3               38
D12V10, binary
                  cls
clus                 0   1
  LRRC4C MUTATED     0  17
  LRRC4C WILD-TYPE   4 157
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRC4C MUTATED      0   17
  LRRC4C WILD-TYPE    4  157
     clus
vv    LRRC4C MUTATED LRRC4C WILD-TYPE
  NO               0                4
  YES             17              157
D12V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  LRRC4C MUTATED                                             7
  LRRC4C WILD-TYPE                                          87
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  LRRC4C MUTATED                                        4              4
  LRRC4C WILD-TYPE                                     39             24
                  vv
clus               LIFELONG NON-SMOKER
  LRRC4C MUTATED                     0
  LRRC4C WILD-TYPE                   8
D12V12, multiclass
                                             clus
vv                                            LRRC4C MUTATED LRRC4C WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              7               87
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   4               39
  CURRENT SMOKER                                           4               24
  LIFELONG NON-SMOKER                                      0                8
D12V13, continuous
                  vv
clus                R0  R1  R2  RX
  LRRC4C MUTATED    11   1   0   3
  LRRC4C WILD-TYPE 136   1   4   7
D12V14, multiclass
    clus
vv   LRRC4C MUTATED LRRC4C WILD-TYPE
  R0             11              136
  R1              1                1
  R2              0                4
  RX              3                7

Clustering(13) Variable = ZBBX MUTATION ANALYSIS
D13V1, survival
                sevent
clus2             0  1
  ZBBX MUTATED    9  8
  ZBBX WILD-TYPE 88 62
  ZBBX MUTATED ZBBX WILD-TYPE 
            17            150 
  ZBBX MUTATED ZBBX WILD-TYPE 
             8             62 
$`ZBBX MUTATED`
TCGA-18-5592 TCGA-21-1076 TCGA-21-5784 TCGA-22-1012 TCGA-22-4613 TCGA-22-5473 
        3.02        60.89        29.85        14.10        11.77        63.52 
TCGA-22-5492 TCGA-33-4586 TCGA-34-5231 TCGA-34-5236 TCGA-37-4141 TCGA-43-6143 
       16.60        14.07        50.24         9.04         0.39         7.00 
TCGA-60-2715 TCGA-60-2719 TCGA-66-2757 TCGA-66-2773 TCGA-66-2787 
       35.34        30.61         0.99         3.02        40.01 

$`ZBBX WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 
       43.76         6.15         2.79        90.51        27.16       115.59 
TCGA-21-1071 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5786 
       46.88        34.78        15.55         9.30        31.63        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1016 TCGA-22-4591 
       10.82         7.33         4.31         1.74        27.02        20.45 
TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 
       35.08        24.13        38.17        34.75        13.12        19.30 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 
       31.69        64.90        14.60        44.22         0.79        71.34 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-33-4532 TCGA-33-4533 
       11.74        30.08        62.86        56.32        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-6737 
       97.94        43.10       173.79       103.53       141.34        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 
        2.63        61.61        32.84        51.78        32.68        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        0.43         7.82         6.81         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 
       18.08        11.57        18.84         8.48         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       47.87         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
       23.64        11.77        16.96        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        2.01         0.92         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
        1.94        25.97        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  ZBBX MUTATED ZBBX WILD-TYPE 
          0.39           0.10 
  ZBBX MUTATED ZBBX WILD-TYPE 
         63.52         173.79 
  ZBBX MUTATED ZBBX WILD-TYPE 
         14.10          18.46 
[1] "0.4 - 63.5 (14.1)"  "0.1 - 173.8 (18.5)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"ZBBX WILD-TYPE"   "ZBBX MUTATED"   "ZBBX MUTATED" "ZBBX WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
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"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"ZBBX WILD-TYPE"   "ZBBX MUTATED"   "ZBBX MUTATED" "ZBBX WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
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"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
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"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
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"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
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"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
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"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
[1] "hr=" "1.3"
D13V2, continuous
D13V3, binary
                cls
clus               0   1
  ZBBX MUTATED     8   9
  ZBBX WILD-TYPE  39 122
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZBBX MUTATED      8    9
  ZBBX WILD-TYPE   39  122
        clus
vv       ZBBX MUTATED ZBBX WILD-TYPE
  FEMALE            8             39
  MALE              9            122
D13V4, continuous
                vv
clus             LUNG BASALOID SQUAMOUS CELL CARCINOMA
  ZBBX MUTATED                                       1
  ZBBX WILD-TYPE                                     4
                vv
clus             LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  ZBBX MUTATED                                        0
  ZBBX WILD-TYPE                                      1
                vv
clus             LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ZBBX MUTATED                                                            16
  ZBBX WILD-TYPE                                                         156
D13V5, multiclass
                                                             clus
vv                                                            ZBBX MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)           16
                                                             clus
vv                                                            ZBBX WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            156
                vv
clus              T1  T2  T3  T4
  ZBBX MUTATED     7   7   3   0
  ZBBX WILD-TYPE  29 109  11  12
D13V6, multiclass
    clus
vv   ZBBX MUTATED ZBBX WILD-TYPE
  T1            7             29
  T2            7            109
  T3            3             11
  T4            0             12
                vv
clus              N0  N1  N2  N3
  ZBBX MUTATED    15   0   2   0
  ZBBX WILD-TYPE 102  39  15   5
D13V7, multiclass
    clus
vv   ZBBX MUTATED ZBBX WILD-TYPE
  N0           15            102
  N1            0             39
  N2            2             15
  N3            0              5
                vv
clus              M0  M1  MX
  ZBBX MUTATED    17   0   0
  ZBBX WILD-TYPE 148   3   6
D13V8, multiclass
    clus
vv   ZBBX MUTATED ZBBX WILD-TYPE
  M0           17            148
  M1            0              3
  MX            0              6
                vv
clus              I II III+IV
  ZBBX MUTATED   13  2      2
  ZBBX WILD-TYPE 84 36     39
D13V9, multiclass
        clus
vv       ZBBX MUTATED ZBBX WILD-TYPE
  I                13             84
  II                2             36
  III+IV            2             39
D13V10, binary
                cls
clus               0   1
  ZBBX MUTATED     0  17
  ZBBX WILD-TYPE   4 157
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZBBX MUTATED      0   17
  ZBBX WILD-TYPE    4  157
     clus
vv    ZBBX MUTATED ZBBX WILD-TYPE
  NO             0              4
  YES           17            157
D13V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  ZBBX MUTATED                                             8
  ZBBX WILD-TYPE                                          86
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  ZBBX MUTATED                                        5              1
  ZBBX WILD-TYPE                                     38             27
                vv
clus             LIFELONG NON-SMOKER
  ZBBX MUTATED                     2
  ZBBX WILD-TYPE                   6
D13V12, multiclass
                                             clus
vv                                            ZBBX MUTATED ZBBX WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            8             86
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 5             38
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    2              6
D13V13, continuous
                vv
clus              R0  R1  R2  RX
  ZBBX MUTATED    12   0   0   2
  ZBBX WILD-TYPE 135   2   4   8
D13V14, multiclass
    clus
vv   ZBBX MUTATED ZBBX WILD-TYPE
  R0           12            135
  R1            0              2
  R2            0              4
  RX            2              8

Clustering(14) Variable = DPPA4 MUTATION ANALYSIS
D14V1, survival
                 sevent
clus2              0  1
  DPPA4 MUTATED    6  4
  DPPA4 WILD-TYPE 91 66
  DPPA4 MUTATED DPPA4 WILD-TYPE 
             10             157 
  DPPA4 MUTATED DPPA4 WILD-TYPE 
              4              66 
$`DPPA4 MUTATED`
TCGA-18-3419 TCGA-22-5472 TCGA-22-5478 TCGA-34-2608 TCGA-34-5231 TCGA-34-5234 
        1.61        64.90         0.79        32.84        50.24        32.68 
TCGA-39-5027 TCGA-43-6143 TCGA-60-2698 TCGA-85-6561 
       60.76         7.00        10.22         0.79 

$`DPPA4 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 
       11.34        13.02        59.51        28.34        24.92        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5473 
       34.75        13.12        19.30        11.77        31.69        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       14.60        44.22        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-5232 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       61.61        51.78         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
       22.95         5.52         4.96         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        6.81         0.39         3.39        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       55.17        70.03         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       15.58        35.64         0.79        17.88        18.08        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
       18.84         8.48         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 
        0.95         0.59         0.39         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        0.10         2.04         1.02        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 
        0.36 

  DPPA4 MUTATED DPPA4 WILD-TYPE 
           0.79            0.10 
  DPPA4 MUTATED DPPA4 WILD-TYPE 
          64.90          173.79 
  DPPA4 MUTATED DPPA4 WILD-TYPE 
          21.45           17.88 
[1] "0.8 - 64.9 (21.4)"  "0.1 - 173.8 (17.9)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
  "DPPA4 MUTATED"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"DPPA4 WILD-TYPE"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
  "DPPA4 MUTATED"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"DPPA4 WILD-TYPE"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
  "DPPA4 MUTATED"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"DPPA4 WILD-TYPE"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" 
[1] "hr=" "1"  
D14V2, continuous
D14V3, binary
                 cls
clus                0   1
  DPPA4 MUTATED     1  11
  DPPA4 WILD-TYPE  46 120
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DPPA4 MUTATED      1   11
  DPPA4 WILD-TYPE   46  120
        clus
vv       DPPA4 MUTATED DPPA4 WILD-TYPE
  FEMALE             1              46
  MALE              11             120
D14V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  DPPA4 MUTATED                                       1
  DPPA4 WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  DPPA4 MUTATED                                        0
  DPPA4 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  DPPA4 MUTATED                                                            11
  DPPA4 WILD-TYPE                                                         161
D14V5, multiclass
                                                             clus
vv                                                            DPPA4 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            11
                                                             clus
vv                                                            DPPA4 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             161
                 vv
clus               T1  T2  T3  T4
  DPPA4 MUTATED     3   8   0   1
  DPPA4 WILD-TYPE  33 108  14  11
D14V6, multiclass
    clus
vv   DPPA4 MUTATED DPPA4 WILD-TYPE
  T1             3              33
  T2             8             108
  T3             0              14
  T4             1              11
                 vv
clus               N0  N1  N2  N3
  DPPA4 MUTATED    10   2   0   0
  DPPA4 WILD-TYPE 107  37  17   5
D14V7, multiclass
    clus
vv   DPPA4 MUTATED DPPA4 WILD-TYPE
  N0            10             107
  N1             2              37
  N2             0              17
  N3             0               5
                 vv
clus               M0  M1  MX
  DPPA4 MUTATED    12   0   0
  DPPA4 WILD-TYPE 153   3   6
D14V8, multiclass
    clus
vv   DPPA4 MUTATED DPPA4 WILD-TYPE
  M0            12             153
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  DPPA4 MUTATED    8  4      0
  DPPA4 WILD-TYPE 89 34     41
D14V9, multiclass
        clus
vv       DPPA4 MUTATED DPPA4 WILD-TYPE
  I                  8              89
  II                 4              34
  III+IV             0              41
D14V10, binary
                 cls
clus                0   1
  DPPA4 MUTATED     0  12
  DPPA4 WILD-TYPE   4 162
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DPPA4 MUTATED      0   12
  DPPA4 WILD-TYPE    4  162
     clus
vv    DPPA4 MUTATED DPPA4 WILD-TYPE
  NO              0               4
  YES            12             162
D14V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  DPPA4 MUTATED                                             8
  DPPA4 WILD-TYPE                                          86
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  DPPA4 MUTATED                                        3              0
  DPPA4 WILD-TYPE                                     40             28
                 vv
clus              LIFELONG NON-SMOKER
  DPPA4 MUTATED                     1
  DPPA4 WILD-TYPE                   7
D14V12, multiclass
                                             clus
vv                                            DPPA4 MUTATED DPPA4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             8              86
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              40
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     1               7
D14V13, continuous
                 vv
clus               R0  R1  R2  RX
  DPPA4 MUTATED     8   1   0   2
  DPPA4 WILD-TYPE 139   1   4   8
D14V14, multiclass
    clus
vv   DPPA4 MUTATED DPPA4 WILD-TYPE
  R0             8             139
  R1             1               1
  R2             0               4
  RX             2               8

Clustering(15) Variable = ASB5 MUTATION ANALYSIS
D15V1, survival
                sevent
clus2             0  1
  ASB5 MUTATED    6  3
  ASB5 WILD-TYPE 91 67
  ASB5 MUTATED ASB5 WILD-TYPE 
             9            158 
  ASB5 MUTATED ASB5 WILD-TYPE 
             3             67 
$`ASB5 MUTATED`
TCGA-18-3409 TCGA-18-3412 TCGA-22-4613 TCGA-33-4533 TCGA-33-4538 TCGA-39-5016 
       79.46        11.34        11.77       114.05        97.94        74.07 
TCGA-66-2755 TCGA-66-2766 TCGA-66-2768 
        0.92         1.02         2.01 

$`ASB5 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3414 
       12.16         4.47        81.07         4.80        46.52        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       13.12        19.30        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       56.32        16.60        82.98        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 
      141.34        14.07        19.76         2.63        61.61        32.84 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         4.96         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5019 TCGA-39-5021 
        7.82         6.81         0.39         3.39        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
       27.35        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
       21.07         0.99         2.01         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2770 TCGA-66-2771 
       25.02         0.99         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  ASB5 MUTATED ASB5 WILD-TYPE 
          0.92           0.10 
  ASB5 MUTATED ASB5 WILD-TYPE 
        114.05         173.79 
  ASB5 MUTATED ASB5 WILD-TYPE 
         11.77          17.98 
[1] "0.9 - 114.0 (11.8)" "0.1 - 173.8 (18.0)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED" "ASB5 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "ASB5 MUTATED" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED"   "ASB5 MUTATED" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"ASB5 WILD-TYPE"   "ASB5 MUTATED" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED" "ASB5 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
  "ASB5 MUTATED" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED" "ASB5 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "ASB5 MUTATED" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED"   "ASB5 MUTATED" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"ASB5 WILD-TYPE"   "ASB5 MUTATED" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED" "ASB5 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
  "ASB5 MUTATED" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED" "ASB5 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "ASB5 MUTATED" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED"   "ASB5 MUTATED" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"ASB5 WILD-TYPE"   "ASB5 MUTATED" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED" "ASB5 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
  "ASB5 MUTATED" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
[1] "hr=" "2.1"
D15V2, continuous
D15V3, binary
                cls
clus               0   1
  ASB5 MUTATED     2   7
  ASB5 WILD-TYPE  45 124
[1] "tbl2"
                cls
clus             [,1] [,2]
  ASB5 MUTATED      2    7
  ASB5 WILD-TYPE   45  124
        clus
vv       ASB5 MUTATED ASB5 WILD-TYPE
  FEMALE            2             45
  MALE              7            124
D15V4, continuous
[1] "Remove cluster labels:" "ASB5 MUTATED"          
clus
  ASB5 MUTATED ASB5 WILD-TYPE 
             1             35 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3410     TCGA-18-3414 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-18-3419     TCGA-21-5782     TCGA-21-5787     TCGA-22-4591 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-4593     TCGA-22-4595     TCGA-22-4599     TCGA-22-4601 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-4604     TCGA-22-5472     TCGA-22-5473     TCGA-22-5474 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-5477     TCGA-22-5478     TCGA-22-5480     TCGA-22-5482 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-5485     TCGA-22-5489     TCGA-22-5491     TCGA-22-5492 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-34-5234     TCGA-37-4133     TCGA-37-4135     TCGA-37-5819 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-60-2698     TCGA-60-2712     TCGA-60-2715     TCGA-60-2725 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-60-2726     TCGA-70-6722     TCGA-70-6723 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
                vv
clus             LUNG BASALOID SQUAMOUS CELL CARCINOMA
  ASB5 MUTATED                                       2
  ASB5 WILD-TYPE                                     3
                vv
clus             LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  ASB5 MUTATED                                        0
  ASB5 WILD-TYPE                                      1
                vv
clus             LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ASB5 MUTATED                                                             7
  ASB5 WILD-TYPE                                                         165
D15V5, multiclass
                                                             clus
vv                                                            ASB5 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            7
                                                             clus
vv                                                            ASB5 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            165
                vv
clus              T1  T2  T3  T4
  ASB5 MUTATED     2   7   0   0
  ASB5 WILD-TYPE  34 109  14  12
D15V6, multiclass
    clus
vv   ASB5 MUTATED ASB5 WILD-TYPE
  T1            2             34
  T2            7            109
  T3            0             14
  T4            0             12
                vv
clus              N0  N1  N2  N3
  ASB5 MUTATED     5   2   2   0
  ASB5 WILD-TYPE 112  37  15   5
D15V7, multiclass
    clus
vv   ASB5 MUTATED ASB5 WILD-TYPE
  N0            5            112
  N1            2             37
  N2            2             15
  N3            0              5
                vv
clus              M0  M1  MX
  ASB5 MUTATED     9   0   0
  ASB5 WILD-TYPE 156   3   6
D15V8, multiclass
    clus
vv   ASB5 MUTATED ASB5 WILD-TYPE
  M0            9            156
  M1            0              3
  MX            0              6
                vv
clus              I II III+IV
  ASB5 MUTATED    4  2      2
  ASB5 WILD-TYPE 93 36     39
D15V9, multiclass
        clus
vv       ASB5 MUTATED ASB5 WILD-TYPE
  I                 4             93
  II                2             36
  III+IV            2             39
D15V10, binary
                cls
clus               0   1
  ASB5 MUTATED     0   9
  ASB5 WILD-TYPE   4 165
[1] "tbl2"
                cls
clus             [,1] [,2]
  ASB5 MUTATED      0    9
  ASB5 WILD-TYPE    4  165
     clus
vv    ASB5 MUTATED ASB5 WILD-TYPE
  NO             0              4
  YES            9            165
D15V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  ASB5 MUTATED                                             3
  ASB5 WILD-TYPE                                          91
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  ASB5 MUTATED                                        4              1
  ASB5 WILD-TYPE                                     39             27
                vv
clus             LIFELONG NON-SMOKER
  ASB5 MUTATED                     1
  ASB5 WILD-TYPE                   7
D15V12, multiclass
                                             clus
vv                                            ASB5 MUTATED ASB5 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            3             91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 4             39
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    1              7
D15V13, continuous
                vv
clus              R0  R1  R2  RX
  ASB5 MUTATED     8   0   0   1
  ASB5 WILD-TYPE 139   2   4   9
D15V14, multiclass
    clus
vv   ASB5 MUTATED ASB5 WILD-TYPE
  R0            8            139
  R1            0              2
  R2            0              4
  RX            1              9

Clustering(16) Variable = PDYN MUTATION ANALYSIS
D16V1, survival
                sevent
clus2             0  1
  PDYN MUTATED    6  3
  PDYN WILD-TYPE 91 67
  PDYN MUTATED PDYN WILD-TYPE 
             9            158 
  PDYN MUTATED PDYN WILD-TYPE 
             3             67 
$`PDYN MUTATED`
TCGA-21-1070 TCGA-21-5787 TCGA-22-5477 TCGA-34-5239 TCGA-34-5928 TCGA-56-6546 
      115.59        10.82        44.22        10.82         5.52         1.02 
TCGA-60-2724 TCGA-66-2788 TCGA-66-2793 
        1.22        22.98        10.06 

$`PDYN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       29.85        21.57         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       14.60         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
        7.73        14.07        22.95         4.96         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-60-2698 
        0.39         2.07        28.93         0.10         2.04        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
       22.78        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        4.04         5.03        30.02        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  PDYN MUTATED PDYN WILD-TYPE 
          1.02           0.10 
  PDYN MUTATED PDYN WILD-TYPE 
        115.59         173.79 
  PDYN MUTATED PDYN WILD-TYPE 
         10.82          18.46 
[1] "1.0 - 115.6 (10.8)" "0.1 - 173.8 (18.5)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"PDYN WILD-TYPE" "PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE"   "PDYN MUTATED" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
  "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE"   "PDYN MUTATED" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"PDYN WILD-TYPE" "PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE"   "PDYN MUTATED" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
  "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE"   "PDYN MUTATED" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"PDYN WILD-TYPE" "PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE"   "PDYN MUTATED" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
  "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE"   "PDYN MUTATED" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
[1] "hr=" "1.1"
D16V2, continuous
D16V3, binary
                cls
clus               0   1
  PDYN MUTATED     2   8
  PDYN WILD-TYPE  45 123
[1] "tbl2"
                cls
clus             [,1] [,2]
  PDYN MUTATED      2    8
  PDYN WILD-TYPE   45  123
        clus
vv       PDYN MUTATED PDYN WILD-TYPE
  FEMALE            2             45
  MALE              8            123
D16V4, continuous
[1] "Remove cluster labels:" "PDYN MUTATED"          
clus
  PDYN MUTATED PDYN WILD-TYPE 
             2             34 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3410     TCGA-18-3414 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-3419     TCGA-21-5782     TCGA-22-4591     TCGA-22-4593 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-4595     TCGA-22-4599     TCGA-22-4601     TCGA-22-4604 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5472     TCGA-22-5473     TCGA-22-5474 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-5478     TCGA-22-5480     TCGA-22-5482     TCGA-22-5485 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-5489     TCGA-22-5491     TCGA-22-5492     TCGA-34-5234 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-37-4133     TCGA-37-4135     TCGA-37-5819     TCGA-60-2698 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-60-2712     TCGA-60-2715     TCGA-60-2725     TCGA-60-2726 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-70-6722     TCGA-70-6723 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" 
                vv
clus             LUNG BASALOID SQUAMOUS CELL CARCINOMA
  PDYN MUTATED                                       0
  PDYN WILD-TYPE                                     5
                vv
clus             LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  PDYN MUTATED                                        0
  PDYN WILD-TYPE                                      1
                vv
clus             LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PDYN MUTATED                                                            10
  PDYN WILD-TYPE                                                         162
D16V5, multiclass
                                                             clus
vv                                                            PDYN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)           10
                                                             clus
vv                                                            PDYN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            162
                vv
clus              T1  T2  T3  T4
  PDYN MUTATED     1   4   2   3
  PDYN WILD-TYPE  35 112  12   9
D16V6, multiclass
    clus
vv   PDYN MUTATED PDYN WILD-TYPE
  T1            1             35
  T2            4            112
  T3            2             12
  T4            3              9
                vv
clus              N0  N1  N2  N3
  PDYN MUTATED     6   3   1   0
  PDYN WILD-TYPE 111  36  16   5
D16V7, multiclass
    clus
vv   PDYN MUTATED PDYN WILD-TYPE
  N0            6            111
  N1            3             36
  N2            1             16
  N3            0              5
                vv
clus              M0  M1  MX
  PDYN MUTATED     9   0   1
  PDYN WILD-TYPE 156   3   5
D16V8, multiclass
    clus
vv   PDYN MUTATED PDYN WILD-TYPE
  M0            9            156
  M1            0              3
  MX            1              5
                vv
clus              I II III+IV
  PDYN MUTATED    2  2      5
  PDYN WILD-TYPE 95 36     36
D16V9, multiclass
        clus
vv       PDYN MUTATED PDYN WILD-TYPE
  I                 2             95
  II                2             36
  III+IV            5             36
D16V10, binary
                cls
clus               0   1
  PDYN MUTATED     1   9
  PDYN WILD-TYPE   3 165
[1] "tbl2"
                cls
clus             [,1] [,2]
  PDYN MUTATED      1    9
  PDYN WILD-TYPE    3  165
     clus
vv    PDYN MUTATED PDYN WILD-TYPE
  NO             1              3
  YES            9            165
D16V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  PDYN MUTATED                                             7
  PDYN WILD-TYPE                                          87
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  PDYN MUTATED                                        1              1
  PDYN WILD-TYPE                                     42             27
                vv
clus             LIFELONG NON-SMOKER
  PDYN MUTATED                     0
  PDYN WILD-TYPE                   8
D16V12, multiclass
                                             clus
vv                                            PDYN MUTATED PDYN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            7             87
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 1             42
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    0              8
D16V13, continuous
                vv
clus              R0  R1  R2  RX
  PDYN MUTATED     6   1   0   0
  PDYN WILD-TYPE 141   1   4  10
D16V14, multiclass
    clus
vv   PDYN MUTATED PDYN WILD-TYPE
  R0            6            141
  R1            1              1
  R2            0              4
  RX            0             10

Clustering(17) Variable = REG1B MUTATION ANALYSIS
D17V1, survival
                 sevent
clus2              0  1
  REG1B MUTATED    6  4
  REG1B WILD-TYPE 91 66
  REG1B MUTATED REG1B WILD-TYPE 
             10             157 
  REG1B MUTATED REG1B WILD-TYPE 
              4              66 
$`REG1B MUTATED`
TCGA-18-3409 TCGA-18-4083 TCGA-22-5473 TCGA-34-2600 TCGA-34-5232 TCGA-34-5928 
       79.46         6.15        63.52        61.61        51.78         5.52 
TCGA-39-5037 TCGA-66-2781 TCGA-66-2789 TCGA-85-6560 
        0.79         3.98         4.04         0.36 

$`REG1B WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 
       13.12        19.30        11.77        31.69        64.90        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       32.84        50.24        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
       14.07        22.95         4.96         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        6.81         0.39         3.39        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       27.35        15.58        35.64        17.88        18.08        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       18.84         8.48         7.00         6.02         2.79         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 
       28.93         0.10         2.04         1.02        10.22        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6561 
        0.79 

  REG1B MUTATED REG1B WILD-TYPE 
           0.36            0.10 
  REG1B MUTATED REG1B WILD-TYPE 
          79.46          173.79 
  REG1B MUTATED REG1B WILD-TYPE 
          5.835          18.080 
[1] "0.4 - 79.5 (5.8)"   "0.1 - 173.8 (18.1)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
[1] "hr=" "1"  
D17V2, continuous
D17V3, binary
                 cls
clus                0   1
  REG1B MUTATED     3   8
  REG1B WILD-TYPE  44 123
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG1B MUTATED      3    8
  REG1B WILD-TYPE   44  123
        clus
vv       REG1B MUTATED REG1B WILD-TYPE
  FEMALE             3              44
  MALE               8             123
D17V4, continuous
[1] "Remove cluster labels:" "REG1B MUTATED"         
clus
  REG1B MUTATED REG1B WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-4604      TCGA-22-4613      TCGA-22-5472      TCGA-22-5474 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  REG1B MUTATED                                       1
  REG1B WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  REG1B MUTATED                                        0
  REG1B WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  REG1B MUTATED                                                            10
  REG1B WILD-TYPE                                                         162
D17V5, multiclass
                                                             clus
vv                                                            REG1B MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            10
                                                             clus
vv                                                            REG1B WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             162
                 vv
clus               T1  T2  T3  T4
  REG1B MUTATED     5   5   1   0
  REG1B WILD-TYPE  31 111  13  12
D17V6, multiclass
    clus
vv   REG1B MUTATED REG1B WILD-TYPE
  T1             5              31
  T2             5             111
  T3             1              13
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  REG1B MUTATED     5   5   0   1
  REG1B WILD-TYPE 112  34  17   4
D17V7, multiclass
    clus
vv   REG1B MUTATED REG1B WILD-TYPE
  N0             5             112
  N1             5              34
  N2             0              17
  N3             1               4
                 vv
clus               M0  M1  MX
  REG1B MUTATED    11   0   0
  REG1B WILD-TYPE 154   3   6
D17V8, multiclass
    clus
vv   REG1B MUTATED REG1B WILD-TYPE
  M0            11             154
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  REG1B MUTATED    3  5      2
  REG1B WILD-TYPE 94 33     39
D17V9, multiclass
        clus
vv       REG1B MUTATED REG1B WILD-TYPE
  I                  3              94
  II                 5              33
  III+IV             2              39
D17V10, binary
                 cls
clus                0   1
  REG1B MUTATED     0  11
  REG1B WILD-TYPE   4 163
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG1B MUTATED      0   11
  REG1B WILD-TYPE    4  163
     clus
vv    REG1B MUTATED REG1B WILD-TYPE
  NO              0               4
  YES            11             163
D17V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  REG1B MUTATED                                             5
  REG1B WILD-TYPE                                          89
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  REG1B MUTATED                                        3              2
  REG1B WILD-TYPE                                     40             26
                 vv
clus              LIFELONG NON-SMOKER
  REG1B MUTATED                     0
  REG1B WILD-TYPE                   8
D17V12, multiclass
                                             clus
vv                                            REG1B MUTATED REG1B WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              40
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0               8
D17V13, continuous
                 vv
clus               R0  R1  R2  RX
  REG1B MUTATED     9   0   0   0
  REG1B WILD-TYPE 138   2   4  10
D17V14, multiclass
    clus
vv   REG1B MUTATED REG1B WILD-TYPE
  R0             9             138
  R1             0               2
  R2             0               4
  RX             0              10

Clustering(18) Variable = CYP11B1 MUTATION ANALYSIS
D18V1, survival
                   sevent
clus2                0  1
  CYP11B1 MUTATED    4 11
  CYP11B1 WILD-TYPE 93 59
  CYP11B1 MUTATED CYP11B1 WILD-TYPE 
               15               152 
  CYP11B1 MUTATED CYP11B1 WILD-TYPE 
               11                59 
$`CYP11B1 MUTATED`
TCGA-21-1077 TCGA-21-5787 TCGA-22-1016 TCGA-22-4595 TCGA-22-5491 TCGA-33-4566 
       34.78        10.82        27.02        24.13        56.32       173.79 
TCGA-43-6771 TCGA-51-4079 TCGA-51-4080 TCGA-60-2719 TCGA-60-2726 TCGA-66-2766 
        5.42         0.39         0.39        30.61        11.77         1.02 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2789 
       24.95         1.94         4.04 

$`CYP11B1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
      115.59        46.88        60.89        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       29.85        21.57         7.33         4.31         1.74        14.10 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 
       20.45        35.08        38.17        34.75        13.12        19.30 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 
        0.79        71.34        11.74        30.08        62.86        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 
       82.98       114.05        97.94        43.10       103.53       141.34 
TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 
       14.07        19.76         2.63        61.61        32.84        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
       22.95         5.52         4.96         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        6.81         0.39         3.39        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
       27.35        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        9.96         0.95         0.59         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2720 
       55.40        29.19         9.01        47.87        35.34         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 
       26.07        24.10        22.78         1.22        23.64        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 
        0.99        20.98        25.02         0.99         2.01         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.03         3.98        12.00        25.97        40.01        22.98 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  CYP11B1 MUTATED CYP11B1 WILD-TYPE 
             0.39              0.10 
  CYP11B1 MUTATED CYP11B1 WILD-TYPE 
           173.79            141.34 
  CYP11B1 MUTATED CYP11B1 WILD-TYPE 
            11.77             17.98 
[1] "0.4 - 173.8 (11.8)" "0.1 - 141.3 (18.0)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
  "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED"   "CYP11B1 MUTATED" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
  "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED"   "CYP11B1 MUTATED" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
  "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED"   "CYP11B1 MUTATED" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
[1] "hr=" "2"  
D18V2, continuous
D18V3, binary
                   cls
clus                  0   1
  CYP11B1 MUTATED     2  13
  CYP11B1 WILD-TYPE  45 118
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CYP11B1 MUTATED      2   13
  CYP11B1 WILD-TYPE   45  118
        clus
vv       CYP11B1 MUTATED CYP11B1 WILD-TYPE
  FEMALE               2                45
  MALE                13               118
D18V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  CYP11B1 MUTATED                                       1
  CYP11B1 WILD-TYPE                                     4
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  CYP11B1 MUTATED                                        0
  CYP11B1 WILD-TYPE                                      1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CYP11B1 MUTATED                                                            14
  CYP11B1 WILD-TYPE                                                         158
D18V5, multiclass
                                                             clus
vv                                                            CYP11B1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              14
                                                             clus
vv                                                            CYP11B1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               158
                   vv
clus                 T1  T2  T3  T4
  CYP11B1 MUTATED     3  10   1   1
  CYP11B1 WILD-TYPE  33 106  13  11
D18V6, multiclass
    clus
vv   CYP11B1 MUTATED CYP11B1 WILD-TYPE
  T1               3                33
  T2              10               106
  T3               1                13
  T4               1                11
                   vv
clus                 N0  N1  N2  N3
  CYP11B1 MUTATED     7   3   3   2
  CYP11B1 WILD-TYPE 110  36  14   3
D18V7, multiclass
    clus
vv   CYP11B1 MUTATED CYP11B1 WILD-TYPE
  N0               7               110
  N1               3                36
  N2               3                14
  N3               2                 3
                   vv
clus                 M0  M1  MX
  CYP11B1 MUTATED    11   0   1
  CYP11B1 WILD-TYPE 154   3   5
D18V8, multiclass
    clus
vv   CYP11B1 MUTATED CYP11B1 WILD-TYPE
  M0              11               154
  M1               0                 3
  MX               1                 5
                   vv
clus                 I II III+IV
  CYP11B1 MUTATED    7  2      6
  CYP11B1 WILD-TYPE 90 36     35
D18V9, multiclass
        clus
vv       CYP11B1 MUTATED CYP11B1 WILD-TYPE
  I                    7                90
  II                   2                36
  III+IV               6                35
D18V10, binary
                   cls
clus                  0   1
  CYP11B1 MUTATED     2  13
  CYP11B1 WILD-TYPE   2 161
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CYP11B1 MUTATED      2   13
  CYP11B1 WILD-TYPE    2  161
     clus
vv    CYP11B1 MUTATED CYP11B1 WILD-TYPE
  NO                2                 2
  YES              13               161
D18V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  CYP11B1 MUTATED                                             9
  CYP11B1 WILD-TYPE                                          85
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  CYP11B1 MUTATED                                        3              3
  CYP11B1 WILD-TYPE                                     40             25
                   vv
clus                LIFELONG NON-SMOKER
  CYP11B1 MUTATED                     0
  CYP11B1 WILD-TYPE                   8
D18V12, multiclass
                                             clus
vv                                            CYP11B1 MUTATED CYP11B1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               9                85
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    3                40
  CURRENT SMOKER                                            3                25
  LIFELONG NON-SMOKER                                       0                 8
D18V13, continuous
                   vv
clus                 R0  R1  R2  RX
  CYP11B1 MUTATED    13   0   1   1
  CYP11B1 WILD-TYPE 134   2   3   9
D18V14, multiclass
    clus
vv   CYP11B1 MUTATED CYP11B1 WILD-TYPE
  R0              13               134
  R1               0                 2
  R2               1                 3
  RX               1                 9

Clustering(19) Variable = CRB1 MUTATION ANALYSIS
D19V1, survival
                sevent
clus2             0  1
  CRB1 MUTATED   12 10
  CRB1 WILD-TYPE 85 60
  CRB1 MUTATED CRB1 WILD-TYPE 
            22            145 
  CRB1 MUTATED CRB1 WILD-TYPE 
            10             60 
$`CRB1 MUTATED`
TCGA-18-3409 TCGA-18-5592 TCGA-21-1071 TCGA-21-5784 TCGA-22-1002 TCGA-22-4599 
       79.46         3.02        46.88        29.85         4.31        38.17 
TCGA-22-4613 TCGA-22-5480 TCGA-22-5485 TCGA-33-4566 TCGA-33-4586 TCGA-34-5927 
       11.77        71.34        30.08       173.79        14.07        22.95 
TCGA-37-5819 TCGA-39-5031 TCGA-43-6770 TCGA-60-2698 TCGA-60-2710 TCGA-66-2756 
        3.39        27.35         2.79        10.22        55.40         0.99 
TCGA-66-2763 TCGA-66-2788 TCGA-66-2791 TCGA-66-2800 
        0.99        22.98         5.03        49.05 

$`CRB1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1076 
        6.15         2.79        90.51        27.16       115.59        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5786 TCGA-21-5787 
       34.78        15.55         9.30        31.63        21.57        10.82 
TCGA-22-0944 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 
        7.33         1.74        14.10        27.02        20.45        35.08 
TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 
       24.13        34.75        13.12        19.30        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5482 TCGA-22-5489 
       63.52        14.60        44.22         0.79        11.74        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4582 TCGA-33-4583 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 
      103.53       141.34        19.76         2.63        61.61        32.84 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
       14.07         5.52         4.96         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        6.81         0.39        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5035 
       70.03        60.76         1.71        24.33         1.94        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        8.48         7.00         6.02         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2711 
        2.04         1.02        21.70        68.45        49.48        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       20.98        25.02         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2789 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-85-6560 
        4.04        30.02        10.06        54.08         4.01         0.36 
TCGA-85-6561 
        0.79 

  CRB1 MUTATED CRB1 WILD-TYPE 
          0.99           0.10 
  CRB1 MUTATED CRB1 WILD-TYPE 
        173.79         141.34 
  CRB1 MUTATED CRB1 WILD-TYPE 
        22.965         16.960 
[1] "1.0 - 173.8 (23.0)" "0.1 - 141.3 (17.0)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE"   "CRB1 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE"   "CRB1 MUTATED" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE"   "CRB1 MUTATED" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE"   "CRB1 MUTATED" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE"   "CRB1 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE"   "CRB1 MUTATED" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE"   "CRB1 MUTATED" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE"   "CRB1 MUTATED" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE"   "CRB1 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE"   "CRB1 MUTATED" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE"   "CRB1 MUTATED" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE"   "CRB1 MUTATED" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
[1] "hr=" "1.2"
D19V2, continuous
D19V3, binary
                cls
clus               0   1
  CRB1 MUTATED    10  13
  CRB1 WILD-TYPE  37 118
[1] "tbl2"
                cls
clus             [,1] [,2]
  CRB1 MUTATED     10   13
  CRB1 WILD-TYPE   37  118
        clus
vv       CRB1 MUTATED CRB1 WILD-TYPE
  FEMALE           10             37
  MALE             13            118
D19V4, continuous
                vv
clus             LUNG BASALOID SQUAMOUS CELL CARCINOMA
  CRB1 MUTATED                                       1
  CRB1 WILD-TYPE                                     4
                vv
clus             LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  CRB1 MUTATED                                        0
  CRB1 WILD-TYPE                                      1
                vv
clus             LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CRB1 MUTATED                                                            22
  CRB1 WILD-TYPE                                                         150
D19V5, multiclass
                                                             clus
vv                                                            CRB1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)           22
                                                             clus
vv                                                            CRB1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            150
                vv
clus              T1  T2  T3  T4
  CRB1 MUTATED     8  12   1   2
  CRB1 WILD-TYPE  28 104  13  10
D19V6, multiclass
    clus
vv   CRB1 MUTATED CRB1 WILD-TYPE
  T1            8             28
  T2           12            104
  T3            1             13
  T4            2             10
                vv
clus             N0 N1 N2 N3
  CRB1 MUTATED   18  2  2  1
  CRB1 WILD-TYPE 99 37 15  4
D19V7, multiclass
    clus
vv   CRB1 MUTATED CRB1 WILD-TYPE
  N0           18             99
  N1            2             37
  N2            2             15
  N3            1              4
                vv
clus              M0  M1  MX
  CRB1 MUTATED    22   0   1
  CRB1 WILD-TYPE 143   3   5
D19V8, multiclass
    clus
vv   CRB1 MUTATED CRB1 WILD-TYPE
  M0           22            143
  M1            0              3
  MX            1              5
                vv
clus              I II III+IV
  CRB1 MUTATED   13  4      5
  CRB1 WILD-TYPE 84 34     36
D19V9, multiclass
        clus
vv       CRB1 MUTATED CRB1 WILD-TYPE
  I                13             84
  II                4             34
  III+IV            5             36
D19V10, binary
                cls
clus               0   1
  CRB1 MUTATED     0  23
  CRB1 WILD-TYPE   4 151
[1] "tbl2"
                cls
clus             [,1] [,2]
  CRB1 MUTATED      0   23
  CRB1 WILD-TYPE    4  151
     clus
vv    CRB1 MUTATED CRB1 WILD-TYPE
  NO             0              4
  YES           23            151
D19V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  CRB1 MUTATED                                            12
  CRB1 WILD-TYPE                                          82
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  CRB1 MUTATED                                        4              6
  CRB1 WILD-TYPE                                     39             22
                vv
clus             LIFELONG NON-SMOKER
  CRB1 MUTATED                     0
  CRB1 WILD-TYPE                   8
D19V12, multiclass
                                             clus
vv                                            CRB1 MUTATED CRB1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           12             82
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 4             39
  CURRENT SMOKER                                         6             22
  LIFELONG NON-SMOKER                                    0              8
D19V13, continuous
                vv
clus              R0  R1  R2  RX
  CRB1 MUTATED    17   1   0   2
  CRB1 WILD-TYPE 130   1   4   8
D19V14, multiclass
    clus
vv   CRB1 MUTATED CRB1 WILD-TYPE
  R0           17            130
  R1            1              1
  R2            0              4
  RX            2              8

Clustering(20) Variable = OR6F1 MUTATION ANALYSIS
D20V1, survival
                 sevent
clus2              0  1
  OR6F1 MUTATED    5  6
  OR6F1 WILD-TYPE 92 64
  OR6F1 MUTATED OR6F1 WILD-TYPE 
             11             156 
  OR6F1 MUTATED OR6F1 WILD-TYPE 
              6              64 
$`OR6F1 MUTATED`
TCGA-18-5592 TCGA-21-5782 TCGA-33-4586 TCGA-34-5232 TCGA-37-4141 TCGA-56-1622 
        3.02        31.63        14.07        51.78         0.39        28.93 
TCGA-60-2698 TCGA-66-2727 TCGA-66-2785 TCGA-66-2789 TCGA-85-6561 
       10.22        16.96         1.94         4.04         0.79 

$`OR6F1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 
       43.76         6.15         2.79        90.51        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5784 
       46.88        60.89        34.78        15.55         9.30        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-6737 TCGA-34-2596 
       43.10       173.79       103.53       141.34        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       61.61        32.84        50.24        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        0.43         7.82         6.81         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 
        0.39         2.07         0.10         2.04         1.02        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
        1.22        23.64        11.77        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2791 
       12.00        24.95        25.97        40.01        22.98         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 

  OR6F1 MUTATED OR6F1 WILD-TYPE 
           0.39            0.10 
  OR6F1 MUTATED OR6F1 WILD-TYPE 
          51.78          173.79 
  OR6F1 MUTATED OR6F1 WILD-TYPE 
          10.22           18.92 
[1] "0.4 - 51.8 (10.2)"  "0.1 - 173.8 (18.9)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" 
[1] "hr=" "2.3"
D20V2, continuous
D20V3, binary
                 cls
clus                0   1
  OR6F1 MUTATED     4   9
  OR6F1 WILD-TYPE  43 122
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6F1 MUTATED      4    9
  OR6F1 WILD-TYPE   43  122
        clus
vv       OR6F1 MUTATED OR6F1 WILD-TYPE
  FEMALE             4              43
  MALE               9             122
D20V4, continuous
[1] "Remove cluster labels:" "OR6F1 MUTATED"         
clus
  OR6F1 MUTATED OR6F1 WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5787      TCGA-22-4591      TCGA-22-4593 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-4595      TCGA-22-4599      TCGA-22-4601      TCGA-22-4604 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2725      TCGA-60-2726 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR6F1 MUTATED                                       0
  OR6F1 WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR6F1 MUTATED                                        0
  OR6F1 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR6F1 MUTATED                                                            13
  OR6F1 WILD-TYPE                                                         159
D20V5, multiclass
                                                             clus
vv                                                            OR6F1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            13
                                                             clus
vv                                                            OR6F1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             159
                 vv
clus               T1  T2  T3  T4
  OR6F1 MUTATED     4   7   1   1
  OR6F1 WILD-TYPE  32 109  13  11
D20V6, multiclass
    clus
vv   OR6F1 MUTATED OR6F1 WILD-TYPE
  T1             4              32
  T2             7             109
  T3             1              13
  T4             1              11
                 vv
clus               N0  N1  N2  N3
  OR6F1 MUTATED     9   2   1   1
  OR6F1 WILD-TYPE 108  37  16   4
D20V7, multiclass
    clus
vv   OR6F1 MUTATED OR6F1 WILD-TYPE
  N0             9             108
  N1             2              37
  N2             1              16
  N3             1               4
                 vv
clus               M0  M1  MX
  OR6F1 MUTATED    13   0   0
  OR6F1 WILD-TYPE 152   3   6
D20V8, multiclass
    clus
vv   OR6F1 MUTATED OR6F1 WILD-TYPE
  M0            13             152
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  OR6F1 MUTATED    6  5      2
  OR6F1 WILD-TYPE 91 33     39
D20V9, multiclass
        clus
vv       OR6F1 MUTATED OR6F1 WILD-TYPE
  I                  6              91
  II                 5              33
  III+IV             2              39
D20V10, binary
                 cls
clus                0   1
  OR6F1 MUTATED     0  13
  OR6F1 WILD-TYPE   4 161
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6F1 MUTATED      0   13
  OR6F1 WILD-TYPE    4  161
     clus
vv    OR6F1 MUTATED OR6F1 WILD-TYPE
  NO              0               4
  YES            13             161
D20V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR6F1 MUTATED                                             9
  OR6F1 WILD-TYPE                                          85
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR6F1 MUTATED                                        2              0
  OR6F1 WILD-TYPE                                     41             28
                 vv
clus              LIFELONG NON-SMOKER
  OR6F1 MUTATED                     1
  OR6F1 WILD-TYPE                   7
D20V12, multiclass
                                             clus
vv                                            OR6F1 MUTATED OR6F1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             9              85
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     1               7
D20V13, continuous
                 vv
clus               R0  R1  R2  RX
  OR6F1 MUTATED     9   1   0   1
  OR6F1 WILD-TYPE 138   1   4   9
D20V14, multiclass
    clus
vv   OR6F1 MUTATED OR6F1 WILD-TYPE
  R0             9             138
  R1             1               1
  R2             0               4
  RX             1               9

Clustering(21) Variable = ESRRG MUTATION ANALYSIS
D21V1, survival
                 sevent
clus2              0  1
  ESRRG MUTATED    8  4
  ESRRG WILD-TYPE 89 66
  ESRRG MUTATED ESRRG WILD-TYPE 
             12             155 
  ESRRG MUTATED ESRRG WILD-TYPE 
              4              66 
$`ESRRG MUTATED`
TCGA-21-5786 TCGA-22-5473 TCGA-33-4566 TCGA-37-3789 TCGA-37-4133 TCGA-39-5029 
       21.57        63.52       173.79         0.43         7.82        24.33 
TCGA-43-5668 TCGA-60-2709 TCGA-66-2755 TCGA-66-2771 TCGA-66-2781 TCGA-66-2782 
        8.48        49.48         0.92        19.00         3.98        12.00 

$`ESRRG WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       31.63        29.85        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
       43.10       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        3.95         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5030 
       68.58        55.17        70.03        60.76         1.71         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
       27.35        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       11.57        18.84         7.00         6.02         2.79         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 
       28.93         0.10         2.04         1.02        10.22        21.70 
TCGA-60-2708 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       68.45        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       30.61         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
       23.64        11.77        16.96        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        2.01         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2773 
        2.01         1.02         2.01         2.01        23.01         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
        2.01        19.00        12.03        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  ESRRG MUTATED ESRRG WILD-TYPE 
           0.43            0.10 
  ESRRG MUTATED ESRRG WILD-TYPE 
         173.79          141.34 
  ESRRG MUTATED ESRRG WILD-TYPE 
          15.50           17.88 
[1] "0.4 - 173.8 (15.5)" "0.1 - 141.3 (17.9)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" "ESRRG WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ESRRG WILD-TYPE"   "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "ESRRG MUTATED"   "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
  "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" "ESRRG WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
  "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" "ESRRG WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" "ESRRG WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ESRRG WILD-TYPE"   "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "ESRRG MUTATED"   "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
  "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" "ESRRG WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
  "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" "ESRRG WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" "ESRRG WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ESRRG WILD-TYPE"   "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "ESRRG MUTATED"   "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
  "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" "ESRRG WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
  "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" "ESRRG WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
[1] "hr=" "1.8"
D21V2, continuous
D21V3, binary
                 cls
clus                0   1
  ESRRG MUTATED     0  12
  ESRRG WILD-TYPE  47 119
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ESRRG MUTATED      0   12
  ESRRG WILD-TYPE   47  119
        clus
vv       ESRRG MUTATED ESRRG WILD-TYPE
  FEMALE             0              47
  MALE              12             119
D21V4, continuous
[1] "Remove cluster labels:" "ESRRG MUTATED"         
clus
  ESRRG MUTATED ESRRG WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-4604      TCGA-22-4613      TCGA-22-5472      TCGA-22-5474 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4135      TCGA-37-5819      TCGA-60-2698 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2725      TCGA-60-2726 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  ESRRG MUTATED                                       0
  ESRRG WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  ESRRG MUTATED                                        0
  ESRRG WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ESRRG MUTATED                                                            12
  ESRRG WILD-TYPE                                                         160
D21V5, multiclass
                                                             clus
vv                                                            ESRRG MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            12
                                                             clus
vv                                                            ESRRG WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             160
                 vv
clus               T1  T2  T3  T4
  ESRRG MUTATED     2   7   2   1
  ESRRG WILD-TYPE  34 109  12  11
D21V6, multiclass
    clus
vv   ESRRG MUTATED ESRRG WILD-TYPE
  T1             2              34
  T2             7             109
  T3             2              12
  T4             1              11
                 vv
clus               N0  N1  N2  N3
  ESRRG MUTATED     9   2   1   0
  ESRRG WILD-TYPE 108  37  16   5
D21V7, multiclass
    clus
vv   ESRRG MUTATED ESRRG WILD-TYPE
  N0             9             108
  N1             2              37
  N2             1              16
  N3             0               5
                 vv
clus               M0  M1  MX
  ESRRG MUTATED    10   0   1
  ESRRG WILD-TYPE 155   3   5
D21V8, multiclass
    clus
vv   ESRRG MUTATED ESRRG WILD-TYPE
  M0            10             155
  M1             0               3
  MX             1               5
                 vv
clus               I II III+IV
  ESRRG MUTATED    7  3      2
  ESRRG WILD-TYPE 90 35     39
D21V9, multiclass
        clus
vv       ESRRG MUTATED ESRRG WILD-TYPE
  I                  7              90
  II                 3              35
  III+IV             2              39
D21V10, binary
                 cls
clus                0   1
  ESRRG MUTATED     0  12
  ESRRG WILD-TYPE   4 162
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ESRRG MUTATED      0   12
  ESRRG WILD-TYPE    4  162
     clus
vv    ESRRG MUTATED ESRRG WILD-TYPE
  NO              0               4
  YES            12             162
D21V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  ESRRG MUTATED                                             3
  ESRRG WILD-TYPE                                          91
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  ESRRG MUTATED                                        5              3
  ESRRG WILD-TYPE                                     38             25
                 vv
clus              LIFELONG NON-SMOKER
  ESRRG MUTATED                     1
  ESRRG WILD-TYPE                   7
D21V12, multiclass
                                             clus
vv                                            ESRRG MUTATED ESRRG WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  5              38
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     1               7
D21V13, continuous
                 vv
clus               R0  R1  R2  RX
  ESRRG MUTATED    11   0   0   0
  ESRRG WILD-TYPE 136   2   4  10
D21V14, multiclass
    clus
vv   ESRRG MUTATED ESRRG WILD-TYPE
  R0            11             136
  R1             0               2
  R2             0               4
  RX             0              10

Clustering(22) Variable = OR2T33 MUTATION ANALYSIS
D22V1, survival
                  sevent
clus2               0  1
  OR2T33 MUTATED    8  3
  OR2T33 WILD-TYPE 89 67
  OR2T33 MUTATED OR2T33 WILD-TYPE 
              11              156 
  OR2T33 MUTATED OR2T33 WILD-TYPE 
               3               67 
$`OR2T33 MUTATED`
TCGA-18-3409 TCGA-18-5592 TCGA-34-2600 TCGA-37-3783 TCGA-43-2578 TCGA-43-5668 
       79.46         3.02        61.61         3.95        18.08         8.48 
TCGA-46-3768 TCGA-51-4080 TCGA-60-2713 TCGA-66-2742 TCGA-85-6560 
        9.96         0.39        47.87        21.07         0.36 

$`OR2T33 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        6.15         2.79        90.51        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
        2.63        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-3394 TCGA-43-3920 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       17.88        11.57        18.84         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 TCGA-56-1622 
        5.42         0.95         0.59         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 
        0.10         2.04         1.02        10.22        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2715 TCGA-60-2719 
       49.48        55.40        29.19         9.01        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       11.77        16.96        43.10         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
        1.94        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6561 
       30.02        10.06        54.08         4.01        49.05         0.79 

  OR2T33 MUTATED OR2T33 WILD-TYPE 
            0.36             0.10 
  OR2T33 MUTATED OR2T33 WILD-TYPE 
           79.46           173.79 
  OR2T33 MUTATED OR2T33 WILD-TYPE 
            9.96            18.36 
[1] "0.4 - 79.5 (10.0)"  "0.1 - 173.8 (18.4)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
  "OR2T33 MUTATED" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" "OR2T33 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
  "OR2T33 MUTATED" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
  "OR2T33 MUTATED" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR2T33 WILD-TYPE"   "OR2T33 MUTATED" "OR2T33 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
  "OR2T33 MUTATED" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" "OR2T33 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
  "OR2T33 MUTATED" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
  "OR2T33 MUTATED" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR2T33 WILD-TYPE"   "OR2T33 MUTATED" "OR2T33 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
  "OR2T33 MUTATED" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" "OR2T33 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
  "OR2T33 MUTATED" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
  "OR2T33 MUTATED" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR2T33 WILD-TYPE"   "OR2T33 MUTATED" "OR2T33 WILD-TYPE" 
[1] "hr=" "1.4"
D22V2, continuous
D22V3, binary
                  cls
clus                 0   1
  OR2T33 MUTATED     2  12
  OR2T33 WILD-TYPE  45 119
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2T33 MUTATED      2   12
  OR2T33 WILD-TYPE   45  119
        clus
vv       OR2T33 MUTATED OR2T33 WILD-TYPE
  FEMALE              2               45
  MALE               12              119
D22V4, continuous
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR2T33 MUTATED                                       2
  OR2T33 WILD-TYPE                                     3
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR2T33 MUTATED                                        0
  OR2T33 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR2T33 MUTATED                                                            12
  OR2T33 WILD-TYPE                                                         160
D22V5, multiclass
                                                             clus
vv                                                            OR2T33 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             12
                                                             clus
vv                                                            OR2T33 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              160
                  vv
clus                T1  T2  T3  T4
  OR2T33 MUTATED     5   5   3   1
  OR2T33 WILD-TYPE  31 111  11  11
D22V6, multiclass
    clus
vv   OR2T33 MUTATED OR2T33 WILD-TYPE
  T1              5               31
  T2              5              111
  T3              3               11
  T4              1               11
                  vv
clus                N0  N1  N2  N3
  OR2T33 MUTATED     8   5   1   0
  OR2T33 WILD-TYPE 109  34  16   5
D22V7, multiclass
    clus
vv   OR2T33 MUTATED OR2T33 WILD-TYPE
  N0              8              109
  N1              5               34
  N2              1               16
  N3              0                5
                  vv
clus                M0  M1  MX
  OR2T33 MUTATED    12   1   0
  OR2T33 WILD-TYPE 153   2   6
D22V8, multiclass
    clus
vv   OR2T33 MUTATED OR2T33 WILD-TYPE
  M0             12              153
  M1              1                2
  MX              0                6
                  vv
clus                I II III+IV
  OR2T33 MUTATED    5  3      5
  OR2T33 WILD-TYPE 92 35     36
D22V9, multiclass
        clus
vv       OR2T33 MUTATED OR2T33 WILD-TYPE
  I                   5               92
  II                  3               35
  III+IV              5               36
D22V10, binary
                  cls
clus                 0   1
  OR2T33 MUTATED     0  14
  OR2T33 WILD-TYPE   4 160
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2T33 MUTATED      0   14
  OR2T33 WILD-TYPE    4  160
     clus
vv    OR2T33 MUTATED OR2T33 WILD-TYPE
  NO               0                4
  YES             14              160
D22V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR2T33 MUTATED                                             7
  OR2T33 WILD-TYPE                                          87
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR2T33 MUTATED                                        5              1
  OR2T33 WILD-TYPE                                     38             27
                  vv
clus               LIFELONG NON-SMOKER
  OR2T33 MUTATED                     0
  OR2T33 WILD-TYPE                   8
D22V12, multiclass
                                             clus
vv                                            OR2T33 MUTATED OR2T33 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              7               87
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   5               38
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0                8
D22V13, continuous
                  vv
clus                R0  R1  R2  RX
  OR2T33 MUTATED    13   0   0   0
  OR2T33 WILD-TYPE 134   2   4  10
D22V14, multiclass
    clus
vv   OR2T33 MUTATED OR2T33 WILD-TYPE
  R0             13              134
  R1              0                2
  R2              0                4
  RX              0               10

Clustering(23) Variable = OR2G6 MUTATION ANALYSIS
D23V1, survival
                 sevent
clus2              0  1
  OR2G6 MUTATED   11  4
  OR2G6 WILD-TYPE 86 66
  OR2G6 MUTATED OR2G6 WILD-TYPE 
             15             152 
  OR2G6 MUTATED OR2G6 WILD-TYPE 
              4              66 
$`OR2G6 MUTATED`
TCGA-18-3409 TCGA-22-4599 TCGA-33-4583 TCGA-34-2600 TCGA-37-3789 TCGA-37-4135 
       79.46        38.17       141.34        61.61         0.43         6.81 
TCGA-39-5027 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-60-2698 TCGA-66-2759 
       60.76        18.84         8.48         7.00        10.22        25.02 
TCGA-66-2771 TCGA-66-2782 TCGA-85-6560 
       19.00        12.00         0.36 

$`OR2G6 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 
       14.10        27.02        20.45        35.08        24.13        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
       43.10       173.79       103.53        14.07        19.76         2.63 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-4133 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        7.82         0.39         3.39        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       55.17        70.03         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       15.58        35.64         0.79        17.88        18.08        11.57 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
        1.02        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
        0.99        20.98         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
        2.01        23.01         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
        3.98        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6561 
       49.05         0.79 

  OR2G6 MUTATED OR2G6 WILD-TYPE 
           0.36            0.10 
  OR2G6 MUTATED OR2G6 WILD-TYPE 
         141.34          173.79 
  OR2G6 MUTATED OR2G6 WILD-TYPE 
          18.84           17.42 
[1] "0.4 - 141.3 (18.8)" "0.1 - 173.8 (17.4)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "OR2G6 MUTATED" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "OR2G6 MUTATED" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2G6 WILD-TYPE"   "OR2G6 MUTATED"   "OR2G6 MUTATED"   "OR2G6 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "OR2G6 MUTATED" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "OR2G6 MUTATED" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "OR2G6 MUTATED" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2G6 WILD-TYPE"   "OR2G6 MUTATED"   "OR2G6 MUTATED"   "OR2G6 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "OR2G6 MUTATED" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "OR2G6 MUTATED" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "OR2G6 MUTATED" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2G6 WILD-TYPE"   "OR2G6 MUTATED"   "OR2G6 MUTATED"   "OR2G6 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "OR2G6 MUTATED" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
[1] "hr=" "1.9"
D23V2, continuous
D23V3, binary
                 cls
clus                0   1
  OR2G6 MUTATED     2  14
  OR2G6 WILD-TYPE  45 117
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2G6 MUTATED      2   14
  OR2G6 WILD-TYPE   45  117
        clus
vv       OR2G6 MUTATED OR2G6 WILD-TYPE
  FEMALE             2              45
  MALE              14             117
D23V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR2G6 MUTATED                                       2
  OR2G6 WILD-TYPE                                     3
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR2G6 MUTATED                                        0
  OR2G6 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR2G6 MUTATED                                                            14
  OR2G6 WILD-TYPE                                                         158
D23V5, multiclass
                                                             clus
vv                                                            OR2G6 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            14
                                                             clus
vv                                                            OR2G6 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             158
                 vv
clus               T1  T2  T3  T4
  OR2G6 MUTATED     4  10   1   1
  OR2G6 WILD-TYPE  32 106  13  11
D23V6, multiclass
    clus
vv   OR2G6 MUTATED OR2G6 WILD-TYPE
  T1             4              32
  T2            10             106
  T3             1              13
  T4             1              11
                 vv
clus               N0  N1  N2  N3
  OR2G6 MUTATED    11   4   1   0
  OR2G6 WILD-TYPE 106  35  16   5
D23V7, multiclass
    clus
vv   OR2G6 MUTATED OR2G6 WILD-TYPE
  N0            11             106
  N1             4              35
  N2             1              16
  N3             0               5
                 vv
clus               M0  M1  MX
  OR2G6 MUTATED    15   0   0
  OR2G6 WILD-TYPE 150   3   6
D23V8, multiclass
    clus
vv   OR2G6 MUTATED OR2G6 WILD-TYPE
  M0            15             150
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  OR2G6 MUTATED    7  5      3
  OR2G6 WILD-TYPE 90 33     38
D23V9, multiclass
        clus
vv       OR2G6 MUTATED OR2G6 WILD-TYPE
  I                  7              90
  II                 5              33
  III+IV             3              38
D23V10, binary
                 cls
clus                0   1
  OR2G6 MUTATED     0  16
  OR2G6 WILD-TYPE   4 158
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2G6 MUTATED      0   16
  OR2G6 WILD-TYPE    4  158
     clus
vv    OR2G6 MUTATED OR2G6 WILD-TYPE
  NO              0               4
  YES            16             158
D23V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR2G6 MUTATED                                            10
  OR2G6 WILD-TYPE                                          84
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR2G6 MUTATED                                        4              1
  OR2G6 WILD-TYPE                                     39             27
                 vv
clus              LIFELONG NON-SMOKER
  OR2G6 MUTATED                     1
  OR2G6 WILD-TYPE                   7
D23V12, multiclass
                                             clus
vv                                            OR2G6 MUTATED OR2G6 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            10              84
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  4              39
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     1               7
D23V13, continuous
                 vv
clus               R0  R1  R2  RX
  OR2G6 MUTATED    12   1   0   2
  OR2G6 WILD-TYPE 135   1   4   8
D23V14, multiclass
    clus
vv   OR2G6 MUTATED OR2G6 WILD-TYPE
  R0            12             135
  R1             1               1
  R2             0               4
  RX             2               8

Clustering(24) Variable = USP29 MUTATION ANALYSIS
D24V1, survival
                 sevent
clus2              0  1
  USP29 MUTATED   10  6
  USP29 WILD-TYPE 87 64
  USP29 MUTATED USP29 WILD-TYPE 
             16             151 
  USP29 MUTATED USP29 WILD-TYPE 
              6              64 
$`USP29 MUTATED`
TCGA-18-3406 TCGA-22-5489 TCGA-33-4566 TCGA-34-2600 TCGA-39-5027 TCGA-39-5031 
       12.16        62.86       173.79        61.61        60.76        27.35 
TCGA-43-6143 TCGA-51-4079 TCGA-51-4081 TCGA-60-2708 TCGA-60-2721 TCGA-60-2725 
        7.00         0.39         2.07        68.45        26.07        23.64 
TCGA-66-2734 TCGA-66-2756 TCGA-66-2768 TCGA-66-2791 
       43.10         0.99         2.01         5.03 

$`USP29 WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
        4.47        81.07        79.46         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       30.08        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
       43.10       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 
       44.71        68.58        55.17        70.03         1.71        24.33 
TCGA-39-5030 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
        1.94        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       11.57        18.84         8.48         6.02         2.79         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4080 TCGA-56-1622 TCGA-56-5897 
        9.96         0.95         0.59         0.39        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 
        2.04         1.02        10.22        21.70        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2726 TCGA-66-2727 TCGA-66-2742 
       24.10        22.78         1.22        11.77        16.96        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        0.99         2.01         0.92         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2770 TCGA-66-2771 
        0.99         2.01         1.02         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 
TCGA-85-6561 
        0.79 

  USP29 MUTATED USP29 WILD-TYPE 
           0.39            0.10 
  USP29 MUTATED USP29 WILD-TYPE 
         173.79          141.34 
  USP29 MUTATED USP29 WILD-TYPE 
         24.855          16.960 
[1] "0.4 - 173.8 (24.9)" "0.1 - 141.3 (17.0)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
[1] "hr=" "1.6"
D24V2, continuous
D24V3, binary
                 cls
clus                0   1
  USP29 MUTATED     6  11
  USP29 WILD-TYPE  41 120
[1] "tbl2"
                 cls
clus              [,1] [,2]
  USP29 MUTATED      6   11
  USP29 WILD-TYPE   41  120
        clus
vv       USP29 MUTATED USP29 WILD-TYPE
  FEMALE             6              41
  MALE              11             120
D24V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  USP29 MUTATED                                       1
  USP29 WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  USP29 MUTATED                                        0
  USP29 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  USP29 MUTATED                                                            16
  USP29 WILD-TYPE                                                         156
D24V5, multiclass
                                                             clus
vv                                                            USP29 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            16
                                                             clus
vv                                                            USP29 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             156
                 vv
clus               T1  T2  T3  T4
  USP29 MUTATED     5  11   0   1
  USP29 WILD-TYPE  31 105  14  11
D24V6, multiclass
    clus
vv   USP29 MUTATED USP29 WILD-TYPE
  T1             5              31
  T2            11             105
  T3             0              14
  T4             1              11
                 vv
clus               N0  N1  N2  N3
  USP29 MUTATED    13   3   0   1
  USP29 WILD-TYPE 104  36  17   4
D24V7, multiclass
    clus
vv   USP29 MUTATED USP29 WILD-TYPE
  N0            13             104
  N1             3              36
  N2             0              17
  N3             1               4
                 vv
clus               M0  M1  MX
  USP29 MUTATED    16   0   0
  USP29 WILD-TYPE 149   3   6
D24V8, multiclass
    clus
vv   USP29 MUTATED USP29 WILD-TYPE
  M0            16             149
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  USP29 MUTATED   12  3      2
  USP29 WILD-TYPE 85 35     39
D24V9, multiclass
        clus
vv       USP29 MUTATED USP29 WILD-TYPE
  I                 12              85
  II                 3              35
  III+IV             2              39
D24V10, binary
                 cls
clus                0   1
  USP29 MUTATED     0  17
  USP29 WILD-TYPE   4 157
[1] "tbl2"
                 cls
clus              [,1] [,2]
  USP29 MUTATED      0   17
  USP29 WILD-TYPE    4  157
     clus
vv    USP29 MUTATED USP29 WILD-TYPE
  NO              0               4
  YES            17             157
D24V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  USP29 MUTATED                                            12
  USP29 WILD-TYPE                                          82
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  USP29 MUTATED                                        1              3
  USP29 WILD-TYPE                                     42             25
                 vv
clus              LIFELONG NON-SMOKER
  USP29 MUTATED                     1
  USP29 WILD-TYPE                   7
D24V12, multiclass
                                             clus
vv                                            USP29 MUTATED USP29 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            12              82
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              42
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     1               7
D24V13, continuous
                 vv
clus               R0  R1  R2  RX
  USP29 MUTATED    15   1   0   1
  USP29 WILD-TYPE 132   1   4   9
D24V14, multiclass
    clus
vv   USP29 MUTATED USP29 WILD-TYPE
  R0            15             132
  R1             1               1
  R2             0               4
  RX             1               9

Clustering(25) Variable = REG3A MUTATION ANALYSIS
D25V1, survival
                 sevent
clus2              0  1
  REG3A MUTATED    5  6
  REG3A WILD-TYPE 92 64
  REG3A MUTATED REG3A WILD-TYPE 
             11             156 
  REG3A MUTATED REG3A WILD-TYPE 
              6              64 
$`REG3A MUTATED`
TCGA-21-5782 TCGA-21-5786 TCGA-22-5473 TCGA-33-4586 TCGA-34-5239 TCGA-34-5929 
       31.63        21.57        63.52        14.07        10.82         4.96 
TCGA-39-5036 TCGA-51-4079 TCGA-56-1622 TCGA-66-2756 TCGA-66-2787 
       35.64         0.39        28.93         0.99        40.01 

$`REG3A WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5784 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       29.85        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 
       13.12        19.30        11.77        31.69        64.90        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      173.79       103.53       141.34        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5240 
       32.84        50.24        51.78        32.68         9.04         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
       14.07        22.95         5.52         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        6.81         0.39         3.39        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       27.35        15.58         0.79        17.88        18.08        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       18.84         8.48         7.00         6.02         2.79         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4080 TCGA-51-4081 TCGA-56-5897 
        9.96         0.95         0.59         0.39         2.07         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.92         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
        1.94        25.97        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  REG3A MUTATED REG3A WILD-TYPE 
           0.39            0.10 
  REG3A MUTATED REG3A WILD-TYPE 
          63.52          173.79 
  REG3A MUTATED REG3A WILD-TYPE 
          21.57           17.42 
[1] "0.4 - 63.5 (21.6)"  "0.1 - 173.8 (17.4)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "REG3A MUTATED" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "REG3A MUTATED" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "REG3A MUTATED" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
[1] "hr=" "1.4"
D25V2, continuous
D25V3, binary
                 cls
clus                0   1
  REG3A MUTATED     3   8
  REG3A WILD-TYPE  44 123
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG3A MUTATED      3    8
  REG3A WILD-TYPE   44  123
        clus
vv       REG3A MUTATED REG3A WILD-TYPE
  FEMALE             3              44
  MALE               8             123
D25V4, continuous
[1] "Remove cluster labels:" "REG3A MUTATED"         
clus
  REG3A MUTATED REG3A WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5787      TCGA-22-4591      TCGA-22-4593 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-4595      TCGA-22-4599      TCGA-22-4601      TCGA-22-4604 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5472      TCGA-22-5474      TCGA-22-5477 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-5478      TCGA-22-5480      TCGA-22-5482      TCGA-22-5485 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-34-5234 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-5819      TCGA-60-2698 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2725      TCGA-60-2726 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  REG3A MUTATED                                       0
  REG3A WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  REG3A MUTATED                                        0
  REG3A WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  REG3A MUTATED                                                            11
  REG3A WILD-TYPE                                                         161
D25V5, multiclass
                                                             clus
vv                                                            REG3A MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            11
                                                             clus
vv                                                            REG3A WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             161
                 vv
clus               T1  T2  T3  T4
  REG3A MUTATED     1   7   1   2
  REG3A WILD-TYPE  35 109  13  10
D25V6, multiclass
    clus
vv   REG3A MUTATED REG3A WILD-TYPE
  T1             1              35
  T2             7             109
  T3             1              13
  T4             2              10
                 vv
clus               N0  N1  N2  N3
  REG3A MUTATED    10   0   1   0
  REG3A WILD-TYPE 107  39  16   5
D25V7, multiclass
    clus
vv   REG3A MUTATED REG3A WILD-TYPE
  N0            10             107
  N1             0              39
  N2             1              16
  N3             0               5
                 vv
clus               M0  M1  MX
  REG3A MUTATED    10   0   0
  REG3A WILD-TYPE 155   3   6
D25V8, multiclass
    clus
vv   REG3A MUTATED REG3A WILD-TYPE
  M0            10             155
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  REG3A MUTATED    8  0      3
  REG3A WILD-TYPE 89 38     38
D25V9, multiclass
        clus
vv       REG3A MUTATED REG3A WILD-TYPE
  I                  8              89
  II                 0              38
  III+IV             3              38
D25V10, binary
                 cls
clus                0   1
  REG3A MUTATED     0  11
  REG3A WILD-TYPE   4 163
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG3A MUTATED      0   11
  REG3A WILD-TYPE    4  163
     clus
vv    REG3A MUTATED REG3A WILD-TYPE
  NO              0               4
  YES            11             163
D25V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  REG3A MUTATED                                             7
  REG3A WILD-TYPE                                          87
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  REG3A MUTATED                                        2              1
  REG3A WILD-TYPE                                     41             27
                 vv
clus              LIFELONG NON-SMOKER
  REG3A MUTATED                     0
  REG3A WILD-TYPE                   8
D25V12, multiclass
                                             clus
vv                                            REG3A MUTATED REG3A WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             7              87
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D25V13, continuous
                 vv
clus               R0  R1  R2  RX
  REG3A MUTATED     8   0   0   0
  REG3A WILD-TYPE 139   2   4  10
D25V14, multiclass
    clus
vv   REG3A MUTATED REG3A WILD-TYPE
  R0             8             139
  R1             0               2
  R2             0               4
  RX             0              10

Clustering(26) Variable = PNLIPRP3 MUTATION ANALYSIS
D26V1, survival
                    sevent
clus2                 0  1
  PNLIPRP3 MUTATED    5  6
  PNLIPRP3 WILD-TYPE 92 64
  PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE 
                11                156 
  PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE 
                 6                 64 
$`PNLIPRP3 MUTATED`
TCGA-18-3414 TCGA-21-5784 TCGA-21-5787 TCGA-22-4601 TCGA-22-5473 TCGA-33-6737 
       13.02        29.85        10.82        34.75        63.52        19.76 
TCGA-34-5928 TCGA-37-4141 TCGA-60-2722 TCGA-66-2759 TCGA-66-2782 
        5.52         0.39        24.10        25.02        12.00 

$`PNLIPRP3 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5786 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       21.57         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4604 TCGA-22-4607 
       20.45        35.08        24.13        38.17        13.12        19.30 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       11.77        31.69        64.90        14.60        44.22         0.79 
TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       71.34        11.74        30.08        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       82.98       114.05        97.94        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 
      141.34        14.07         2.63        61.61        32.84        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 
       22.95         4.96         3.95         0.43         7.82         6.81 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
        8.48         7.00         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 
        0.95         0.59         0.39         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 
        0.10         2.04         1.02        10.22        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
       30.61         3.16        26.07        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2763 TCGA-66-2765 
        0.92         0.99         0.99        20.98         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 
        2.01        19.00        12.03         3.98        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE 
              0.39               0.10 
  PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE 
             63.52             173.79 
  PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE 
             19.76              17.42 
[1] "0.4 - 63.5 (19.8)"  "0.1 - 173.8 (17.4)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1076 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-21-1077         TCGA-21-1078         TCGA-21-1081 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5784         TCGA-21-5786 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-21-5787         TCGA-22-0944         TCGA-22-1002 
  "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-1011         TCGA-22-1012         TCGA-22-1016 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4595 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-4599         TCGA-22-4601         TCGA-22-4604 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4613         TCGA-22-5471 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5480 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5485         TCGA-22-5489 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-33-4586         TCGA-33-6737         TCGA-34-2596 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2608         TCGA-34-5231 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-4133 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5035         TCGA-39-5036 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-43-2578 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-43-6771         TCGA-46-3768         TCGA-46-6025 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-51-4081         TCGA-56-1622         TCGA-56-5897 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-60-2698 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2715         TCGA-60-2719 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2720         TCGA-60-2721         TCGA-60-2722 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" 
        TCGA-60-2723         TCGA-60-2724         TCGA-60-2725 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2726         TCGA-66-2727         TCGA-66-2734 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2754 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2770         TCGA-66-2771 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2773         TCGA-66-2777         TCGA-66-2778 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2780         TCGA-66-2781         TCGA-66-2782 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" 
        TCGA-66-2783         TCGA-66-2785         TCGA-66-2786 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2787         TCGA-66-2788         TCGA-66-2789 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1076 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-21-1077         TCGA-21-1078         TCGA-21-1081 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5784         TCGA-21-5786 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-21-5787         TCGA-22-0944         TCGA-22-1002 
  "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-1011         TCGA-22-1012         TCGA-22-1016 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4595 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-4599         TCGA-22-4601         TCGA-22-4604 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4613         TCGA-22-5471 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5480 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5485         TCGA-22-5489 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-33-4586         TCGA-33-6737         TCGA-34-2596 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2608         TCGA-34-5231 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-4133 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5035         TCGA-39-5036 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-43-2578 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-43-6771         TCGA-46-3768         TCGA-46-6025 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-51-4081         TCGA-56-1622         TCGA-56-5897 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-60-2698 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2715         TCGA-60-2719 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2720         TCGA-60-2721         TCGA-60-2722 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" 
        TCGA-60-2723         TCGA-60-2724         TCGA-60-2725 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2726         TCGA-66-2727         TCGA-66-2734 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2754 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2770         TCGA-66-2771 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2773         TCGA-66-2777         TCGA-66-2778 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2780         TCGA-66-2781         TCGA-66-2782 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" 
        TCGA-66-2783         TCGA-66-2785         TCGA-66-2786 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2787         TCGA-66-2788         TCGA-66-2789 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1076 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-21-1077         TCGA-21-1078         TCGA-21-1081 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5784         TCGA-21-5786 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-21-5787         TCGA-22-0944         TCGA-22-1002 
  "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-1011         TCGA-22-1012         TCGA-22-1016 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4595 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-4599         TCGA-22-4601         TCGA-22-4604 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4613         TCGA-22-5471 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5480 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5485         TCGA-22-5489 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-33-4586         TCGA-33-6737         TCGA-34-2596 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2608         TCGA-34-5231 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-4133 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5035         TCGA-39-5036 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-43-2578 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-43-6771         TCGA-46-3768         TCGA-46-6025 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-51-4081         TCGA-56-1622         TCGA-56-5897 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-60-2698 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2715         TCGA-60-2719 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2720         TCGA-60-2721         TCGA-60-2722 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" 
        TCGA-60-2723         TCGA-60-2724         TCGA-60-2725 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2726         TCGA-66-2727         TCGA-66-2734 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2754 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2770         TCGA-66-2771 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2773         TCGA-66-2777         TCGA-66-2778 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2780         TCGA-66-2781         TCGA-66-2782 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" 
        TCGA-66-2783         TCGA-66-2785         TCGA-66-2786 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2787         TCGA-66-2788         TCGA-66-2789 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
[1] "hr=" "1.5"
D26V2, continuous
D26V3, binary
                    cls
clus                   0   1
  PNLIPRP3 MUTATED     4   8
  PNLIPRP3 WILD-TYPE  43 123
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  PNLIPRP3 MUTATED      4    8
  PNLIPRP3 WILD-TYPE   43  123
        clus
vv       PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE
  FEMALE                4                 43
  MALE                  8                123
D26V4, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  PNLIPRP3 MUTATED                                       0
  PNLIPRP3 WILD-TYPE                                     5
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  PNLIPRP3 MUTATED                                        0
  PNLIPRP3 WILD-TYPE                                      1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PNLIPRP3 MUTATED                                                            12
  PNLIPRP3 WILD-TYPE                                                         160
D26V5, multiclass
                                                             clus
vv                                                            PNLIPRP3 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               12
                                                             clus
vv                                                            PNLIPRP3 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                       1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                160
                    vv
clus                  T1  T2  T3  T4
  PNLIPRP3 MUTATED     1   6   2   3
  PNLIPRP3 WILD-TYPE  35 110  12   9
D26V6, multiclass
    clus
vv   PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE
  T1                1                 35
  T2                6                110
  T3                2                 12
  T4                3                  9
                    vv
clus                  N0  N1  N2  N3
  PNLIPRP3 MUTATED     6   3   3   0
  PNLIPRP3 WILD-TYPE 111  36  14   5
D26V7, multiclass
    clus
vv   PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE
  N0                6                111
  N1                3                 36
  N2                3                 14
  N3                0                  5
                    vv
clus                  M0  M1  MX
  PNLIPRP3 MUTATED    11   1   0
  PNLIPRP3 WILD-TYPE 154   2   6
D26V8, multiclass
    clus
vv   PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE
  M0               11                154
  M1                1                  2
  MX                0                  6
                    vv
clus                  I II III+IV
  PNLIPRP3 MUTATED    3  4      5
  PNLIPRP3 WILD-TYPE 94 34     36
D26V9, multiclass
        clus
vv       PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE
  I                     3                 94
  II                    4                 34
  III+IV                5                 36
D26V10, binary
                    cls
clus                   0   1
  PNLIPRP3 MUTATED     1  11
  PNLIPRP3 WILD-TYPE   3 163
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  PNLIPRP3 MUTATED      1   11
  PNLIPRP3 WILD-TYPE    3  163
     clus
vv    PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE
  NO                 1                  3
  YES               11                163
D26V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  PNLIPRP3 MUTATED                                             6
  PNLIPRP3 WILD-TYPE                                          88
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  PNLIPRP3 MUTATED                                        3              2
  PNLIPRP3 WILD-TYPE                                     40             26
                    vv
clus                 LIFELONG NON-SMOKER
  PNLIPRP3 MUTATED                     1
  PNLIPRP3 WILD-TYPE                   7
D26V12, multiclass
                                             clus
vv                                            PNLIPRP3 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                6
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     3
  CURRENT SMOKER                                             2
  LIFELONG NON-SMOKER                                        1
                                             clus
vv                                            PNLIPRP3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 88
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      40
  CURRENT SMOKER                                              26
  LIFELONG NON-SMOKER                                          7
D26V13, continuous
                    vv
clus                  R0  R1  R2  RX
  PNLIPRP3 MUTATED     9   1   0   0
  PNLIPRP3 WILD-TYPE 138   1   4  10
D26V14, multiclass
    clus
vv   PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE
  R0                9                138
  R1                1                  1
  R2                0                  4
  RX                0                 10

Clustering(27) Variable = MAGEB2 MUTATION ANALYSIS
D27V1, survival
                  sevent
clus2               0  1
  MAGEB2 MUTATED    5  2
  MAGEB2 WILD-TYPE 92 68
  MAGEB2 MUTATED MAGEB2 WILD-TYPE 
               7              160 
  MAGEB2 MUTATED MAGEB2 WILD-TYPE 
               2               68 
$`MAGEB2 MUTATED`
TCGA-33-4538 TCGA-34-5929 TCGA-56-6545 TCGA-60-2709 TCGA-66-2755 TCGA-66-2757 
       97.94         4.96         2.04        49.48         0.92         0.99 
TCGA-66-2781 
        3.98 

$`MAGEB2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 
       38.17        34.75        13.12        19.30        11.77        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 
       64.90        63.52        14.60        44.22         0.79        71.34 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       11.74        30.08        62.86        56.32        16.60        82.98 
TCGA-33-4533 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
      114.05        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        5.52         3.95         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
        8.48         7.00         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 
        0.95         0.59         0.39         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2710 
        0.10         1.02        10.22        21.70        68.45        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2756 
       16.96        43.10        21.07         0.99         2.01         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
       12.03        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  MAGEB2 MUTATED MAGEB2 WILD-TYPE 
            0.92             0.10 
  MAGEB2 MUTATED MAGEB2 WILD-TYPE 
           97.94           173.79 
  MAGEB2 MUTATED MAGEB2 WILD-TYPE 
            3.98            18.46 
[1] "0.9 - 97.9 (4.0)"   "0.1 - 173.8 (18.5)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" "MAGEB2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
  "MAGEB2 MUTATED" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" "MAGEB2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
  "MAGEB2 MUTATED" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" "MAGEB2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
  "MAGEB2 MUTATED" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
[1] "hr=" "1.2"
D27V2, continuous
D27V3, binary
                  cls
clus                 0   1
  MAGEB2 MUTATED     3   6
  MAGEB2 WILD-TYPE  44 125
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEB2 MUTATED      3    6
  MAGEB2 WILD-TYPE   44  125
        clus
vv       MAGEB2 MUTATED MAGEB2 WILD-TYPE
  FEMALE              3               44
  MALE                6              125
D27V4, continuous
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  MAGEB2 MUTATED                                       0
  MAGEB2 WILD-TYPE                                     5
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  MAGEB2 MUTATED                                        0
  MAGEB2 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  MAGEB2 MUTATED                                                             9
  MAGEB2 WILD-TYPE                                                         163
D27V5, multiclass
                                                             clus
vv                                                            MAGEB2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              9
                                                             clus
vv                                                            MAGEB2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              163
                  vv
clus                T1  T2  T3  T4
  MAGEB2 MUTATED     1   7   0   1
  MAGEB2 WILD-TYPE  35 109  14  11
D27V6, multiclass
    clus
vv   MAGEB2 MUTATED MAGEB2 WILD-TYPE
  T1              1               35
  T2              7              109
  T3              0               14
  T4              1               11
                  vv
clus                N0  N1  N2  N3
  MAGEB2 MUTATED     8   0   1   0
  MAGEB2 WILD-TYPE 109  39  16   5
D27V7, multiclass
    clus
vv   MAGEB2 MUTATED MAGEB2 WILD-TYPE
  N0              8              109
  N1              0               39
  N2              1               16
  N3              0                5
                  vv
clus                M0  M1  MX
  MAGEB2 MUTATED     8   0   1
  MAGEB2 WILD-TYPE 157   3   5
D27V8, multiclass
    clus
vv   MAGEB2 MUTATED MAGEB2 WILD-TYPE
  M0              8              157
  M1              0                3
  MX              1                5
                  vv
clus                I II III+IV
  MAGEB2 MUTATED    7  1      1
  MAGEB2 WILD-TYPE 90 37     40
D27V9, multiclass
        clus
vv       MAGEB2 MUTATED MAGEB2 WILD-TYPE
  I                   7               90
  II                  1               37
  III+IV              1               40
D27V10, binary
                  cls
clus                 0   1
  MAGEB2 MUTATED     0   9
  MAGEB2 WILD-TYPE   4 165
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEB2 MUTATED      0    9
  MAGEB2 WILD-TYPE    4  165
     clus
vv    MAGEB2 MUTATED MAGEB2 WILD-TYPE
  NO               0                4
  YES              9              165
D27V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  MAGEB2 MUTATED                                             5
  MAGEB2 WILD-TYPE                                          89
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  MAGEB2 MUTATED                                        2              2
  MAGEB2 WILD-TYPE                                     41             26
                  vv
clus               LIFELONG NON-SMOKER
  MAGEB2 MUTATED                     0
  MAGEB2 WILD-TYPE                   8
D27V12, multiclass
                                             clus
vv                                            MAGEB2 MUTATED MAGEB2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              5               89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               41
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0                8
D27V13, continuous
                  vv
clus                R0  R1  R2  RX
  MAGEB2 MUTATED     6   1   0   1
  MAGEB2 WILD-TYPE 141   1   4   9
D27V14, multiclass
    clus
vv   MAGEB2 MUTATED MAGEB2 WILD-TYPE
  R0              6              141
  R1              1                1
  R2              0                4
  RX              1                9

Clustering(28) Variable = SPHKAP MUTATION ANALYSIS
D28V1, survival
                  sevent
clus2               0  1
  SPHKAP MUTATED   14 11
  SPHKAP WILD-TYPE 83 59
  SPHKAP MUTATED SPHKAP WILD-TYPE 
              25              142 
  SPHKAP MUTATED SPHKAP WILD-TYPE 
              11               59 
$`SPHKAP MUTATED`
TCGA-18-3409 TCGA-18-3411 TCGA-18-3414 TCGA-18-3416 TCGA-21-1071 TCGA-21-1077 
       79.46        46.52        13.02        28.34        46.88        34.78 
TCGA-21-5782 TCGA-21-5784 TCGA-22-1016 TCGA-22-4613 TCGA-22-5473 TCGA-33-4566 
       31.63        29.85        27.02        11.77        63.52       173.79 
TCGA-33-4583 TCGA-34-5928 TCGA-37-4135 TCGA-37-4141 TCGA-39-5016 TCGA-39-5019 
      141.34         5.52         6.81         0.39        74.07        44.71 
TCGA-51-4080 TCGA-60-2722 TCGA-66-2757 TCGA-66-2766 TCGA-66-2773 TCGA-66-2785 
        0.39        24.10         0.99         1.02         3.02         1.94 
TCGA-66-2791 
        5.03 

$`SPHKAP WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3412 TCGA-18-3415 
       12.16         4.47        81.07         4.80        11.34        59.51 
TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 
       24.92         1.61        43.76         6.15         2.79        90.51 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1076 TCGA-21-1078 TCGA-21-1081 
        3.02        27.16       115.59        60.89        15.55         9.30 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       19.30        31.69        64.90        14.60        44.22         0.79 
TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       71.34        11.74        30.08        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4586 
       82.98       114.05        97.94        43.10       103.53        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-5819 TCGA-39-5021 
        4.96         3.95         0.43         7.82         3.39        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
       27.35        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 
        5.42         9.96         0.95         0.59         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 
       28.93         0.10         2.04         1.02        10.22        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 
       35.34        30.61         3.16        26.07        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
       23.64        11.77        16.96        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        2.01         0.92         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 
        2.01         2.01         2.01        23.01        19.00         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 
       19.00        12.03         3.98        12.00        24.95        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       40.01        22.98         4.04        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  SPHKAP MUTATED SPHKAP WILD-TYPE 
            0.39             0.10 
  SPHKAP MUTATED SPHKAP WILD-TYPE 
          173.79           115.59 
  SPHKAP MUTATED SPHKAP WILD-TYPE 
           27.02            16.78 
[1] "0.4 - 173.8 (27.0)" "0.1 - 115.6 (16.8)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
  "SPHKAP MUTATED"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED"   "SPHKAP MUTATED" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
  "SPHKAP MUTATED"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED"   "SPHKAP MUTATED" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
  "SPHKAP MUTATED"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED"   "SPHKAP MUTATED" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
[1] "hr=" "1.3"
D28V2, continuous
D28V3, binary
                  cls
clus                 0   1
  SPHKAP MUTATED     7  20
  SPHKAP WILD-TYPE  40 111
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SPHKAP MUTATED      7   20
  SPHKAP WILD-TYPE   40  111
        clus
vv       SPHKAP MUTATED SPHKAP WILD-TYPE
  FEMALE              7               40
  MALE               20              111
D28V4, continuous
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  SPHKAP MUTATED                                       3
  SPHKAP WILD-TYPE                                     2
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  SPHKAP MUTATED                                        0
  SPHKAP WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SPHKAP MUTATED                                                            24
  SPHKAP WILD-TYPE                                                         148
D28V5, multiclass
                                                             clus
vv                                                            SPHKAP MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             24
                                                             clus
vv                                                            SPHKAP WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              148
                  vv
clus               T1 T2 T3 T4
  SPHKAP MUTATED    5 19  1  2
  SPHKAP WILD-TYPE 31 97 13 10
D28V6, multiclass
    clus
vv   SPHKAP MUTATED SPHKAP WILD-TYPE
  T1              5               31
  T2             19               97
  T3              1               13
  T4              2               10
                  vv
clus                N0  N1  N2  N3
  SPHKAP MUTATED    17   7   2   1
  SPHKAP WILD-TYPE 100  32  15   4
D28V7, multiclass
    clus
vv   SPHKAP MUTATED SPHKAP WILD-TYPE
  N0             17              100
  N1              7               32
  N2              2               15
  N3              1                4
                  vv
clus                M0  M1  MX
  SPHKAP MUTATED    25   1   0
  SPHKAP WILD-TYPE 140   2   6
D28V8, multiclass
    clus
vv   SPHKAP MUTATED SPHKAP WILD-TYPE
  M0             25              140
  M1              1                2
  MX              0                6
                  vv
clus                I II III+IV
  SPHKAP MUTATED   14  6      6
  SPHKAP WILD-TYPE 83 32     35
D28V9, multiclass
        clus
vv       SPHKAP MUTATED SPHKAP WILD-TYPE
  I                  14               83
  II                  6               32
  III+IV              6               35
D28V10, binary
                  cls
clus                 0   1
  SPHKAP MUTATED     0  27
  SPHKAP WILD-TYPE   4 147
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SPHKAP MUTATED      0   27
  SPHKAP WILD-TYPE    4  147
     clus
vv    SPHKAP MUTATED SPHKAP WILD-TYPE
  NO               0                4
  YES             27              147
D28V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  SPHKAP MUTATED                                            13
  SPHKAP WILD-TYPE                                          81
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  SPHKAP MUTATED                                        9              4
  SPHKAP WILD-TYPE                                     34             24
                  vv
clus               LIFELONG NON-SMOKER
  SPHKAP MUTATED                     1
  SPHKAP WILD-TYPE                   7
D28V12, multiclass
                                             clus
vv                                            SPHKAP MUTATED SPHKAP WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             13               81
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   9               34
  CURRENT SMOKER                                           4               24
  LIFELONG NON-SMOKER                                      1                7
D28V13, continuous
                  vv
clus                R0  R1  R2  RX
  SPHKAP MUTATED    25   1   0   0
  SPHKAP WILD-TYPE 122   1   4  10
D28V14, multiclass
    clus
vv   SPHKAP MUTATED SPHKAP WILD-TYPE
  R0             25              122
  R1              1                1
  R2              0                4
  RX              0               10

Clustering(29) Variable = CFHR4 MUTATION ANALYSIS
D29V1, survival
                 sevent
clus2              0  1
  CFHR4 MUTATED    6  4
  CFHR4 WILD-TYPE 91 66
  CFHR4 MUTATED CFHR4 WILD-TYPE 
             10             157 
  CFHR4 MUTATED CFHR4 WILD-TYPE 
              4              66 
$`CFHR4 MUTATED`
TCGA-22-4613 TCGA-33-4538 TCGA-39-5027 TCGA-46-3768 TCGA-60-2720 TCGA-60-2724 
       11.77        97.94        60.76         9.96         3.16         1.22 
TCGA-66-2734 TCGA-66-2763 TCGA-66-2777 TCGA-66-2782 
       43.10         0.99         2.01        12.00 

$`CFHR4 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 
       38.17        34.75        13.12        19.30        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-6025 TCGA-46-6026 
        7.00         6.02         2.79         5.42         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2721 
       29.19         9.01        47.87        35.34        30.61        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2742 
       24.10        22.78        23.64        11.77        16.96        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
       25.02         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 
       19.00         3.02        19.00        12.03         3.98        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
        1.94        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 
TCGA-85-6561 
        0.79 

  CFHR4 MUTATED CFHR4 WILD-TYPE 
           0.99            0.10 
  CFHR4 MUTATED CFHR4 WILD-TYPE 
          97.94          173.79 
  CFHR4 MUTATED CFHR4 WILD-TYPE 
         10.865          18.840 
[1] "1.0 - 97.9 (10.9)"  "0.1 - 173.8 (18.8)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
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     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "CFHR4 MUTATED" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
  "CFHR4 MUTATED" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "CFHR4 MUTATED" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
[1] "hr=" "1.1"
D29V2, continuous
D29V3, binary
                 cls
clus                0   1
  CFHR4 MUTATED     4   6
  CFHR4 WILD-TYPE  43 125
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CFHR4 MUTATED      4    6
  CFHR4 WILD-TYPE   43  125
        clus
vv       CFHR4 MUTATED CFHR4 WILD-TYPE
  FEMALE             4              43
  MALE               6             125
D29V4, continuous
[1] "Remove cluster labels:" "CFHR4 MUTATED"         
clus
  CFHR4 MUTATED CFHR4 WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-4604      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  CFHR4 MUTATED                                       0
  CFHR4 WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  CFHR4 MUTATED                                        0
  CFHR4 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CFHR4 MUTATED                                                            10
  CFHR4 WILD-TYPE                                                         162
D29V5, multiclass
                                                             clus
vv                                                            CFHR4 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            10
                                                             clus
vv                                                            CFHR4 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             162
                 vv
clus               T1  T2  T3  T4
  CFHR4 MUTATED     1   6   3   0
  CFHR4 WILD-TYPE  35 110  11  12
D29V6, multiclass
    clus
vv   CFHR4 MUTATED CFHR4 WILD-TYPE
  T1             1              35
  T2             6             110
  T3             3              11
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  CFHR4 MUTATED     7   2   1   0
  CFHR4 WILD-TYPE 110  37  16   5
D29V7, multiclass
    clus
vv   CFHR4 MUTATED CFHR4 WILD-TYPE
  N0             7             110
  N1             2              37
  N2             1              16
  N3             0               5
                 vv
clus               M0  M1  MX
  CFHR4 MUTATED    10   0   0
  CFHR4 WILD-TYPE 155   3   6
D29V8, multiclass
    clus
vv   CFHR4 MUTATED CFHR4 WILD-TYPE
  M0            10             155
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  CFHR4 MUTATED    6  1      3
  CFHR4 WILD-TYPE 91 37     38
D29V9, multiclass
        clus
vv       CFHR4 MUTATED CFHR4 WILD-TYPE
  I                  6              91
  II                 1              37
  III+IV             3              38
D29V10, binary
                 cls
clus                0   1
  CFHR4 MUTATED     0  10
  CFHR4 WILD-TYPE   4 164
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CFHR4 MUTATED      0   10
  CFHR4 WILD-TYPE    4  164
     clus
vv    CFHR4 MUTATED CFHR4 WILD-TYPE
  NO              0               4
  YES            10             164
D29V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  CFHR4 MUTATED                                             8
  CFHR4 WILD-TYPE                                          86
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  CFHR4 MUTATED                                        1              1
  CFHR4 WILD-TYPE                                     42             27
                 vv
clus              LIFELONG NON-SMOKER
  CFHR4 MUTATED                     0
  CFHR4 WILD-TYPE                   8
D29V12, multiclass
                                             clus
vv                                            CFHR4 MUTATED CFHR4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             8              86
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              42
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D29V13, continuous
                 vv
clus               R0  R1  R2  RX
  CFHR4 MUTATED     9   0   0   1
  CFHR4 WILD-TYPE 138   2   4   9
D29V14, multiclass
    clus
vv   CFHR4 MUTATED CFHR4 WILD-TYPE
  R0             9             138
  R1             0               2
  R2             0               4
  RX             1               9

Clustering(30) Variable = CPS1 MUTATION ANALYSIS
D30V1, survival
                sevent
clus2             0  1
  CPS1 MUTATED   16  9
  CPS1 WILD-TYPE 81 61
  CPS1 MUTATED CPS1 WILD-TYPE 
            25            142 
  CPS1 MUTATED CPS1 WILD-TYPE 
             9             61 
$`CPS1 MUTATED`
TCGA-18-3409 TCGA-18-3415 TCGA-18-3419 TCGA-18-5592 TCGA-21-1070 TCGA-21-1071 
       79.46        59.51         1.61         3.02       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1081 TCGA-21-5784 TCGA-22-4591 TCGA-22-5482 
       60.89        34.78         9.30        29.85        20.45        11.74 
TCGA-34-5236 TCGA-39-5016 TCGA-46-6026 TCGA-51-4080 TCGA-60-2698 TCGA-60-2720 
        9.04        74.07         0.59         0.39        10.22         3.16 
TCGA-60-2722 TCGA-66-2757 TCGA-66-2759 TCGA-66-2785 TCGA-66-2786 TCGA-66-2789 
       24.10         0.99        25.02         1.94        25.97         4.04 
TCGA-85-6560 
        0.36 

$`CPS1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       13.02        28.34        24.92        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5595 TCGA-21-1078 TCGA-21-5782 TCGA-21-5786 TCGA-21-5787 
       90.51        27.16        15.55        31.63        21.57        10.82 
TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4593 
        7.33         4.31         1.74        14.10        27.02        35.08 
TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 
       24.13        38.17        34.75        13.12        19.30        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       31.69        64.90        63.52        14.60        44.22         0.79 
TCGA-22-5480 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       71.34        30.08        62.86        56.32        16.60        82.98 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
      114.05        97.94        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 
       14.07        19.76         2.63        61.61        32.84        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       51.78        32.68        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 
        5.52         4.96         3.95         0.43         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        0.39         3.39        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
        8.48         7.00         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-51-4079 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.95         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
        1.02        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2721 TCGA-60-2723 
        9.01        47.87        35.34        30.61        26.07        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2763 
        0.99         2.01         0.92         0.99        20.98         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2787 TCGA-66-2788 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       24.95        40.01        22.98         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6561 
       54.08         4.01        49.05         0.79 

  CPS1 MUTATED CPS1 WILD-TYPE 
          0.36           0.10 
  CPS1 MUTATED CPS1 WILD-TYPE 
        115.59         173.79 
  CPS1 MUTATED CPS1 WILD-TYPE 
         11.74          17.98 
[1] "0.4 - 115.6 (11.7)" "0.1 - 173.8 (18.0)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "CPS1 MUTATED" "CPS1 WILD-TYPE"   "CPS1 MUTATED"   "CPS1 MUTATED" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
  "CPS1 MUTATED"   "CPS1 MUTATED" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED"   "CPS1 MUTATED" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "CPS1 MUTATED" "CPS1 WILD-TYPE"   "CPS1 MUTATED"   "CPS1 MUTATED" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
  "CPS1 MUTATED"   "CPS1 MUTATED" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED"   "CPS1 MUTATED" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "CPS1 MUTATED" "CPS1 WILD-TYPE"   "CPS1 MUTATED"   "CPS1 MUTATED" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
  "CPS1 MUTATED"   "CPS1 MUTATED" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED"   "CPS1 MUTATED" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" 
[1] "hr=" "1.2"
D30V2, continuous
D30V3, binary
                cls
clus               0   1
  CPS1 MUTATED     6  19
  CPS1 WILD-TYPE  41 112
[1] "tbl2"
                cls
clus             [,1] [,2]
  CPS1 MUTATED      6   19
  CPS1 WILD-TYPE   41  112
        clus
vv       CPS1 MUTATED CPS1 WILD-TYPE
  FEMALE            6             41
  MALE             19            112
D30V4, continuous
                vv
clus             LUNG BASALOID SQUAMOUS CELL CARCINOMA
  CPS1 MUTATED                                       3
  CPS1 WILD-TYPE                                     2
                vv
clus             LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  CPS1 MUTATED                                        0
  CPS1 WILD-TYPE                                      1
                vv
clus             LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CPS1 MUTATED                                                            22
  CPS1 WILD-TYPE                                                         150
D30V5, multiclass
                                                             clus
vv                                                            CPS1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)           22
                                                             clus
vv                                                            CPS1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            150
                vv
clus              T1  T2  T3  T4
  CPS1 MUTATED     4  16   4   1
  CPS1 WILD-TYPE  32 100  10  11
D30V6, multiclass
    clus
vv   CPS1 MUTATED CPS1 WILD-TYPE
  T1            4             32
  T2           16            100
  T3            4             10
  T4            1             11
                vv
clus              N0  N1  N2  N3
  CPS1 MUTATED    13   9   2   1
  CPS1 WILD-TYPE 104  30  15   4
D30V7, multiclass
    clus
vv   CPS1 MUTATED CPS1 WILD-TYPE
  N0           13            104
  N1            9             30
  N2            2             15
  N3            1              4
                vv
clus              M0  M1  MX
  CPS1 MUTATED    24   0   0
  CPS1 WILD-TYPE 141   3   6
D30V8, multiclass
    clus
vv   CPS1 MUTATED CPS1 WILD-TYPE
  M0           24            141
  M1            0              3
  MX            0              6
                vv
clus              I II III+IV
  CPS1 MUTATED    9  9      6
  CPS1 WILD-TYPE 88 29     35
D30V9, multiclass
        clus
vv       CPS1 MUTATED CPS1 WILD-TYPE
  I                 9             88
  II                9             29
  III+IV            6             35
D30V10, binary
                cls
clus               0   1
  CPS1 MUTATED     1  24
  CPS1 WILD-TYPE   3 150
[1] "tbl2"
                cls
clus             [,1] [,2]
  CPS1 MUTATED      1   24
  CPS1 WILD-TYPE    3  150
     clus
vv    CPS1 MUTATED CPS1 WILD-TYPE
  NO             1              3
  YES           24            150
D30V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  CPS1 MUTATED                                            16
  CPS1 WILD-TYPE                                          78
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  CPS1 MUTATED                                        5              3
  CPS1 WILD-TYPE                                     38             25
                vv
clus             LIFELONG NON-SMOKER
  CPS1 MUTATED                     0
  CPS1 WILD-TYPE                   8
D30V12, multiclass
                                             clus
vv                                            CPS1 MUTATED CPS1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           16             78
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 5             38
  CURRENT SMOKER                                         3             25
  LIFELONG NON-SMOKER                                    0              8
D30V13, continuous
                vv
clus              R0  R1  R2  RX
  CPS1 MUTATED    22   0   1   1
  CPS1 WILD-TYPE 125   2   3   9
D30V14, multiclass
    clus
vv   CPS1 MUTATED CPS1 WILD-TYPE
  R0           22            125
  R1            0              2
  R2            1              3
  RX            1              9

Clustering(31) Variable = ELTD1 MUTATION ANALYSIS
D31V1, survival
                 sevent
clus2              0  1
  ELTD1 MUTATED    9  8
  ELTD1 WILD-TYPE 88 62
  ELTD1 MUTATED ELTD1 WILD-TYPE 
             17             150 
  ELTD1 MUTATED ELTD1 WILD-TYPE 
              8              62 
$`ELTD1 MUTATED`
TCGA-18-3409 TCGA-18-3419 TCGA-22-1002 TCGA-22-1012 TCGA-22-1016 TCGA-22-5473 
       79.46         1.61         4.31        14.10        27.02        63.52 
TCGA-33-4566 TCGA-34-5239 TCGA-37-3783 TCGA-37-4133 TCGA-43-5668 TCGA-56-6546 
      173.79        10.82         3.95         7.82         8.48         1.02 
TCGA-60-2698 TCGA-60-2722 TCGA-60-2726 TCGA-66-2782 TCGA-85-6561 
       10.22        24.10        11.77        12.00         0.79 

$`ELTD1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        28.34        24.92        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1011 TCGA-22-4591 TCGA-22-4593 
       21.57        10.82         7.33         1.74        20.45        35.08 
TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 
       24.13        38.17        34.75        13.12        19.30        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 
       31.69        64.90        14.60        44.22         0.79        71.34 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       11.74        30.08        62.86        56.32        16.60        82.98 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
      114.05        97.94        43.10       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
       32.68         9.04         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3789 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        4.96         0.43         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-6143 TCGA-43-6647 
       17.88        18.08        11.57        18.84         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-60-2707 
        0.39         2.07        28.93         0.10         2.04        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 
       35.34        30.61         3.16        26.07        22.78         1.22 
TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       23.64        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 
        3.02         2.01        19.00        12.03         3.98        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
        1.94        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 

  ELTD1 MUTATED ELTD1 WILD-TYPE 
           0.79            0.10 
  ELTD1 MUTATED ELTD1 WILD-TYPE 
         173.79          141.34 
  ELTD1 MUTATED ELTD1 WILD-TYPE 
          10.82           19.00 
[1] "0.8 - 173.8 (10.8)" "0.1 - 141.3 (19.0)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
  "ELTD1 MUTATED"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
  "ELTD1 MUTATED"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
  "ELTD1 MUTATED"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
[1] "hr=" "1.1"
D31V2, continuous
D31V3, binary
                 cls
clus                0   1
  ELTD1 MUTATED     1  17
  ELTD1 WILD-TYPE  46 114
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ELTD1 MUTATED      1   17
  ELTD1 WILD-TYPE   46  114
        clus
vv       ELTD1 MUTATED ELTD1 WILD-TYPE
  FEMALE             1              46
  MALE              17             114
D31V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  ELTD1 MUTATED                                       1
  ELTD1 WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  ELTD1 MUTATED                                        0
  ELTD1 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ELTD1 MUTATED                                                            17
  ELTD1 WILD-TYPE                                                         155
D31V5, multiclass
                                                             clus
vv                                                            ELTD1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            17
                                                             clus
vv                                                            ELTD1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             155
                 vv
clus               T1  T2  T3  T4
  ELTD1 MUTATED     3   9   4   2
  ELTD1 WILD-TYPE  33 107  10  10
D31V6, multiclass
    clus
vv   ELTD1 MUTATED ELTD1 WILD-TYPE
  T1             3              33
  T2             9             107
  T3             4              10
  T4             2              10
                 vv
clus               N0  N1  N2  N3
  ELTD1 MUTATED    11   6   1   0
  ELTD1 WILD-TYPE 106  33  16   5
D31V7, multiclass
    clus
vv   ELTD1 MUTATED ELTD1 WILD-TYPE
  N0            11             106
  N1             6              33
  N2             1              16
  N3             0               5
                 vv
clus               M0  M1  MX
  ELTD1 MUTATED    17   0   1
  ELTD1 WILD-TYPE 148   3   5
D31V8, multiclass
    clus
vv   ELTD1 MUTATED ELTD1 WILD-TYPE
  M0            17             148
  M1             0               3
  MX             1               5
                 vv
clus               I II III+IV
  ELTD1 MUTATED    5  7      4
  ELTD1 WILD-TYPE 92 31     37
D31V9, multiclass
        clus
vv       ELTD1 MUTATED ELTD1 WILD-TYPE
  I                  5              92
  II                 7              31
  III+IV             4              37
D31V10, binary
                 cls
clus                0   1
  ELTD1 MUTATED     0  18
  ELTD1 WILD-TYPE   4 156
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ELTD1 MUTATED      0   18
  ELTD1 WILD-TYPE    4  156
     clus
vv    ELTD1 MUTATED ELTD1 WILD-TYPE
  NO              0               4
  YES            18             156
D31V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  ELTD1 MUTATED                                             9
  ELTD1 WILD-TYPE                                          85
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  ELTD1 MUTATED                                        5              1
  ELTD1 WILD-TYPE                                     38             27
                 vv
clus              LIFELONG NON-SMOKER
  ELTD1 MUTATED                     1
  ELTD1 WILD-TYPE                   7
D31V12, multiclass
                                             clus
vv                                            ELTD1 MUTATED ELTD1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             9              85
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  5              38
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     1               7
D31V13, continuous
                 vv
clus               R0  R1  R2  RX
  ELTD1 MUTATED    13   0   0   2
  ELTD1 WILD-TYPE 134   2   4   8
D31V14, multiclass
    clus
vv   ELTD1 MUTATED ELTD1 WILD-TYPE
  R0            13             134
  R1             0               2
  R2             0               4
  RX             2               8

Clustering(32) Variable = OR4M2 MUTATION ANALYSIS
D32V1, survival
                 sevent
clus2              0  1
  OR4M2 MUTATED    7  4
  OR4M2 WILD-TYPE 90 66
  OR4M2 MUTATED OR4M2 WILD-TYPE 
             11             156 
  OR4M2 MUTATED OR4M2 WILD-TYPE 
              4              66 
$`OR4M2 MUTATED`
TCGA-22-0944 TCGA-22-4591 TCGA-33-4533 TCGA-39-5037 TCGA-43-5668 TCGA-46-6026 
        7.33        20.45       114.05         0.79         8.48         0.59 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2770 TCGA-66-2773 TCGA-66-2791 
        0.99        20.98        23.01         3.02         5.03 

$`OR4M2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-1002 TCGA-22-1011 
       31.63        29.85        21.57        10.82         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       14.10        27.02        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 
       62.86        56.32        16.60        82.98        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-6143 TCGA-43-6647 
       17.88        18.08        11.57        18.84         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 
        2.79         5.42         9.96         0.95         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2759 
       21.07         0.99         2.01         0.92         0.99        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2771 
        0.99         2.01         1.02         2.01         2.01        19.00 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2792 
        1.94        25.97        40.01        22.98         4.04        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  OR4M2 MUTATED OR4M2 WILD-TYPE 
           0.59            0.10 
  OR4M2 MUTATED OR4M2 WILD-TYPE 
         114.05          173.79 
  OR4M2 MUTATED OR4M2 WILD-TYPE 
           7.33           18.46 
[1] "0.6 - 114.0 (7.3)"  "0.1 - 173.8 (18.5)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
  "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
  "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
  "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
[1] "hr=" "1.2"
D32V2, continuous
D32V3, binary
                 cls
clus                0   1
  OR4M2 MUTATED     2  12
  OR4M2 WILD-TYPE  45 119
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4M2 MUTATED      2   12
  OR4M2 WILD-TYPE   45  119
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  FEMALE             2              45
  MALE              12             119
D32V4, continuous
[1] "Remove cluster labels:" "OR4M2 MUTATED"         
clus
  OR4M2 MUTATED OR4M2 WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4593 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-4595      TCGA-22-4599      TCGA-22-4601      TCGA-22-4604 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR4M2 MUTATED                                       0
  OR4M2 WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR4M2 MUTATED                                        1
  OR4M2 WILD-TYPE                                      0
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR4M2 MUTATED                                                            13
  OR4M2 WILD-TYPE                                                         159
D32V5, multiclass
                                                             clus
vv                                                            OR4M2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            13
                                                             clus
vv                                                            OR4M2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             159
                 vv
clus               T1  T2  T3  T4
  OR4M2 MUTATED     4   8   2   0
  OR4M2 WILD-TYPE  32 108  12  12
D32V6, multiclass
    clus
vv   OR4M2 MUTATED OR4M2 WILD-TYPE
  T1             4              32
  T2             8             108
  T3             2              12
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  OR4M2 MUTATED     9   3   1   1
  OR4M2 WILD-TYPE 108  36  16   4
D32V7, multiclass
    clus
vv   OR4M2 MUTATED OR4M2 WILD-TYPE
  N0             9             108
  N1             3              36
  N2             1              16
  N3             1               4
                 vv
clus               M0  M1  MX
  OR4M2 MUTATED    14   0   0
  OR4M2 WILD-TYPE 151   3   6
D32V8, multiclass
    clus
vv   OR4M2 MUTATED OR4M2 WILD-TYPE
  M0            14             151
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  OR4M2 MUTATED    7  5      2
  OR4M2 WILD-TYPE 90 33     39
D32V9, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  I                  7              90
  II                 5              33
  III+IV             2              39
D32V10, binary
                 cls
clus                0   1
  OR4M2 MUTATED     1  13
  OR4M2 WILD-TYPE   3 161
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4M2 MUTATED      1   13
  OR4M2 WILD-TYPE    3  161
     clus
vv    OR4M2 MUTATED OR4M2 WILD-TYPE
  NO              1               3
  YES            13             161
D32V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR4M2 MUTATED                                             5
  OR4M2 WILD-TYPE                                          89
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR4M2 MUTATED                                        5              3
  OR4M2 WILD-TYPE                                     38             25
                 vv
clus              LIFELONG NON-SMOKER
  OR4M2 MUTATED                     1
  OR4M2 WILD-TYPE                   7
D32V12, multiclass
                                             clus
vv                                            OR4M2 MUTATED OR4M2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  5              38
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     1               7
D32V13, continuous
                 vv
clus               R0  R1  R2  RX
  OR4M2 MUTATED    10   1   1   1
  OR4M2 WILD-TYPE 137   1   3   9
D32V14, multiclass
    clus
vv   OR4M2 MUTATED OR4M2 WILD-TYPE
  R0            10             137
  R1             1               1
  R2             1               3
  RX             1               9

Clustering(33) Variable = OR51B2 MUTATION ANALYSIS
D33V1, survival
                  sevent
clus2               0  1
  OR51B2 MUTATED    6  4
  OR51B2 WILD-TYPE 91 66
  OR51B2 MUTATED OR51B2 WILD-TYPE 
              10              157 
  OR51B2 MUTATED OR51B2 WILD-TYPE 
               4               66 
$`OR51B2 MUTATED`
TCGA-18-3406 TCGA-18-3409 TCGA-21-1077 TCGA-22-1016 TCGA-22-5482 TCGA-33-4532 
       12.16        79.46        34.78        27.02        11.74        82.98 
TCGA-60-2713 TCGA-66-2757 TCGA-66-2766 TCGA-66-2785 
       47.87         0.99         1.02         1.94 

$`OR51B2 WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
        4.47        81.07         4.80        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 
       60.89        15.55         9.30        31.63        29.85        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-4591 
       10.82         7.33         4.31         1.74        14.10        20.45 
TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 
       35.08        24.13        38.17        34.75        13.12        19.30 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
        0.79        71.34        30.08        62.86        56.32        16.60 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
      114.05        97.94        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 
       14.07        19.76         2.63        61.61        32.84        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
       22.95         5.52         4.96         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        6.81         0.39         3.39        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
       27.35        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2759 
        0.99         2.01         0.92         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        0.99         2.01         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
       24.95        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 
TCGA-85-6561 
        0.79 

  OR51B2 MUTATED OR51B2 WILD-TYPE 
            0.99             0.10 
  OR51B2 MUTATED OR51B2 WILD-TYPE 
           82.98           173.79 
  OR51B2 MUTATED OR51B2 WILD-TYPE 
           19.59            17.88 
[1] "1.0 - 83.0 (19.6)"  "0.1 - 173.8 (17.9)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
  "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE"   "OR51B2 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
  "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
  "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
  "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE"   "OR51B2 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
  "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
  "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
  "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE"   "OR51B2 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
  "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
  "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
[1] "hr=" "1.2"
D33V2, continuous
D33V3, binary
                  cls
clus                 0   1
  OR51B2 MUTATED     1   9
  OR51B2 WILD-TYPE  46 122
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR51B2 MUTATED      1    9
  OR51B2 WILD-TYPE   46  122
        clus
vv       OR51B2 MUTATED OR51B2 WILD-TYPE
  FEMALE              1               46
  MALE                9              122
D33V4, continuous
[1] "Remove cluster labels:" "OR51B2 MUTATED"        
clus
  OR51B2 MUTATED OR51B2 WILD-TYPE 
               2               34 
      TCGA-18-3407       TCGA-18-3410       TCGA-18-3414       TCGA-18-3419 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5787       TCGA-22-4591       TCGA-22-4593 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-4595       TCGA-22-4599       TCGA-22-4601       TCGA-22-4604 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5472       TCGA-22-5473       TCGA-22-5474 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5485 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-5489       TCGA-22-5491       TCGA-22-5492       TCGA-34-5234 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-37-4133       TCGA-37-4135       TCGA-37-5819       TCGA-60-2698 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2715       TCGA-60-2725       TCGA-60-2726 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-70-6722       TCGA-70-6723 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR51B2 MUTATED                                       1
  OR51B2 WILD-TYPE                                     4
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR51B2 MUTATED                                        0
  OR51B2 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR51B2 MUTATED                                                             9
  OR51B2 WILD-TYPE                                                         163
D33V5, multiclass
                                                             clus
vv                                                            OR51B2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              9
                                                             clus
vv                                                            OR51B2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              163
                  vv
clus                T1  T2  T3  T4
  OR51B2 MUTATED     3   7   0   0
  OR51B2 WILD-TYPE  33 109  14  12
D33V6, multiclass
    clus
vv   OR51B2 MUTATED OR51B2 WILD-TYPE
  T1              3               33
  T2              7              109
  T3              0               14
  T4              0               12
                  vv
clus                N0  N1  N2  N3
  OR51B2 MUTATED     8   1   1   0
  OR51B2 WILD-TYPE 109  38  16   5
D33V7, multiclass
    clus
vv   OR51B2 MUTATED OR51B2 WILD-TYPE
  N0              8              109
  N1              1               38
  N2              1               16
  N3              0                5
                  vv
clus                M0  M1  MX
  OR51B2 MUTATED    10   0   0
  OR51B2 WILD-TYPE 155   3   6
D33V8, multiclass
    clus
vv   OR51B2 MUTATED OR51B2 WILD-TYPE
  M0             10              155
  M1              0                3
  MX              0                6
                  vv
clus                I II III+IV
  OR51B2 MUTATED    7  1      1
  OR51B2 WILD-TYPE 90 37     40
D33V9, multiclass
        clus
vv       OR51B2 MUTATED OR51B2 WILD-TYPE
  I                   7               90
  II                  1               37
  III+IV              1               40
D33V10, binary
                  cls
clus                 0   1
  OR51B2 MUTATED     0  10
  OR51B2 WILD-TYPE   4 164
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR51B2 MUTATED      0   10
  OR51B2 WILD-TYPE    4  164
     clus
vv    OR51B2 MUTATED OR51B2 WILD-TYPE
  NO               0                4
  YES             10              164
D33V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR51B2 MUTATED                                             6
  OR51B2 WILD-TYPE                                          88
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR51B2 MUTATED                                        2              2
  OR51B2 WILD-TYPE                                     41             26
                  vv
clus               LIFELONG NON-SMOKER
  OR51B2 MUTATED                     0
  OR51B2 WILD-TYPE                   8
D33V12, multiclass
                                             clus
vv                                            OR51B2 MUTATED OR51B2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              6               88
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               41
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0                8
D33V13, continuous
                  vv
clus                R0  R1  R2  RX
  OR51B2 MUTATED    10   0   0   0
  OR51B2 WILD-TYPE 137   2   4  10
D33V14, multiclass
    clus
vv   OR51B2 MUTATED OR51B2 WILD-TYPE
  R0             10              137
  R1              0                2
  R2              0                4
  RX              0               10

Clustering(34) Variable = SLC13A1 MUTATION ANALYSIS
D34V1, survival
                   sevent
clus2                0  1
  SLC13A1 MUTATED    8  4
  SLC13A1 WILD-TYPE 89 66
  SLC13A1 MUTATED SLC13A1 WILD-TYPE 
               12               155 
  SLC13A1 MUTATED SLC13A1 WILD-TYPE 
                4                66 
$`SLC13A1 MUTATED`
TCGA-18-3415 TCGA-18-4083 TCGA-22-5471 TCGA-39-5027 TCGA-39-5039 TCGA-43-6647 
       59.51         6.15        31.69        60.76        17.88         6.02 
TCGA-60-2698 TCGA-60-2719 TCGA-60-2726 TCGA-66-2742 TCGA-66-2767 TCGA-66-2787 
       10.22        30.61        11.77        21.07         2.01        40.01 

$`SLC13A1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        13.02        28.34        24.92         1.61        43.76 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       13.12        19.30        11.77        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 
       74.07        44.71        68.58        55.17        70.03         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6770 
       18.08        11.57        18.84         8.48         7.00         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 
        2.07        28.93         0.10         2.04         1.02        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       35.34         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       23.64        16.96        43.10         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        1.02         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       25.97        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  SLC13A1 MUTATED SLC13A1 WILD-TYPE 
             2.01              0.10 
  SLC13A1 MUTATED SLC13A1 WILD-TYPE 
            60.76            173.79 
  SLC13A1 MUTATED SLC13A1 WILD-TYPE 
           19.475            16.960 
[1] "2.0 - 60.8 (19.5)"  "0.1 - 173.8 (17.0)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
  "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
  "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
  "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
  "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
  "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
  "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
  "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
  "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
  "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
[1] "hr=" "1.2"
D34V2, continuous
D34V3, binary
                   cls
clus                  0   1
  SLC13A1 MUTATED     2  10
  SLC13A1 WILD-TYPE  45 121
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC13A1 MUTATED      2   10
  SLC13A1 WILD-TYPE   45  121
        clus
vv       SLC13A1 MUTATED SLC13A1 WILD-TYPE
  FEMALE               2                45
  MALE                10               121
D34V4, continuous
[1] "Remove cluster labels:" "SLC13A1 MUTATED"       
clus
  SLC13A1 MUTATED SLC13A1 WILD-TYPE 
                2                34 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3410        TCGA-18-3414 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-3419        TCGA-21-5782        TCGA-21-5787        TCGA-22-4591 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-4593        TCGA-22-4595        TCGA-22-4599        TCGA-22-4601 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4613        TCGA-22-5472        TCGA-22-5473 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-5492        TCGA-34-5234        TCGA-37-4133        TCGA-37-4135 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-37-5819        TCGA-60-2712        TCGA-60-2715        TCGA-60-2725 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-70-6722        TCGA-70-6723 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  SLC13A1 MUTATED                                       0
  SLC13A1 WILD-TYPE                                     5
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  SLC13A1 MUTATED                                        0
  SLC13A1 WILD-TYPE                                      1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SLC13A1 MUTATED                                                            12
  SLC13A1 WILD-TYPE                                                         160
D34V5, multiclass
                                                             clus
vv                                                            SLC13A1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              12
                                                             clus
vv                                                            SLC13A1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               160
                   vv
clus                 T1  T2  T3  T4
  SLC13A1 MUTATED     2  10   0   0
  SLC13A1 WILD-TYPE  34 106  14  12
D34V6, multiclass
    clus
vv   SLC13A1 MUTATED SLC13A1 WILD-TYPE
  T1               2                34
  T2              10               106
  T3               0                14
  T4               0                12
                   vv
clus                 N0  N1  N2  N3
  SLC13A1 MUTATED     6   5   0   1
  SLC13A1 WILD-TYPE 111  34  17   4
D34V7, multiclass
    clus
vv   SLC13A1 MUTATED SLC13A1 WILD-TYPE
  N0               6               111
  N1               5                34
  N2               0                17
  N3               1                 4
                   vv
clus                 M0  M1  MX
  SLC13A1 MUTATED    10   1   1
  SLC13A1 WILD-TYPE 155   2   5
D34V8, multiclass
    clus
vv   SLC13A1 MUTATED SLC13A1 WILD-TYPE
  M0              10               155
  M1               1                 2
  MX               1                 5
                   vv
clus                 I II III+IV
  SLC13A1 MUTATED    5  5      2
  SLC13A1 WILD-TYPE 92 33     39
D34V9, multiclass
        clus
vv       SLC13A1 MUTATED SLC13A1 WILD-TYPE
  I                    5                92
  II                   5                33
  III+IV               2                39
D34V10, binary
                   cls
clus                  0   1
  SLC13A1 MUTATED     1  11
  SLC13A1 WILD-TYPE   3 163
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC13A1 MUTATED      1   11
  SLC13A1 WILD-TYPE    3  163
     clus
vv    SLC13A1 MUTATED SLC13A1 WILD-TYPE
  NO                1                 3
  YES              11               163
D34V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  SLC13A1 MUTATED                                             7
  SLC13A1 WILD-TYPE                                          87
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  SLC13A1 MUTATED                                        4              1
  SLC13A1 WILD-TYPE                                     39             27
                   vv
clus                LIFELONG NON-SMOKER
  SLC13A1 MUTATED                     0
  SLC13A1 WILD-TYPE                   8
D34V12, multiclass
                                             clus
vv                                            SLC13A1 MUTATED SLC13A1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               7                87
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    4                39
  CURRENT SMOKER                                            1                27
  LIFELONG NON-SMOKER                                       0                 8
D34V13, continuous
                   vv
clus                 R0  R1  R2  RX
  SLC13A1 MUTATED     9   0   1   2
  SLC13A1 WILD-TYPE 138   2   3   8
D34V14, multiclass
    clus
vv   SLC13A1 MUTATED SLC13A1 WILD-TYPE
  R0               9               138
  R1               0                 2
  R2               1                 3
  RX               2                 8

Clustering(35) Variable = TGIF2LX MUTATION ANALYSIS
D35V1, survival
                   sevent
clus2                0  1
  TGIF2LX MUTATED    5  4
  TGIF2LX WILD-TYPE 92 66
  TGIF2LX MUTATED TGIF2LX WILD-TYPE 
                9               158 
  TGIF2LX MUTATED TGIF2LX WILD-TYPE 
                4                66 
$`TGIF2LX MUTATED`
TCGA-21-5786 TCGA-22-1016 TCGA-22-4601 TCGA-22-4613 TCGA-22-5471 TCGA-22-5480 
       21.57        27.02        34.75        11.77        31.69        71.34 
TCGA-34-5231 TCGA-37-3789 TCGA-60-2720 
       50.24         0.43         3.16 

$`TGIF2LX WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       31.63        29.85        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4604 
       14.10        20.45        35.08        24.13        38.17        13.12 
TCGA-22-4607 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       19.30        64.90        63.52        14.60        44.22         0.79 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       11.74        30.08        62.86        56.32        16.60        82.98 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
      114.05        97.94        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5232 
       14.07        19.76         2.63        61.61        32.84        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        5.52         4.96         3.95         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
        8.48         7.00         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 
        0.95         0.59         0.39         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 
        0.10         2.04         1.02        10.22        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
       30.61        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  TGIF2LX MUTATED TGIF2LX WILD-TYPE 
             0.43              0.10 
  TGIF2LX MUTATED TGIF2LX WILD-TYPE 
            71.34            173.79 
  TGIF2LX MUTATED TGIF2LX WILD-TYPE 
            27.02             16.78 
[1] "0.4 - 71.3 (27.0)"  "0.1 - 173.8 (16.8)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE"   "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
  "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"TGIF2LX WILD-TYPE"   "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "TGIF2LX MUTATED"   "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE"   "TGIF2LX MUTATED" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"TGIF2LX WILD-TYPE"   "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
  "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE"   "TGIF2LX MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE"   "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
  "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"TGIF2LX WILD-TYPE"   "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "TGIF2LX MUTATED"   "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE"   "TGIF2LX MUTATED" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"TGIF2LX WILD-TYPE"   "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
  "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE"   "TGIF2LX MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE"   "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
  "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"TGIF2LX WILD-TYPE"   "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "TGIF2LX MUTATED"   "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE"   "TGIF2LX MUTATED" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"TGIF2LX WILD-TYPE"   "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
  "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE"   "TGIF2LX MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
[1] "hr=" "1.1"
D35V2, continuous
D35V3, binary
                   cls
clus                  0   1
  TGIF2LX MUTATED     4   5
  TGIF2LX WILD-TYPE  43 126
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TGIF2LX MUTATED      4    5
  TGIF2LX WILD-TYPE   43  126
        clus
vv       TGIF2LX MUTATED TGIF2LX WILD-TYPE
  FEMALE               4                43
  MALE                 5               126
D35V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  TGIF2LX MUTATED                                       0
  TGIF2LX WILD-TYPE                                     5
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  TGIF2LX MUTATED                                        0
  TGIF2LX WILD-TYPE                                      1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TGIF2LX MUTATED                                                             9
  TGIF2LX WILD-TYPE                                                         163
D35V5, multiclass
                                                             clus
vv                                                            TGIF2LX MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               9
                                                             clus
vv                                                            TGIF2LX WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               163
                   vv
clus                 T1  T2  T3  T4
  TGIF2LX MUTATED     3   5   0   1
  TGIF2LX WILD-TYPE  33 111  14  11
D35V6, multiclass
    clus
vv   TGIF2LX MUTATED TGIF2LX WILD-TYPE
  T1               3                33
  T2               5               111
  T3               0                14
  T4               1                11
                   vv
clus                 N0  N1  N2  N3
  TGIF2LX MUTATED     9   0   0   0
  TGIF2LX WILD-TYPE 108  39  17   5
D35V7, multiclass
    clus
vv   TGIF2LX MUTATED TGIF2LX WILD-TYPE
  N0               9               108
  N1               0                39
  N2               0                17
  N3               0                 5
                   vv
clus                 M0  M1  MX
  TGIF2LX MUTATED     8   0   0
  TGIF2LX WILD-TYPE 157   3   6
D35V8, multiclass
    clus
vv   TGIF2LX MUTATED TGIF2LX WILD-TYPE
  M0               8               157
  M1               0                 3
  MX               0                 6
                   vv
clus                 I II III+IV
  TGIF2LX MUTATED    8  0      1
  TGIF2LX WILD-TYPE 89 38     40
D35V9, multiclass
        clus
vv       TGIF2LX MUTATED TGIF2LX WILD-TYPE
  I                    8                89
  II                   0                38
  III+IV               1                40
D35V10, binary
                   cls
clus                  0   1
  TGIF2LX MUTATED     1   8
  TGIF2LX WILD-TYPE   3 166
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TGIF2LX MUTATED      1    8
  TGIF2LX WILD-TYPE    3  166
     clus
vv    TGIF2LX MUTATED TGIF2LX WILD-TYPE
  NO                1                 3
  YES               8               166
D35V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  TGIF2LX MUTATED                                             3
  TGIF2LX WILD-TYPE                                          91
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  TGIF2LX MUTATED                                        2              2
  TGIF2LX WILD-TYPE                                     41             26
                   vv
clus                LIFELONG NON-SMOKER
  TGIF2LX MUTATED                     2
  TGIF2LX WILD-TYPE                   6
D35V12, multiclass
                                             clus
vv                                            TGIF2LX MUTATED TGIF2LX WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               3                91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                41
  CURRENT SMOKER                                            2                26
  LIFELONG NON-SMOKER                                       2                 6
D35V13, continuous
                   vv
clus                 R0  R1  R2  RX
  TGIF2LX MUTATED     7   0   1   0
  TGIF2LX WILD-TYPE 140   2   3  10
D35V14, multiclass
    clus
vv   TGIF2LX MUTATED TGIF2LX WILD-TYPE
  R0               7               140
  R1               0                 2
  R2               1                 3
  RX               0                10

Clustering(36) Variable = ASCL4 MUTATION ANALYSIS
D36V1, survival
                 sevent
clus2              0  1
  ASCL4 MUTATED    2  3
  ASCL4 WILD-TYPE 95 67
  ASCL4 MUTATED ASCL4 WILD-TYPE 
              5             162 
  ASCL4 MUTATED ASCL4 WILD-TYPE 
              3              67 
$`ASCL4 MUTATED`
TCGA-22-4613 TCGA-33-4566 TCGA-37-4141 TCGA-66-2755 TCGA-66-2791 
       11.77       173.79         0.39         0.92         5.03 

$`ASCL4 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 
       38.17        34.75        13.12        19.30        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       97.94        43.10       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 
        4.96         3.95         0.43         7.82         6.81         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2792 
        1.94        25.97        40.01        22.98         4.04        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  ASCL4 MUTATED ASCL4 WILD-TYPE 
           0.39            0.10 
  ASCL4 MUTATED ASCL4 WILD-TYPE 
         173.79          141.34 
  ASCL4 MUTATED ASCL4 WILD-TYPE 
           5.03           18.46 
[1] "0.4 - 173.8 (5.0)"  "0.1 - 141.3 (18.5)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "ASCL4 MUTATED" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ASCL4 WILD-TYPE"   "ASCL4 MUTATED" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE"   "ASCL4 MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE"   "ASCL4 MUTATED" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE"   "ASCL4 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "ASCL4 MUTATED" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ASCL4 WILD-TYPE"   "ASCL4 MUTATED" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE"   "ASCL4 MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE"   "ASCL4 MUTATED" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE"   "ASCL4 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "ASCL4 MUTATED" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ASCL4 WILD-TYPE"   "ASCL4 MUTATED" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE"   "ASCL4 MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE"   "ASCL4 MUTATED" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE"   "ASCL4 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
[1] "hr=" "1"  
D36V2, continuous
D36V3, binary
                 cls
clus                0   1
  ASCL4 MUTATED     2   4
  ASCL4 WILD-TYPE  45 127
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ASCL4 MUTATED      2    4
  ASCL4 WILD-TYPE   45  127
        clus
vv       ASCL4 MUTATED ASCL4 WILD-TYPE
  FEMALE             2              45
  MALE               4             127
D36V4, continuous
[1] "Remove cluster labels:" "ASCL4 MUTATED"         
clus
  ASCL4 MUTATED ASCL4 WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-4604      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  ASCL4 MUTATED                                       0
  ASCL4 WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  ASCL4 MUTATED                                        0
  ASCL4 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ASCL4 MUTATED                                                             6
  ASCL4 WILD-TYPE                                                         166
D36V5, multiclass
                                                             clus
vv                                                            ASCL4 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             6
                                                             clus
vv                                                            ASCL4 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             166
                 vv
clus               T1  T2  T3  T4
  ASCL4 MUTATED     2   4   0   0
  ASCL4 WILD-TYPE  34 112  14  12
D36V6, multiclass
    clus
vv   ASCL4 MUTATED ASCL4 WILD-TYPE
  T1             2              34
  T2             4             112
  T3             0              14
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  ASCL4 MUTATED     5   0   0   1
  ASCL4 WILD-TYPE 112  39  17   4
D36V7, multiclass
    clus
vv   ASCL4 MUTATED ASCL4 WILD-TYPE
  N0             5             112
  N1             0              39
  N2             0              17
  N3             1               4
                 vv
clus               M0  M1  MX
  ASCL4 MUTATED     6   0   0
  ASCL4 WILD-TYPE 159   3   6
D36V8, multiclass
    clus
vv   ASCL4 MUTATED ASCL4 WILD-TYPE
  M0             6             159
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  ASCL4 MUTATED    5  0      1
  ASCL4 WILD-TYPE 92 38     40
D36V9, multiclass
        clus
vv       ASCL4 MUTATED ASCL4 WILD-TYPE
  I                  5              92
  II                 0              38
  III+IV             1              40
D36V10, binary
                 cls
clus                0   1
  ASCL4 MUTATED     0   6
  ASCL4 WILD-TYPE   4 168
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ASCL4 MUTATED      0    6
  ASCL4 WILD-TYPE    4  168
     clus
vv    ASCL4 MUTATED ASCL4 WILD-TYPE
  NO              0               4
  YES             6             168
D36V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  ASCL4 MUTATED                                             2
  ASCL4 WILD-TYPE                                          92
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  ASCL4 MUTATED                                        2              1
  ASCL4 WILD-TYPE                                     41             27
                 vv
clus              LIFELONG NON-SMOKER
  ASCL4 MUTATED                     1
  ASCL4 WILD-TYPE                   7
D36V12, multiclass
                                             clus
vv                                            ASCL4 MUTATED ASCL4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             2              92
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     1               7
D36V13, continuous
                 vv
clus               R0  R1  R2  RX
  ASCL4 MUTATED     5   1   0   0
  ASCL4 WILD-TYPE 142   1   4  10
D36V14, multiclass
    clus
vv   ASCL4 MUTATED ASCL4 WILD-TYPE
  R0             5             142
  R1             1               1
  R2             0               4
  RX             0              10

Clustering(37) Variable = REG3G MUTATION ANALYSIS
D37V1, survival
                 sevent
clus2              0  1
  REG3G MUTATED    8  0
  REG3G WILD-TYPE 89 70
  REG3G MUTATED REG3G WILD-TYPE 
              8             159 
  REG3G MUTATED REG3G WILD-TYPE 
              0              70 
$`REG3G MUTATED`
TCGA-18-5592 TCGA-22-5471 TCGA-34-5231 TCGA-37-4141 TCGA-37-5819 TCGA-43-6143 
        3.02        31.69        50.24         0.39         3.39         7.00 
TCGA-66-2792 TCGA-85-6561 
       30.02         0.79 

$`REG3G WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 
       43.76         6.15         2.79        90.51        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5472 TCGA-22-5473 
       34.75        13.12        19.30        11.77        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
        2.63        61.61        32.84        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-39-5016 TCGA-39-5019 
        3.95         0.43         7.82         6.81        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 
       18.08        11.57        18.84         8.48         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
       21.07         0.99         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2793 TCGA-66-2794 
       40.01        22.98         4.04         5.03        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
        4.01        49.05         0.36 

  REG3G MUTATED REG3G WILD-TYPE 
           0.39            0.10 
  REG3G MUTATED REG3G WILD-TYPE 
          50.24          173.79 
  REG3G MUTATED REG3G WILD-TYPE 
          5.195          18.080 
[1] "0.4 - 50.2 (5.2)"   "0.1 - 173.8 (18.1)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"REG3G WILD-TYPE"   "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"REG3G WILD-TYPE"   "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE"   "REG3G MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE"   "REG3G MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
  "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"REG3G WILD-TYPE" "REG3G WILD-TYPE"   "REG3G MUTATED" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"REG3G WILD-TYPE"   "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"REG3G WILD-TYPE"   "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE"   "REG3G MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE"   "REG3G MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
  "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"REG3G WILD-TYPE" "REG3G WILD-TYPE"   "REG3G MUTATED" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"REG3G WILD-TYPE"   "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"REG3G WILD-TYPE"   "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE"   "REG3G MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE"   "REG3G MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
  "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"REG3G WILD-TYPE" "REG3G WILD-TYPE"   "REG3G MUTATED" 
[1] "hr="     "2.6e+07"
D37V2, continuous
D37V3, binary
                 cls
clus                0   1
  REG3G MUTATED     1   7
  REG3G WILD-TYPE  46 124
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG3G MUTATED      1    7
  REG3G WILD-TYPE   46  124
        clus
vv       REG3G MUTATED REG3G WILD-TYPE
  FEMALE             1              46
  MALE               7             124
D37V4, continuous
[1] "Remove cluster labels:" "REG3G MUTATED"         
clus
  REG3G MUTATED REG3G WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-4604      TCGA-22-4613      TCGA-22-5472      TCGA-22-5473 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-5492      TCGA-34-5234      TCGA-37-4133      TCGA-37-4135 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  REG3G MUTATED                                       1
  REG3G WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  REG3G MUTATED                                        0
  REG3G WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  REG3G MUTATED                                                             7
  REG3G WILD-TYPE                                                         165
D37V5, multiclass
                                                             clus
vv                                                            REG3G MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             7
                                                             clus
vv                                                            REG3G WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             165
                 vv
clus               T1  T2  T3  T4
  REG3G MUTATED     2   5   1   0
  REG3G WILD-TYPE  34 111  13  12
D37V6, multiclass
    clus
vv   REG3G MUTATED REG3G WILD-TYPE
  T1             2              34
  T2             5             111
  T3             1              13
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  REG3G MUTATED     6   1   1   0
  REG3G WILD-TYPE 111  38  16   5
D37V7, multiclass
    clus
vv   REG3G MUTATED REG3G WILD-TYPE
  N0             6             111
  N1             1              38
  N2             1              16
  N3             0               5
                 vv
clus               M0  M1  MX
  REG3G MUTATED     8   0   0
  REG3G WILD-TYPE 157   3   6
D37V8, multiclass
    clus
vv   REG3G MUTATED REG3G WILD-TYPE
  M0             8             157
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  REG3G MUTATED    4  3      1
  REG3G WILD-TYPE 93 35     40
D37V9, multiclass
        clus
vv       REG3G MUTATED REG3G WILD-TYPE
  I                  4              93
  II                 3              35
  III+IV             1              40
D37V10, binary
                 cls
clus                0   1
  REG3G MUTATED     1   7
  REG3G WILD-TYPE   3 167
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG3G MUTATED      1    7
  REG3G WILD-TYPE    3  167
     clus
vv    REG3G MUTATED REG3G WILD-TYPE
  NO              1               3
  YES             7             167
D37V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  REG3G MUTATED                                             4
  REG3G WILD-TYPE                                          90
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  REG3G MUTATED                                        2              0
  REG3G WILD-TYPE                                     41             28
                 vv
clus              LIFELONG NON-SMOKER
  REG3G MUTATED                     2
  REG3G WILD-TYPE                   6
D37V12, multiclass
                                             clus
vv                                            REG3G MUTATED REG3G WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     2               6
D37V13, continuous
                 vv
clus               R0  R1  R2  RX
  REG3G MUTATED     5   0   1   1
  REG3G WILD-TYPE 142   2   3   9
D37V14, multiclass
    clus
vv   REG3G MUTATED REG3G WILD-TYPE
  R0             5             142
  R1             0               2
  R2             1               3
  RX             1               9

Clustering(38) Variable = CBLN4 MUTATION ANALYSIS
D38V1, survival
                 sevent
clus2              0  1
  CBLN4 MUTATED    2  3
  CBLN4 WILD-TYPE 95 67
  CBLN4 MUTATED CBLN4 WILD-TYPE 
              5             162 
  CBLN4 MUTATED CBLN4 WILD-TYPE 
              3              67 
$`CBLN4 MUTATED`
TCGA-18-3411 TCGA-21-5782 TCGA-39-5027 TCGA-39-5028 TCGA-60-2715 
       46.52        31.63        60.76         1.71        35.34 

$`CBLN4 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 
       12.16         4.47        81.07        79.46         4.80        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5784 
       46.88        60.89        34.78        15.55         9.30        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       29.19         9.01        47.87        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  CBLN4 MUTATED CBLN4 WILD-TYPE 
           1.71            0.10 
  CBLN4 MUTATED CBLN4 WILD-TYPE 
          60.76          173.79 
  CBLN4 MUTATED CBLN4 WILD-TYPE 
          35.34           16.78 
[1] "1.7 - 60.8 (35.3)"  "0.1 - 173.8 (16.8)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"CBLN4 WILD-TYPE"   "CBLN4 MUTATED" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "CBLN4 MUTATED" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE"   "CBLN4 MUTATED"   "CBLN4 MUTATED" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"CBLN4 WILD-TYPE"   "CBLN4 MUTATED" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"CBLN4 WILD-TYPE"   "CBLN4 MUTATED" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "CBLN4 MUTATED" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE"   "CBLN4 MUTATED"   "CBLN4 MUTATED" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"CBLN4 WILD-TYPE"   "CBLN4 MUTATED" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"CBLN4 WILD-TYPE"   "CBLN4 MUTATED" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "CBLN4 MUTATED" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE"   "CBLN4 MUTATED"   "CBLN4 MUTATED" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"CBLN4 WILD-TYPE"   "CBLN4 MUTATED" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
[1] "hr=" "1.1"
D38V2, continuous
D38V3, binary
                 cls
clus                0   1
  CBLN4 MUTATED     2   3
  CBLN4 WILD-TYPE  45 128
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CBLN4 MUTATED      2    3
  CBLN4 WILD-TYPE   45  128
        clus
vv       CBLN4 MUTATED CBLN4 WILD-TYPE
  FEMALE             2              45
  MALE               3             128
D38V4, continuous
[1] "Remove cluster labels:" "CBLN4 MUTATED"         
clus
  CBLN4 MUTATED CBLN4 WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5787      TCGA-22-4591      TCGA-22-4593 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-4595      TCGA-22-4599      TCGA-22-4601      TCGA-22-4604 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2725      TCGA-60-2726 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  CBLN4 MUTATED                                       0
  CBLN4 WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  CBLN4 MUTATED                                        0
  CBLN4 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CBLN4 MUTATED                                                             5
  CBLN4 WILD-TYPE                                                         167
D38V5, multiclass
                                                             clus
vv                                                            CBLN4 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             5
                                                             clus
vv                                                            CBLN4 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             167
                 vv
clus               T1  T2  T3  T4
  CBLN4 MUTATED     1   3   0   1
  CBLN4 WILD-TYPE  35 113  14  11
D38V6, multiclass
    clus
vv   CBLN4 MUTATED CBLN4 WILD-TYPE
  T1             1              35
  T2             3             113
  T3             0              14
  T4             1              11
                 vv
clus               N0  N1  N2  N3
  CBLN4 MUTATED     3   1   1   0
  CBLN4 WILD-TYPE 114  38  16   5
D38V7, multiclass
    clus
vv   CBLN4 MUTATED CBLN4 WILD-TYPE
  N0             3             114
  N1             1              38
  N2             1              16
  N3             0               5
                 vv
clus               M0  M1  MX
  CBLN4 MUTATED     5   0   0
  CBLN4 WILD-TYPE 160   3   6
D38V8, multiclass
    clus
vv   CBLN4 MUTATED CBLN4 WILD-TYPE
  M0             5             160
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  CBLN4 MUTATED    3  0      2
  CBLN4 WILD-TYPE 94 38     39
D38V9, multiclass
        clus
vv       CBLN4 MUTATED CBLN4 WILD-TYPE
  I                  3              94
  II                 0              38
  III+IV             2              39
D38V10, binary
                 cls
clus                0   1
  CBLN4 MUTATED     0   5
  CBLN4 WILD-TYPE   4 169
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CBLN4 MUTATED      0    5
  CBLN4 WILD-TYPE    4  169
     clus
vv    CBLN4 MUTATED CBLN4 WILD-TYPE
  NO              0               4
  YES             5             169
D38V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  CBLN4 MUTATED                                             3
  CBLN4 WILD-TYPE                                          91
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  CBLN4 MUTATED                                        1              1
  CBLN4 WILD-TYPE                                     42             27
                 vv
clus              LIFELONG NON-SMOKER
  CBLN4 MUTATED                     0
  CBLN4 WILD-TYPE                   8
D38V12, multiclass
                                             clus
vv                                            CBLN4 MUTATED CBLN4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              42
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D38V13, continuous
                 vv
clus               R0  R1  R2  RX
  CBLN4 MUTATED     4   0   0   1
  CBLN4 WILD-TYPE 143   2   4   9
D38V14, multiclass
    clus
vv   CBLN4 MUTATED CBLN4 WILD-TYPE
  R0             4             143
  R1             0               2
  R2             0               4
  RX             1               9

Clustering(39) Variable = OR10G8 MUTATION ANALYSIS
D39V1, survival
                  sevent
clus2               0  1
  OR10G8 MUTATED    6  4
  OR10G8 WILD-TYPE 91 66
  OR10G8 MUTATED OR10G8 WILD-TYPE 
              10              157 
  OR10G8 MUTATED OR10G8 WILD-TYPE 
               4               66 
$`OR10G8 MUTATED`
TCGA-18-3409 TCGA-18-3410 TCGA-22-5473 TCGA-22-5485 TCGA-33-4566 TCGA-33-4583 
       79.46         4.80        63.52        30.08       173.79       141.34 
TCGA-43-3920 TCGA-43-6647 TCGA-60-2708 TCGA-85-6561 
       18.84         6.02        68.45         0.79 

$`OR10G8 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
       12.16         4.47        81.07        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 
       13.12        19.30        11.77        31.69        64.90        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5489 TCGA-22-5491 
       44.22         0.79        71.34        11.74        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 
       16.60        82.98       114.05        97.94        43.10       103.53 
TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 
       14.07        19.76         2.63        61.61        32.84        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
       22.95         5.52         4.96         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        6.81         0.39         3.39        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
       27.35        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-5668 TCGA-43-6143 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
       11.57         8.48         7.00         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 
        0.95         0.59         0.39         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2709 
        0.10         2.04         1.02        10.22        21.70        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 
        0.36 

  OR10G8 MUTATED OR10G8 WILD-TYPE 
            0.79             0.10 
  OR10G8 MUTATED OR10G8 WILD-TYPE 
          173.79           115.59 
  OR10G8 MUTATED OR10G8 WILD-TYPE 
            46.8             16.6 
[1] "0.8 - 173.8 (46.8)" "0.1 - 115.6 (16.6)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
  "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
  "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
  "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
  "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
  "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
  "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
[1] "hr=" "2.8"
D39V2, continuous
D39V3, binary
                  cls
clus                 0   1
  OR10G8 MUTATED     3   7
  OR10G8 WILD-TYPE  44 124
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10G8 MUTATED      3    7
  OR10G8 WILD-TYPE   44  124
        clus
vv       OR10G8 MUTATED OR10G8 WILD-TYPE
  FEMALE              3               44
  MALE                7              124
D39V4, continuous
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR10G8 MUTATED                                       1
  OR10G8 WILD-TYPE                                     4
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR10G8 MUTATED                                        0
  OR10G8 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR10G8 MUTATED                                                             9
  OR10G8 WILD-TYPE                                                         163
D39V5, multiclass
                                                             clus
vv                                                            OR10G8 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              9
                                                             clus
vv                                                            OR10G8 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              163
                  vv
clus                T1  T2  T3  T4
  OR10G8 MUTATED     3   5   2   0
  OR10G8 WILD-TYPE  33 111  12  12
D39V6, multiclass
    clus
vv   OR10G8 MUTATED OR10G8 WILD-TYPE
  T1              3               33
  T2              5              111
  T3              2               12
  T4              0               12
                  vv
clus                N0  N1  N2  N3
  OR10G8 MUTATED     8   2   0   0
  OR10G8 WILD-TYPE 109  37  17   5
D39V7, multiclass
    clus
vv   OR10G8 MUTATED OR10G8 WILD-TYPE
  N0              8              109
  N1              2               37
  N2              0               17
  N3              0                5
                  vv
clus                M0  M1  MX
  OR10G8 MUTATED     9   0   1
  OR10G8 WILD-TYPE 156   3   5
D39V8, multiclass
    clus
vv   OR10G8 MUTATED OR10G8 WILD-TYPE
  M0              9              156
  M1              0                3
  MX              1                5
                  vv
clus                I II III+IV
  OR10G8 MUTATED    5  3      1
  OR10G8 WILD-TYPE 92 35     40
D39V9, multiclass
        clus
vv       OR10G8 MUTATED OR10G8 WILD-TYPE
  I                   5               92
  II                  3               35
  III+IV              1               40
D39V10, binary
                  cls
clus                 0   1
  OR10G8 MUTATED     0  10
  OR10G8 WILD-TYPE   4 164
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10G8 MUTATED      0   10
  OR10G8 WILD-TYPE    4  164
     clus
vv    OR10G8 MUTATED OR10G8 WILD-TYPE
  NO               0                4
  YES             10              164
D39V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR10G8 MUTATED                                             5
  OR10G8 WILD-TYPE                                          89
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR10G8 MUTATED                                        3              2
  OR10G8 WILD-TYPE                                     40             26
                  vv
clus               LIFELONG NON-SMOKER
  OR10G8 MUTATED                     0
  OR10G8 WILD-TYPE                   8
D39V12, multiclass
                                             clus
vv                                            OR10G8 MUTATED OR10G8 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              5               89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   3               40
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0                8
D39V13, continuous
                  vv
clus                R0  R1  R2  RX
  OR10G8 MUTATED     9   0   0   1
  OR10G8 WILD-TYPE 138   2   4   9
D39V14, multiclass
    clus
vv   OR10G8 MUTATED OR10G8 WILD-TYPE
  R0              9              138
  R1              0                2
  R2              0                4
  RX              1                9

Clustering(40) Variable = OR4M1 MUTATION ANALYSIS
D40V1, survival
                 sevent
clus2              0  1
  OR4M1 MUTATED    8  5
  OR4M1 WILD-TYPE 89 65
  OR4M1 MUTATED OR4M1 WILD-TYPE 
             13             154 
  OR4M1 MUTATED OR4M1 WILD-TYPE 
              5              65 
$`OR4M1 MUTATED`
TCGA-18-3411 TCGA-18-3419 TCGA-21-5784 TCGA-21-5786 TCGA-22-4593 TCGA-34-5929 
       46.52         1.61        29.85        21.57        35.08         4.96 
TCGA-39-5027 TCGA-43-6143 TCGA-51-4080 TCGA-60-2724 TCGA-66-2744 TCGA-66-2782 
       60.76         7.00         0.39         1.22         0.99        12.00 
TCGA-66-2791 
        5.03 

$`OR4M1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 
       12.16         4.47        81.07        79.46         4.80        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        28.34        24.92        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5787 
       60.89        34.78        15.55         9.30        31.63        10.82 
TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 
        7.33         4.31         1.74        14.10        27.02        20.45 
TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 
       24.13        38.17        34.75        13.12        19.30        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       31.69        64.90        63.52        14.60        44.22         0.79 
TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       71.34        11.74        30.08        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       82.98       114.05        97.94        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 
      141.34        14.07        19.76         2.63        61.61        32.84 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
       14.07        22.95         5.52         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        6.81         0.39         3.39        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       55.17        70.03         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       15.58        35.64         0.79        17.88        18.08        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
       18.84         8.48         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.95         0.59         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 
        3.16        26.07        24.10        22.78        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       16.96        43.10        21.07         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       19.00        12.03         3.98        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       40.01        22.98         4.04        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  OR4M1 MUTATED OR4M1 WILD-TYPE 
           0.39            0.10 
  OR4M1 MUTATED OR4M1 WILD-TYPE 
          60.76          173.79 
  OR4M1 MUTATED OR4M1 WILD-TYPE 
           7.00           18.46 
[1] "0.4 - 60.8 (7.0)"   "0.1 - 173.8 (18.5)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR4M1 WILD-TYPE"   "OR4M1 MUTATED"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "OR4M1 MUTATED" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR4M1 WILD-TYPE"   "OR4M1 MUTATED"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "OR4M1 MUTATED" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR4M1 WILD-TYPE"   "OR4M1 MUTATED"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "OR4M1 MUTATED" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
[1] "hr=" "1.4"
D40V2, continuous
D40V3, binary
                 cls
clus                0   1
  OR4M1 MUTATED     3  10
  OR4M1 WILD-TYPE  44 121
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4M1 MUTATED      3   10
  OR4M1 WILD-TYPE   44  121
        clus
vv       OR4M1 MUTATED OR4M1 WILD-TYPE
  FEMALE             3              44
  MALE              10             121
D40V4, continuous
[1] "Remove cluster labels:" "OR4M1 MUTATED"         
clus
  OR4M1 MUTATED OR4M1 WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5787      TCGA-22-4591      TCGA-22-4595 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4613 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-5472      TCGA-22-5473      TCGA-22-5474      TCGA-22-5477 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-5478      TCGA-22-5480      TCGA-22-5482      TCGA-22-5485 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-34-5234 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-5819      TCGA-60-2698 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2725      TCGA-60-2726 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR4M1 MUTATED                                       2
  OR4M1 WILD-TYPE                                     3
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR4M1 MUTATED                                        0
  OR4M1 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR4M1 MUTATED                                                            11
  OR4M1 WILD-TYPE                                                         161
D40V5, multiclass
                                                             clus
vv                                                            OR4M1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            11
                                                             clus
vv                                                            OR4M1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             161
                 vv
clus               T1  T2  T3  T4
  OR4M1 MUTATED     0  10   2   1
  OR4M1 WILD-TYPE  36 106  12  11
D40V6, multiclass
    clus
vv   OR4M1 MUTATED OR4M1 WILD-TYPE
  T1             0              36
  T2            10             106
  T3             2              12
  T4             1              11
                 vv
clus               N0  N1  N2  N3
  OR4M1 MUTATED     7   4   1   1
  OR4M1 WILD-TYPE 110  35  16   4
D40V7, multiclass
    clus
vv   OR4M1 MUTATED OR4M1 WILD-TYPE
  N0             7             110
  N1             4              35
  N2             1              16
  N3             1               4
                 vv
clus               M0  M1  MX
  OR4M1 MUTATED    12   0   0
  OR4M1 WILD-TYPE 153   3   6
D40V8, multiclass
    clus
vv   OR4M1 MUTATED OR4M1 WILD-TYPE
  M0            12             153
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  OR4M1 MUTATED    5  4      4
  OR4M1 WILD-TYPE 92 34     37
D40V9, multiclass
        clus
vv       OR4M1 MUTATED OR4M1 WILD-TYPE
  I                  5              92
  II                 4              34
  III+IV             4              37
D40V10, binary
                 cls
clus                0   1
  OR4M1 MUTATED     0  13
  OR4M1 WILD-TYPE   4 161
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4M1 MUTATED      0   13
  OR4M1 WILD-TYPE    4  161
     clus
vv    OR4M1 MUTATED OR4M1 WILD-TYPE
  NO              0               4
  YES            13             161
D40V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR4M1 MUTATED                                             9
  OR4M1 WILD-TYPE                                          85
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR4M1 MUTATED                                        1              3
  OR4M1 WILD-TYPE                                     42             25
                 vv
clus              LIFELONG NON-SMOKER
  OR4M1 MUTATED                     0
  OR4M1 WILD-TYPE                   8
D40V12, multiclass
                                             clus
vv                                            OR4M1 MUTATED OR4M1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             9              85
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              42
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     0               8
D40V13, continuous
                 vv
clus               R0  R1  R2  RX
  OR4M1 MUTATED    10   1   0   1
  OR4M1 WILD-TYPE 137   1   4   9
D40V14, multiclass
    clus
vv   OR4M1 MUTATED OR4M1 WILD-TYPE
  R0            10             137
  R1             1               1
  R2             0               4
  RX             1               9

Clustering(41) Variable = OR2T2 MUTATION ANALYSIS
D41V1, survival
                 sevent
clus2              0  1
  OR2T2 MUTATED    4  2
  OR2T2 WILD-TYPE 93 68
  OR2T2 MUTATED OR2T2 WILD-TYPE 
              6             161 
  OR2T2 MUTATED OR2T2 WILD-TYPE 
              2              68 
$`OR2T2 MUTATED`
TCGA-18-4083 TCGA-33-4566 TCGA-37-5819 TCGA-39-5027 TCGA-39-5035 TCGA-66-2770 
        6.15       173.79         3.39        60.76        15.58        23.01 

$`OR2T2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
       43.76         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       97.94        43.10       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 
       74.07        44.71        68.58        55.17        70.03         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
       24.33         1.94        27.35        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01         2.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  OR2T2 MUTATED OR2T2 WILD-TYPE 
           3.39            0.10 
  OR2T2 MUTATED OR2T2 WILD-TYPE 
         173.79          141.34 
  OR2T2 MUTATED OR2T2 WILD-TYPE 
         19.295          17.880 
[1] "3.4 - 173.8 (19.3)" "0.1 - 141.3 (17.9)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2T2 WILD-TYPE"   "OR2T2 MUTATED" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2T2 WILD-TYPE"   "OR2T2 MUTATED" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "OR2T2 MUTATED" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE"   "OR2T2 MUTATED" "OR2T2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE"   "OR2T2 MUTATED" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2T2 WILD-TYPE"   "OR2T2 MUTATED" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2T2 WILD-TYPE"   "OR2T2 MUTATED" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2T2 WILD-TYPE"   "OR2T2 MUTATED" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "OR2T2 MUTATED" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE"   "OR2T2 MUTATED" "OR2T2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE"   "OR2T2 MUTATED" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2T2 WILD-TYPE"   "OR2T2 MUTATED" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2T2 WILD-TYPE"   "OR2T2 MUTATED" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2T2 WILD-TYPE"   "OR2T2 MUTATED" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "OR2T2 MUTATED" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE"   "OR2T2 MUTATED" "OR2T2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE"   "OR2T2 MUTATED" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2T2 WILD-TYPE"   "OR2T2 MUTATED" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
[1] "hr=" "3.5"
D41V2, continuous
D41V3, binary
                 cls
clus                0   1
  OR2T2 MUTATED     1   6
  OR2T2 WILD-TYPE  46 125
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2T2 MUTATED      1    6
  OR2T2 WILD-TYPE   46  125
        clus
vv       OR2T2 MUTATED OR2T2 WILD-TYPE
  FEMALE             1              46
  MALE               6             125
D41V4, continuous
[1] "Remove cluster labels:" "OR2T2 MUTATED"         
clus
  OR2T2 MUTATED OR2T2 WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-4604      TCGA-22-4613      TCGA-22-5472      TCGA-22-5473 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-5492      TCGA-34-5234      TCGA-37-4133      TCGA-37-4135 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR2T2 MUTATED                                       0
  OR2T2 WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR2T2 MUTATED                                        0
  OR2T2 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR2T2 MUTATED                                                             7
  OR2T2 WILD-TYPE                                                         165
D41V5, multiclass
                                                             clus
vv                                                            OR2T2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             7
                                                             clus
vv                                                            OR2T2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             165
                 vv
clus               T1  T2  T3  T4
  OR2T2 MUTATED     1   5   0   1
  OR2T2 WILD-TYPE  35 111  14  11
D41V6, multiclass
    clus
vv   OR2T2 MUTATED OR2T2 WILD-TYPE
  T1             1              35
  T2             5             111
  T3             0              14
  T4             1              11
                 vv
clus               N0  N1  N2  N3
  OR2T2 MUTATED     5   1   1   0
  OR2T2 WILD-TYPE 112  38  16   5
D41V7, multiclass
    clus
vv   OR2T2 MUTATED OR2T2 WILD-TYPE
  N0             5             112
  N1             1              38
  N2             1              16
  N3             0               5
                 vv
clus               M0  M1  MX
  OR2T2 MUTATED     7   0   0
  OR2T2 WILD-TYPE 158   3   6
D41V8, multiclass
    clus
vv   OR2T2 MUTATED OR2T2 WILD-TYPE
  M0             7             158
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  OR2T2 MUTATED    4  2      1
  OR2T2 WILD-TYPE 93 36     40
D41V9, multiclass
        clus
vv       OR2T2 MUTATED OR2T2 WILD-TYPE
  I                  4              93
  II                 2              36
  III+IV             1              40
D41V10, binary
                 cls
clus                0   1
  OR2T2 MUTATED     0   7
  OR2T2 WILD-TYPE   4 167
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2T2 MUTATED      0    7
  OR2T2 WILD-TYPE    4  167
     clus
vv    OR2T2 MUTATED OR2T2 WILD-TYPE
  NO              0               4
  YES             7             167
D41V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR2T2 MUTATED                                             3
  OR2T2 WILD-TYPE                                          91
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR2T2 MUTATED                                        2              2
  OR2T2 WILD-TYPE                                     41             26
                 vv
clus              LIFELONG NON-SMOKER
  OR2T2 MUTATED                     0
  OR2T2 WILD-TYPE                   8
D41V12, multiclass
                                             clus
vv                                            OR2T2 MUTATED OR2T2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0               8
D41V13, continuous
                 vv
clus               R0  R1  R2  RX
  OR2T2 MUTATED     6   1   0   0
  OR2T2 WILD-TYPE 141   1   4  10
D41V14, multiclass
    clus
vv   OR2T2 MUTATED OR2T2 WILD-TYPE
  R0             6             141
  R1             1               1
  R2             0               4
  RX             0              10

Clustering(42) Variable = OR2T8 MUTATION ANALYSIS
D42V1, survival
                 sevent
clus2              0  1
  OR2T8 MUTATED    2  6
  OR2T8 WILD-TYPE 95 64
  OR2T8 MUTATED OR2T8 WILD-TYPE 
              8             159 
  OR2T8 MUTATED OR2T8 WILD-TYPE 
              6              64 
$`OR2T8 MUTATED`
TCGA-18-3412 TCGA-18-4086 TCGA-21-5782 TCGA-22-4599 TCGA-33-4538 TCGA-34-2600 
       11.34         2.79        31.63        38.17        97.94        61.61 
TCGA-37-5819 TCGA-60-2722 
        3.39        24.10 

$`OR2T8 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        6.15        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5784 TCGA-21-5786 
       60.89        34.78        15.55         9.30        29.85        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 
       20.45        35.08        24.13        34.75        13.12        19.30 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
        0.79        71.34        11.74        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       16.60        82.98       114.05        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2608 TCGA-34-5231 
      141.34        14.07        19.76         2.63        32.84        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
       22.95         5.52         4.96         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        6.81         0.39        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.76         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       15.58        35.64         0.79        17.88        18.08        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       18.84         8.48         7.00         6.02         2.79         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 
       28.93         0.10         2.04         1.02        10.22        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 
       35.34        30.61         3.16        26.07        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
       23.64        11.77        16.96        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  OR2T8 MUTATED OR2T8 WILD-TYPE 
           2.79            0.10 
  OR2T8 MUTATED OR2T8 WILD-TYPE 
          97.94          173.79 
  OR2T8 MUTATED OR2T8 WILD-TYPE 
         27.865          16.960 
[1] "2.8 - 97.9 (27.9)"  "0.1 - 173.8 (17.0)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
[1] "hr=" "1.5"
D42V2, continuous
D42V3, binary
                 cls
clus                0   1
  OR2T8 MUTATED     3   5
  OR2T8 WILD-TYPE  44 126
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2T8 MUTATED      3    5
  OR2T8 WILD-TYPE   44  126
        clus
vv       OR2T8 MUTATED OR2T8 WILD-TYPE
  FEMALE             3              44
  MALE               5             126
D42V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR2T8 MUTATED                                       0
  OR2T8 WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR2T8 MUTATED                                        0
  OR2T8 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR2T8 MUTATED                                                             8
  OR2T8 WILD-TYPE                                                         164
D42V5, multiclass
                                                             clus
vv                                                            OR2T8 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             8
                                                             clus
vv                                                            OR2T8 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             164
                 vv
clus               T1  T2  T3  T4
  OR2T8 MUTATED     1   7   0   0
  OR2T8 WILD-TYPE  35 109  14  12
D42V6, multiclass
    clus
vv   OR2T8 MUTATED OR2T8 WILD-TYPE
  T1             1              35
  T2             7             109
  T3             0              14
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  OR2T8 MUTATED     5   1   2   0
  OR2T8 WILD-TYPE 112  38  15   5
D42V7, multiclass
    clus
vv   OR2T8 MUTATED OR2T8 WILD-TYPE
  N0             5             112
  N1             1              38
  N2             2              15
  N3             0               5
                 vv
clus               M0  M1  MX
  OR2T8 MUTATED     8   0   0
  OR2T8 WILD-TYPE 157   3   6
D42V8, multiclass
    clus
vv   OR2T8 MUTATED OR2T8 WILD-TYPE
  M0             8             157
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  OR2T8 MUTATED    5  1      2
  OR2T8 WILD-TYPE 92 37     39
D42V9, multiclass
        clus
vv       OR2T8 MUTATED OR2T8 WILD-TYPE
  I                  5              92
  II                 1              37
  III+IV             2              39
D42V10, binary
                 cls
clus                0   1
  OR2T8 MUTATED     0   8
  OR2T8 WILD-TYPE   4 166
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2T8 MUTATED      0    8
  OR2T8 WILD-TYPE    4  166
     clus
vv    OR2T8 MUTATED OR2T8 WILD-TYPE
  NO              0               4
  YES             8             166
D42V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR2T8 MUTATED                                             4
  OR2T8 WILD-TYPE                                          90
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR2T8 MUTATED                                        2              2
  OR2T8 WILD-TYPE                                     41             26
                 vv
clus              LIFELONG NON-SMOKER
  OR2T8 MUTATED                     0
  OR2T8 WILD-TYPE                   8
D42V12, multiclass
                                             clus
vv                                            OR2T8 MUTATED OR2T8 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0               8
D42V13, continuous
[1] "Remove cluster labels:" "OR2T8 MUTATED"         
clus
  OR2T8 MUTATED OR2T8 WILD-TYPE 
              2             103 
     TCGA-18-3406      TCGA-18-3417      TCGA-21-1078      TCGA-21-5786 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-21-5787      TCGA-22-0944      TCGA-22-1002      TCGA-22-1011 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-1012      TCGA-22-1016      TCGA-22-4591      TCGA-22-4593 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-4607      TCGA-22-4613      TCGA-22-5472      TCGA-22-5473 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5480      TCGA-22-5482      TCGA-22-5492 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-33-4533      TCGA-33-4547      TCGA-33-4582      TCGA-33-4583 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-33-4586      TCGA-34-5240      TCGA-34-5241      TCGA-37-4133 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-37-4135      TCGA-39-5021      TCGA-39-5022      TCGA-39-5024 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-39-5027      TCGA-39-5028      TCGA-39-5029      TCGA-39-5030 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-39-5031      TCGA-39-5035      TCGA-39-5036      TCGA-39-5037 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-39-5039      TCGA-43-2578      TCGA-43-3394      TCGA-43-3920 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-43-6143      TCGA-43-6647      TCGA-43-6770      TCGA-43-6771 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-56-1622      TCGA-56-5898      TCGA-56-6545      TCGA-56-6546 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2707      TCGA-60-2708      TCGA-60-2709      TCGA-60-2710 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2711      TCGA-60-2712      TCGA-60-2713      TCGA-60-2715 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2719      TCGA-60-2720      TCGA-60-2721      TCGA-60-2723 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2724      TCGA-60-2725      TCGA-60-2726      TCGA-63-6202 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2727      TCGA-66-2734      TCGA-66-2742      TCGA-66-2744 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2754      TCGA-66-2755      TCGA-66-2756      TCGA-66-2757 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2758      TCGA-66-2759      TCGA-66-2763      TCGA-66-2765 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2766      TCGA-66-2767      TCGA-66-2770      TCGA-66-2771 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2773      TCGA-66-2777      TCGA-66-2778      TCGA-66-2780 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2781      TCGA-66-2782      TCGA-66-2783      TCGA-66-2786 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
                 vv
clus               R0  R1  R2  RX
  OR2T8 MUTATED     7   0   0   1
  OR2T8 WILD-TYPE 140   2   4   9
D42V14, multiclass
    clus
vv   OR2T8 MUTATED OR2T8 WILD-TYPE
  R0             7             140
  R1             0               2
  R2             0               4
  RX             1               9

Clustering(43) Variable = SPANXN1 MUTATION ANALYSIS
D43V1, survival
                   sevent
clus2                0  1
  SPANXN1 MUTATED    5  0
  SPANXN1 WILD-TYPE 92 70
  SPANXN1 MUTATED SPANXN1 WILD-TYPE 
                5               162 
  SPANXN1 MUTATED SPANXN1 WILD-TYPE 
                0                70 
$`SPANXN1 MUTATED`
TCGA-18-3409 TCGA-21-1070 TCGA-33-4532 TCGA-34-5232 TCGA-60-2711 
       79.46       115.59        82.98        51.78        29.19 

$`SPANXN1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 
        6.15         2.79        90.51         3.02        27.16        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       62.86        56.32        16.60       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       61.61        32.84        50.24        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  SPANXN1 MUTATED SPANXN1 WILD-TYPE 
            29.19              0.10 
  SPANXN1 MUTATED SPANXN1 WILD-TYPE 
           115.59            173.79 
  SPANXN1 MUTATED SPANXN1 WILD-TYPE 
            79.46             16.09 
[1] "29.2 - 115.6 (79.5)" "0.1 - 173.8 (16.1)" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" "SPANXN1 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" "SPANXN1 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" "SPANXN1 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" "SPANXN1 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" "SPANXN1 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" "SPANXN1 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" "SPANXN1 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" "SPANXN1 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" "SPANXN1 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
[1] "hr="     "7.9e+07"
D43V2, continuous
D43V3, binary
                   cls
clus                  0   1
  SPANXN1 MUTATED     3   2
  SPANXN1 WILD-TYPE  44 129
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SPANXN1 MUTATED      3    2
  SPANXN1 WILD-TYPE   44  129
        clus
vv       SPANXN1 MUTATED SPANXN1 WILD-TYPE
  FEMALE               3                44
  MALE                 2               129
D43V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  SPANXN1 MUTATED                                       1
  SPANXN1 WILD-TYPE                                     4
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  SPANXN1 MUTATED                                        0
  SPANXN1 WILD-TYPE                                      1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SPANXN1 MUTATED                                                             4
  SPANXN1 WILD-TYPE                                                         168
D43V5, multiclass
                                                             clus
vv                                                            SPANXN1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               4
                                                             clus
vv                                                            SPANXN1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               168
                   vv
clus                 T1  T2  T3  T4
  SPANXN1 MUTATED     2   2   1   0
  SPANXN1 WILD-TYPE  34 114  13  12
D43V6, multiclass
    clus
vv   SPANXN1 MUTATED SPANXN1 WILD-TYPE
  T1               2                34
  T2               2               114
  T3               1                13
  T4               0                12
                   vv
clus                 N0  N1  N2  N3
  SPANXN1 MUTATED     4   1   0   0
  SPANXN1 WILD-TYPE 113  38  17   5
D43V7, multiclass
    clus
vv   SPANXN1 MUTATED SPANXN1 WILD-TYPE
  N0               4               113
  N1               1                38
  N2               0                17
  N3               0                 5
                   vv
clus                 M0  M1  MX
  SPANXN1 MUTATED     5   0   0
  SPANXN1 WILD-TYPE 160   3   6
D43V8, multiclass
    clus
vv   SPANXN1 MUTATED SPANXN1 WILD-TYPE
  M0               5               160
  M1               0                 3
  MX               0                 6
                   vv
clus                 I II III+IV
  SPANXN1 MUTATED    2  1      1
  SPANXN1 WILD-TYPE 95 37     40
D43V9, multiclass
        clus
vv       SPANXN1 MUTATED SPANXN1 WILD-TYPE
  I                    2                95
  II                   1                37
  III+IV               1                40
D43V10, binary
                   cls
clus                  0   1
  SPANXN1 MUTATED     0   5
  SPANXN1 WILD-TYPE   4 169
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SPANXN1 MUTATED      0    5
  SPANXN1 WILD-TYPE    4  169
     clus
vv    SPANXN1 MUTATED SPANXN1 WILD-TYPE
  NO                0                 4
  YES               5               169
D43V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  SPANXN1 MUTATED                                             2
  SPANXN1 WILD-TYPE                                          92
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  SPANXN1 MUTATED                                        1              1
  SPANXN1 WILD-TYPE                                     42             27
                   vv
clus                LIFELONG NON-SMOKER
  SPANXN1 MUTATED                     0
  SPANXN1 WILD-TYPE                   8
D43V12, multiclass
                                             clus
vv                                            SPANXN1 MUTATED SPANXN1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               2                92
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                42
  CURRENT SMOKER                                            1                27
  LIFELONG NON-SMOKER                                       0                 8
D43V13, continuous
[1] "Remove cluster labels:" "SPANXN1 MUTATED"       
clus
  SPANXN1 MUTATED SPANXN1 WILD-TYPE 
                1               104 
       TCGA-18-3406        TCGA-18-3417        TCGA-21-1078        TCGA-21-5782 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-21-5786        TCGA-21-5787        TCGA-22-0944        TCGA-22-1002 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-4591 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-4593        TCGA-22-4607        TCGA-22-4613        TCGA-22-5472 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-5473        TCGA-22-5474        TCGA-22-5480        TCGA-22-5482 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4533        TCGA-33-4547        TCGA-33-4582 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-33-4583        TCGA-33-4586        TCGA-34-5240        TCGA-34-5241 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-5819        TCGA-39-5021 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-6143        TCGA-43-6647 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-43-6770        TCGA-43-6771        TCGA-56-1622        TCGA-56-5898 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-60-2707        TCGA-60-2708 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2712        TCGA-60-2713 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-63-6202        TCGA-66-2727        TCGA-66-2734        TCGA-66-2742 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2770 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
                   vv
clus                 R0  R1  R2  RX
  SPANXN1 MUTATED     4   0   0   0
  SPANXN1 WILD-TYPE 143   2   4  10
D43V14, multiclass
    clus
vv   SPANXN1 MUTATED SPANXN1 WILD-TYPE
  R0               4               143
  R1               0                 2
  R2               0                 4
  RX               0                10

Clustering(44) Variable = C20ORF26 MUTATION ANALYSIS
D44V1, survival
                    sevent
clus2                 0  1
  C20ORF26 MUTATED   12  6
  C20ORF26 WILD-TYPE 85 64
  C20ORF26 MUTATED C20ORF26 WILD-TYPE 
                18                149 
  C20ORF26 MUTATED C20ORF26 WILD-TYPE 
                 6                 64 
$`C20ORF26 MUTATED`
TCGA-18-3409 TCGA-18-3416 TCGA-18-3421 TCGA-21-1070 TCGA-22-4591 TCGA-22-4595 
       79.46        28.34        43.76       115.59        20.45        24.13 
TCGA-22-5478 TCGA-22-5489 TCGA-39-5019 TCGA-39-5021 TCGA-43-2578 TCGA-46-3768 
        0.79        62.86        44.71        68.58        18.08         9.96 
TCGA-60-2719 TCGA-66-2754 TCGA-66-2758 TCGA-66-2766 TCGA-66-2785 TCGA-85-6560 
       30.61         2.01        20.98         1.02         1.94         0.36 

$`C20ORF26 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-4083 TCGA-18-4086 
       13.02        59.51        24.92         1.61         6.15         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 
       90.51         3.02        27.16        46.88        60.89        34.78 
TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 
       15.55         9.30        31.63        29.85        21.57        10.82 
TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4593 
        7.33         4.31         1.74        14.10        27.02        35.08 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 
       38.17        34.75        13.12        19.30        11.77        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5480 TCGA-22-5482 
       64.90        63.52        14.60        44.22        71.34        11.74 
TCGA-22-5485 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       30.08        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
        3.39        74.07        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       17.88        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        2.79         5.42         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       47.87        35.34         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2759 TCGA-66-2763 
        0.99         0.92         0.99         0.99        25.02         0.99 
TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        2.01         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.79 

  C20ORF26 MUTATED C20ORF26 WILD-TYPE 
              0.36               0.10 
  C20ORF26 MUTATED C20ORF26 WILD-TYPE 
            115.59             173.79 
  C20ORF26 MUTATED C20ORF26 WILD-TYPE 
            22.555             15.580 
[1] "0.4 - 115.6 (22.6)" "0.1 - 173.8 (15.6)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1076 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-21-1077         TCGA-21-1078         TCGA-21-1081 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5784         TCGA-21-5786 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-21-5787         TCGA-22-0944         TCGA-22-1002 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-1011         TCGA-22-1012         TCGA-22-1016 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4595 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-22-4599         TCGA-22-4601         TCGA-22-4604 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4613         TCGA-22-5471 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5480 
"C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5485         TCGA-22-5489 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-33-4586         TCGA-33-6737         TCGA-34-2596 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2608         TCGA-34-5231 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-4133 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED"   "C20ORF26 MUTATED" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5035         TCGA-39-5036 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-43-2578 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-43-6771         TCGA-46-3768         TCGA-46-6025 
"C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-51-4081         TCGA-56-1622         TCGA-56-5897 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-60-2698 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2715         TCGA-60-2719 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-60-2720         TCGA-60-2721         TCGA-60-2722 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2723         TCGA-60-2724         TCGA-60-2725 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2726         TCGA-66-2727         TCGA-66-2734 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2754 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2770         TCGA-66-2771 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2773         TCGA-66-2777         TCGA-66-2778 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2780         TCGA-66-2781         TCGA-66-2782 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2783         TCGA-66-2785         TCGA-66-2786 
"C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" 
        TCGA-66-2787         TCGA-66-2788         TCGA-66-2789 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1076 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-21-1077         TCGA-21-1078         TCGA-21-1081 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5784         TCGA-21-5786 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-21-5787         TCGA-22-0944         TCGA-22-1002 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-1011         TCGA-22-1012         TCGA-22-1016 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4595 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-22-4599         TCGA-22-4601         TCGA-22-4604 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4613         TCGA-22-5471 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5480 
"C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5485         TCGA-22-5489 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-33-4586         TCGA-33-6737         TCGA-34-2596 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2608         TCGA-34-5231 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-4133 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED"   "C20ORF26 MUTATED" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5035         TCGA-39-5036 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-43-2578 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-43-6771         TCGA-46-3768         TCGA-46-6025 
"C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-51-4081         TCGA-56-1622         TCGA-56-5897 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-60-2698 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2715         TCGA-60-2719 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-60-2720         TCGA-60-2721         TCGA-60-2722 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2723         TCGA-60-2724         TCGA-60-2725 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2726         TCGA-66-2727         TCGA-66-2734 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2754 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2770         TCGA-66-2771 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2773         TCGA-66-2777         TCGA-66-2778 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2780         TCGA-66-2781         TCGA-66-2782 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2783         TCGA-66-2785         TCGA-66-2786 
"C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" 
        TCGA-66-2787         TCGA-66-2788         TCGA-66-2789 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1076 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-21-1077         TCGA-21-1078         TCGA-21-1081 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5784         TCGA-21-5786 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-21-5787         TCGA-22-0944         TCGA-22-1002 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-1011         TCGA-22-1012         TCGA-22-1016 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4595 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-22-4599         TCGA-22-4601         TCGA-22-4604 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4613         TCGA-22-5471 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5480 
"C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5485         TCGA-22-5489 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-33-4586         TCGA-33-6737         TCGA-34-2596 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2608         TCGA-34-5231 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-4133 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED"   "C20ORF26 MUTATED" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5035         TCGA-39-5036 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-43-2578 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-43-6771         TCGA-46-3768         TCGA-46-6025 
"C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-51-4081         TCGA-56-1622         TCGA-56-5897 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-60-2698 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2715         TCGA-60-2719 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-60-2720         TCGA-60-2721         TCGA-60-2722 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2723         TCGA-60-2724         TCGA-60-2725 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2726         TCGA-66-2727         TCGA-66-2734 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2754 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2770         TCGA-66-2771 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2773         TCGA-66-2777         TCGA-66-2778 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2780         TCGA-66-2781         TCGA-66-2782 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2783         TCGA-66-2785         TCGA-66-2786 
"C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" 
        TCGA-66-2787         TCGA-66-2788         TCGA-66-2789 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" 
[1] "hr=" "1.6"
D44V2, continuous
D44V3, binary
                    cls
clus                   0   1
  C20ORF26 MUTATED     3  17
  C20ORF26 WILD-TYPE  44 114
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C20ORF26 MUTATED      3   17
  C20ORF26 WILD-TYPE   44  114
        clus
vv       C20ORF26 MUTATED C20ORF26 WILD-TYPE
  FEMALE                3                 44
  MALE                 17                114
D44V4, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  C20ORF26 MUTATED                                       1
  C20ORF26 WILD-TYPE                                     4
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  C20ORF26 MUTATED                                        0
  C20ORF26 WILD-TYPE                                      1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  C20ORF26 MUTATED                                                            19
  C20ORF26 WILD-TYPE                                                         153
D44V5, multiclass
                                                             clus
vv                                                            C20ORF26 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               19
                                                             clus
vv                                                            C20ORF26 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                       1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                153
                    vv
clus                  T1  T2  T3  T4
  C20ORF26 MUTATED     4  11   4   1
  C20ORF26 WILD-TYPE  32 105  10  11
D44V6, multiclass
    clus
vv   C20ORF26 MUTATED C20ORF26 WILD-TYPE
  T1                4                 32
  T2               11                105
  T3                4                 10
  T4                1                 11
                    vv
clus                  N0  N1  N2  N3
  C20ORF26 MUTATED    13   3   4   0
  C20ORF26 WILD-TYPE 104  36  13   5
D44V7, multiclass
    clus
vv   C20ORF26 MUTATED C20ORF26 WILD-TYPE
  N0               13                104
  N1                3                 36
  N2                4                 13
  N3                0                  5
                    vv
clus                  M0  M1  MX
  C20ORF26 MUTATED    19   0   0
  C20ORF26 WILD-TYPE 146   3   6
D44V8, multiclass
    clus
vv   C20ORF26 MUTATED C20ORF26 WILD-TYPE
  M0               19                146
  M1                0                  3
  MX                0                  6
                    vv
clus                  I II III+IV
  C20ORF26 MUTATED    9  3      7
  C20ORF26 WILD-TYPE 88 35     34
D44V9, multiclass
        clus
vv       C20ORF26 MUTATED C20ORF26 WILD-TYPE
  I                     9                 88
  II                    3                 35
  III+IV                7                 34
D44V10, binary
                    cls
clus                   0   1
  C20ORF26 MUTATED     1  19
  C20ORF26 WILD-TYPE   3 155
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C20ORF26 MUTATED      1   19
  C20ORF26 WILD-TYPE    3  155
     clus
vv    C20ORF26 MUTATED C20ORF26 WILD-TYPE
  NO                 1                  3
  YES               19                155
D44V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  C20ORF26 MUTATED                                            13
  C20ORF26 WILD-TYPE                                          81
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  C20ORF26 MUTATED                                        5              2
  C20ORF26 WILD-TYPE                                     38             26
                    vv
clus                 LIFELONG NON-SMOKER
  C20ORF26 MUTATED                     0
  C20ORF26 WILD-TYPE                   8
D44V12, multiclass
                                             clus
vv                                            C20ORF26 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               13
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     5
  CURRENT SMOKER                                             2
  LIFELONG NON-SMOKER                                        0
                                             clus
vv                                            C20ORF26 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 81
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      38
  CURRENT SMOKER                                              26
  LIFELONG NON-SMOKER                                          8
D44V13, continuous
                    vv
clus                  R0  R1  R2  RX
  C20ORF26 MUTATED    19   1   0   0
  C20ORF26 WILD-TYPE 128   1   4  10
D44V14, multiclass
    clus
vv   C20ORF26 MUTATED C20ORF26 WILD-TYPE
  R0               19                128
  R1                1                  1
  R2                0                  4
  RX                0                 10

Clustering(45) Variable = ZEB2 MUTATION ANALYSIS
D45V1, survival
                sevent
clus2             0  1
  ZEB2 MUTATED   10  4
  ZEB2 WILD-TYPE 87 66
  ZEB2 MUTATED ZEB2 WILD-TYPE 
            14            153 
  ZEB2 MUTATED ZEB2 WILD-TYPE 
             4             66 
$`ZEB2 MUTATED`
TCGA-18-3421 TCGA-21-5786 TCGA-22-1016 TCGA-22-5473 TCGA-22-5489 TCGA-33-4583 
       43.76        21.57        27.02        63.52        62.86       141.34 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5031 TCGA-43-6771 TCGA-66-2771 TCGA-66-2778 
        3.39        74.07        27.35         5.42        19.00        19.00 
TCGA-66-2787 TCGA-66-2795 
       40.01         4.01 

$`ZEB2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       29.85        10.82         7.33         4.31         1.74        14.10 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 
       19.30        11.77        31.69        64.90        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5491 TCGA-22-5492 
        0.79        71.34        11.74        30.08        56.32        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       82.98       114.05        97.94        43.10       173.79       103.53 
TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 
       14.07        19.76         2.63        61.61        32.84        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
       22.95         5.52         4.96         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        6.81         0.39        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5035 TCGA-39-5036 
       60.76         1.71        24.33         1.94        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        7.00         6.02         2.79         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 
        1.02         2.01         2.01        23.01         3.02         2.01 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  ZEB2 MUTATED ZEB2 WILD-TYPE 
          3.39           0.10 
  ZEB2 MUTATED ZEB2 WILD-TYPE 
        141.34         173.79 
  ZEB2 MUTATED ZEB2 WILD-TYPE 
        27.185         15.550 
[1] "3.4 - 141.3 (27.2)" "0.1 - 173.8 (15.6)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
  "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
  "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
  "ZEB2 MUTATED"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
  "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
  "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
  "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
  "ZEB2 MUTATED"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
  "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
  "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
  "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
  "ZEB2 MUTATED"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
  "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
[1] "hr=" "2.3"
D45V2, continuous
D45V3, binary
                cls
clus               0   1
  ZEB2 MUTATED     2  13
  ZEB2 WILD-TYPE  45 118
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZEB2 MUTATED      2   13
  ZEB2 WILD-TYPE   45  118
        clus
vv       ZEB2 MUTATED ZEB2 WILD-TYPE
  FEMALE            2             45
  MALE             13            118
D45V4, continuous
                vv
clus             LUNG BASALOID SQUAMOUS CELL CARCINOMA
  ZEB2 MUTATED                                       1
  ZEB2 WILD-TYPE                                     4
                vv
clus             LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  ZEB2 MUTATED                                        0
  ZEB2 WILD-TYPE                                      1
                vv
clus             LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ZEB2 MUTATED                                                            14
  ZEB2 WILD-TYPE                                                         158
D45V5, multiclass
                                                             clus
vv                                                            ZEB2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)           14
                                                             clus
vv                                                            ZEB2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            158
                vv
clus              T1  T2  T3  T4
  ZEB2 MUTATED     4   9   1   1
  ZEB2 WILD-TYPE  32 107  13  11
D45V6, multiclass
    clus
vv   ZEB2 MUTATED ZEB2 WILD-TYPE
  T1            4             32
  T2            9            107
  T3            1             13
  T4            1             11
                vv
clus              N0  N1  N2  N3
  ZEB2 MUTATED    10   3   1   1
  ZEB2 WILD-TYPE 107  36  16   4
D45V7, multiclass
    clus
vv   ZEB2 MUTATED ZEB2 WILD-TYPE
  N0           10            107
  N1            3             36
  N2            1             16
  N3            1              4
                vv
clus              M0  M1  MX
  ZEB2 MUTATED    14   0   1
  ZEB2 WILD-TYPE 151   3   5
D45V8, multiclass
    clus
vv   ZEB2 MUTATED ZEB2 WILD-TYPE
  M0           14            151
  M1            0              3
  MX            1              5
                vv
clus              I II III+IV
  ZEB2 MUTATED    9  3      3
  ZEB2 WILD-TYPE 88 35     38
D45V9, multiclass
        clus
vv       ZEB2 MUTATED ZEB2 WILD-TYPE
  I                 9             88
  II                3             35
  III+IV            3             38
D45V10, binary
                cls
clus               0   1
  ZEB2 MUTATED     0  15
  ZEB2 WILD-TYPE   4 159
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZEB2 MUTATED      0   15
  ZEB2 WILD-TYPE    4  159
     clus
vv    ZEB2 MUTATED ZEB2 WILD-TYPE
  NO             0              4
  YES           15            159
D45V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  ZEB2 MUTATED                                            10
  ZEB2 WILD-TYPE                                          84
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  ZEB2 MUTATED                                        4              1
  ZEB2 WILD-TYPE                                     39             27
                vv
clus             LIFELONG NON-SMOKER
  ZEB2 MUTATED                     0
  ZEB2 WILD-TYPE                   8
D45V12, multiclass
                                             clus
vv                                            ZEB2 MUTATED ZEB2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           10             84
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 4             39
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    0              8
D45V13, continuous
                vv
clus              R0  R1  R2  RX
  ZEB2 MUTATED    13   0   1   1
  ZEB2 WILD-TYPE 134   2   3   9
D45V14, multiclass
    clus
vv   ZEB2 MUTATED ZEB2 WILD-TYPE
  R0           13            134
  R1            0              2
  R2            1              3
  RX            1              9

Clustering(46) Variable = PSG6 MUTATION ANALYSIS
D46V1, survival
                sevent
clus2             0  1
  PSG6 MUTATED    5  4
  PSG6 WILD-TYPE 92 66
  PSG6 MUTATED PSG6 WILD-TYPE 
             9            158 
  PSG6 MUTATED PSG6 WILD-TYPE 
             4             66 
$`PSG6 MUTATED`
TCGA-22-1011 TCGA-33-4566 TCGA-37-5819 TCGA-39-5037 TCGA-46-3768 TCGA-60-2709 
        1.74       173.79         3.39         0.79         9.96        49.48 
TCGA-66-2756 TCGA-66-2771 TCGA-66-2791 
        0.99        19.00         5.03 

$`PSG6 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       97.94        43.10       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        6.02         2.79         5.42         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       10.22        21.70        68.45        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 
       21.07         0.99         2.01         0.92         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       23.01         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        4.04        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  PSG6 MUTATED PSG6 WILD-TYPE 
          0.79           0.10 
  PSG6 MUTATED PSG6 WILD-TYPE 
        173.79         141.34 
  PSG6 MUTATED PSG6 WILD-TYPE 
          5.03          18.46 
[1] "0.8 - 173.8 (5.0)"  "0.1 - 141.3 (18.5)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
[1] "hr=" "1"  
D46V2, continuous
D46V3, binary
                cls
clus               0   1
  PSG6 MUTATED     0   9
  PSG6 WILD-TYPE  47 122
[1] "tbl2"
                cls
clus             [,1] [,2]
  PSG6 MUTATED      0    9
  PSG6 WILD-TYPE   47  122
        clus
vv       PSG6 MUTATED PSG6 WILD-TYPE
  FEMALE            0             47
  MALE              9            122
D46V4, continuous
[1] "Remove cluster labels:" "PSG6 MUTATED"          
clus
  PSG6 MUTATED PSG6 WILD-TYPE 
             1             35 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3410     TCGA-18-3414 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-3419     TCGA-21-5782     TCGA-21-5787     TCGA-22-4591 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-4593     TCGA-22-4595     TCGA-22-4599     TCGA-22-4601 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-4604     TCGA-22-4613     TCGA-22-5472     TCGA-22-5473 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-5492     TCGA-34-5234     TCGA-37-4133     TCGA-37-4135 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-60-2698     TCGA-60-2712     TCGA-60-2715     TCGA-60-2725 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-60-2726     TCGA-70-6722     TCGA-70-6723 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
                vv
clus             LUNG BASALOID SQUAMOUS CELL CARCINOMA
  PSG6 MUTATED                                       0
  PSG6 WILD-TYPE                                     5
                vv
clus             LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  PSG6 MUTATED                                        0
  PSG6 WILD-TYPE                                      1
                vv
clus             LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PSG6 MUTATED                                                             9
  PSG6 WILD-TYPE                                                         163
D46V5, multiclass
                                                             clus
vv                                                            PSG6 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            9
                                                             clus
vv                                                            PSG6 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            163
                vv
clus              T1  T2  T3  T4
  PSG6 MUTATED     1   6   1   1
  PSG6 WILD-TYPE  35 110  13  11
D46V6, multiclass
    clus
vv   PSG6 MUTATED PSG6 WILD-TYPE
  T1            1             35
  T2            6            110
  T3            1             13
  T4            1             11
                vv
clus              N0  N1  N2  N3
  PSG6 MUTATED     4   3   1   1
  PSG6 WILD-TYPE 113  36  16   4
D46V7, multiclass
    clus
vv   PSG6 MUTATED PSG6 WILD-TYPE
  N0            4            113
  N1            3             36
  N2            1             16
  N3            1              4
                vv
clus              M0  M1  MX
  PSG6 MUTATED     8   0   1
  PSG6 WILD-TYPE 157   3   5
D46V8, multiclass
    clus
vv   PSG6 MUTATED PSG6 WILD-TYPE
  M0            8            157
  M1            0              3
  MX            1              5
                vv
clus              I II III+IV
  PSG6 MUTATED    3  2      4
  PSG6 WILD-TYPE 94 36     37
D46V9, multiclass
        clus
vv       PSG6 MUTATED PSG6 WILD-TYPE
  I                 3             94
  II                2             36
  III+IV            4             37
D46V10, binary
                cls
clus               0   1
  PSG6 MUTATED     0   9
  PSG6 WILD-TYPE   4 165
[1] "tbl2"
                cls
clus             [,1] [,2]
  PSG6 MUTATED      0    9
  PSG6 WILD-TYPE    4  165
     clus
vv    PSG6 MUTATED PSG6 WILD-TYPE
  NO             0              4
  YES            9            165
D46V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  PSG6 MUTATED                                             4
  PSG6 WILD-TYPE                                          90
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  PSG6 MUTATED                                        1              4
  PSG6 WILD-TYPE                                     42             24
                vv
clus             LIFELONG NON-SMOKER
  PSG6 MUTATED                     0
  PSG6 WILD-TYPE                   8
D46V12, multiclass
                                             clus
vv                                            PSG6 MUTATED PSG6 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            4             90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 1             42
  CURRENT SMOKER                                         4             24
  LIFELONG NON-SMOKER                                    0              8
D46V13, continuous
                vv
clus              R0  R1  R2  RX
  PSG6 MUTATED     8   1   0   0
  PSG6 WILD-TYPE 139   1   4  10
D46V14, multiclass
    clus
vv   PSG6 MUTATED PSG6 WILD-TYPE
  R0            8            139
  R1            1              1
  R2            0              4
  RX            0             10

Clustering(47) Variable = REG1A MUTATION ANALYSIS
D47V1, survival
                 sevent
clus2              0  1
  REG1A MUTATED    7  3
  REG1A WILD-TYPE 90 67
  REG1A MUTATED REG1A WILD-TYPE 
             10             157 
  REG1A MUTATED REG1A WILD-TYPE 
              3              67 
$`REG1A MUTATED`
TCGA-18-3409 TCGA-21-5786 TCGA-22-4613 TCGA-22-5473 TCGA-22-5478 TCGA-37-3783 
       79.46        21.57        11.77        63.52         0.79         3.95 
TCGA-60-2724 TCGA-66-2744 TCGA-66-2766 TCGA-66-2777 
        1.22         0.99         1.02         2.01 

$`REG1A WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       29.85        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 
       13.12        19.30        31.69        64.90        14.60        44.22 
TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       71.34        11.74        30.08        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       82.98       114.05        97.94        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 
      141.34        14.07        19.76         2.63        61.61        32.84 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3789 TCGA-37-4133 
       14.07        22.95         5.52         4.96         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        6.81         0.39         3.39        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
       27.35        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
       22.78        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        0.99         2.01         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        3.02        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
        1.94        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 
TCGA-85-6561 
        0.79 

  REG1A MUTATED REG1A WILD-TYPE 
           0.79            0.10 
  REG1A MUTATED REG1A WILD-TYPE 
          79.46          173.79 
  REG1A MUTATED REG1A WILD-TYPE 
           2.98           18.84 
[1] "0.8 - 79.5 (3.0)"   "0.1 - 173.8 (18.8)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" "REG1A WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "REG1A MUTATED" "REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" "REG1A WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"REG1A WILD-TYPE"   "REG1A MUTATED" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" "REG1A WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
  "REG1A MUTATED" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" "REG1A WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "REG1A MUTATED" "REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" "REG1A WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"REG1A WILD-TYPE"   "REG1A MUTATED" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" "REG1A WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
  "REG1A MUTATED" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" "REG1A WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "REG1A MUTATED" "REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" "REG1A WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"REG1A WILD-TYPE"   "REG1A MUTATED" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" "REG1A WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
  "REG1A MUTATED" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
[1] "hr=" "1"  
D47V2, continuous
D47V3, binary
                 cls
clus                0   1
  REG1A MUTATED     1  10
  REG1A WILD-TYPE  46 121
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG1A MUTATED      1   10
  REG1A WILD-TYPE   46  121
        clus
vv       REG1A MUTATED REG1A WILD-TYPE
  FEMALE             1              46
  MALE              10             121
D47V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  REG1A MUTATED                                       1
  REG1A WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  REG1A MUTATED                                        0
  REG1A WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  REG1A MUTATED                                                            10
  REG1A WILD-TYPE                                                         162
D47V5, multiclass
                                                             clus
vv                                                            REG1A MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            10
                                                             clus
vv                                                            REG1A WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             162
                 vv
clus               T1  T2  T3  T4
  REG1A MUTATED     2   5   4   0
  REG1A WILD-TYPE  34 111  10  12
D47V6, multiclass
    clus
vv   REG1A MUTATED REG1A WILD-TYPE
  T1             2              34
  T2             5             111
  T3             4              10
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  REG1A MUTATED     6   3   2   0
  REG1A WILD-TYPE 111  36  15   5
D47V7, multiclass
    clus
vv   REG1A MUTATED REG1A WILD-TYPE
  N0             6             111
  N1             3              36
  N2             2              15
  N3             0               5
                 vv
clus               M0  M1  MX
  REG1A MUTATED    11   0   0
  REG1A WILD-TYPE 154   3   6
D47V8, multiclass
    clus
vv   REG1A MUTATED REG1A WILD-TYPE
  M0            11             154
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  REG1A MUTATED    5  1      4
  REG1A WILD-TYPE 92 37     37
D47V9, multiclass
        clus
vv       REG1A MUTATED REG1A WILD-TYPE
  I                  5              92
  II                 1              37
  III+IV             4              37
D47V10, binary
                 cls
clus                0   1
  REG1A MUTATED     0  11
  REG1A WILD-TYPE   4 163
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG1A MUTATED      0   11
  REG1A WILD-TYPE    4  163
     clus
vv    REG1A MUTATED REG1A WILD-TYPE
  NO              0               4
  YES            11             163
D47V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  REG1A MUTATED                                             5
  REG1A WILD-TYPE                                          89
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  REG1A MUTATED                                        3              1
  REG1A WILD-TYPE                                     40             27
                 vv
clus              LIFELONG NON-SMOKER
  REG1A MUTATED                     1
  REG1A WILD-TYPE                   7
D47V12, multiclass
                                             clus
vv                                            REG1A MUTATED REG1A WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              40
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     1               7
D47V13, continuous
                 vv
clus               R0  R1  R2  RX
  REG1A MUTATED    10   0   0   1
  REG1A WILD-TYPE 137   2   4   9
D47V14, multiclass
    clus
vv   REG1A MUTATED REG1A WILD-TYPE
  R0            10             137
  R1             0               2
  R2             0               4
  RX             1               9

Clustering(48) Variable = CLSTN2 MUTATION ANALYSIS
D48V1, survival
                  sevent
clus2               0  1
  CLSTN2 MUTATED    8  8
  CLSTN2 WILD-TYPE 89 62
  CLSTN2 MUTATED CLSTN2 WILD-TYPE 
              16              151 
  CLSTN2 MUTATED CLSTN2 WILD-TYPE 
               8               62 
$`CLSTN2 MUTATED`
TCGA-18-3414 TCGA-22-5473 TCGA-33-4583 TCGA-34-2600 TCGA-34-5236 TCGA-37-5819 
       13.02        63.52       141.34        61.61         9.04         3.39 
TCGA-39-5039 TCGA-43-3394 TCGA-43-6771 TCGA-51-4080 TCGA-60-2712 TCGA-60-2724 
       17.88        11.57         5.42         0.39         9.01         1.22 
TCGA-66-2754 TCGA-66-2757 TCGA-66-2786 TCGA-66-2795 
        2.01         0.99        25.97         4.01 

$`CLSTN2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
       43.10       173.79       103.53        14.07        19.76         2.63 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 TCGA-34-5240 
       32.84        50.24        51.78        32.68        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         4.96         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        7.82         6.81         0.39        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-43-2578 TCGA-43-3920 
       27.35        15.58        35.64         0.79        18.08        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-46-3768 TCGA-46-6025 
        8.48         7.00         6.02         2.79         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.59         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       29.19        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       24.10        22.78        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2759 
       21.07         0.99         0.92         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       12.00        24.95         1.94        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 TCGA-85-6560 
        5.03        30.02        10.06        54.08        49.05         0.36 
TCGA-85-6561 
        0.79 

  CLSTN2 MUTATED CLSTN2 WILD-TYPE 
            0.39             0.10 
  CLSTN2 MUTATED CLSTN2 WILD-TYPE 
          141.34           173.79 
  CLSTN2 MUTATED CLSTN2 WILD-TYPE 
           9.025           19.000 
[1] "0.4 - 141.3 (9.0)"  "0.1 - 173.8 (19.0)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
  "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
  "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
  "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
  "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
  "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
  "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
[1] "hr=" "1.6"
D48V2, continuous
D48V3, binary
                  cls
clus                 0   1
  CLSTN2 MUTATED     4  13
  CLSTN2 WILD-TYPE  43 118
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CLSTN2 MUTATED      4   13
  CLSTN2 WILD-TYPE   43  118
        clus
vv       CLSTN2 MUTATED CLSTN2 WILD-TYPE
  FEMALE              4               43
  MALE               13              118
D48V4, continuous
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  CLSTN2 MUTATED                                       1
  CLSTN2 WILD-TYPE                                     4
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  CLSTN2 MUTATED                                        0
  CLSTN2 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CLSTN2 MUTATED                                                            16
  CLSTN2 WILD-TYPE                                                         156
D48V5, multiclass
                                                             clus
vv                                                            CLSTN2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             16
                                                             clus
vv                                                            CLSTN2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              156
                  vv
clus                T1  T2  T3  T4
  CLSTN2 MUTATED     4   6   3   4
  CLSTN2 WILD-TYPE  32 110  11   8
D48V6, multiclass
    clus
vv   CLSTN2 MUTATED CLSTN2 WILD-TYPE
  T1              4               32
  T2              6              110
  T3              3               11
  T4              4                8
                  vv
clus                N0  N1  N2  N3
  CLSTN2 MUTATED    10   5   2   0
  CLSTN2 WILD-TYPE 107  34  15   5
D48V7, multiclass
    clus
vv   CLSTN2 MUTATED CLSTN2 WILD-TYPE
  N0             10              107
  N1              5               34
  N2              2               15
  N3              0                5
                  vv
clus                M0  M1  MX
  CLSTN2 MUTATED    14   1   1
  CLSTN2 WILD-TYPE 151   2   5
D48V8, multiclass
    clus
vv   CLSTN2 MUTATED CLSTN2 WILD-TYPE
  M0             14              151
  M1              1                2
  MX              1                5
                  vv
clus                I II III+IV
  CLSTN2 MUTATED    7  4      6
  CLSTN2 WILD-TYPE 90 34     35
D48V9, multiclass
        clus
vv       CLSTN2 MUTATED CLSTN2 WILD-TYPE
  I                   7               90
  II                  4               34
  III+IV              6               35
D48V10, binary
                  cls
clus                 0   1
  CLSTN2 MUTATED     0  17
  CLSTN2 WILD-TYPE   4 157
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CLSTN2 MUTATED      0   17
  CLSTN2 WILD-TYPE    4  157
     clus
vv    CLSTN2 MUTATED CLSTN2 WILD-TYPE
  NO               0                4
  YES             17              157
D48V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  CLSTN2 MUTATED                                            10
  CLSTN2 WILD-TYPE                                          84
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  CLSTN2 MUTATED                                        5              1
  CLSTN2 WILD-TYPE                                     38             27
                  vv
clus               LIFELONG NON-SMOKER
  CLSTN2 MUTATED                     0
  CLSTN2 WILD-TYPE                   8
D48V12, multiclass
                                             clus
vv                                            CLSTN2 MUTATED CLSTN2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             10               84
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   5               38
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0                8
D48V13, continuous
                  vv
clus                R0  R1  R2  RX
  CLSTN2 MUTATED    14   1   0   1
  CLSTN2 WILD-TYPE 133   1   4   9
D48V14, multiclass
    clus
vv   CLSTN2 MUTATED CLSTN2 WILD-TYPE
  R0             14              133
  R1              1                1
  R2              0                4
  RX              1                9

Clustering(49) Variable = MTNR1B MUTATION ANALYSIS
D49V1, survival
                  sevent
clus2               0  1
  MTNR1B MUTATED    6  3
  MTNR1B WILD-TYPE 91 67
  MTNR1B MUTATED MTNR1B WILD-TYPE 
               9              158 
  MTNR1B MUTATED MTNR1B WILD-TYPE 
               3               67 
$`MTNR1B MUTATED`
TCGA-22-5471 TCGA-22-5489 TCGA-60-2698 TCGA-60-2707 TCGA-60-2711 TCGA-60-2715 
       31.69        62.86        10.22        21.70        29.19        35.34 
TCGA-60-2724 TCGA-66-2756 TCGA-66-2787 
        1.22         0.99        40.01 

$`MTNR1B WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5472 
       38.17        34.75        13.12        19.30        11.77        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       30.08        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
        8.48         7.00         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 
        0.95         0.59         0.39         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        0.10         2.04         1.02        68.45        49.48        55.40 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
        9.01        47.87        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
       22.78        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        0.99         2.01         0.92         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 
       12.00        24.95         1.94        25.97        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  MTNR1B MUTATED MTNR1B WILD-TYPE 
            0.99             0.10 
  MTNR1B MUTATED MTNR1B WILD-TYPE 
           62.86           173.79 
  MTNR1B MUTATED MTNR1B WILD-TYPE 
           29.19            16.78 
[1] "1.0 - 62.9 (29.2)"  "0.1 - 173.8 (16.8)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"MTNR1B WILD-TYPE"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"MTNR1B WILD-TYPE"   "MTNR1B MUTATED"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"MTNR1B WILD-TYPE"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE"   "MTNR1B MUTATED" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
  "MTNR1B MUTATED" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "MTNR1B MUTATED" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"MTNR1B WILD-TYPE"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"MTNR1B WILD-TYPE"   "MTNR1B MUTATED"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"MTNR1B WILD-TYPE"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE"   "MTNR1B MUTATED" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
  "MTNR1B MUTATED" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "MTNR1B MUTATED" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"MTNR1B WILD-TYPE"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"MTNR1B WILD-TYPE"   "MTNR1B MUTATED"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"MTNR1B WILD-TYPE"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE"   "MTNR1B MUTATED" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
  "MTNR1B MUTATED" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "MTNR1B MUTATED" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
[1] "hr=" "1.3"
D49V2, continuous
D49V3, binary
                  cls
clus                 0   1
  MTNR1B MUTATED     1   9
  MTNR1B WILD-TYPE  46 122
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MTNR1B MUTATED      1    9
  MTNR1B WILD-TYPE   46  122
        clus
vv       MTNR1B MUTATED MTNR1B WILD-TYPE
  FEMALE              1               46
  MALE                9              122
D49V4, continuous
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  MTNR1B MUTATED                                       0
  MTNR1B WILD-TYPE                                     5
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  MTNR1B MUTATED                                        0
  MTNR1B WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  MTNR1B MUTATED                                                            10
  MTNR1B WILD-TYPE                                                         162
D49V5, multiclass
                                                             clus
vv                                                            MTNR1B MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             10
                                                             clus
vv                                                            MTNR1B WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              162
                  vv
clus                T1  T2  T3  T4
  MTNR1B MUTATED     3   5   1   1
  MTNR1B WILD-TYPE  33 111  13  11
D49V6, multiclass
    clus
vv   MTNR1B MUTATED MTNR1B WILD-TYPE
  T1              3               33
  T2              5              111
  T3              1               13
  T4              1               11
                  vv
clus                N0  N1  N2  N3
  MTNR1B MUTATED     7   3   0   0
  MTNR1B WILD-TYPE 110  36  17   5
D49V7, multiclass
    clus
vv   MTNR1B MUTATED MTNR1B WILD-TYPE
  N0              7              110
  N1              3               36
  N2              0               17
  N3              0                5
                  vv
clus                M0  M1  MX
  MTNR1B MUTATED    10   0   0
  MTNR1B WILD-TYPE 155   3   6
D49V8, multiclass
    clus
vv   MTNR1B MUTATED MTNR1B WILD-TYPE
  M0             10              155
  M1              0                3
  MX              0                6
                  vv
clus                I II III+IV
  MTNR1B MUTATED    6  2      2
  MTNR1B WILD-TYPE 91 36     39
D49V9, multiclass
        clus
vv       MTNR1B MUTATED MTNR1B WILD-TYPE
  I                   6               91
  II                  2               36
  III+IV              2               39
D49V10, binary
                  cls
clus                 0   1
  MTNR1B MUTATED     1   9
  MTNR1B WILD-TYPE   3 165
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MTNR1B MUTATED      1    9
  MTNR1B WILD-TYPE    3  165
     clus
vv    MTNR1B MUTATED MTNR1B WILD-TYPE
  NO               1                3
  YES              9              165
D49V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  MTNR1B MUTATED                                             9
  MTNR1B WILD-TYPE                                          85
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  MTNR1B MUTATED                                        1              0
  MTNR1B WILD-TYPE                                     42             28
                  vv
clus               LIFELONG NON-SMOKER
  MTNR1B MUTATED                     0
  MTNR1B WILD-TYPE                   8
D49V12, multiclass
                                             clus
vv                                            MTNR1B MUTATED MTNR1B WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              9               85
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               42
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      0                8
D49V13, continuous
                  vv
clus                R0  R1  R2  RX
  MTNR1B MUTATED     6   0   1   3
  MTNR1B WILD-TYPE 141   2   3   7
D49V14, multiclass
    clus
vv   MTNR1B MUTATED MTNR1B WILD-TYPE
  R0              6              141
  R1              0                2
  R2              1                3
  RX              3                7

Clustering(50) Variable = RB1 MUTATION ANALYSIS
D50V1, survival
               sevent
clus2            0  1
  RB1 MUTATED    7  5
  RB1 WILD-TYPE 90 65
  RB1 MUTATED RB1 WILD-TYPE 
           12           155 
  RB1 MUTATED RB1 WILD-TYPE 
            5            65 
$`RB1 MUTATED`
TCGA-18-4086 TCGA-22-4601 TCGA-22-4607 TCGA-33-4533 TCGA-34-5240 TCGA-39-5021 
        2.79        34.75        19.30       114.05         7.73        68.58 
TCGA-39-5031 TCGA-43-2578 TCGA-43-6143 TCGA-56-1622 TCGA-66-2754 TCGA-66-2783 
       27.35        18.08         7.00        28.93         2.01        24.95 

$`RB1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
       43.76         6.15        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4604 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       13.12        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       56.32        16.60        82.98        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         4.96         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-3394 TCGA-43-3920 
       15.58        35.64         0.79        17.88        11.57        18.84 
TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        8.48         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-5897 TCGA-56-6545 
        0.59         0.39         0.39         2.07         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2755 TCGA-66-2756 
       16.96        43.10        21.07         0.99         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 
       19.00        12.03         3.98        12.00         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  RB1 MUTATED RB1 WILD-TYPE 
         2.01          0.10 
  RB1 MUTATED RB1 WILD-TYPE 
       114.05        173.79 
  RB1 MUTATED RB1 WILD-TYPE 
       22.125        16.600 
[1] "2.0 - 114.0 (22.1)" "0.1 - 173.8 (16.6)"
   TCGA-18-3406    TCGA-18-3407    TCGA-18-3408    TCGA-18-3409    TCGA-18-3410 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-18-3411    TCGA-18-3412    TCGA-18-3414    TCGA-18-3415    TCGA-18-3416 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-18-3417    TCGA-18-3419    TCGA-18-3421    TCGA-18-4083    TCGA-18-4086 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-18-4721    TCGA-18-5592    TCGA-18-5595    TCGA-21-1070    TCGA-21-1071 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-21-1076    TCGA-21-1077    TCGA-21-1078    TCGA-21-1081    TCGA-21-5782 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-21-5784    TCGA-21-5786    TCGA-21-5787    TCGA-22-0944    TCGA-22-1002 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-1011    TCGA-22-1012    TCGA-22-1016    TCGA-22-4591    TCGA-22-4593 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-4595    TCGA-22-4599    TCGA-22-4601    TCGA-22-4604    TCGA-22-4607 
"RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-22-4613    TCGA-22-5471    TCGA-22-5472    TCGA-22-5473    TCGA-22-5474 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-5477    TCGA-22-5478    TCGA-22-5480    TCGA-22-5482    TCGA-22-5485 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-5489    TCGA-22-5491    TCGA-22-5492    TCGA-33-4532    TCGA-33-4533 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-33-4538    TCGA-33-4547    TCGA-33-4566    TCGA-33-4582    TCGA-33-4583 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-33-4586    TCGA-33-6737    TCGA-34-2596    TCGA-34-2600    TCGA-34-2608 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-34-5231    TCGA-34-5232    TCGA-34-5234    TCGA-34-5236    TCGA-34-5239 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-34-5240    TCGA-34-5241    TCGA-34-5927    TCGA-34-5928    TCGA-34-5929 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-37-3783    TCGA-37-3789    TCGA-37-4133    TCGA-37-4135    TCGA-37-4141 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-37-5819    TCGA-39-5016    TCGA-39-5019    TCGA-39-5021    TCGA-39-5022 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-39-5024    TCGA-39-5027    TCGA-39-5028    TCGA-39-5029    TCGA-39-5030 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-39-5031    TCGA-39-5035    TCGA-39-5036    TCGA-39-5037    TCGA-39-5039 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-43-2578    TCGA-43-3394    TCGA-43-3920    TCGA-43-5668    TCGA-43-6143 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-43-6647    TCGA-43-6770    TCGA-43-6771    TCGA-46-3768    TCGA-46-6025 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-46-6026    TCGA-51-4079    TCGA-51-4080    TCGA-51-4081    TCGA-56-1622 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-56-5897    TCGA-56-6545    TCGA-56-6546    TCGA-60-2698    TCGA-60-2707 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-60-2708    TCGA-60-2709    TCGA-60-2710    TCGA-60-2711    TCGA-60-2712 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-60-2713    TCGA-60-2715    TCGA-60-2719    TCGA-60-2720    TCGA-60-2721 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-60-2722    TCGA-60-2723    TCGA-60-2724    TCGA-60-2725    TCGA-60-2726 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2727    TCGA-66-2734    TCGA-66-2742    TCGA-66-2744    TCGA-66-2754 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-66-2755    TCGA-66-2756    TCGA-66-2757    TCGA-66-2758    TCGA-66-2759 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2763    TCGA-66-2765    TCGA-66-2766    TCGA-66-2767    TCGA-66-2768 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2770    TCGA-66-2771    TCGA-66-2773    TCGA-66-2777    TCGA-66-2778 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2780    TCGA-66-2781    TCGA-66-2782    TCGA-66-2783    TCGA-66-2785 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-66-2786    TCGA-66-2787    TCGA-66-2788    TCGA-66-2789    TCGA-66-2791 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2792    TCGA-66-2793    TCGA-66-2794    TCGA-66-2795    TCGA-66-2800 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-85-6560    TCGA-85-6561 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-18-3406    TCGA-18-3407    TCGA-18-3408    TCGA-18-3409    TCGA-18-3410 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-18-3411    TCGA-18-3412    TCGA-18-3414    TCGA-18-3415    TCGA-18-3416 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-18-3417    TCGA-18-3419    TCGA-18-3421    TCGA-18-4083    TCGA-18-4086 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-18-4721    TCGA-18-5592    TCGA-18-5595    TCGA-21-1070    TCGA-21-1071 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-21-1076    TCGA-21-1077    TCGA-21-1078    TCGA-21-1081    TCGA-21-5782 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-21-5784    TCGA-21-5786    TCGA-21-5787    TCGA-22-0944    TCGA-22-1002 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-1011    TCGA-22-1012    TCGA-22-1016    TCGA-22-4591    TCGA-22-4593 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-4595    TCGA-22-4599    TCGA-22-4601    TCGA-22-4604    TCGA-22-4607 
"RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-22-4613    TCGA-22-5471    TCGA-22-5472    TCGA-22-5473    TCGA-22-5474 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-5477    TCGA-22-5478    TCGA-22-5480    TCGA-22-5482    TCGA-22-5485 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-5489    TCGA-22-5491    TCGA-22-5492    TCGA-33-4532    TCGA-33-4533 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-33-4538    TCGA-33-4547    TCGA-33-4566    TCGA-33-4582    TCGA-33-4583 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-33-4586    TCGA-33-6737    TCGA-34-2596    TCGA-34-2600    TCGA-34-2608 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-34-5231    TCGA-34-5232    TCGA-34-5234    TCGA-34-5236    TCGA-34-5239 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-34-5240    TCGA-34-5241    TCGA-34-5927    TCGA-34-5928    TCGA-34-5929 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-37-3783    TCGA-37-3789    TCGA-37-4133    TCGA-37-4135    TCGA-37-4141 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-37-5819    TCGA-39-5016    TCGA-39-5019    TCGA-39-5021    TCGA-39-5022 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-39-5024    TCGA-39-5027    TCGA-39-5028    TCGA-39-5029    TCGA-39-5030 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-39-5031    TCGA-39-5035    TCGA-39-5036    TCGA-39-5037    TCGA-39-5039 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-43-2578    TCGA-43-3394    TCGA-43-3920    TCGA-43-5668    TCGA-43-6143 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-43-6647    TCGA-43-6770    TCGA-43-6771    TCGA-46-3768    TCGA-46-6025 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-46-6026    TCGA-51-4079    TCGA-51-4080    TCGA-51-4081    TCGA-56-1622 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-56-5897    TCGA-56-6545    TCGA-56-6546    TCGA-60-2698    TCGA-60-2707 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-60-2708    TCGA-60-2709    TCGA-60-2710    TCGA-60-2711    TCGA-60-2712 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-60-2713    TCGA-60-2715    TCGA-60-2719    TCGA-60-2720    TCGA-60-2721 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-60-2722    TCGA-60-2723    TCGA-60-2724    TCGA-60-2725    TCGA-60-2726 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2727    TCGA-66-2734    TCGA-66-2742    TCGA-66-2744    TCGA-66-2754 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-66-2755    TCGA-66-2756    TCGA-66-2757    TCGA-66-2758    TCGA-66-2759 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2763    TCGA-66-2765    TCGA-66-2766    TCGA-66-2767    TCGA-66-2768 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2770    TCGA-66-2771    TCGA-66-2773    TCGA-66-2777    TCGA-66-2778 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2780    TCGA-66-2781    TCGA-66-2782    TCGA-66-2783    TCGA-66-2785 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-66-2786    TCGA-66-2787    TCGA-66-2788    TCGA-66-2789    TCGA-66-2791 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2792    TCGA-66-2793    TCGA-66-2794    TCGA-66-2795    TCGA-66-2800 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-85-6560    TCGA-85-6561 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-18-3406    TCGA-18-3407    TCGA-18-3408    TCGA-18-3409    TCGA-18-3410 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-18-3411    TCGA-18-3412    TCGA-18-3414    TCGA-18-3415    TCGA-18-3416 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-18-3417    TCGA-18-3419    TCGA-18-3421    TCGA-18-4083    TCGA-18-4086 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-18-4721    TCGA-18-5592    TCGA-18-5595    TCGA-21-1070    TCGA-21-1071 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-21-1076    TCGA-21-1077    TCGA-21-1078    TCGA-21-1081    TCGA-21-5782 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-21-5784    TCGA-21-5786    TCGA-21-5787    TCGA-22-0944    TCGA-22-1002 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-1011    TCGA-22-1012    TCGA-22-1016    TCGA-22-4591    TCGA-22-4593 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-4595    TCGA-22-4599    TCGA-22-4601    TCGA-22-4604    TCGA-22-4607 
"RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-22-4613    TCGA-22-5471    TCGA-22-5472    TCGA-22-5473    TCGA-22-5474 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-5477    TCGA-22-5478    TCGA-22-5480    TCGA-22-5482    TCGA-22-5485 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-5489    TCGA-22-5491    TCGA-22-5492    TCGA-33-4532    TCGA-33-4533 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-33-4538    TCGA-33-4547    TCGA-33-4566    TCGA-33-4582    TCGA-33-4583 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-33-4586    TCGA-33-6737    TCGA-34-2596    TCGA-34-2600    TCGA-34-2608 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-34-5231    TCGA-34-5232    TCGA-34-5234    TCGA-34-5236    TCGA-34-5239 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-34-5240    TCGA-34-5241    TCGA-34-5927    TCGA-34-5928    TCGA-34-5929 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-37-3783    TCGA-37-3789    TCGA-37-4133    TCGA-37-4135    TCGA-37-4141 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-37-5819    TCGA-39-5016    TCGA-39-5019    TCGA-39-5021    TCGA-39-5022 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-39-5024    TCGA-39-5027    TCGA-39-5028    TCGA-39-5029    TCGA-39-5030 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-39-5031    TCGA-39-5035    TCGA-39-5036    TCGA-39-5037    TCGA-39-5039 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-43-2578    TCGA-43-3394    TCGA-43-3920    TCGA-43-5668    TCGA-43-6143 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-43-6647    TCGA-43-6770    TCGA-43-6771    TCGA-46-3768    TCGA-46-6025 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-46-6026    TCGA-51-4079    TCGA-51-4080    TCGA-51-4081    TCGA-56-1622 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-56-5897    TCGA-56-6545    TCGA-56-6546    TCGA-60-2698    TCGA-60-2707 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-60-2708    TCGA-60-2709    TCGA-60-2710    TCGA-60-2711    TCGA-60-2712 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-60-2713    TCGA-60-2715    TCGA-60-2719    TCGA-60-2720    TCGA-60-2721 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-60-2722    TCGA-60-2723    TCGA-60-2724    TCGA-60-2725    TCGA-60-2726 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2727    TCGA-66-2734    TCGA-66-2742    TCGA-66-2744    TCGA-66-2754 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-66-2755    TCGA-66-2756    TCGA-66-2757    TCGA-66-2758    TCGA-66-2759 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2763    TCGA-66-2765    TCGA-66-2766    TCGA-66-2767    TCGA-66-2768 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2770    TCGA-66-2771    TCGA-66-2773    TCGA-66-2777    TCGA-66-2778 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2780    TCGA-66-2781    TCGA-66-2782    TCGA-66-2783    TCGA-66-2785 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-66-2786    TCGA-66-2787    TCGA-66-2788    TCGA-66-2789    TCGA-66-2791 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2792    TCGA-66-2793    TCGA-66-2794    TCGA-66-2795    TCGA-66-2800 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-85-6560    TCGA-85-6561 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" 
[1] "hr=" "1.2"
D50V2, continuous
D50V3, binary
               cls
clus              0   1
  RB1 MUTATED     5   7
  RB1 WILD-TYPE  42 124
[1] "tbl2"
               cls
clus            [,1] [,2]
  RB1 MUTATED      5    7
  RB1 WILD-TYPE   42  124
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  FEMALE           5            42
  MALE             7           124
D50V4, continuous
[1] "Remove cluster labels:" "RB1 MUTATED"           
clus
  RB1 MUTATED RB1 WILD-TYPE 
            1            35 
   TCGA-18-3406    TCGA-18-3407    TCGA-18-3410    TCGA-18-3414    TCGA-18-3419 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-21-5782    TCGA-21-5787    TCGA-22-4591    TCGA-22-4593    TCGA-22-4595 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-4599    TCGA-22-4604    TCGA-22-4613    TCGA-22-5472    TCGA-22-5473 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-5474    TCGA-22-5477    TCGA-22-5478    TCGA-22-5480    TCGA-22-5482 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-5485    TCGA-22-5489    TCGA-22-5491    TCGA-22-5492    TCGA-34-5234 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-37-4133    TCGA-37-4135    TCGA-37-5819    TCGA-60-2698    TCGA-60-2712 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-60-2715    TCGA-60-2725    TCGA-60-2726    TCGA-70-6722    TCGA-70-6723 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
               vv
clus            LUNG BASALOID SQUAMOUS CELL CARCINOMA
  RB1 MUTATED                                       2
  RB1 WILD-TYPE                                     3
               vv
clus            LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  RB1 MUTATED                                        0
  RB1 WILD-TYPE                                      1
               vv
clus            LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  RB1 MUTATED                                                            10
  RB1 WILD-TYPE                                                         162
D50V5, multiclass
                                                             clus
vv                                                            RB1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                 2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)          10
                                                             clus
vv                                                            RB1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)           162
               vv
clus             T1  T2  T3  T4
  RB1 MUTATED     2   9   0   1
  RB1 WILD-TYPE  34 107  14  11
D50V6, multiclass
    clus
vv   RB1 MUTATED RB1 WILD-TYPE
  T1           2            34
  T2           9           107
  T3           0            14
  T4           1            11
               vv
clus             N0  N1  N2  N3
  RB1 MUTATED     9   1   1   1
  RB1 WILD-TYPE 108  38  16   4
D50V7, multiclass
    clus
vv   RB1 MUTATED RB1 WILD-TYPE
  N0           9           108
  N1           1            38
  N2           1            16
  N3           1             4
               vv
clus             M0  M1  MX
  RB1 MUTATED    12   0   0
  RB1 WILD-TYPE 153   3   6
D50V8, multiclass
    clus
vv   RB1 MUTATED RB1 WILD-TYPE
  M0          12           153
  M1           0             3
  MX           0             6
               vv
clus             I II III+IV
  RB1 MUTATED    8  1      3
  RB1 WILD-TYPE 89 37     38
D50V9, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  I                8            89
  II               1            37
  III+IV           3            38
D50V10, binary
               cls
clus              0   1
  RB1 MUTATED     0  12
  RB1 WILD-TYPE   4 162
[1] "tbl2"
               cls
clus            [,1] [,2]
  RB1 MUTATED      0   12
  RB1 WILD-TYPE    4  162
     clus
vv    RB1 MUTATED RB1 WILD-TYPE
  NO            0             4
  YES          12           162
D50V11, continuous
               vv
clus            CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  RB1 MUTATED                                             8
  RB1 WILD-TYPE                                          86
               vv
clus            CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  RB1 MUTATED                                        2              2
  RB1 WILD-TYPE                                     41             26
               vv
clus            LIFELONG NON-SMOKER
  RB1 MUTATED                     0
  RB1 WILD-TYPE                   8
D50V12, multiclass
                                             clus
vv                                            RB1 MUTATED RB1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           8            86
  CURRENT REFORMED SMOKER FOR > 15 YEARS                2            41
  CURRENT SMOKER                                        2            26
  LIFELONG NON-SMOKER                                   0             8
D50V13, continuous
               vv
clus             R0  R1  R2  RX
  RB1 MUTATED     9   0   1   1
  RB1 WILD-TYPE 138   2   3   9
D50V14, multiclass
    clus
vv   RB1 MUTATED RB1 WILD-TYPE
  R0           9           138
  R1           0             2
  R2           1             3
  RX           1             9

Clustering(51) Variable = ZNF567 MUTATION ANALYSIS
D51V1, survival
                  sevent
clus2               0  1
  ZNF567 MUTATED    1  2
  ZNF567 WILD-TYPE 96 68
  ZNF567 MUTATED ZNF567 WILD-TYPE 
               3              164 
  ZNF567 MUTATED ZNF567 WILD-TYPE 
               2               68 
$`ZNF567 MUTATED`
TCGA-22-4591 TCGA-39-5024 TCGA-39-5030 
       20.45        70.03         1.94 

$`ZNF567 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
        1.74        14.10        27.02        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 
        5.52         4.96         3.95         0.43         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        0.39         3.39        74.07        44.71        68.58        55.17 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
       60.76         1.71        24.33        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  ZNF567 MUTATED ZNF567 WILD-TYPE 
            1.94             0.10 
  ZNF567 MUTATED ZNF567 WILD-TYPE 
           70.03           173.79 
  ZNF567 MUTATED ZNF567 WILD-TYPE 
           20.45            17.42 
[1] "1.9 - 70.0 (20.4)"  "0.1 - 173.8 (17.4)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"ZNF567 WILD-TYPE"   "ZNF567 MUTATED" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"ZNF567 WILD-TYPE"   "ZNF567 MUTATED" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"ZNF567 WILD-TYPE"   "ZNF567 MUTATED" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"ZNF567 WILD-TYPE"   "ZNF567 MUTATED" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"ZNF567 WILD-TYPE"   "ZNF567 MUTATED" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"ZNF567 WILD-TYPE"   "ZNF567 MUTATED" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"ZNF567 WILD-TYPE"   "ZNF567 MUTATED" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"ZNF567 WILD-TYPE"   "ZNF567 MUTATED" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"ZNF567 WILD-TYPE"   "ZNF567 MUTATED" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
[1] "hr=" "1.3"
D51V2, continuous
D51V3, binary
                  cls
clus                 0   1
  ZNF567 MUTATED     2   1
  ZNF567 WILD-TYPE  45 130
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF567 MUTATED      2    1
  ZNF567 WILD-TYPE   45  130
        clus
vv       ZNF567 MUTATED ZNF567 WILD-TYPE
  FEMALE              2               45
  MALE                1              130
D51V4, continuous
[1] "Remove cluster labels:" "ZNF567 MUTATED"        
clus
  ZNF567 MUTATED ZNF567 WILD-TYPE 
               1               35 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4593 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-4595       TCGA-22-4599       TCGA-22-4601       TCGA-22-4604 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5472       TCGA-22-5473       TCGA-22-5474 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5482 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-34-5234       TCGA-37-4133       TCGA-37-4135       TCGA-37-5819 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2698       TCGA-60-2712       TCGA-60-2715       TCGA-60-2725 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2726       TCGA-70-6722       TCGA-70-6723 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  ZNF567 MUTATED                                       0
  ZNF567 WILD-TYPE                                     5
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  ZNF567 MUTATED                                        0
  ZNF567 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ZNF567 MUTATED                                                             3
  ZNF567 WILD-TYPE                                                         169
D51V5, multiclass
                                                             clus
vv                                                            ZNF567 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              3
                                                             clus
vv                                                            ZNF567 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              169
                  vv
clus                T1  T2  T3  T4
  ZNF567 MUTATED     0   2   1   0
  ZNF567 WILD-TYPE  36 114  13  12
D51V6, multiclass
    clus
vv   ZNF567 MUTATED ZNF567 WILD-TYPE
  T1              0               36
  T2              2              114
  T3              1               13
  T4              0               12
                  vv
clus                N0  N1  N2  N3
  ZNF567 MUTATED     0   0   3   0
  ZNF567 WILD-TYPE 117  39  14   5
D51V7, multiclass
    clus
vv   ZNF567 MUTATED ZNF567 WILD-TYPE
  N0              0              117
  N1              0               39
  N2              3               14
  N3              0                5
                  vv
clus                M0  M1  MX
  ZNF567 MUTATED     3   0   0
  ZNF567 WILD-TYPE 162   3   6
D51V8, multiclass
    clus
vv   ZNF567 MUTATED ZNF567 WILD-TYPE
  M0              3              162
  M1              0                3
  MX              0                6
                  vv
clus                I II III+IV
  ZNF567 MUTATED    0  0      3
  ZNF567 WILD-TYPE 97 38     38
D51V9, multiclass
        clus
vv       ZNF567 MUTATED ZNF567 WILD-TYPE
  I                   0               97
  II                  0               38
  III+IV              3               38
D51V10, binary
                  cls
clus                 0   1
  ZNF567 MUTATED     0   3
  ZNF567 WILD-TYPE   4 171
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF567 MUTATED      0    3
  ZNF567 WILD-TYPE    4  171
     clus
vv    ZNF567 MUTATED ZNF567 WILD-TYPE
  NO               0                4
  YES              3              171
D51V11, continuous
[1] "Remove cluster labels:" "ZNF567 MUTATED"        
clus
  ZNF567 MUTATED ZNF567 WILD-TYPE 
               2              144 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3411       TCGA-18-3412       TCGA-18-3414       TCGA-18-3415 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3416       TCGA-18-3417       TCGA-18-3419       TCGA-18-3421 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-4083       TCGA-18-4086       TCGA-18-5592       TCGA-21-1070 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-21-1071       TCGA-21-1076       TCGA-21-1077       TCGA-21-1078 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-21-1081       TCGA-21-5782       TCGA-21-5784       TCGA-21-5786 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-21-5787       TCGA-22-0944       TCGA-22-1002       TCGA-22-1011 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-1012       TCGA-22-1016       TCGA-22-4593       TCGA-22-4595 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5480       TCGA-22-5482 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-33-4532       TCGA-33-4533       TCGA-33-4538       TCGA-33-4547 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-33-4566       TCGA-33-4582       TCGA-33-4583       TCGA-33-4586 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-33-6737       TCGA-34-2596       TCGA-34-2600       TCGA-34-2608 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-34-5231       TCGA-34-5240       TCGA-34-5241       TCGA-34-5928 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-34-5929       TCGA-37-4133       TCGA-37-4135       TCGA-37-5819 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5016       TCGA-39-5019       TCGA-39-5021       TCGA-39-5022 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5027       TCGA-39-5028       TCGA-39-5029       TCGA-39-5031 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5035       TCGA-39-5036       TCGA-39-5037       TCGA-39-5039 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-43-2578       TCGA-43-3394       TCGA-43-3920       TCGA-43-5668 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-43-6143       TCGA-43-6647       TCGA-43-6770       TCGA-43-6771 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-51-4079       TCGA-51-4081       TCGA-56-1622       TCGA-60-2707 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2708       TCGA-60-2709       TCGA-60-2710       TCGA-60-2711 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2713       TCGA-60-2715       TCGA-60-2719 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2720       TCGA-60-2721       TCGA-60-2722       TCGA-60-2723 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2724       TCGA-60-2725       TCGA-60-2726       TCGA-63-5131 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-63-6202       TCGA-66-2727       TCGA-66-2734       TCGA-66-2742 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2744       TCGA-66-2754       TCGA-66-2755       TCGA-66-2757 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2758       TCGA-66-2759       TCGA-66-2763       TCGA-66-2765 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2766       TCGA-66-2767       TCGA-66-2770       TCGA-66-2771 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2773       TCGA-66-2777       TCGA-66-2778       TCGA-66-2780 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2781       TCGA-66-2782       TCGA-66-2783       TCGA-66-2785 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2786       TCGA-66-2787       TCGA-66-2788       TCGA-66-2789 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2791       TCGA-66-2792       TCGA-66-2793       TCGA-66-2794 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2795       TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  ZNF567 MUTATED                                             1
  ZNF567 WILD-TYPE                                          93
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  ZNF567 MUTATED                                        1              1
  ZNF567 WILD-TYPE                                     42             27
                  vv
clus               LIFELONG NON-SMOKER
  ZNF567 MUTATED                     0
  ZNF567 WILD-TYPE                   8
D51V12, multiclass
                                             clus
vv                                            ZNF567 MUTATED ZNF567 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              1               93
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               42
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0                8
D51V13, continuous
                  vv
clus                R0  R1  R2  RX
  ZNF567 MUTATED     3   0   0   0
  ZNF567 WILD-TYPE 144   2   4  10
D51V14, multiclass
    clus
vv   ZNF567 MUTATED ZNF567 WILD-TYPE
  R0              3              144
  R1              0                2
  R2              0                4
  RX              0               10

Clustering(52) Variable = OR2A5 MUTATION ANALYSIS
D52V1, survival
                 sevent
clus2              0  1
  OR2A5 MUTATED    5  3
  OR2A5 WILD-TYPE 92 67
  OR2A5 MUTATED OR2A5 WILD-TYPE 
              8             159 
  OR2A5 MUTATED OR2A5 WILD-TYPE 
              3              67 
$`OR2A5 MUTATED`
TCGA-34-5929 TCGA-39-5016 TCGA-43-6771 TCGA-51-4079 TCGA-60-2709 TCGA-60-2711 
        4.96        74.07         5.42         0.39        49.48        29.19 
TCGA-66-2744 TCGA-66-2757 
        0.99         0.99 

$`OR2A5 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 
       38.17        34.75        13.12        19.30        11.77        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 
       64.90        63.52        14.60        44.22         0.79        71.34 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       11.74        30.08        62.86        56.32        16.60        82.98 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
      114.05        97.94        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 
       14.07        19.76         2.63        61.61        32.84        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 
       22.95         5.52         3.95         0.43         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        0.39         3.39        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-46-3768 TCGA-46-6025 
        8.48         7.00         6.02         2.79         9.96         0.95 
TCGA-46-6026 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.59         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2710 TCGA-60-2712 
        1.02        10.22        21.70        68.45        55.40         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2759 
       21.07         2.01         0.92         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  OR2A5 MUTATED OR2A5 WILD-TYPE 
           0.39            0.10 
  OR2A5 MUTATED OR2A5 WILD-TYPE 
          74.07          173.79 
  OR2A5 MUTATED OR2A5 WILD-TYPE 
           5.19           18.08 
[1] "0.4 - 74.1 (5.2)"   "0.1 - 173.8 (18.1)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
  "OR2A5 MUTATED" "OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
  "OR2A5 MUTATED" "OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
  "OR2A5 MUTATED" "OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
[1] "hr=" "1.1"
D52V2, continuous
D52V3, binary
                 cls
clus                0   1
  OR2A5 MUTATED     4   4
  OR2A5 WILD-TYPE  43 127
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2A5 MUTATED      4    4
  OR2A5 WILD-TYPE   43  127
        clus
vv       OR2A5 MUTATED OR2A5 WILD-TYPE
  FEMALE             4              43
  MALE               4             127
D52V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR2A5 MUTATED                                       1
  OR2A5 WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR2A5 MUTATED                                        0
  OR2A5 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR2A5 MUTATED                                                             7
  OR2A5 WILD-TYPE                                                         165
D52V5, multiclass
                                                             clus
vv                                                            OR2A5 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             7
                                                             clus
vv                                                            OR2A5 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             165
                 vv
clus               T1  T2  T3  T4
  OR2A5 MUTATED     1   7   0   0
  OR2A5 WILD-TYPE  35 109  14  12
D52V6, multiclass
    clus
vv   OR2A5 MUTATED OR2A5 WILD-TYPE
  T1             1              35
  T2             7             109
  T3             0              14
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  OR2A5 MUTATED     6   2   0   0
  OR2A5 WILD-TYPE 111  37  17   5
D52V7, multiclass
    clus
vv   OR2A5 MUTATED OR2A5 WILD-TYPE
  N0             6             111
  N1             2              37
  N2             0              17
  N3             0               5
                 vv
clus               M0  M1  MX
  OR2A5 MUTATED     5   0   2
  OR2A5 WILD-TYPE 160   3   4
D52V8, multiclass
    clus
vv   OR2A5 MUTATED OR2A5 WILD-TYPE
  M0             5             160
  M1             0               3
  MX             2               4
                 vv
clus               I II III+IV
  OR2A5 MUTATED    6  2      0
  OR2A5 WILD-TYPE 91 36     41
D52V9, multiclass
        clus
vv       OR2A5 MUTATED OR2A5 WILD-TYPE
  I                  6              91
  II                 2              36
  III+IV             0              41
D52V10, binary
                 cls
clus                0   1
  OR2A5 MUTATED     0   8
  OR2A5 WILD-TYPE   4 166
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2A5 MUTATED      0    8
  OR2A5 WILD-TYPE    4  166
     clus
vv    OR2A5 MUTATED OR2A5 WILD-TYPE
  NO              0               4
  YES             8             166
D52V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR2A5 MUTATED                                             5
  OR2A5 WILD-TYPE                                          89
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR2A5 MUTATED                                        2              1
  OR2A5 WILD-TYPE                                     41             27
                 vv
clus              LIFELONG NON-SMOKER
  OR2A5 MUTATED                     0
  OR2A5 WILD-TYPE                   8
D52V12, multiclass
                                             clus
vv                                            OR2A5 MUTATED OR2A5 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D52V13, continuous
                 vv
clus               R0  R1  R2  RX
  OR2A5 MUTATED     6   0   0   1
  OR2A5 WILD-TYPE 141   2   4   9
D52V14, multiclass
    clus
vv   OR2A5 MUTATED OR2A5 WILD-TYPE
  R0             6             141
  R1             0               2
  R2             0               4
  RX             1               9

Clustering(53) Variable = PARK2 MUTATION ANALYSIS
D53V1, survival
                 sevent
clus2              0  1
  PARK2 MUTATED    6  4
  PARK2 WILD-TYPE 91 66
  PARK2 MUTATED PARK2 WILD-TYPE 
             10             157 
  PARK2 MUTATED PARK2 WILD-TYPE 
              4              66 
$`PARK2 MUTATED`
TCGA-18-3409 TCGA-21-1081 TCGA-21-5787 TCGA-22-4593 TCGA-34-2608 TCGA-60-2713 
       79.46         9.30        10.82        35.08        32.84        47.87 
TCGA-66-2754 TCGA-66-2757 TCGA-66-2763 TCGA-66-2777 
        2.01         0.99         0.99         2.01 

$`PARK2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-5782 TCGA-21-5784 
       46.88        60.89        34.78        15.55        31.63        29.85 
TCGA-21-5786 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       21.57         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 
       20.45        24.13        38.17        34.75        13.12        19.30 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
        0.79        71.34        11.74        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         4.96         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
        9.01        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2759 
       21.07         0.99         0.92         0.99        20.98        25.02 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        3.02        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
        1.94        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 
TCGA-85-6561 
        0.79 

  PARK2 MUTATED PARK2 WILD-TYPE 
           0.99            0.10 
  PARK2 MUTATED PARK2 WILD-TYPE 
          79.46          173.79 
  PARK2 MUTATED PARK2 WILD-TYPE 
          10.06           18.08 
[1] "1.0 - 79.5 (10.1)"  "0.1 - 173.8 (18.1)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" "PARK2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
  "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
  "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" "PARK2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"PARK2 WILD-TYPE"   "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
  "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" "PARK2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
  "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
  "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" "PARK2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"PARK2 WILD-TYPE"   "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
  "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" "PARK2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
  "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
  "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" "PARK2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"PARK2 WILD-TYPE"   "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
  "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
[1] "hr=" "1.1"
D53V2, continuous
D53V3, binary
                 cls
clus                0   1
  PARK2 MUTATED     2   8
  PARK2 WILD-TYPE  45 123
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PARK2 MUTATED      2    8
  PARK2 WILD-TYPE   45  123
        clus
vv       PARK2 MUTATED PARK2 WILD-TYPE
  FEMALE             2              45
  MALE               8             123
D53V4, continuous
[1] "Remove cluster labels:" "PARK2 MUTATED"         
clus
  PARK2 MUTATED PARK2 WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-22-4591      TCGA-22-4595 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4613 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-5472      TCGA-22-5473      TCGA-22-5474      TCGA-22-5477 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-5478      TCGA-22-5480      TCGA-22-5482      TCGA-22-5485 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-34-5234 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-5819      TCGA-60-2698 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2725      TCGA-60-2726 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  PARK2 MUTATED                                       1
  PARK2 WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  PARK2 MUTATED                                        0
  PARK2 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PARK2 MUTATED                                                             9
  PARK2 WILD-TYPE                                                         163
D53V5, multiclass
                                                             clus
vv                                                            PARK2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             9
                                                             clus
vv                                                            PARK2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             163
                 vv
clus               T1  T2  T3  T4
  PARK2 MUTATED     2   8   0   0
  PARK2 WILD-TYPE  34 108  14  12
D53V6, multiclass
    clus
vv   PARK2 MUTATED PARK2 WILD-TYPE
  T1             2              34
  T2             8             108
  T3             0              14
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  PARK2 MUTATED     7   1   2   0
  PARK2 WILD-TYPE 110  38  15   5
D53V7, multiclass
    clus
vv   PARK2 MUTATED PARK2 WILD-TYPE
  N0             7             110
  N1             1              38
  N2             2              15
  N3             0               5
                 vv
clus               M0  M1  MX
  PARK2 MUTATED    10   0   0
  PARK2 WILD-TYPE 155   3   6
D53V8, multiclass
    clus
vv   PARK2 MUTATED PARK2 WILD-TYPE
  M0            10             155
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  PARK2 MUTATED    5  2      2
  PARK2 WILD-TYPE 92 36     39
D53V9, multiclass
        clus
vv       PARK2 MUTATED PARK2 WILD-TYPE
  I                  5              92
  II                 2              36
  III+IV             2              39
D53V10, binary
                 cls
clus                0   1
  PARK2 MUTATED     1   9
  PARK2 WILD-TYPE   3 165
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PARK2 MUTATED      1    9
  PARK2 WILD-TYPE    3  165
     clus
vv    PARK2 MUTATED PARK2 WILD-TYPE
  NO              1               3
  YES             9             165
D53V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  PARK2 MUTATED                                             7
  PARK2 WILD-TYPE                                          87
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  PARK2 MUTATED                                        2              1
  PARK2 WILD-TYPE                                     41             27
                 vv
clus              LIFELONG NON-SMOKER
  PARK2 MUTATED                     0
  PARK2 WILD-TYPE                   8
D53V12, multiclass
                                             clus
vv                                            PARK2 MUTATED PARK2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             7              87
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D53V13, continuous
                 vv
clus               R0  R1  R2  RX
  PARK2 MUTATED    10   0   0   0
  PARK2 WILD-TYPE 137   2   4  10
D53V14, multiclass
    clus
vv   PARK2 MUTATED PARK2 WILD-TYPE
  R0            10             137
  R1             0               2
  R2             0               4
  RX             0              10

Clustering(54) Variable = HS6ST1 MUTATION ANALYSIS
D54V1, survival
                  sevent
clus2               0  1
  HS6ST1 MUTATED    4  1
  HS6ST1 WILD-TYPE 93 69
  HS6ST1 MUTATED HS6ST1 WILD-TYPE 
               5              162 
  HS6ST1 MUTATED HS6ST1 WILD-TYPE 
               1               69 
$`HS6ST1 MUTATED`
TCGA-18-3409 TCGA-39-5030 TCGA-43-3394 TCGA-66-2756 TCGA-66-2771 
       79.46         1.94        11.57         0.99        19.00 

$`HS6ST1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 
        5.52         4.96         3.95         0.43         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        0.39         3.39        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5031 TCGA-39-5035 
       70.03        60.76         1.71        24.33        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3920 TCGA-43-5668 
       35.64         0.79        17.88        18.08        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.92         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 
        1.02         2.01         2.01        23.01         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  HS6ST1 MUTATED HS6ST1 WILD-TYPE 
            0.99             0.10 
  HS6ST1 MUTATED HS6ST1 WILD-TYPE 
           79.46           173.79 
  HS6ST1 MUTATED HS6ST1 WILD-TYPE 
           11.57            17.98 
[1] "1.0 - 79.5 (11.6)"  "0.1 - 173.8 (18.0)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE"   "HS6ST1 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"HS6ST1 WILD-TYPE"   "HS6ST1 MUTATED" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
  "HS6ST1 MUTATED" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
  "HS6ST1 MUTATED" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE"   "HS6ST1 MUTATED" "HS6ST1 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE"   "HS6ST1 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"HS6ST1 WILD-TYPE"   "HS6ST1 MUTATED" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
  "HS6ST1 MUTATED" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
  "HS6ST1 MUTATED" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE"   "HS6ST1 MUTATED" "HS6ST1 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE"   "HS6ST1 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"HS6ST1 WILD-TYPE"   "HS6ST1 MUTATED" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
  "HS6ST1 MUTATED" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
  "HS6ST1 MUTATED" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE"   "HS6ST1 MUTATED" "HS6ST1 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
[1] "hr=" "1.9"
D54V2, continuous
D54V3, binary
                  cls
clus                 0   1
  HS6ST1 MUTATED     1   4
  HS6ST1 WILD-TYPE  46 127
[1] "tbl2"
                  cls
clus               [,1] [,2]
  HS6ST1 MUTATED      1    4
  HS6ST1 WILD-TYPE   46  127
        clus
vv       HS6ST1 MUTATED HS6ST1 WILD-TYPE
  FEMALE              1               46
  MALE                4              127
D54V4, continuous
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  HS6ST1 MUTATED                                       1
  HS6ST1 WILD-TYPE                                     4
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  HS6ST1 MUTATED                                        0
  HS6ST1 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  HS6ST1 MUTATED                                                             4
  HS6ST1 WILD-TYPE                                                         168
D54V5, multiclass
                                                             clus
vv                                                            HS6ST1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              4
                                                             clus
vv                                                            HS6ST1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              168
                  vv
clus                T1  T2  T3  T4
  HS6ST1 MUTATED     1   3   0   1
  HS6ST1 WILD-TYPE  35 113  14  11
D54V6, multiclass
    clus
vv   HS6ST1 MUTATED HS6ST1 WILD-TYPE
  T1              1               35
  T2              3              113
  T3              0               14
  T4              1               11
                  vv
clus                N0  N1  N2  N3
  HS6ST1 MUTATED     3   1   1   0
  HS6ST1 WILD-TYPE 114  38  16   5
D54V7, multiclass
    clus
vv   HS6ST1 MUTATED HS6ST1 WILD-TYPE
  N0              3              114
  N1              1               38
  N2              1               16
  N3              0                5
                  vv
clus                M0  M1  MX
  HS6ST1 MUTATED     5   0   0
  HS6ST1 WILD-TYPE 160   3   6
D54V8, multiclass
    clus
vv   HS6ST1 MUTATED HS6ST1 WILD-TYPE
  M0              5              160
  M1              0                3
  MX              0                6
                  vv
clus                I II III+IV
  HS6ST1 MUTATED    1  1      2
  HS6ST1 WILD-TYPE 96 37     39
D54V9, multiclass
        clus
vv       HS6ST1 MUTATED HS6ST1 WILD-TYPE
  I                   1               96
  II                  1               37
  III+IV              2               39
D54V10, binary
                  cls
clus                 0   1
  HS6ST1 MUTATED     0   5
  HS6ST1 WILD-TYPE   4 169
[1] "tbl2"
                  cls
clus               [,1] [,2]
  HS6ST1 MUTATED      0    5
  HS6ST1 WILD-TYPE    4  169
     clus
vv    HS6ST1 MUTATED HS6ST1 WILD-TYPE
  NO               0                4
  YES              5              169
D54V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  HS6ST1 MUTATED                                             2
  HS6ST1 WILD-TYPE                                          92
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  HS6ST1 MUTATED                                        2              1
  HS6ST1 WILD-TYPE                                     41             27
                  vv
clus               LIFELONG NON-SMOKER
  HS6ST1 MUTATED                     0
  HS6ST1 WILD-TYPE                   8
D54V12, multiclass
                                             clus
vv                                            HS6ST1 MUTATED HS6ST1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              2               92
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               41
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0                8
D54V13, continuous
                  vv
clus                R0  R1  R2  RX
  HS6ST1 MUTATED     5   0   0   0
  HS6ST1 WILD-TYPE 142   2   4  10
D54V14, multiclass
    clus
vv   HS6ST1 MUTATED HS6ST1 WILD-TYPE
  R0              5              142
  R1              0                2
  R2              0                4
  RX              0               10

Clustering(55) Variable = RNF144A MUTATION ANALYSIS
D55V1, survival
                   sevent
clus2                0  1
  RNF144A MUTATED    4  3
  RNF144A WILD-TYPE 93 67
  RNF144A MUTATED RNF144A WILD-TYPE 
                7               160 
  RNF144A MUTATED RNF144A WILD-TYPE 
                3                67 
$`RNF144A MUTATED`
TCGA-22-1016 TCGA-34-2600 TCGA-34-5236 TCGA-39-5019 TCGA-43-3394 TCGA-66-2756 
       27.02        61.61         9.04        44.71        11.57         0.99 
TCGA-66-2786 
       25.97 

$`RNF144A WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
        1.74        14.10        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
       19.76         2.63        32.84        50.24        51.78        32.68 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       74.07        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       17.88        18.08        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2787 
       12.03         3.98        12.00        24.95         1.94        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  RNF144A MUTATED RNF144A WILD-TYPE 
             0.99              0.10 
  RNF144A MUTATED RNF144A WILD-TYPE 
            61.61            173.79 
  RNF144A MUTATED RNF144A WILD-TYPE 
            25.97             17.42 
[1] "1.0 - 61.6 (26.0)"  "0.1 - 173.8 (17.4)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
  "RNF144A MUTATED" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE"   "RNF144A MUTATED" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "RNF144A MUTATED" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE"   "RNF144A MUTATED" "RNF144A WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
  "RNF144A MUTATED" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "RNF144A MUTATED" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE"   "RNF144A MUTATED" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
  "RNF144A MUTATED" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE"   "RNF144A MUTATED" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "RNF144A MUTATED" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE"   "RNF144A MUTATED" "RNF144A WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
  "RNF144A MUTATED" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "RNF144A MUTATED" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE"   "RNF144A MUTATED" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
  "RNF144A MUTATED" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE"   "RNF144A MUTATED" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "RNF144A MUTATED" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE"   "RNF144A MUTATED" "RNF144A WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
  "RNF144A MUTATED" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "RNF144A MUTATED" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE"   "RNF144A MUTATED" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
[1] "hr=" "1.1"
D55V2, continuous
D55V3, binary
                   cls
clus                  0   1
  RNF144A MUTATED     2   5
  RNF144A WILD-TYPE  45 126
[1] "tbl2"
                   cls
clus                [,1] [,2]
  RNF144A MUTATED      2    5
  RNF144A WILD-TYPE   45  126
        clus
vv       RNF144A MUTATED RNF144A WILD-TYPE
  FEMALE               2                45
  MALE                 5               126
D55V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  RNF144A MUTATED                                       0
  RNF144A WILD-TYPE                                     5
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  RNF144A MUTATED                                        0
  RNF144A WILD-TYPE                                      1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  RNF144A MUTATED                                                             7
  RNF144A WILD-TYPE                                                         165
D55V5, multiclass
                                                             clus
vv                                                            RNF144A MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               7
                                                             clus
vv                                                            RNF144A WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               165
                   vv
clus                 T1  T2  T3  T4
  RNF144A MUTATED     2   3   1   1
  RNF144A WILD-TYPE  34 113  13  11
D55V6, multiclass
    clus
vv   RNF144A MUTATED RNF144A WILD-TYPE
  T1               2                34
  T2               3               113
  T3               1                13
  T4               1                11
                   vv
clus                 N0  N1  N2  N3
  RNF144A MUTATED     7   0   0   0
  RNF144A WILD-TYPE 110  39  17   5
D55V7, multiclass
    clus
vv   RNF144A MUTATED RNF144A WILD-TYPE
  N0               7               110
  N1               0                39
  N2               0                17
  N3               0                 5
                   vv
clus                 M0  M1  MX
  RNF144A MUTATED     7   0   0
  RNF144A WILD-TYPE 158   3   6
D55V8, multiclass
    clus
vv   RNF144A MUTATED RNF144A WILD-TYPE
  M0               7               158
  M1               0                 3
  MX               0                 6
                   vv
clus                 I II III+IV
  RNF144A MUTATED    5  1      1
  RNF144A WILD-TYPE 92 37     40
D55V9, multiclass
        clus
vv       RNF144A MUTATED RNF144A WILD-TYPE
  I                    5                92
  II                   1                37
  III+IV               1                40
D55V10, binary
                   cls
clus                  0   1
  RNF144A MUTATED     0   7
  RNF144A WILD-TYPE   4 167
[1] "tbl2"
                   cls
clus                [,1] [,2]
  RNF144A MUTATED      0    7
  RNF144A WILD-TYPE    4  167
     clus
vv    RNF144A MUTATED RNF144A WILD-TYPE
  NO                0                 4
  YES               7               167
D55V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  RNF144A MUTATED                                             3
  RNF144A WILD-TYPE                                          91
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  RNF144A MUTATED                                        2              1
  RNF144A WILD-TYPE                                     41             27
                   vv
clus                LIFELONG NON-SMOKER
  RNF144A MUTATED                     0
  RNF144A WILD-TYPE                   8
D55V12, multiclass
                                             clus
vv                                            RNF144A MUTATED RNF144A WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               3                91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                41
  CURRENT SMOKER                                            1                27
  LIFELONG NON-SMOKER                                       0                 8
D55V13, continuous
                   vv
clus                 R0  R1  R2  RX
  RNF144A MUTATED     6   0   0   0
  RNF144A WILD-TYPE 141   2   4  10
D55V14, multiclass
    clus
vv   RNF144A MUTATED RNF144A WILD-TYPE
  R0               6               141
  R1               0                 2
  R2               0                 4
  RX               0                10

Clustering(56) Variable = CALN1 MUTATION ANALYSIS
D56V1, survival
                 sevent
clus2              0  1
  CALN1 MUTATED    7  2
  CALN1 WILD-TYPE 90 68
  CALN1 MUTATED CALN1 WILD-TYPE 
              9             158 
  CALN1 MUTATED CALN1 WILD-TYPE 
              2              68 
$`CALN1 MUTATED`
TCGA-18-4721 TCGA-21-1081 TCGA-22-5474 TCGA-37-4135 TCGA-37-5819 TCGA-39-5037 
       90.51         9.30        14.60         6.81         3.39         0.79 
TCGA-66-2763 TCGA-66-2768 TCGA-66-2783 
        0.99         2.01        24.95 

$`CALN1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
       43.76         6.15         2.79         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-5782 TCGA-21-5784 
       46.88        60.89        34.78        15.55        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4141 TCGA-39-5016 TCGA-39-5019 
        3.95         0.43         7.82         0.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 TCGA-43-2578 
        1.94        27.35        15.58        35.64        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
       21.07         0.99         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2770 
       20.98        25.02         2.01         1.02         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       12.00         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  CALN1 MUTATED CALN1 WILD-TYPE 
           0.79            0.10 
  CALN1 MUTATED CALN1 WILD-TYPE 
          90.51          173.79 
  CALN1 MUTATED CALN1 WILD-TYPE 
           6.81           18.92 
[1] "0.8 - 90.5 (6.8)"   "0.1 - 173.8 (18.9)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE"   "CALN1 MUTATED" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE"   "CALN1 MUTATED" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
  "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE"   "CALN1 MUTATED" "CALN1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"CALN1 WILD-TYPE"   "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
  "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"CALN1 WILD-TYPE"   "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE"   "CALN1 MUTATED" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE"   "CALN1 MUTATED" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
  "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE"   "CALN1 MUTATED" "CALN1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"CALN1 WILD-TYPE"   "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
  "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"CALN1 WILD-TYPE"   "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE"   "CALN1 MUTATED" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE"   "CALN1 MUTATED" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
  "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE"   "CALN1 MUTATED" "CALN1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"CALN1 WILD-TYPE"   "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
  "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"CALN1 WILD-TYPE"   "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
[1] "hr=" "1.2"
D56V2, continuous
D56V3, binary
                 cls
clus                0   1
  CALN1 MUTATED     1   8
  CALN1 WILD-TYPE  46 123
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CALN1 MUTATED      1    8
  CALN1 WILD-TYPE   46  123
        clus
vv       CALN1 MUTATED CALN1 WILD-TYPE
  FEMALE             1              46
  MALE               8             123
D56V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  CALN1 MUTATED                                       0
  CALN1 WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  CALN1 MUTATED                                        0
  CALN1 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CALN1 MUTATED                                                             9
  CALN1 WILD-TYPE                                                         163
D56V5, multiclass
                                                             clus
vv                                                            CALN1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             9
                                                             clus
vv                                                            CALN1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             163
                 vv
clus               T1  T2  T3  T4
  CALN1 MUTATED     2   7   0   0
  CALN1 WILD-TYPE  34 109  14  12
D56V6, multiclass
    clus
vv   CALN1 MUTATED CALN1 WILD-TYPE
  T1             2              34
  T2             7             109
  T3             0              14
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  CALN1 MUTATED     4   3   1   1
  CALN1 WILD-TYPE 113  36  16   4
D56V7, multiclass
    clus
vv   CALN1 MUTATED CALN1 WILD-TYPE
  N0             4             113
  N1             3              36
  N2             1              16
  N3             1               4
                 vv
clus               M0  M1  MX
  CALN1 MUTATED     9   0   0
  CALN1 WILD-TYPE 156   3   6
D56V8, multiclass
    clus
vv   CALN1 MUTATED CALN1 WILD-TYPE
  M0             9             156
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  CALN1 MUTATED    3  3      3
  CALN1 WILD-TYPE 94 35     38
D56V9, multiclass
        clus
vv       CALN1 MUTATED CALN1 WILD-TYPE
  I                  3              94
  II                 3              35
  III+IV             3              38
D56V10, binary
                 cls
clus                0   1
  CALN1 MUTATED     0   9
  CALN1 WILD-TYPE   4 165
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CALN1 MUTATED      0    9
  CALN1 WILD-TYPE    4  165
     clus
vv    CALN1 MUTATED CALN1 WILD-TYPE
  NO              0               4
  YES             9             165
D56V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  CALN1 MUTATED                                             5
  CALN1 WILD-TYPE                                          89
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  CALN1 MUTATED                                        2              1
  CALN1 WILD-TYPE                                     41             27
                 vv
clus              LIFELONG NON-SMOKER
  CALN1 MUTATED                     1
  CALN1 WILD-TYPE                   7
D56V12, multiclass
                                             clus
vv                                            CALN1 MUTATED CALN1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     1               7
D56V13, continuous
                 vv
clus               R0  R1  R2  RX
  CALN1 MUTATED     8   0   1   0
  CALN1 WILD-TYPE 139   2   3  10
D56V14, multiclass
    clus
vv   CALN1 MUTATED CALN1 WILD-TYPE
  R0             8             139
  R1             0               2
  R2             1               3
  RX             0              10

Clustering(57) Variable = ZNF80 MUTATION ANALYSIS
D57V1, survival
                 sevent
clus2              0  1
  ZNF80 MUTATED    3  4
  ZNF80 WILD-TYPE 94 66
  ZNF80 MUTATED ZNF80 WILD-TYPE 
              7             160 
  ZNF80 MUTATED ZNF80 WILD-TYPE 
              4              66 
$`ZNF80 MUTATED`
TCGA-18-3409 TCGA-22-4595 TCGA-37-3789 TCGA-39-5021 TCGA-56-1622 TCGA-66-2766 
       79.46        24.13         0.43        68.58        28.93         1.02 
TCGA-66-2791 
        5.03 

$`ZNF80 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4599 TCGA-22-4601 
       14.10        27.02        20.45        35.08        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        4.96         3.95         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       74.07        44.71        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         0.39         2.07         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 
        0.99        20.98        25.02         0.99         2.01         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       40.01        22.98         4.04        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  ZNF80 MUTATED ZNF80 WILD-TYPE 
           0.43            0.10 
  ZNF80 MUTATED ZNF80 WILD-TYPE 
          79.46          173.79 
  ZNF80 MUTATED ZNF80 WILD-TYPE 
          24.13           17.42 
[1] "0.4 - 79.5 (24.1)"  "0.1 - 173.8 (17.4)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "ZNF80 MUTATED" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ZNF80 WILD-TYPE"   "ZNF80 MUTATED" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" "ZNF80 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "ZNF80 MUTATED" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ZNF80 WILD-TYPE"   "ZNF80 MUTATED" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" "ZNF80 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "ZNF80 MUTATED" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ZNF80 WILD-TYPE"   "ZNF80 MUTATED" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" "ZNF80 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
[1] "hr=" "1.2"
D57V2, continuous
D57V3, binary
                 cls
clus                0   1
  ZNF80 MUTATED     0   7
  ZNF80 WILD-TYPE  47 124
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZNF80 MUTATED      0    7
  ZNF80 WILD-TYPE   47  124
        clus
vv       ZNF80 MUTATED ZNF80 WILD-TYPE
  FEMALE             0              47
  MALE               7             124
D57V4, continuous
[1] "Remove cluster labels:" "ZNF80 MUTATED"         
clus
  ZNF80 MUTATED ZNF80 WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4599      TCGA-22-4601      TCGA-22-4604 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  ZNF80 MUTATED                                       1
  ZNF80 WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  ZNF80 MUTATED                                        0
  ZNF80 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ZNF80 MUTATED                                                             6
  ZNF80 WILD-TYPE                                                         166
D57V5, multiclass
                                                             clus
vv                                                            ZNF80 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             6
                                                             clus
vv                                                            ZNF80 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             166
                 vv
clus               T1  T2  T3  T4
  ZNF80 MUTATED     1   5   1   0
  ZNF80 WILD-TYPE  35 111  13  12
D57V6, multiclass
    clus
vv   ZNF80 MUTATED ZNF80 WILD-TYPE
  T1             1              35
  T2             5             111
  T3             1              13
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  ZNF80 MUTATED     4   0   2   1
  ZNF80 WILD-TYPE 113  39  15   4
D57V7, multiclass
    clus
vv   ZNF80 MUTATED ZNF80 WILD-TYPE
  N0             4             113
  N1             0              39
  N2             2              15
  N3             1               4
                 vv
clus               M0  M1  MX
  ZNF80 MUTATED     5   0   0
  ZNF80 WILD-TYPE 160   3   6
D57V8, multiclass
    clus
vv   ZNF80 MUTATED ZNF80 WILD-TYPE
  M0             5             160
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  ZNF80 MUTATED    3  0      3
  ZNF80 WILD-TYPE 94 38     38
D57V9, multiclass
        clus
vv       ZNF80 MUTATED ZNF80 WILD-TYPE
  I                  3              94
  II                 0              38
  III+IV             3              38
D57V10, binary
                 cls
clus                0   1
  ZNF80 MUTATED     1   6
  ZNF80 WILD-TYPE   3 168
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZNF80 MUTATED      1    6
  ZNF80 WILD-TYPE    3  168
     clus
vv    ZNF80 MUTATED ZNF80 WILD-TYPE
  NO              1               3
  YES             6             168
D57V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  ZNF80 MUTATED                                             3
  ZNF80 WILD-TYPE                                          91
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  ZNF80 MUTATED                                        2              1
  ZNF80 WILD-TYPE                                     41             27
                 vv
clus              LIFELONG NON-SMOKER
  ZNF80 MUTATED                     1
  ZNF80 WILD-TYPE                   7
D57V12, multiclass
                                             clus
vv                                            ZNF80 MUTATED ZNF80 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     1               7
D57V13, continuous
                 vv
clus               R0  R1  R2  RX
  ZNF80 MUTATED     6   1   0   0
  ZNF80 WILD-TYPE 141   1   4  10
D57V14, multiclass
    clus
vv   ZNF80 MUTATED ZNF80 WILD-TYPE
  R0             6             141
  R1             1               1
  R2             0               4
  RX             0              10

Clustering(58) Variable = CLVS2 MUTATION ANALYSIS
D58V1, survival
                 sevent
clus2              0  1
  CLVS2 MUTATED    5  4
  CLVS2 WILD-TYPE 92 66
  CLVS2 MUTATED CLVS2 WILD-TYPE 
              9             158 
  CLVS2 MUTATED CLVS2 WILD-TYPE 
              4              66 
$`CLVS2 MUTATED`
TCGA-18-3416 TCGA-22-1002 TCGA-22-5473 TCGA-34-2600 TCGA-34-5929 TCGA-43-3920 
       28.34         4.31        63.52        61.61         4.96        18.84 
TCGA-60-2723 TCGA-66-2786 TCGA-66-2787 
       22.78        25.97        40.01 

$`CLVS2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        13.02        59.51        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1011 TCGA-22-1012 
       29.85        21.57        10.82         7.33         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 
       13.12        19.30        11.77        31.69        64.90        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-37-3783 TCGA-37-3789 
        7.73        14.07        22.95         5.52         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       18.08        11.57         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2788 TCGA-66-2789 
        3.98        12.00        24.95         1.94        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  CLVS2 MUTATED CLVS2 WILD-TYPE 
           4.31            0.10 
  CLVS2 MUTATED CLVS2 WILD-TYPE 
          63.52          173.79 
  CLVS2 MUTATED CLVS2 WILD-TYPE 
          25.97           16.09 
[1] "4.3 - 63.5 (26.0)"  "0.1 - 173.8 (16.1)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
[1] "hr=" "1.1"
D58V2, continuous
D58V3, binary
                 cls
clus                0   1
  CLVS2 MUTATED     4   5
  CLVS2 WILD-TYPE  43 126
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CLVS2 MUTATED      4    5
  CLVS2 WILD-TYPE   43  126
        clus
vv       CLVS2 MUTATED CLVS2 WILD-TYPE
  FEMALE             4              43
  MALE               5             126
D58V4, continuous
[1] "Remove cluster labels:" "CLVS2 MUTATED"         
clus
  CLVS2 MUTATED CLVS2 WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-4604      TCGA-22-4613      TCGA-22-5472      TCGA-22-5474 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  CLVS2 MUTATED                                       0
  CLVS2 WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  CLVS2 MUTATED                                        0
  CLVS2 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CLVS2 MUTATED                                                             9
  CLVS2 WILD-TYPE                                                         163
D58V5, multiclass
                                                             clus
vv                                                            CLVS2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             9
                                                             clus
vv                                                            CLVS2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             163
                 vv
clus               T1  T2  T3  T4
  CLVS2 MUTATED     4   4   1   0
  CLVS2 WILD-TYPE  32 112  13  12
D58V6, multiclass
    clus
vv   CLVS2 MUTATED CLVS2 WILD-TYPE
  T1             4              32
  T2             4             112
  T3             1              13
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  CLVS2 MUTATED     8   1   0   0
  CLVS2 WILD-TYPE 109  38  17   5
D58V7, multiclass
    clus
vv   CLVS2 MUTATED CLVS2 WILD-TYPE
  N0             8             109
  N1             1              38
  N2             0              17
  N3             0               5
                 vv
clus               M0  M1  MX
  CLVS2 MUTATED     9   0   0
  CLVS2 WILD-TYPE 156   3   6
D58V8, multiclass
    clus
vv   CLVS2 MUTATED CLVS2 WILD-TYPE
  M0             9             156
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  CLVS2 MUTATED    8  1      0
  CLVS2 WILD-TYPE 89 37     41
D58V9, multiclass
        clus
vv       CLVS2 MUTATED CLVS2 WILD-TYPE
  I                  8              89
  II                 1              37
  III+IV             0              41
D58V10, binary
                 cls
clus                0   1
  CLVS2 MUTATED     0   9
  CLVS2 WILD-TYPE   4 165
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CLVS2 MUTATED      0    9
  CLVS2 WILD-TYPE    4  165
     clus
vv    CLVS2 MUTATED CLVS2 WILD-TYPE
  NO              0               4
  YES             9             165
D58V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  CLVS2 MUTATED                                             6
  CLVS2 WILD-TYPE                                          88
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  CLVS2 MUTATED                                        3              0
  CLVS2 WILD-TYPE                                     40             28
                 vv
clus              LIFELONG NON-SMOKER
  CLVS2 MUTATED                     0
  CLVS2 WILD-TYPE                   8
D58V12, multiclass
                                             clus
vv                                            CLVS2 MUTATED CLVS2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             6              88
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              40
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     0               8
D58V13, continuous
                 vv
clus               R0  R1  R2  RX
  CLVS2 MUTATED     8   0   0   0
  CLVS2 WILD-TYPE 139   2   4  10
D58V14, multiclass
    clus
vv   CLVS2 MUTATED CLVS2 WILD-TYPE
  R0             8             139
  R1             0               2
  R2             0               4
  RX             0              10

Clustering(59) Variable = OR5M9 MUTATION ANALYSIS
D59V1, survival
                 sevent
clus2              0  1
  OR5M9 MUTATED    2  4
  OR5M9 WILD-TYPE 95 66
  OR5M9 MUTATED OR5M9 WILD-TYPE 
              6             161 
  OR5M9 MUTATED OR5M9 WILD-TYPE 
              4              66 
$`OR5M9 MUTATED`
TCGA-21-5786 TCGA-22-4593 TCGA-22-4613 TCGA-43-6771 TCGA-66-2742 TCGA-66-2789 
       21.57        35.08        11.77         5.42        21.07         4.04 

$`OR5M9 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       31.63        29.85        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       14.10        27.02        20.45        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       13.12        19.30        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        7.00         6.02         2.79         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       16.96        43.10         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       25.97        40.01        22.98         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  OR5M9 MUTATED OR5M9 WILD-TYPE 
           4.04            0.10 
  OR5M9 MUTATED OR5M9 WILD-TYPE 
          35.08          173.79 
  OR5M9 MUTATED OR5M9 WILD-TYPE 
          16.42           17.88 
[1] "4.0 - 35.1 (16.4)"  "0.1 - 173.8 (17.9)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE"   "OR5M9 MUTATED" "OR5M9 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE"   "OR5M9 MUTATED" "OR5M9 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "OR5M9 MUTATED" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE"   "OR5M9 MUTATED" "OR5M9 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
  "OR5M9 MUTATED" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE"   "OR5M9 MUTATED" "OR5M9 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE"   "OR5M9 MUTATED" "OR5M9 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE"   "OR5M9 MUTATED" "OR5M9 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "OR5M9 MUTATED" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE"   "OR5M9 MUTATED" "OR5M9 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
  "OR5M9 MUTATED" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE"   "OR5M9 MUTATED" "OR5M9 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE"   "OR5M9 MUTATED" "OR5M9 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE"   "OR5M9 MUTATED" "OR5M9 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "OR5M9 MUTATED" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE"   "OR5M9 MUTATED" "OR5M9 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
  "OR5M9 MUTATED" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE"   "OR5M9 MUTATED" "OR5M9 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
[1] "hr=" "2.2"
D59V2, continuous
D59V3, binary
                 cls
clus                0   1
  OR5M9 MUTATED     1   7
  OR5M9 WILD-TYPE  46 124
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5M9 MUTATED      1    7
  OR5M9 WILD-TYPE   46  124
        clus
vv       OR5M9 MUTATED OR5M9 WILD-TYPE
  FEMALE             1              46
  MALE               7             124
D59V4, continuous
[1] "Remove cluster labels:" "OR5M9 MUTATED"         
clus
  OR5M9 MUTATED OR5M9 WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-4595      TCGA-22-4599      TCGA-22-4601      TCGA-22-4604 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-5472      TCGA-22-5473      TCGA-22-5474      TCGA-22-5477 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-5478      TCGA-22-5480      TCGA-22-5482      TCGA-22-5485 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-34-5234 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-5819      TCGA-60-2698 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2725      TCGA-60-2726 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR5M9 MUTATED                                       0
  OR5M9 WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR5M9 MUTATED                                        0
  OR5M9 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR5M9 MUTATED                                                             8
  OR5M9 WILD-TYPE                                                         164
D59V5, multiclass
                                                             clus
vv                                                            OR5M9 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             8
                                                             clus
vv                                                            OR5M9 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             164
                 vv
clus               T1  T2  T3  T4
  OR5M9 MUTATED     2   5   0   1
  OR5M9 WILD-TYPE  34 111  14  11
D59V6, multiclass
    clus
vv   OR5M9 MUTATED OR5M9 WILD-TYPE
  T1             2              34
  T2             5             111
  T3             0              14
  T4             1              11
                 vv
clus               N0  N1  N2  N3
  OR5M9 MUTATED     6   1   0   1
  OR5M9 WILD-TYPE 111  38  17   4
D59V7, multiclass
    clus
vv   OR5M9 MUTATED OR5M9 WILD-TYPE
  N0             6             111
  N1             1              38
  N2             0              17
  N3             1               4
                 vv
clus               M0  M1  MX
  OR5M9 MUTATED     6   1   1
  OR5M9 WILD-TYPE 159   2   5
D59V8, multiclass
    clus
vv   OR5M9 MUTATED OR5M9 WILD-TYPE
  M0             6             159
  M1             1               2
  MX             1               5
                 vv
clus               I II III+IV
  OR5M9 MUTATED    4  2      2
  OR5M9 WILD-TYPE 93 36     39
D59V9, multiclass
        clus
vv       OR5M9 MUTATED OR5M9 WILD-TYPE
  I                  4              93
  II                 2              36
  III+IV             2              39
D59V10, binary
                 cls
clus                0   1
  OR5M9 MUTATED     0   8
  OR5M9 WILD-TYPE   4 166
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5M9 MUTATED      0    8
  OR5M9 WILD-TYPE    4  166
     clus
vv    OR5M9 MUTATED OR5M9 WILD-TYPE
  NO              0               4
  YES             8             166
D59V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR5M9 MUTATED                                             4
  OR5M9 WILD-TYPE                                          90
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR5M9 MUTATED                                        3              1
  OR5M9 WILD-TYPE                                     40             27
                 vv
clus              LIFELONG NON-SMOKER
  OR5M9 MUTATED                     0
  OR5M9 WILD-TYPE                   8
D59V12, multiclass
                                             clus
vv                                            OR5M9 MUTATED OR5M9 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              40
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D59V13, continuous
                 vv
clus               R0  R1  R2  RX
  OR5M9 MUTATED     6   1   0   1
  OR5M9 WILD-TYPE 141   1   4   9
D59V14, multiclass
    clus
vv   OR5M9 MUTATED OR5M9 WILD-TYPE
  R0             6             141
  R1             1               1
  R2             0               4
  RX             1               9

Clustering(60) Variable = SLC17A8 MUTATION ANALYSIS
D60V1, survival
                   sevent
clus2                0  1
  SLC17A8 MUTATED    6  7
  SLC17A8 WILD-TYPE 91 63
  SLC17A8 MUTATED SLC17A8 WILD-TYPE 
               13               154 
  SLC17A8 MUTATED SLC17A8 WILD-TYPE 
                7                63 
$`SLC17A8 MUTATED`
TCGA-18-3409 TCGA-18-3416 TCGA-21-5782 TCGA-22-4613 TCGA-22-5473 TCGA-22-5491 
       79.46        28.34        31.63        11.77        63.52        56.32 
TCGA-34-5231 TCGA-34-5929 TCGA-37-3783 TCGA-37-4141 TCGA-51-4080 TCGA-60-2726 
       50.24         4.96         3.95         0.39         0.39        11.77 
TCGA-66-2787 
       40.01 

$`SLC17A8 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5784 TCGA-21-5786 
       60.89        34.78        15.55         9.30        29.85        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       19.30        31.69        64.90        14.60        44.22         0.79 
TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 TCGA-33-4532 
       71.34        11.74        30.08        62.86        16.60        82.98 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
      114.05        97.94        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5232 
       14.07        19.76         2.63        61.61        32.84        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 TCGA-39-5016 
        5.52         0.43         7.82         6.81         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 
       24.10        22.78         1.22        23.64        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
       21.07         0.99         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  SLC17A8 MUTATED SLC17A8 WILD-TYPE 
             0.39              0.10 
  SLC17A8 MUTATED SLC17A8 WILD-TYPE 
            79.46            173.79 
  SLC17A8 MUTATED SLC17A8 WILD-TYPE 
            28.34             17.42 
[1] "0.4 - 79.5 (28.3)"  "0.1 - 173.8 (17.4)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
  "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED"   "SLC17A8 MUTATED" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
  "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
  "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED"   "SLC17A8 MUTATED" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
  "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
  "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED"   "SLC17A8 MUTATED" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
  "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
[1] "hr=" "1.2"
D60V2, continuous
D60V3, binary
                   cls
clus                  0   1
  SLC17A8 MUTATED     4   9
  SLC17A8 WILD-TYPE  43 122
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC17A8 MUTATED      4    9
  SLC17A8 WILD-TYPE   43  122
        clus
vv       SLC17A8 MUTATED SLC17A8 WILD-TYPE
  FEMALE               4                43
  MALE                 9               122
D60V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  SLC17A8 MUTATED                                       2
  SLC17A8 WILD-TYPE                                     3
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  SLC17A8 MUTATED                                        0
  SLC17A8 WILD-TYPE                                      1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SLC17A8 MUTATED                                                            11
  SLC17A8 WILD-TYPE                                                         161
D60V5, multiclass
                                                             clus
vv                                                            SLC17A8 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              11
                                                             clus
vv                                                            SLC17A8 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               161
                   vv
clus                 T1  T2  T3  T4
  SLC17A8 MUTATED     6   4   2   1
  SLC17A8 WILD-TYPE  30 112  12  11
D60V6, multiclass
    clus
vv   SLC17A8 MUTATED SLC17A8 WILD-TYPE
  T1               6                30
  T2               4               112
  T3               2                12
  T4               1                11
                   vv
clus                 N0  N1  N2  N3
  SLC17A8 MUTATED     9   3   1   0
  SLC17A8 WILD-TYPE 108  36  16   5
D60V7, multiclass
    clus
vv   SLC17A8 MUTATED SLC17A8 WILD-TYPE
  N0               9               108
  N1               3                36
  N2               1                16
  N3               0                 5
                   vv
clus                 M0  M1  MX
  SLC17A8 MUTATED    12   0   0
  SLC17A8 WILD-TYPE 153   3   6
D60V8, multiclass
    clus
vv   SLC17A8 MUTATED SLC17A8 WILD-TYPE
  M0              12               153
  M1               0                 3
  MX               0                 6
                   vv
clus                 I II III+IV
  SLC17A8 MUTATED    8  2      2
  SLC17A8 WILD-TYPE 89 36     39
D60V9, multiclass
        clus
vv       SLC17A8 MUTATED SLC17A8 WILD-TYPE
  I                    8                89
  II                   2                36
  III+IV               2                39
D60V10, binary
                   cls
clus                  0   1
  SLC17A8 MUTATED     0  13
  SLC17A8 WILD-TYPE   4 161
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC17A8 MUTATED      0   13
  SLC17A8 WILD-TYPE    4  161
     clus
vv    SLC17A8 MUTATED SLC17A8 WILD-TYPE
  NO                0                 4
  YES              13               161
D60V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  SLC17A8 MUTATED                                             4
  SLC17A8 WILD-TYPE                                          90
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  SLC17A8 MUTATED                                        5              1
  SLC17A8 WILD-TYPE                                     38             27
                   vv
clus                LIFELONG NON-SMOKER
  SLC17A8 MUTATED                     2
  SLC17A8 WILD-TYPE                   6
D60V12, multiclass
                                             clus
vv                                            SLC17A8 MUTATED SLC17A8 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               4                90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    5                38
  CURRENT SMOKER                                            1                27
  LIFELONG NON-SMOKER                                       2                 6
D60V13, continuous
                   vv
clus                 R0  R1  R2  RX
  SLC17A8 MUTATED    11   0   0   0
  SLC17A8 WILD-TYPE 136   2   4  10
D60V14, multiclass
    clus
vv   SLC17A8 MUTATED SLC17A8 WILD-TYPE
  R0              11               136
  R1               0                 2
  R2               0                 4
  RX               0                10

Clustering(61) Variable = TECRL MUTATION ANALYSIS
D61V1, survival
                 sevent
clus2              0  1
  TECRL MUTATED    6  3
  TECRL WILD-TYPE 91 67
  TECRL MUTATED TECRL WILD-TYPE 
              9             158 
  TECRL MUTATED TECRL WILD-TYPE 
              3              67 
$`TECRL MUTATED`
TCGA-22-4599 TCGA-33-6737 TCGA-37-4141 TCGA-39-5024 TCGA-39-5039 TCGA-43-6143 
       38.17        19.76         0.39        70.03        17.88         7.00 
TCGA-43-6770 TCGA-60-2708 TCGA-66-2756 
        2.79        68.45         0.99 

$`TECRL WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 
        4.96         3.95         0.43         7.82         6.81         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5027 TCGA-39-5028 
       74.07        44.71        68.58        55.17        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6647 TCGA-43-6771 
       18.08        11.57        18.84         8.48         6.02         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 
       28.93         0.10         2.04         1.02        10.22        21.70 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       30.61         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
       23.64        11.77        16.96        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        2.01         0.92         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  TECRL MUTATED TECRL WILD-TYPE 
           0.39            0.10 
  TECRL MUTATED TECRL WILD-TYPE 
          70.03          173.79 
  TECRL MUTATED TECRL WILD-TYPE 
          17.88           17.52 
[1] "0.4 - 70.0 (17.9)"  "0.1 - 173.8 (17.5)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"TECRL WILD-TYPE"   "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE"   "TECRL MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"TECRL WILD-TYPE"   "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"TECRL WILD-TYPE" "TECRL WILD-TYPE"   "TECRL MUTATED" "TECRL WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE"   "TECRL MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"TECRL WILD-TYPE"   "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE"   "TECRL MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"TECRL WILD-TYPE"   "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE"   "TECRL MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"TECRL WILD-TYPE"   "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"TECRL WILD-TYPE" "TECRL WILD-TYPE"   "TECRL MUTATED" "TECRL WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE"   "TECRL MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"TECRL WILD-TYPE"   "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE"   "TECRL MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"TECRL WILD-TYPE"   "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE"   "TECRL MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"TECRL WILD-TYPE"   "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"TECRL WILD-TYPE" "TECRL WILD-TYPE"   "TECRL MUTATED" "TECRL WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE"   "TECRL MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"TECRL WILD-TYPE"   "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE"   "TECRL MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
[1] "hr=" "1.3"
D61V2, continuous
D61V3, binary
                 cls
clus                0   1
  TECRL MUTATED     5   4
  TECRL WILD-TYPE  42 127
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TECRL MUTATED      5    4
  TECRL WILD-TYPE   42  127
        clus
vv       TECRL MUTATED TECRL WILD-TYPE
  FEMALE             5              42
  MALE               4             127
D61V4, continuous
[1] "Remove cluster labels:" "TECRL MUTATED"         
clus
  TECRL MUTATED TECRL WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4601      TCGA-22-4604 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  TECRL MUTATED                                       1
  TECRL WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  TECRL MUTATED                                        0
  TECRL WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TECRL MUTATED                                                             8
  TECRL WILD-TYPE                                                         164
D61V5, multiclass
                                                             clus
vv                                                            TECRL MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             8
                                                             clus
vv                                                            TECRL WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             164
                 vv
clus               T1  T2  T3  T4
  TECRL MUTATED     1   7   0   1
  TECRL WILD-TYPE  35 109  14  11
D61V6, multiclass
    clus
vv   TECRL MUTATED TECRL WILD-TYPE
  T1             1              35
  T2             7             109
  T3             0              14
  T4             1              11
                 vv
clus               N0  N1  N2  N3
  TECRL MUTATED     6   1   2   0
  TECRL WILD-TYPE 111  38  15   5
D61V7, multiclass
    clus
vv   TECRL MUTATED TECRL WILD-TYPE
  N0             6             111
  N1             1              38
  N2             2              15
  N3             0               5
                 vv
clus               M0  M1  MX
  TECRL MUTATED     8   0   1
  TECRL WILD-TYPE 157   3   5
D61V8, multiclass
    clus
vv   TECRL MUTATED TECRL WILD-TYPE
  M0             8             157
  M1             0               3
  MX             1               5
                 vv
clus               I II III+IV
  TECRL MUTATED    4  2      3
  TECRL WILD-TYPE 93 36     38
D61V9, multiclass
        clus
vv       TECRL MUTATED TECRL WILD-TYPE
  I                  4              93
  II                 2              36
  III+IV             3              38
D61V10, binary
                 cls
clus                0   1
  TECRL MUTATED     0   9
  TECRL WILD-TYPE   4 165
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TECRL MUTATED      0    9
  TECRL WILD-TYPE    4  165
     clus
vv    TECRL MUTATED TECRL WILD-TYPE
  NO              0               4
  YES             9             165
D61V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  TECRL MUTATED                                             5
  TECRL WILD-TYPE                                          89
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  TECRL MUTATED                                        1              2
  TECRL WILD-TYPE                                     42             26
                 vv
clus              LIFELONG NON-SMOKER
  TECRL MUTATED                     1
  TECRL WILD-TYPE                   7
D61V12, multiclass
                                             clus
vv                                            TECRL MUTATED TECRL WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              42
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     1               7
D61V13, continuous
                 vv
clus               R0  R1  R2  RX
  TECRL MUTATED     6   0   0   2
  TECRL WILD-TYPE 141   2   4   8
D61V14, multiclass
    clus
vv   TECRL MUTATED TECRL WILD-TYPE
  R0             6             141
  R1             0               2
  R2             0               4
  RX             2               8

Clustering(62) Variable = OR4D5 MUTATION ANALYSIS
D62V1, survival
                 sevent
clus2              0  1
  OR4D5 MUTATED    6  2
  OR4D5 WILD-TYPE 91 68
  OR4D5 MUTATED OR4D5 WILD-TYPE 
              8             159 
  OR4D5 MUTATED OR4D5 WILD-TYPE 
              2              68 
$`OR4D5 MUTATED`
TCGA-18-3409 TCGA-18-3416 TCGA-21-5786 TCGA-22-4613 TCGA-34-2596 TCGA-39-5016 
       79.46        28.34        21.57        11.77         2.63        74.07 
TCGA-43-3394 TCGA-66-2754 
       11.57         2.01 

$`OR4D5 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       19.30        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
        0.79        71.34        11.74        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2600 TCGA-34-2608 
      103.53       141.34        14.07        19.76        61.61        32.84 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         4.96         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5019 TCGA-39-5021 
        7.82         6.81         0.39         3.39        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
       27.35        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       18.84         8.48         7.00         6.02         2.79         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 
       28.93         0.10         2.04         1.02        10.22        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        0.99         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  OR4D5 MUTATED OR4D5 WILD-TYPE 
           2.01            0.10 
  OR4D5 MUTATED OR4D5 WILD-TYPE 
          79.46          173.79 
  OR4D5 MUTATED OR4D5 WILD-TYPE 
          16.67           17.88 
[1] "2.0 - 79.5 (16.7)"  "0.1 - 173.8 (17.9)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE"   "OR4D5 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR4D5 WILD-TYPE"   "OR4D5 MUTATED" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE"   "OR4D5 MUTATED" "OR4D5 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "OR4D5 MUTATED" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE"   "OR4D5 MUTATED" "OR4D5 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR4D5 WILD-TYPE"   "OR4D5 MUTATED" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
  "OR4D5 MUTATED" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE"   "OR4D5 MUTATED" "OR4D5 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE"   "OR4D5 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR4D5 WILD-TYPE"   "OR4D5 MUTATED" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE"   "OR4D5 MUTATED" "OR4D5 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "OR4D5 MUTATED" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE"   "OR4D5 MUTATED" "OR4D5 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR4D5 WILD-TYPE"   "OR4D5 MUTATED" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
  "OR4D5 MUTATED" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE"   "OR4D5 MUTATED" "OR4D5 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE"   "OR4D5 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR4D5 WILD-TYPE"   "OR4D5 MUTATED" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE"   "OR4D5 MUTATED" "OR4D5 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "OR4D5 MUTATED" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE"   "OR4D5 MUTATED" "OR4D5 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR4D5 WILD-TYPE"   "OR4D5 MUTATED" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
  "OR4D5 MUTATED" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE"   "OR4D5 MUTATED" "OR4D5 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
[1] "hr=" "2"  
D62V2, continuous
D62V3, binary
                 cls
clus                0   1
  OR4D5 MUTATED     1   8
  OR4D5 WILD-TYPE  46 123
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4D5 MUTATED      1    8
  OR4D5 WILD-TYPE   46  123
        clus
vv       OR4D5 MUTATED OR4D5 WILD-TYPE
  FEMALE             1              46
  MALE               8             123
D62V4, continuous
[1] "Remove cluster labels:" "OR4D5 MUTATED"         
clus
  OR4D5 MUTATED OR4D5 WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-4604      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR4D5 MUTATED                                       2
  OR4D5 WILD-TYPE                                     3
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR4D5 MUTATED                                        0
  OR4D5 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR4D5 MUTATED                                                             7
  OR4D5 WILD-TYPE                                                         165
D62V5, multiclass
                                                             clus
vv                                                            OR4D5 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             7
                                                             clus
vv                                                            OR4D5 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             165
                 vv
clus               T1  T2  T3  T4
  OR4D5 MUTATED     2   7   0   0
  OR4D5 WILD-TYPE  34 109  14  12
D62V6, multiclass
    clus
vv   OR4D5 MUTATED OR4D5 WILD-TYPE
  T1             2              34
  T2             7             109
  T3             0              14
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  OR4D5 MUTATED     4   4   1   0
  OR4D5 WILD-TYPE 113  35  16   5
D62V7, multiclass
    clus
vv   OR4D5 MUTATED OR4D5 WILD-TYPE
  N0             4             113
  N1             4              35
  N2             1              16
  N3             0               5
                 vv
clus               M0  M1  MX
  OR4D5 MUTATED     9   0   0
  OR4D5 WILD-TYPE 156   3   6
D62V8, multiclass
    clus
vv   OR4D5 MUTATED OR4D5 WILD-TYPE
  M0             9             156
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  OR4D5 MUTATED    3  4      1
  OR4D5 WILD-TYPE 94 34     40
D62V9, multiclass
        clus
vv       OR4D5 MUTATED OR4D5 WILD-TYPE
  I                  3              94
  II                 4              34
  III+IV             1              40
D62V10, binary
                 cls
clus                0   1
  OR4D5 MUTATED     0   9
  OR4D5 WILD-TYPE   4 165
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4D5 MUTATED      0    9
  OR4D5 WILD-TYPE    4  165
     clus
vv    OR4D5 MUTATED OR4D5 WILD-TYPE
  NO              0               4
  YES             9             165
D62V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR4D5 MUTATED                                             3
  OR4D5 WILD-TYPE                                          91
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR4D5 MUTATED                                        4              2
  OR4D5 WILD-TYPE                                     39             26
                 vv
clus              LIFELONG NON-SMOKER
  OR4D5 MUTATED                     0
  OR4D5 WILD-TYPE                   8
D62V12, multiclass
                                             clus
vv                                            OR4D5 MUTATED OR4D5 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  4              39
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0               8
D62V13, continuous
                 vv
clus               R0  R1  R2  RX
  OR4D5 MUTATED     9   0   0   0
  OR4D5 WILD-TYPE 138   2   4  10
D62V14, multiclass
    clus
vv   OR4D5 MUTATED OR4D5 WILD-TYPE
  R0             9             138
  R1             0               2
  R2             0               4
  RX             0              10

Clustering(63) Variable = POTEG MUTATION ANALYSIS
D63V1, survival
                 sevent
clus2              0  1
  POTEG MUTATED    5  4
  POTEG WILD-TYPE 92 66
  POTEG MUTATED POTEG WILD-TYPE 
              9             158 
  POTEG MUTATED POTEG WILD-TYPE 
              4              66 
$`POTEG MUTATED`
TCGA-18-3416 TCGA-21-1070 TCGA-21-5782 TCGA-22-5480 TCGA-39-5016 TCGA-39-5019 
       28.34       115.59        31.63        71.34        74.07        44.71 
TCGA-39-5028 TCGA-60-2726 TCGA-66-2756 
        1.71        11.77         0.99 

$`POTEG WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        13.02        59.51        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 
        6.15         2.79        90.51         3.02        27.16        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5784 TCGA-21-5786 
       60.89        34.78        15.55         9.30        29.85        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       44.22         0.79        11.74        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5021 
        0.43         7.82         6.81         0.39         3.39        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       55.17        70.03        60.76        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       15.58        35.64         0.79        17.88        18.08        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       18.84         8.48         7.00         6.02         2.79         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 
       28.93         0.10         2.04         1.02        10.22        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
        1.22        23.64        16.96        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        2.01         0.92         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  POTEG MUTATED POTEG WILD-TYPE 
           0.99            0.10 
  POTEG MUTATED POTEG WILD-TYPE 
         115.59          173.79 
  POTEG MUTATED POTEG WILD-TYPE 
          31.63           16.78 
[1] "1.0 - 115.6 (31.6)" "0.1 - 173.8 (16.8)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"POTEG WILD-TYPE"   "POTEG MUTATED" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" "POTEG WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "POTEG MUTATED" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"POTEG WILD-TYPE"   "POTEG MUTATED"   "POTEG MUTATED" "POTEG WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"POTEG WILD-TYPE"   "POTEG MUTATED" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "POTEG MUTATED" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"POTEG WILD-TYPE"   "POTEG MUTATED" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" "POTEG WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "POTEG MUTATED" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"POTEG WILD-TYPE"   "POTEG MUTATED"   "POTEG MUTATED" "POTEG WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"POTEG WILD-TYPE"   "POTEG MUTATED" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "POTEG MUTATED" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"POTEG WILD-TYPE"   "POTEG MUTATED" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" "POTEG WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "POTEG MUTATED" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"POTEG WILD-TYPE"   "POTEG MUTATED"   "POTEG MUTATED" "POTEG WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"POTEG WILD-TYPE"   "POTEG MUTATED" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "POTEG MUTATED" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
[1] "hr=" "1.6"
D63V2, continuous
D63V3, binary
                 cls
clus                0   1
  POTEG MUTATED     3   7
  POTEG WILD-TYPE  44 124
[1] "tbl2"
                 cls
clus              [,1] [,2]
  POTEG MUTATED      3    7
  POTEG WILD-TYPE   44  124
        clus
vv       POTEG MUTATED POTEG WILD-TYPE
  FEMALE             3              44
  MALE               7             124
D63V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  POTEG MUTATED                                       1
  POTEG WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  POTEG MUTATED                                        0
  POTEG WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  POTEG MUTATED                                                             9
  POTEG WILD-TYPE                                                         163
D63V5, multiclass
                                                             clus
vv                                                            POTEG MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             9
                                                             clus
vv                                                            POTEG WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             163
                 vv
clus               T1  T2  T3  T4
  POTEG MUTATED     1   5   1   3
  POTEG WILD-TYPE  35 111  13   9
D63V6, multiclass
    clus
vv   POTEG MUTATED POTEG WILD-TYPE
  T1             1              35
  T2             5             111
  T3             1              13
  T4             3               9
                 vv
clus               N0  N1  N2  N3
  POTEG MUTATED     6   4   0   0
  POTEG WILD-TYPE 111  35  17   5
D63V7, multiclass
    clus
vv   POTEG MUTATED POTEG WILD-TYPE
  N0             6             111
  N1             4              35
  N2             0              17
  N3             0               5
                 vv
clus               M0  M1  MX
  POTEG MUTATED    10   0   0
  POTEG WILD-TYPE 155   3   6
D63V8, multiclass
    clus
vv   POTEG MUTATED POTEG WILD-TYPE
  M0            10             155
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  POTEG MUTATED    3  4      3
  POTEG WILD-TYPE 94 34     38
D63V9, multiclass
        clus
vv       POTEG MUTATED POTEG WILD-TYPE
  I                  3              94
  II                 4              34
  III+IV             3              38
D63V10, binary
                 cls
clus                0   1
  POTEG MUTATED     0  10
  POTEG WILD-TYPE   4 164
[1] "tbl2"
                 cls
clus              [,1] [,2]
  POTEG MUTATED      0   10
  POTEG WILD-TYPE    4  164
     clus
vv    POTEG MUTATED POTEG WILD-TYPE
  NO              0               4
  YES            10             164
D63V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  POTEG MUTATED                                             7
  POTEG WILD-TYPE                                          87
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  POTEG MUTATED                                        3              0
  POTEG WILD-TYPE                                     40             28
                 vv
clus              LIFELONG NON-SMOKER
  POTEG MUTATED                     0
  POTEG WILD-TYPE                   8
D63V12, multiclass
                                             clus
vv                                            POTEG MUTATED POTEG WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             7              87
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              40
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     0               8
D63V13, continuous
                 vv
clus               R0  R1  R2  RX
  POTEG MUTATED     9   1   0   0
  POTEG WILD-TYPE 138   1   4  10
D63V14, multiclass
    clus
vv   POTEG MUTATED POTEG WILD-TYPE
  R0             9             138
  R1             1               1
  R2             0               4
  RX             0              10

Clustering(64) Variable = TEX13A MUTATION ANALYSIS
D64V1, survival
                  sevent
clus2               0  1
  TEX13A MUTATED    5  3
  TEX13A WILD-TYPE 92 67
  TEX13A MUTATED TEX13A WILD-TYPE 
               8              159 
  TEX13A MUTATED TEX13A WILD-TYPE 
               3               67 
$`TEX13A MUTATED`
TCGA-21-1070 TCGA-22-1016 TCGA-22-4613 TCGA-43-3394 TCGA-43-6770 TCGA-66-2767 
      115.59        27.02        11.77        11.57         2.79         2.01 
TCGA-66-2791 TCGA-66-2795 
        5.03         4.01 

$`TEX13A WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       14.10        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       13.12        19.30        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
        0.79        17.88        18.08        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        6.02         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       40.01        22.98         4.04        30.02        10.06        54.08 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  TEX13A MUTATED TEX13A WILD-TYPE 
            2.01             0.10 
  TEX13A MUTATED TEX13A WILD-TYPE 
          115.59           173.79 
  TEX13A MUTATED TEX13A WILD-TYPE 
            8.30            18.84 
[1] "2.0 - 115.6 (8.3)"  "0.1 - 173.8 (18.8)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE"   "TEX13A MUTATED" "TEX13A WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "TEX13A MUTATED" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "TEX13A MUTATED" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
  "TEX13A MUTATED" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"TEX13A WILD-TYPE"   "TEX13A MUTATED" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE"   "TEX13A MUTATED" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE"   "TEX13A MUTATED" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE"   "TEX13A MUTATED" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE"   "TEX13A MUTATED" "TEX13A WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "TEX13A MUTATED" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "TEX13A MUTATED" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
  "TEX13A MUTATED" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"TEX13A WILD-TYPE"   "TEX13A MUTATED" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE"   "TEX13A MUTATED" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE"   "TEX13A MUTATED" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE"   "TEX13A MUTATED" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE"   "TEX13A MUTATED" "TEX13A WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "TEX13A MUTATED" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "TEX13A MUTATED" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
  "TEX13A MUTATED" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"TEX13A WILD-TYPE"   "TEX13A MUTATED" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE"   "TEX13A MUTATED" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE"   "TEX13A MUTATED" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE"   "TEX13A MUTATED" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
[1] "hr=" "1.1"
D64V2, continuous
D64V3, binary
                  cls
clus                 0   1
  TEX13A MUTATED     3   5
  TEX13A WILD-TYPE  44 126
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TEX13A MUTATED      3    5
  TEX13A WILD-TYPE   44  126
        clus
vv       TEX13A MUTATED TEX13A WILD-TYPE
  FEMALE              3               44
  MALE                5              126
D64V4, continuous
[1] "Remove cluster labels:" "TEX13A MUTATED"        
clus
  TEX13A MUTATED TEX13A WILD-TYPE 
               1               35 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4595       TCGA-22-4599       TCGA-22-4601 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-4604       TCGA-22-5472       TCGA-22-5473       TCGA-22-5474 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5482 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-34-5234       TCGA-37-4133       TCGA-37-4135       TCGA-37-5819 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-60-2698       TCGA-60-2712       TCGA-60-2715       TCGA-60-2725 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-60-2726       TCGA-70-6722       TCGA-70-6723 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  TEX13A MUTATED                                       0
  TEX13A WILD-TYPE                                     5
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  TEX13A MUTATED                                        0
  TEX13A WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TEX13A MUTATED                                                             8
  TEX13A WILD-TYPE                                                         164
D64V5, multiclass
                                                             clus
vv                                                            TEX13A MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              8
                                                             clus
vv                                                            TEX13A WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              164
                  vv
clus                T1  T2  T3  T4
  TEX13A MUTATED     1   5   1   1
  TEX13A WILD-TYPE  35 111  13  11
D64V6, multiclass
    clus
vv   TEX13A MUTATED TEX13A WILD-TYPE
  T1              1               35
  T2              5              111
  T3              1               13
  T4              1               11
                  vv
clus                N0  N1  N2  N3
  TEX13A MUTATED     5   1   0   2
  TEX13A WILD-TYPE 112  38  17   3
D64V7, multiclass
    clus
vv   TEX13A MUTATED TEX13A WILD-TYPE
  N0              5              112
  N1              1               38
  N2              0               17
  N3              2                3
                  vv
clus                M0  M1  MX
  TEX13A MUTATED     7   0   1
  TEX13A WILD-TYPE 158   3   5
D64V8, multiclass
    clus
vv   TEX13A MUTATED TEX13A WILD-TYPE
  M0              7              158
  M1              0                3
  MX              1                5
                  vv
clus                I II III+IV
  TEX13A MUTATED    4  0      4
  TEX13A WILD-TYPE 93 38     37
D64V9, multiclass
        clus
vv       TEX13A MUTATED TEX13A WILD-TYPE
  I                   4               93
  II                  0               38
  III+IV              4               37
D64V10, binary
                  cls
clus                 0   1
  TEX13A MUTATED     0   8
  TEX13A WILD-TYPE   4 166
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TEX13A MUTATED      0    8
  TEX13A WILD-TYPE    4  166
     clus
vv    TEX13A MUTATED TEX13A WILD-TYPE
  NO               0                4
  YES              8              166
D64V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  TEX13A MUTATED                                             4
  TEX13A WILD-TYPE                                          90
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  TEX13A MUTATED                                        2              2
  TEX13A WILD-TYPE                                     41             26
                  vv
clus               LIFELONG NON-SMOKER
  TEX13A MUTATED                     0
  TEX13A WILD-TYPE                   8
D64V12, multiclass
                                             clus
vv                                            TEX13A MUTATED TEX13A WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              4               90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               41
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0                8
D64V13, continuous
                  vv
clus                R0  R1  R2  RX
  TEX13A MUTATED     6   1   0   1
  TEX13A WILD-TYPE 141   1   4   9
D64V14, multiclass
    clus
vv   TEX13A MUTATED TEX13A WILD-TYPE
  R0              6              141
  R1              1                1
  R2              0                4
  RX              1                9

Clustering(65) Variable = HIST2H2BE MUTATION ANALYSIS
D65V1, survival
                     sevent
clus2                  0  1
  HIST2H2BE MUTATED    1  2
  HIST2H2BE WILD-TYPE 96 68
  HIST2H2BE MUTATED HIST2H2BE WILD-TYPE 
                  3                 164 
  HIST2H2BE MUTATED HIST2H2BE WILD-TYPE 
                  2                  68 
$`HIST2H2BE MUTATED`
TCGA-18-3414 TCGA-22-5477 TCGA-60-2723 
       13.02        44.22        22.78 

$`HIST2H2BE WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       63.52        14.60         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
        8.48         7.00         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 
        0.95         0.59         0.39         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 
        0.10         2.04         1.02        10.22        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2724 TCGA-60-2725 
       30.61         3.16        26.07        24.10         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  HIST2H2BE MUTATED HIST2H2BE WILD-TYPE 
              13.02                0.10 
  HIST2H2BE MUTATED HIST2H2BE WILD-TYPE 
              44.22              173.79 
  HIST2H2BE MUTATED HIST2H2BE WILD-TYPE 
              22.78               17.42 
[1] "13.0 - 44.2 (22.8)" "0.1 - 173.8 (17.4)"
         TCGA-18-3406          TCGA-18-3407          TCGA-18-3408 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-18-3409          TCGA-18-3410          TCGA-18-3411 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-18-3412          TCGA-18-3414          TCGA-18-3415 
"HIST2H2BE WILD-TYPE"   "HIST2H2BE MUTATED" "HIST2H2BE WILD-TYPE" 
         TCGA-18-3416          TCGA-18-3417          TCGA-18-3419 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-18-3421          TCGA-18-4083          TCGA-18-4086 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-18-4721          TCGA-18-5592          TCGA-18-5595 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-21-1070          TCGA-21-1071          TCGA-21-1076 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-21-1077          TCGA-21-1078          TCGA-21-1081 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-21-5782          TCGA-21-5784          TCGA-21-5786 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-21-5787          TCGA-22-0944          TCGA-22-1002 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-1011          TCGA-22-1012          TCGA-22-1016 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-4591          TCGA-22-4593          TCGA-22-4595 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-4599          TCGA-22-4601          TCGA-22-4604 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-4607          TCGA-22-4613          TCGA-22-5471 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5472          TCGA-22-5473          TCGA-22-5474 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5477          TCGA-22-5478          TCGA-22-5480 
  "HIST2H2BE MUTATED" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5482          TCGA-22-5485          TCGA-22-5489 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5491          TCGA-22-5492          TCGA-33-4532 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-33-4533          TCGA-33-4538          TCGA-33-4547 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-33-4566          TCGA-33-4582          TCGA-33-4583 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-33-4586          TCGA-33-6737          TCGA-34-2596 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-2600          TCGA-34-2608          TCGA-34-5231 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-5232          TCGA-34-5234          TCGA-34-5236 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-5239          TCGA-34-5240          TCGA-34-5241 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-5927          TCGA-34-5928          TCGA-34-5929 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-37-3783          TCGA-37-3789          TCGA-37-4133 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-37-4135          TCGA-37-4141          TCGA-37-5819 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5016          TCGA-39-5019          TCGA-39-5021 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5022          TCGA-39-5024          TCGA-39-5027 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5028          TCGA-39-5029          TCGA-39-5030 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5031          TCGA-39-5035          TCGA-39-5036 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5037          TCGA-39-5039          TCGA-43-2578 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-43-3394          TCGA-43-3920          TCGA-43-5668 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-43-6143          TCGA-43-6647          TCGA-43-6770 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-43-6771          TCGA-46-3768          TCGA-46-6025 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-46-6026          TCGA-51-4079          TCGA-51-4080 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-51-4081          TCGA-56-1622          TCGA-56-5897 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-56-6545          TCGA-56-6546          TCGA-60-2698 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2707          TCGA-60-2708          TCGA-60-2709 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2710          TCGA-60-2711          TCGA-60-2712 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2713          TCGA-60-2715          TCGA-60-2719 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2720          TCGA-60-2721          TCGA-60-2722 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2723          TCGA-60-2724          TCGA-60-2725 
  "HIST2H2BE MUTATED" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2726          TCGA-66-2727          TCGA-66-2734 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2742          TCGA-66-2744          TCGA-66-2754 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2755          TCGA-66-2756          TCGA-66-2757 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2758          TCGA-66-2759          TCGA-66-2763 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2765          TCGA-66-2766          TCGA-66-2767 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2768          TCGA-66-2770          TCGA-66-2771 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2773          TCGA-66-2777          TCGA-66-2778 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2780          TCGA-66-2781          TCGA-66-2782 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2783          TCGA-66-2785          TCGA-66-2786 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2787          TCGA-66-2788          TCGA-66-2789 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2791          TCGA-66-2792          TCGA-66-2793 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2794          TCGA-66-2795          TCGA-66-2800 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-85-6560          TCGA-85-6561 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-18-3406          TCGA-18-3407          TCGA-18-3408 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-18-3409          TCGA-18-3410          TCGA-18-3411 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-18-3412          TCGA-18-3414          TCGA-18-3415 
"HIST2H2BE WILD-TYPE"   "HIST2H2BE MUTATED" "HIST2H2BE WILD-TYPE" 
         TCGA-18-3416          TCGA-18-3417          TCGA-18-3419 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-18-3421          TCGA-18-4083          TCGA-18-4086 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-18-4721          TCGA-18-5592          TCGA-18-5595 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-21-1070          TCGA-21-1071          TCGA-21-1076 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-21-1077          TCGA-21-1078          TCGA-21-1081 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-21-5782          TCGA-21-5784          TCGA-21-5786 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-21-5787          TCGA-22-0944          TCGA-22-1002 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-1011          TCGA-22-1012          TCGA-22-1016 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-4591          TCGA-22-4593          TCGA-22-4595 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-4599          TCGA-22-4601          TCGA-22-4604 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-4607          TCGA-22-4613          TCGA-22-5471 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5472          TCGA-22-5473          TCGA-22-5474 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5477          TCGA-22-5478          TCGA-22-5480 
  "HIST2H2BE MUTATED" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5482          TCGA-22-5485          TCGA-22-5489 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5491          TCGA-22-5492          TCGA-33-4532 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-33-4533          TCGA-33-4538          TCGA-33-4547 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-33-4566          TCGA-33-4582          TCGA-33-4583 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-33-4586          TCGA-33-6737          TCGA-34-2596 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-2600          TCGA-34-2608          TCGA-34-5231 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-5232          TCGA-34-5234          TCGA-34-5236 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-5239          TCGA-34-5240          TCGA-34-5241 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-5927          TCGA-34-5928          TCGA-34-5929 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-37-3783          TCGA-37-3789          TCGA-37-4133 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-37-4135          TCGA-37-4141          TCGA-37-5819 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5016          TCGA-39-5019          TCGA-39-5021 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5022          TCGA-39-5024          TCGA-39-5027 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5028          TCGA-39-5029          TCGA-39-5030 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5031          TCGA-39-5035          TCGA-39-5036 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5037          TCGA-39-5039          TCGA-43-2578 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-43-3394          TCGA-43-3920          TCGA-43-5668 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-43-6143          TCGA-43-6647          TCGA-43-6770 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-43-6771          TCGA-46-3768          TCGA-46-6025 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-46-6026          TCGA-51-4079          TCGA-51-4080 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-51-4081          TCGA-56-1622          TCGA-56-5897 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-56-6545          TCGA-56-6546          TCGA-60-2698 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2707          TCGA-60-2708          TCGA-60-2709 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2710          TCGA-60-2711          TCGA-60-2712 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2713          TCGA-60-2715          TCGA-60-2719 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2720          TCGA-60-2721          TCGA-60-2722 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2723          TCGA-60-2724          TCGA-60-2725 
  "HIST2H2BE MUTATED" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2726          TCGA-66-2727          TCGA-66-2734 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2742          TCGA-66-2744          TCGA-66-2754 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2755          TCGA-66-2756          TCGA-66-2757 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2758          TCGA-66-2759          TCGA-66-2763 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2765          TCGA-66-2766          TCGA-66-2767 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2768          TCGA-66-2770          TCGA-66-2771 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2773          TCGA-66-2777          TCGA-66-2778 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2780          TCGA-66-2781          TCGA-66-2782 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2783          TCGA-66-2785          TCGA-66-2786 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2787          TCGA-66-2788          TCGA-66-2789 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2791          TCGA-66-2792          TCGA-66-2793 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2794          TCGA-66-2795          TCGA-66-2800 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-85-6560          TCGA-85-6561 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-18-3406          TCGA-18-3407          TCGA-18-3408 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-18-3409          TCGA-18-3410          TCGA-18-3411 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-18-3412          TCGA-18-3414          TCGA-18-3415 
"HIST2H2BE WILD-TYPE"   "HIST2H2BE MUTATED" "HIST2H2BE WILD-TYPE" 
         TCGA-18-3416          TCGA-18-3417          TCGA-18-3419 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-18-3421          TCGA-18-4083          TCGA-18-4086 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-18-4721          TCGA-18-5592          TCGA-18-5595 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-21-1070          TCGA-21-1071          TCGA-21-1076 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-21-1077          TCGA-21-1078          TCGA-21-1081 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-21-5782          TCGA-21-5784          TCGA-21-5786 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-21-5787          TCGA-22-0944          TCGA-22-1002 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-1011          TCGA-22-1012          TCGA-22-1016 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-4591          TCGA-22-4593          TCGA-22-4595 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-4599          TCGA-22-4601          TCGA-22-4604 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-4607          TCGA-22-4613          TCGA-22-5471 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5472          TCGA-22-5473          TCGA-22-5474 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5477          TCGA-22-5478          TCGA-22-5480 
  "HIST2H2BE MUTATED" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5482          TCGA-22-5485          TCGA-22-5489 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5491          TCGA-22-5492          TCGA-33-4532 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-33-4533          TCGA-33-4538          TCGA-33-4547 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-33-4566          TCGA-33-4582          TCGA-33-4583 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-33-4586          TCGA-33-6737          TCGA-34-2596 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-2600          TCGA-34-2608          TCGA-34-5231 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-5232          TCGA-34-5234          TCGA-34-5236 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-5239          TCGA-34-5240          TCGA-34-5241 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-5927          TCGA-34-5928          TCGA-34-5929 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-37-3783          TCGA-37-3789          TCGA-37-4133 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-37-4135          TCGA-37-4141          TCGA-37-5819 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5016          TCGA-39-5019          TCGA-39-5021 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5022          TCGA-39-5024          TCGA-39-5027 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5028          TCGA-39-5029          TCGA-39-5030 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5031          TCGA-39-5035          TCGA-39-5036 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5037          TCGA-39-5039          TCGA-43-2578 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-43-3394          TCGA-43-3920          TCGA-43-5668 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-43-6143          TCGA-43-6647          TCGA-43-6770 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-43-6771          TCGA-46-3768          TCGA-46-6025 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-46-6026          TCGA-51-4079          TCGA-51-4080 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-51-4081          TCGA-56-1622          TCGA-56-5897 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-56-6545          TCGA-56-6546          TCGA-60-2698 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2707          TCGA-60-2708          TCGA-60-2709 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2710          TCGA-60-2711          TCGA-60-2712 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2713          TCGA-60-2715          TCGA-60-2719 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2720          TCGA-60-2721          TCGA-60-2722 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2723          TCGA-60-2724          TCGA-60-2725 
  "HIST2H2BE MUTATED" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2726          TCGA-66-2727          TCGA-66-2734 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2742          TCGA-66-2744          TCGA-66-2754 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2755          TCGA-66-2756          TCGA-66-2757 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2758          TCGA-66-2759          TCGA-66-2763 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2765          TCGA-66-2766          TCGA-66-2767 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2768          TCGA-66-2770          TCGA-66-2771 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2773          TCGA-66-2777          TCGA-66-2778 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2780          TCGA-66-2781          TCGA-66-2782 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2783          TCGA-66-2785          TCGA-66-2786 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2787          TCGA-66-2788          TCGA-66-2789 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2791          TCGA-66-2792          TCGA-66-2793 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2794          TCGA-66-2795          TCGA-66-2800 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-85-6560          TCGA-85-6561 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
[1] "hr=" "1.4"
D65V2, continuous
D65V3, binary
                     cls
clus                    0   1
  HIST2H2BE MUTATED     1   2
  HIST2H2BE WILD-TYPE  46 129
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  HIST2H2BE MUTATED      1    2
  HIST2H2BE WILD-TYPE   46  129
        clus
vv       HIST2H2BE MUTATED HIST2H2BE WILD-TYPE
  FEMALE                 1                  46
  MALE                   2                 129
D65V4, continuous
[1] "Remove cluster labels:" "HIST2H2BE MUTATED"     
clus
  HIST2H2BE MUTATED HIST2H2BE WILD-TYPE 
                  2                  34 
         TCGA-18-3406          TCGA-18-3407          TCGA-18-3410 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-18-3419          TCGA-21-5782          TCGA-21-5787 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-4591          TCGA-22-4593          TCGA-22-4595 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-4599          TCGA-22-4601          TCGA-22-4604 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-4613          TCGA-22-5472          TCGA-22-5473 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5474          TCGA-22-5478          TCGA-22-5480 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5482          TCGA-22-5485          TCGA-22-5489 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5491          TCGA-22-5492          TCGA-34-5234 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-37-4133          TCGA-37-4135          TCGA-37-5819 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2698          TCGA-60-2712          TCGA-60-2715 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2725          TCGA-60-2726          TCGA-70-6722 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-70-6723 
"HIST2H2BE WILD-TYPE" 
                     vv
clus                  LUNG BASALOID SQUAMOUS CELL CARCINOMA
  HIST2H2BE MUTATED                                       0
  HIST2H2BE WILD-TYPE                                     5
                     vv
clus                  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  HIST2H2BE MUTATED                                        0
  HIST2H2BE WILD-TYPE                                      1
                     vv
clus                  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  HIST2H2BE MUTATED                                                             3
  HIST2H2BE WILD-TYPE                                                         169
D65V5, multiclass
                                                             clus
vv                                                            HIST2H2BE MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                 3
                                                             clus
vv                                                            HIST2H2BE WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                         5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                        1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                 169
                     vv
clus                   T1  T2  T3  T4
  HIST2H2BE MUTATED     1   1   0   1
  HIST2H2BE WILD-TYPE  35 115  14  11
D65V6, multiclass
    clus
vv   HIST2H2BE MUTATED HIST2H2BE WILD-TYPE
  T1                 1                  35
  T2                 1                 115
  T3                 0                  14
  T4                 1                  11
                     vv
clus                   N0  N1  N2  N3
  HIST2H2BE MUTATED     2   1   0   0
  HIST2H2BE WILD-TYPE 115  38  17   5
D65V7, multiclass
    clus
vv   HIST2H2BE MUTATED HIST2H2BE WILD-TYPE
  N0                 2                 115
  N1                 1                  38
  N2                 0                  17
  N3                 0                   5
                     vv
clus                   M0  M1  MX
  HIST2H2BE MUTATED     2   1   0
  HIST2H2BE WILD-TYPE 163   2   6
D65V8, multiclass
    clus
vv   HIST2H2BE MUTATED HIST2H2BE WILD-TYPE
  M0                 2                 163
  M1                 1                   2
  MX                 0                   6
                     vv
clus                   I II III+IV
  HIST2H2BE MUTATED    2  0      1
  HIST2H2BE WILD-TYPE 95 38     40
D65V9, multiclass
        clus
vv       HIST2H2BE MUTATED HIST2H2BE WILD-TYPE
  I                      2                  95
  II                     0                  38
  III+IV                 1                  40
D65V10, binary
                     cls
clus                    0   1
  HIST2H2BE MUTATED     0   3
  HIST2H2BE WILD-TYPE   4 171
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  HIST2H2BE MUTATED      0    3
  HIST2H2BE WILD-TYPE    4  171
     clus
vv    HIST2H2BE MUTATED HIST2H2BE WILD-TYPE
  NO                  0                   4
  YES                 3                 171
D65V11, continuous
                     vv
clus                  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  HIST2H2BE MUTATED                                             2
  HIST2H2BE WILD-TYPE                                          92
                     vv
clus                  CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  HIST2H2BE MUTATED                                        0              1
  HIST2H2BE WILD-TYPE                                     43             27
                     vv
clus                  LIFELONG NON-SMOKER
  HIST2H2BE MUTATED                     0
  HIST2H2BE WILD-TYPE                   8
D65V12, multiclass
                                             clus
vv                                            HIST2H2BE MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 2
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      0
  CURRENT SMOKER                                              1
  LIFELONG NON-SMOKER                                         0
                                             clus
vv                                            HIST2H2BE WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                  92
  CURRENT REFORMED SMOKER FOR > 15 YEARS                       43
  CURRENT SMOKER                                               27
  LIFELONG NON-SMOKER                                           8
D65V13, continuous
[1] "Remove cluster labels:" "HIST2H2BE MUTATED"     
clus
  HIST2H2BE MUTATED HIST2H2BE WILD-TYPE 
                  1                 104 
         TCGA-18-3406          TCGA-18-3417          TCGA-21-1078 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-21-5782          TCGA-21-5786          TCGA-21-5787 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-0944          TCGA-22-1002          TCGA-22-1011 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-1012          TCGA-22-1016          TCGA-22-4591 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-4593          TCGA-22-4607          TCGA-22-4613 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5472          TCGA-22-5473          TCGA-22-5474 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5480          TCGA-22-5482          TCGA-22-5492 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-33-4533          TCGA-33-4547          TCGA-33-4582 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-33-4583          TCGA-33-4586          TCGA-34-5240 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-5241          TCGA-37-4133          TCGA-37-4135 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-37-5819          TCGA-39-5021          TCGA-39-5022 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5024          TCGA-39-5027          TCGA-39-5028 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5029          TCGA-39-5030          TCGA-39-5031 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5035          TCGA-39-5036          TCGA-39-5037 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5039          TCGA-43-2578          TCGA-43-3394 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-43-3920          TCGA-43-6143          TCGA-43-6647 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-43-6770          TCGA-43-6771          TCGA-56-1622 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-56-5898          TCGA-56-6545          TCGA-56-6546 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2707          TCGA-60-2708          TCGA-60-2709 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2710          TCGA-60-2711          TCGA-60-2712 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2713          TCGA-60-2715          TCGA-60-2719 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2720          TCGA-60-2721          TCGA-60-2724 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2725          TCGA-60-2726          TCGA-63-6202 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2727          TCGA-66-2734          TCGA-66-2742 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2744          TCGA-66-2754          TCGA-66-2755 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2756          TCGA-66-2757          TCGA-66-2758 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2759          TCGA-66-2763          TCGA-66-2765 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2766          TCGA-66-2767          TCGA-66-2770 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2771          TCGA-66-2773          TCGA-66-2777 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2778          TCGA-66-2780          TCGA-66-2781 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2782          TCGA-66-2783          TCGA-66-2786 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2787          TCGA-66-2788          TCGA-66-2789 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2791          TCGA-66-2792          TCGA-66-2793 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2794          TCGA-66-2795          TCGA-66-2800 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-85-6560          TCGA-85-6561 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
                     vv
clus                   R0  R1  R2  RX
  HIST2H2BE MUTATED     3   0   0   0
  HIST2H2BE WILD-TYPE 144   2   4  10
D65V14, multiclass
    clus
vv   HIST2H2BE MUTATED HIST2H2BE WILD-TYPE
  R0                 3                 144
  R1                 0                   2
  R2                 0                   4
  RX                 0                  10

Clustering(66) Variable = KCNJ3 MUTATION ANALYSIS
D66V1, survival
                 sevent
clus2              0  1
  KCNJ3 MUTATED    7  4
  KCNJ3 WILD-TYPE 90 66
  KCNJ3 MUTATED KCNJ3 WILD-TYPE 
             11             156 
  KCNJ3 MUTATED KCNJ3 WILD-TYPE 
              4              66 
$`KCNJ3 MUTATED`
TCGA-22-1012 TCGA-22-4599 TCGA-22-4604 TCGA-33-4566 TCGA-37-3789 TCGA-43-2578 
       14.10        38.17        13.12       173.79         0.43        18.08 
TCGA-60-2709 TCGA-66-2759 TCGA-66-2765 TCGA-66-2770 TCGA-66-2785 
       49.48        25.02         2.01        23.01         1.94 

$`KCNJ3 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 
        1.74        27.02        20.45        35.08        24.13        34.75 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       21.70        68.45        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2763 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2771 TCGA-66-2773 
        0.99         1.02         2.01         2.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  KCNJ3 MUTATED KCNJ3 WILD-TYPE 
           0.43            0.10 
  KCNJ3 MUTATED KCNJ3 WILD-TYPE 
         173.79          141.34 
  KCNJ3 MUTATED KCNJ3 WILD-TYPE 
          18.08           17.42 
[1] "0.4 - 173.8 (18.1)" "0.1 - 141.3 (17.4)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
  "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
  "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
  "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
[1] "hr=" "1.7"
D66V2, continuous
D66V3, binary
                 cls
clus                0   1
  KCNJ3 MUTATED     3   8
  KCNJ3 WILD-TYPE  44 123
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNJ3 MUTATED      3    8
  KCNJ3 WILD-TYPE   44  123
        clus
vv       KCNJ3 MUTATED KCNJ3 WILD-TYPE
  FEMALE             3              44
  MALE               8             123
D66V4, continuous
[1] "Remove cluster labels:" "KCNJ3 MUTATED"         
clus
  KCNJ3 MUTATED KCNJ3 WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4601      TCGA-22-4613 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-5472      TCGA-22-5473      TCGA-22-5474      TCGA-22-5477 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-5478      TCGA-22-5480      TCGA-22-5482      TCGA-22-5485 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-34-5234 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-5819      TCGA-60-2698 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2725      TCGA-60-2726 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  KCNJ3 MUTATED                                       0
  KCNJ3 WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  KCNJ3 MUTATED                                        0
  KCNJ3 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  KCNJ3 MUTATED                                                            11
  KCNJ3 WILD-TYPE                                                         161
D66V5, multiclass
                                                             clus
vv                                                            KCNJ3 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            11
                                                             clus
vv                                                            KCNJ3 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             161
                 vv
clus               T1  T2  T3  T4
  KCNJ3 MUTATED     1  10   0   0
  KCNJ3 WILD-TYPE  35 106  14  12
D66V6, multiclass
    clus
vv   KCNJ3 MUTATED KCNJ3 WILD-TYPE
  T1             1              35
  T2            10             106
  T3             0              14
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  KCNJ3 MUTATED     9   1   1   0
  KCNJ3 WILD-TYPE 108  38  16   5
D66V7, multiclass
    clus
vv   KCNJ3 MUTATED KCNJ3 WILD-TYPE
  N0             9             108
  N1             1              38
  N2             1              16
  N3             0               5
                 vv
clus               M0  M1  MX
  KCNJ3 MUTATED     9   0   1
  KCNJ3 WILD-TYPE 156   3   5
D66V8, multiclass
    clus
vv   KCNJ3 MUTATED KCNJ3 WILD-TYPE
  M0             9             156
  M1             0               3
  MX             1               5
                 vv
clus               I II III+IV
  KCNJ3 MUTATED    9  1      1
  KCNJ3 WILD-TYPE 88 37     40
D66V9, multiclass
        clus
vv       KCNJ3 MUTATED KCNJ3 WILD-TYPE
  I                  9              88
  II                 1              37
  III+IV             1              40
D66V10, binary
                 cls
clus                0   1
  KCNJ3 MUTATED     0  11
  KCNJ3 WILD-TYPE   4 163
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNJ3 MUTATED      0   11
  KCNJ3 WILD-TYPE    4  163
     clus
vv    KCNJ3 MUTATED KCNJ3 WILD-TYPE
  NO              0               4
  YES            11             163
D66V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  KCNJ3 MUTATED                                             4
  KCNJ3 WILD-TYPE                                          90
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  KCNJ3 MUTATED                                        2              4
  KCNJ3 WILD-TYPE                                     41             24
                 vv
clus              LIFELONG NON-SMOKER
  KCNJ3 MUTATED                     1
  KCNJ3 WILD-TYPE                   7
D66V12, multiclass
                                             clus
vv                                            KCNJ3 MUTATED KCNJ3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          4              24
  LIFELONG NON-SMOKER                                     1               7
D66V13, continuous
                 vv
clus               R0  R1  R2  RX
  KCNJ3 MUTATED    11   0   0   0
  KCNJ3 WILD-TYPE 136   2   4  10
D66V14, multiclass
    clus
vv   KCNJ3 MUTATED KCNJ3 WILD-TYPE
  R0            11             136
  R1             0               2
  R2             0               4
  RX             0              10

Clustering(67) Variable = NUCB2 MUTATION ANALYSIS
D67V1, survival
                 sevent
clus2              0  1
  NUCB2 MUTATED    3  3
  NUCB2 WILD-TYPE 94 67
  NUCB2 MUTATED NUCB2 WILD-TYPE 
              6             161 
  NUCB2 MUTATED NUCB2 WILD-TYPE 
              3              67 
$`NUCB2 MUTATED`
TCGA-18-3407 TCGA-22-4599 TCGA-43-6647 TCGA-66-2767 TCGA-66-2791 TCGA-85-6561 
        4.47        38.17         6.02         2.01         5.03         0.79 

$`NUCB2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16        81.07        79.46         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 
       14.10        27.02        20.45        35.08        24.13        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        8.48         7.00         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        2.01         1.02         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2792 
        1.94        25.97        40.01        22.98         4.04        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       10.06        54.08         4.01        49.05         0.36 

  NUCB2 MUTATED NUCB2 WILD-TYPE 
           0.79            0.10 
  NUCB2 MUTATED NUCB2 WILD-TYPE 
          38.17          173.79 
  NUCB2 MUTATED NUCB2 WILD-TYPE 
           4.75           18.84 
[1] "0.8 - 38.2 (4.8)"   "0.1 - 173.8 (18.8)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"NUCB2 WILD-TYPE"   "NUCB2 MUTATED" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "NUCB2 MUTATED" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
  "NUCB2 MUTATED" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE"   "NUCB2 MUTATED" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE"   "NUCB2 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE"   "NUCB2 MUTATED" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"NUCB2 WILD-TYPE"   "NUCB2 MUTATED" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "NUCB2 MUTATED" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
  "NUCB2 MUTATED" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE"   "NUCB2 MUTATED" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE"   "NUCB2 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE"   "NUCB2 MUTATED" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"NUCB2 WILD-TYPE"   "NUCB2 MUTATED" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "NUCB2 MUTATED" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
  "NUCB2 MUTATED" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE"   "NUCB2 MUTATED" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE"   "NUCB2 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE"   "NUCB2 MUTATED" 
[1] "hr=" "3"  
D67V2, continuous
D67V3, binary
                 cls
clus                0   1
  NUCB2 MUTATED     2   4
  NUCB2 WILD-TYPE  45 127
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NUCB2 MUTATED      2    4
  NUCB2 WILD-TYPE   45  127
        clus
vv       NUCB2 MUTATED NUCB2 WILD-TYPE
  FEMALE             2              45
  MALE               4             127
D67V4, continuous
[1] "Remove cluster labels:" "NUCB2 MUTATED"         
clus
  NUCB2 MUTATED NUCB2 WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3410      TCGA-18-3414      TCGA-18-3419 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5787      TCGA-22-4591      TCGA-22-4593 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-22-4595      TCGA-22-4601      TCGA-22-4604      TCGA-22-4613 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-22-5472      TCGA-22-5473      TCGA-22-5474      TCGA-22-5477 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-22-5478      TCGA-22-5480      TCGA-22-5482      TCGA-22-5485 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-34-5234 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-5819      TCGA-60-2698 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2725      TCGA-60-2726 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  NUCB2 MUTATED                                       0
  NUCB2 WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  NUCB2 MUTATED                                        0
  NUCB2 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  NUCB2 MUTATED                                                             6
  NUCB2 WILD-TYPE                                                         166
D67V5, multiclass
                                                             clus
vv                                                            NUCB2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             6
                                                             clus
vv                                                            NUCB2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             166
                 vv
clus               T1  T2  T3  T4
  NUCB2 MUTATED     0   6   0   0
  NUCB2 WILD-TYPE  36 110  14  12
D67V6, multiclass
    clus
vv   NUCB2 MUTATED NUCB2 WILD-TYPE
  T1             0              36
  T2             6             110
  T3             0              14
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  NUCB2 MUTATED     3   1   0   2
  NUCB2 WILD-TYPE 114  38  17   3
D67V7, multiclass
    clus
vv   NUCB2 MUTATED NUCB2 WILD-TYPE
  N0             3             114
  N1             1              38
  N2             0              17
  N3             2               3
                 vv
clus               M0  M1  MX
  NUCB2 MUTATED     5   0   1
  NUCB2 WILD-TYPE 160   3   5
D67V8, multiclass
    clus
vv   NUCB2 MUTATED NUCB2 WILD-TYPE
  M0             5             160
  M1             0               3
  MX             1               5
                 vv
clus               I II III+IV
  NUCB2 MUTATED    2  2      2
  NUCB2 WILD-TYPE 95 36     39
D67V9, multiclass
        clus
vv       NUCB2 MUTATED NUCB2 WILD-TYPE
  I                  2              95
  II                 2              36
  III+IV             2              39
D67V10, binary
                 cls
clus                0   1
  NUCB2 MUTATED     0   6
  NUCB2 WILD-TYPE   4 168
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NUCB2 MUTATED      0    6
  NUCB2 WILD-TYPE    4  168
     clus
vv    NUCB2 MUTATED NUCB2 WILD-TYPE
  NO              0               4
  YES             6             168
D67V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  NUCB2 MUTATED                                             4
  NUCB2 WILD-TYPE                                          90
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  NUCB2 MUTATED                                        1              1
  NUCB2 WILD-TYPE                                     42             27
                 vv
clus              LIFELONG NON-SMOKER
  NUCB2 MUTATED                     0
  NUCB2 WILD-TYPE                   8
D67V12, multiclass
                                             clus
vv                                            NUCB2 MUTATED NUCB2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              42
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D67V13, continuous
                 vv
clus               R0  R1  R2  RX
  NUCB2 MUTATED     4   1   0   1
  NUCB2 WILD-TYPE 143   1   4   9
D67V14, multiclass
    clus
vv   NUCB2 MUTATED NUCB2 WILD-TYPE
  R0             4             143
  R1             1               1
  R2             0               4
  RX             1               9

Clustering(68) Variable = TRHDE MUTATION ANALYSIS
D68V1, survival
                 sevent
clus2              0  1
  TRHDE MUTATED   11  3
  TRHDE WILD-TYPE 86 67
  TRHDE MUTATED TRHDE WILD-TYPE 
             14             153 
  TRHDE MUTATED TRHDE WILD-TYPE 
              3              67 
$`TRHDE MUTATED`
TCGA-18-3409 TCGA-18-3417 TCGA-21-5786 TCGA-22-5473 TCGA-33-4586 TCGA-37-3783 
       79.46        24.92        21.57        63.52        14.07         3.95 
TCGA-37-4141 TCGA-66-2754 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
        0.39         2.01         0.99         2.01         1.02         2.01 
TCGA-66-2782 TCGA-66-2787 
       12.00        40.01 

$`TRHDE WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        28.34         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 
       19.30        11.77        31.69        64.90        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
        0.79        71.34        11.74        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 
      103.53       141.34        19.76         2.63        61.61        32.84 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3789 TCGA-37-4133 
       14.07        22.95         5.52         4.96         0.43         7.82 
TCGA-37-4135 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        6.81         3.39        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.76         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       15.58        35.64         0.79        17.88        18.08        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       18.84         8.48         7.00         6.02         2.79         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 
       28.93         0.10         2.04         1.02        10.22        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        0.99         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 
       12.03         3.98        24.95         1.94        25.97        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  TRHDE MUTATED TRHDE WILD-TYPE 
           0.39            0.10 
  TRHDE MUTATED TRHDE WILD-TYPE 
          79.46          173.79 
  TRHDE MUTATED TRHDE WILD-TYPE 
          7.975          18.840 
[1] "0.4 - 79.5 (8.0)"   "0.1 - 173.8 (18.8)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" "TRHDE WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" "TRHDE WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "TRHDE MUTATED" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" "TRHDE WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "TRHDE MUTATED"   "TRHDE MUTATED"   "TRHDE MUTATED"   "TRHDE MUTATED" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "TRHDE MUTATED" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "TRHDE MUTATED" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" "TRHDE WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" "TRHDE WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "TRHDE MUTATED" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" "TRHDE WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "TRHDE MUTATED"   "TRHDE MUTATED"   "TRHDE MUTATED"   "TRHDE MUTATED" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "TRHDE MUTATED" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "TRHDE MUTATED" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" "TRHDE WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" "TRHDE WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "TRHDE MUTATED" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" "TRHDE WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "TRHDE MUTATED"   "TRHDE MUTATED"   "TRHDE MUTATED"   "TRHDE MUTATED" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "TRHDE MUTATED" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "TRHDE MUTATED" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
[1] "hr=" "1.5"
D68V2, continuous
D68V3, binary
                 cls
clus                0   1
  TRHDE MUTATED     2  12
  TRHDE WILD-TYPE  45 119
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRHDE MUTATED      2   12
  TRHDE WILD-TYPE   45  119
        clus
vv       TRHDE MUTATED TRHDE WILD-TYPE
  FEMALE             2              45
  MALE              12             119
D68V4, continuous
[1] "Remove cluster labels:" "TRHDE MUTATED"         
clus
  TRHDE MUTATED TRHDE WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-4604      TCGA-22-4613      TCGA-22-5472      TCGA-22-5474 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  TRHDE MUTATED                                       1
  TRHDE WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  TRHDE MUTATED                                        0
  TRHDE WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TRHDE MUTATED                                                            13
  TRHDE WILD-TYPE                                                         159
D68V5, multiclass
                                                             clus
vv                                                            TRHDE MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            13
                                                             clus
vv                                                            TRHDE WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             159
                 vv
clus               T1  T2  T3  T4
  TRHDE MUTATED     3   8   3   0
  TRHDE WILD-TYPE  33 108  11  12
D68V6, multiclass
    clus
vv   TRHDE MUTATED TRHDE WILD-TYPE
  T1             3              33
  T2             8             108
  T3             3              11
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  TRHDE MUTATED     8   1   4   1
  TRHDE WILD-TYPE 109  38  13   4
D68V7, multiclass
    clus
vv   TRHDE MUTATED TRHDE WILD-TYPE
  N0             8             109
  N1             1              38
  N2             4              13
  N3             1               4
                 vv
clus               M0  M1  MX
  TRHDE MUTATED    13   1   0
  TRHDE WILD-TYPE 152   2   6
D68V8, multiclass
    clus
vv   TRHDE MUTATED TRHDE WILD-TYPE
  M0            13             152
  M1             1               2
  MX             0               6
                 vv
clus               I II III+IV
  TRHDE MUTATED    6  1      6
  TRHDE WILD-TYPE 91 37     35
D68V9, multiclass
        clus
vv       TRHDE MUTATED TRHDE WILD-TYPE
  I                  6              91
  II                 1              37
  III+IV             6              35
D68V10, binary
                 cls
clus                0   1
  TRHDE MUTATED     0  14
  TRHDE WILD-TYPE   4 160
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRHDE MUTATED      0   14
  TRHDE WILD-TYPE    4  160
     clus
vv    TRHDE MUTATED TRHDE WILD-TYPE
  NO              0               4
  YES            14             160
D68V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  TRHDE MUTATED                                             8
  TRHDE WILD-TYPE                                          86
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  TRHDE MUTATED                                        3              1
  TRHDE WILD-TYPE                                     40             27
                 vv
clus              LIFELONG NON-SMOKER
  TRHDE MUTATED                     1
  TRHDE WILD-TYPE                   7
D68V12, multiclass
                                             clus
vv                                            TRHDE MUTATED TRHDE WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             8              86
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              40
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     1               7
D68V13, continuous
                 vv
clus               R0  R1  R2  RX
  TRHDE MUTATED    13   0   0   0
  TRHDE WILD-TYPE 134   2   4  10
D68V14, multiclass
    clus
vv   TRHDE MUTATED TRHDE WILD-TYPE
  R0            13             134
  R1             0               2
  R2             0               4
  RX             0              10

Clustering(69) Variable = OR14A16 MUTATION ANALYSIS
D69V1, survival
                   sevent
clus2                0  1
  OR14A16 MUTATED    5  4
  OR14A16 WILD-TYPE 92 66
  OR14A16 MUTATED OR14A16 WILD-TYPE 
                9               158 
  OR14A16 MUTATED OR14A16 WILD-TYPE 
                4                66 
$`OR14A16 MUTATED`
TCGA-18-3409 TCGA-33-4566 TCGA-33-6737 TCGA-39-5027 TCGA-51-4080 TCGA-60-2720 
       79.46       173.79        19.76        60.76         0.39         3.16 
TCGA-66-2754 TCGA-66-2789 TCGA-85-6561 
        2.01         4.04         0.79 

$`OR14A16 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-34-2596 
       97.94        43.10       103.53       141.34        14.07         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 
       74.07        44.71        68.58        55.17        70.03         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2721 TCGA-60-2722 
        9.01        47.87        35.34        30.61        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
       21.07         0.99         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
       22.98         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 
       49.05         0.36 

  OR14A16 MUTATED OR14A16 WILD-TYPE 
             0.39              0.10 
  OR14A16 MUTATED OR14A16 WILD-TYPE 
           173.79            141.34 
  OR14A16 MUTATED OR14A16 WILD-TYPE 
             4.04             17.98 
[1] "0.4 - 173.8 (4.0)"  "0.1 - 141.3 (18.0)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
[1] "hr=" "1.4"
D69V2, continuous
D69V3, binary
                   cls
clus                  0   1
  OR14A16 MUTATED     2   8
  OR14A16 WILD-TYPE  45 123
[1] "tbl2"
                   cls
clus                [,1] [,2]
  OR14A16 MUTATED      2    8
  OR14A16 WILD-TYPE   45  123
        clus
vv       OR14A16 MUTATED OR14A16 WILD-TYPE
  FEMALE               2                45
  MALE                 8               123
D69V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR14A16 MUTATED                                       2
  OR14A16 WILD-TYPE                                     3
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR14A16 MUTATED                                        0
  OR14A16 WILD-TYPE                                      1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR14A16 MUTATED                                                             8
  OR14A16 WILD-TYPE                                                         164
D69V5, multiclass
                                                             clus
vv                                                            OR14A16 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               8
                                                             clus
vv                                                            OR14A16 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               164
                   vv
clus                 T1  T2  T3  T4
  OR14A16 MUTATED     3   6   0   1
  OR14A16 WILD-TYPE  33 110  14  11
D69V6, multiclass
    clus
vv   OR14A16 MUTATED OR14A16 WILD-TYPE
  T1               3                33
  T2               6               110
  T3               0                14
  T4               1                11
                   vv
clus                 N0  N1  N2  N3
  OR14A16 MUTATED     6   1   2   1
  OR14A16 WILD-TYPE 111  38  15   4
D69V7, multiclass
    clus
vv   OR14A16 MUTATED OR14A16 WILD-TYPE
  N0               6               111
  N1               1                38
  N2               2                15
  N3               1                 4
                   vv
clus                 M0  M1  MX
  OR14A16 MUTATED     9   0   0
  OR14A16 WILD-TYPE 156   3   6
D69V8, multiclass
    clus
vv   OR14A16 MUTATED OR14A16 WILD-TYPE
  M0               9               156
  M1               0                 3
  MX               0                 6
                   vv
clus                 I II III+IV
  OR14A16 MUTATED    4  1      4
  OR14A16 WILD-TYPE 93 37     37
D69V9, multiclass
        clus
vv       OR14A16 MUTATED OR14A16 WILD-TYPE
  I                    4                93
  II                   1                37
  III+IV               4                37
D69V10, binary
                   cls
clus                  0   1
  OR14A16 MUTATED     0  10
  OR14A16 WILD-TYPE   4 164
[1] "tbl2"
                   cls
clus                [,1] [,2]
  OR14A16 MUTATED      0   10
  OR14A16 WILD-TYPE    4  164
     clus
vv    OR14A16 MUTATED OR14A16 WILD-TYPE
  NO                0                 4
  YES              10               164
D69V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR14A16 MUTATED                                             7
  OR14A16 WILD-TYPE                                          87
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR14A16 MUTATED                                        1              2
  OR14A16 WILD-TYPE                                     42             26
                   vv
clus                LIFELONG NON-SMOKER
  OR14A16 MUTATED                     0
  OR14A16 WILD-TYPE                   8
D69V12, multiclass
                                             clus
vv                                            OR14A16 MUTATED OR14A16 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               7                87
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                42
  CURRENT SMOKER                                            2                26
  LIFELONG NON-SMOKER                                       0                 8
D69V13, continuous
                   vv
clus                 R0  R1  R2  RX
  OR14A16 MUTATED     9   0   0   0
  OR14A16 WILD-TYPE 138   2   4  10
D69V14, multiclass
    clus
vv   OR14A16 MUTATED OR14A16 WILD-TYPE
  R0               9               138
  R1               0                 2
  R2               0                 4
  RX               0                10

Clustering(70) Variable = OR6K3 MUTATION ANALYSIS
D70V1, survival
                 sevent
clus2              0  1
  OR6K3 MUTATED    5  3
  OR6K3 WILD-TYPE 92 67
  OR6K3 MUTATED OR6K3 WILD-TYPE 
              8             159 
  OR6K3 MUTATED OR6K3 WILD-TYPE 
              3              67 
$`OR6K3 MUTATED`
TCGA-18-3412 TCGA-18-4083 TCGA-21-1081 TCGA-33-4583 TCGA-34-5240 TCGA-66-2757 
       11.34         6.15         9.30       141.34         7.73         0.99 
TCGA-66-2766 TCGA-66-2785 
        1.02         1.94 

$`OR6K3 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 
       60.89        34.78        15.55        31.63        29.85        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      173.79       103.53        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         4.96         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 
       20.98        25.02         0.99         2.01         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
        3.98        12.00        24.95        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  OR6K3 MUTATED OR6K3 WILD-TYPE 
           0.99            0.10 
  OR6K3 MUTATED OR6K3 WILD-TYPE 
         141.34          173.79 
  OR6K3 MUTATED OR6K3 WILD-TYPE 
           6.94           19.00 
[1] "1.0 - 141.3 (6.9)"  "0.1 - 173.8 (19.0)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
[1] "hr=" "1.3"
D70V2, continuous
D70V3, binary
                 cls
clus                0   1
  OR6K3 MUTATED     2   6
  OR6K3 WILD-TYPE  45 125
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6K3 MUTATED      2    6
  OR6K3 WILD-TYPE   45  125
        clus
vv       OR6K3 MUTATED OR6K3 WILD-TYPE
  FEMALE             2              45
  MALE               6             125
D70V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR6K3 MUTATED                                       1
  OR6K3 WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR6K3 MUTATED                                        0
  OR6K3 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR6K3 MUTATED                                                             7
  OR6K3 WILD-TYPE                                                         165
D70V5, multiclass
                                                             clus
vv                                                            OR6K3 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             7
                                                             clus
vv                                                            OR6K3 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             165
                 vv
clus               T1  T2  T3  T4
  OR6K3 MUTATED     2   6   0   0
  OR6K3 WILD-TYPE  34 110  14  12
D70V6, multiclass
    clus
vv   OR6K3 MUTATED OR6K3 WILD-TYPE
  T1             2              34
  T2             6             110
  T3             0              14
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  OR6K3 MUTATED     4   3   1   0
  OR6K3 WILD-TYPE 113  36  16   5
D70V7, multiclass
    clus
vv   OR6K3 MUTATED OR6K3 WILD-TYPE
  N0             4             113
  N1             3              36
  N2             1              16
  N3             0               5
                 vv
clus               M0  M1  MX
  OR6K3 MUTATED     8   0   0
  OR6K3 WILD-TYPE 157   3   6
D70V8, multiclass
    clus
vv   OR6K3 MUTATED OR6K3 WILD-TYPE
  M0             8             157
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  OR6K3 MUTATED    4  3      1
  OR6K3 WILD-TYPE 93 35     40
D70V9, multiclass
        clus
vv       OR6K3 MUTATED OR6K3 WILD-TYPE
  I                  4              93
  II                 3              35
  III+IV             1              40
D70V10, binary
                 cls
clus                0   1
  OR6K3 MUTATED     0   8
  OR6K3 WILD-TYPE   4 166
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6K3 MUTATED      0    8
  OR6K3 WILD-TYPE    4  166
     clus
vv    OR6K3 MUTATED OR6K3 WILD-TYPE
  NO              0               4
  YES             8             166
D70V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR6K3 MUTATED                                             5
  OR6K3 WILD-TYPE                                          89
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR6K3 MUTATED                                        1              2
  OR6K3 WILD-TYPE                                     42             26
                 vv
clus              LIFELONG NON-SMOKER
  OR6K3 MUTATED                     0
  OR6K3 WILD-TYPE                   8
D70V12, multiclass
                                             clus
vv                                            OR6K3 MUTATED OR6K3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              42
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0               8
D70V13, continuous
                 vv
clus               R0  R1  R2  RX
  OR6K3 MUTATED     7   0   0   0
  OR6K3 WILD-TYPE 140   2   4  10
D70V14, multiclass
    clus
vv   OR6K3 MUTATED OR6K3 WILD-TYPE
  R0             7             140
  R1             0               2
  R2             0               4
  RX             0              10

Clustering(71) Variable = SLC6A5 MUTATION ANALYSIS
D71V1, survival
                  sevent
clus2               0  1
  SLC6A5 MUTATED    3  3
  SLC6A5 WILD-TYPE 94 67
  SLC6A5 MUTATED SLC6A5 WILD-TYPE 
               6              161 
  SLC6A5 MUTATED SLC6A5 WILD-TYPE 
               3               67 
$`SLC6A5 MUTATED`
TCGA-22-5472 TCGA-22-5473 TCGA-39-5036 TCGA-43-5668 TCGA-46-3768 TCGA-66-2765 
       64.90        63.52        35.64         8.48         9.96         2.01 

$`SLC6A5 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 
       38.17        34.75        13.12        19.30        11.77        31.69 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-6143 
        0.79        17.88        18.08        11.57        18.84         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        6.02         2.79         5.42         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2766 TCGA-66-2767 
        0.99        20.98        25.02         0.99         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  SLC6A5 MUTATED SLC6A5 WILD-TYPE 
            2.01             0.10 
  SLC6A5 MUTATED SLC6A5 WILD-TYPE 
           64.90           173.79 
  SLC6A5 MUTATED SLC6A5 WILD-TYPE 
           22.80            17.88 
[1] "2.0 - 64.9 (22.8)"  "0.1 - 173.8 (17.9)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE"   "SLC6A5 MUTATED"   "SLC6A5 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
  "SLC6A5 MUTATED" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE"   "SLC6A5 MUTATED" "SLC6A5 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE"   "SLC6A5 MUTATED" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"SLC6A5 WILD-TYPE"   "SLC6A5 MUTATED" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE"   "SLC6A5 MUTATED"   "SLC6A5 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
  "SLC6A5 MUTATED" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE"   "SLC6A5 MUTATED" "SLC6A5 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE"   "SLC6A5 MUTATED" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"SLC6A5 WILD-TYPE"   "SLC6A5 MUTATED" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE"   "SLC6A5 MUTATED"   "SLC6A5 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
  "SLC6A5 MUTATED" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE"   "SLC6A5 MUTATED" "SLC6A5 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE"   "SLC6A5 MUTATED" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"SLC6A5 WILD-TYPE"   "SLC6A5 MUTATED" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
[1] "hr=" "1"  
D71V2, continuous
D71V3, binary
                  cls
clus                 0   1
  SLC6A5 MUTATED     0   6
  SLC6A5 WILD-TYPE  47 125
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SLC6A5 MUTATED      0    6
  SLC6A5 WILD-TYPE   47  125
        clus
vv       SLC6A5 MUTATED SLC6A5 WILD-TYPE
  FEMALE              0               47
  MALE                6              125
D71V4, continuous
[1] "Remove cluster labels:" "SLC6A5 MUTATED"        
clus
  SLC6A5 MUTATED SLC6A5 WILD-TYPE 
               2               34 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4595       TCGA-22-4599       TCGA-22-4601 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-4604       TCGA-22-4613       TCGA-22-5474       TCGA-22-5477 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-5478       TCGA-22-5480       TCGA-22-5482       TCGA-22-5485 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-5489       TCGA-22-5491       TCGA-22-5492       TCGA-34-5234 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-37-4133       TCGA-37-4135       TCGA-37-5819       TCGA-60-2698 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2715       TCGA-60-2725       TCGA-60-2726 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-70-6722       TCGA-70-6723 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  SLC6A5 MUTATED                                       0
  SLC6A5 WILD-TYPE                                     5
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  SLC6A5 MUTATED                                        0
  SLC6A5 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SLC6A5 MUTATED                                                             6
  SLC6A5 WILD-TYPE                                                         166
D71V5, multiclass
                                                             clus
vv                                                            SLC6A5 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              6
                                                             clus
vv                                                            SLC6A5 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              166
                  vv
clus                T1  T2  T3  T4
  SLC6A5 MUTATED     1   3   2   0
  SLC6A5 WILD-TYPE  35 113  12  12
D71V6, multiclass
    clus
vv   SLC6A5 MUTATED SLC6A5 WILD-TYPE
  T1              1               35
  T2              3              113
  T3              2               12
  T4              0               12
                  vv
clus                N0  N1  N2  N3
  SLC6A5 MUTATED     4   2   0   0
  SLC6A5 WILD-TYPE 113  37  17   5
D71V7, multiclass
    clus
vv   SLC6A5 MUTATED SLC6A5 WILD-TYPE
  N0              4              113
  N1              2               37
  N2              0               17
  N3              0                5
                  vv
clus                M0  M1  MX
  SLC6A5 MUTATED     6   0   0
  SLC6A5 WILD-TYPE 159   3   6
D71V8, multiclass
    clus
vv   SLC6A5 MUTATED SLC6A5 WILD-TYPE
  M0              6              159
  M1              0                3
  MX              0                6
                  vv
clus                I II III+IV
  SLC6A5 MUTATED    4  1      1
  SLC6A5 WILD-TYPE 93 37     40
D71V9, multiclass
        clus
vv       SLC6A5 MUTATED SLC6A5 WILD-TYPE
  I                   4               93
  II                  1               37
  III+IV              1               40
D71V10, binary
                  cls
clus                 0   1
  SLC6A5 MUTATED     0   6
  SLC6A5 WILD-TYPE   4 168
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SLC6A5 MUTATED      0    6
  SLC6A5 WILD-TYPE    4  168
     clus
vv    SLC6A5 MUTATED SLC6A5 WILD-TYPE
  NO               0                4
  YES              6              168
D71V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  SLC6A5 MUTATED                                             4
  SLC6A5 WILD-TYPE                                          90
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  SLC6A5 MUTATED                                        2              0
  SLC6A5 WILD-TYPE                                     41             28
                  vv
clus               LIFELONG NON-SMOKER
  SLC6A5 MUTATED                     0
  SLC6A5 WILD-TYPE                   8
D71V12, multiclass
                                             clus
vv                                            SLC6A5 MUTATED SLC6A5 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              4               90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               41
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      0                8
D71V13, continuous
                  vv
clus                R0  R1  R2  RX
  SLC6A5 MUTATED     5   0   0   0
  SLC6A5 WILD-TYPE 142   2   4  10
D71V14, multiclass
    clus
vv   SLC6A5 MUTATED SLC6A5 WILD-TYPE
  R0              5              142
  R1              0                2
  R2              0                4
  RX              0               10

Clustering(72) Variable = OR2AK2 MUTATION ANALYSIS
D72V1, survival
                  sevent
clus2               0  1
  OR2AK2 MUTATED    5  3
  OR2AK2 WILD-TYPE 92 67
  OR2AK2 MUTATED OR2AK2 WILD-TYPE 
               8              159 
  OR2AK2 MUTATED OR2AK2 WILD-TYPE 
               3               67 
$`OR2AK2 MUTATED`
TCGA-18-5595 TCGA-21-5786 TCGA-33-4566 TCGA-37-4141 TCGA-56-6545 TCGA-60-2723 
       27.16        21.57       173.79         0.39         2.04        22.78 
TCGA-66-2789 TCGA-85-6560 
        4.04         0.36 

$`OR2AK2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-21-1070 
       43.76         6.15         2.79        90.51         3.02       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       29.85        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
       43.10       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 TCGA-39-5016 
        3.95         0.43         7.82         6.81         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6546 
        0.39         0.39         2.07        28.93         0.10         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       24.10         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
       21.07         0.99         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       40.01        22.98         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6561 
        4.01        49.05         0.79 

  OR2AK2 MUTATED OR2AK2 WILD-TYPE 
            0.36             0.10 
  OR2AK2 MUTATED OR2AK2 WILD-TYPE 
          173.79           141.34 
  OR2AK2 MUTATED OR2AK2 WILD-TYPE 
          12.805           17.880 
[1] "0.4 - 173.8 (12.8)" "0.1 - 141.3 (17.9)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" 
[1] "hr=" "1.5"
D72V2, continuous
D72V3, binary
                  cls
clus                 0   1
  OR2AK2 MUTATED     3   5
  OR2AK2 WILD-TYPE  44 126
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2AK2 MUTATED      3    5
  OR2AK2 WILD-TYPE   44  126
        clus
vv       OR2AK2 MUTATED OR2AK2 WILD-TYPE
  FEMALE              3               44
  MALE                5              126
D72V4, continuous
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR2AK2 MUTATED                                       0
  OR2AK2 WILD-TYPE                                     5
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR2AK2 MUTATED                                        0
  OR2AK2 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR2AK2 MUTATED                                                             8
  OR2AK2 WILD-TYPE                                                         164
D72V5, multiclass
                                                             clus
vv                                                            OR2AK2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              8
                                                             clus
vv                                                            OR2AK2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              164
                  vv
clus                T1  T2  T3  T4
  OR2AK2 MUTATED     2   6   0   0
  OR2AK2 WILD-TYPE  34 110  14  12
D72V6, multiclass
    clus
vv   OR2AK2 MUTATED OR2AK2 WILD-TYPE
  T1              2               34
  T2              6              110
  T3              0               14
  T4              0               12
                  vv
clus                N0  N1  N2  N3
  OR2AK2 MUTATED     6   1   0   1
  OR2AK2 WILD-TYPE 111  38  17   4
D72V7, multiclass
    clus
vv   OR2AK2 MUTATED OR2AK2 WILD-TYPE
  N0              6              111
  N1              1               38
  N2              0               17
  N3              1                4
                  vv
clus                M0  M1  MX
  OR2AK2 MUTATED     8   0   0
  OR2AK2 WILD-TYPE 157   3   6
D72V8, multiclass
    clus
vv   OR2AK2 MUTATED OR2AK2 WILD-TYPE
  M0              8              157
  M1              0                3
  MX              0                6
                  vv
clus                I II III+IV
  OR2AK2 MUTATED    6  0      2
  OR2AK2 WILD-TYPE 91 38     39
D72V9, multiclass
        clus
vv       OR2AK2 MUTATED OR2AK2 WILD-TYPE
  I                   6               91
  II                  0               38
  III+IV              2               39
D72V10, binary
                  cls
clus                 0   1
  OR2AK2 MUTATED     0   8
  OR2AK2 WILD-TYPE   4 166
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2AK2 MUTATED      0    8
  OR2AK2 WILD-TYPE    4  166
     clus
vv    OR2AK2 MUTATED OR2AK2 WILD-TYPE
  NO               0                4
  YES              8              166
D72V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR2AK2 MUTATED                                             4
  OR2AK2 WILD-TYPE                                          90
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR2AK2 MUTATED                                        0              2
  OR2AK2 WILD-TYPE                                     43             26
                  vv
clus               LIFELONG NON-SMOKER
  OR2AK2 MUTATED                     2
  OR2AK2 WILD-TYPE                   6
D72V12, multiclass
                                             clus
vv                                            OR2AK2 MUTATED OR2AK2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              4               90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   0               43
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      2                6
D72V13, continuous
                  vv
clus                R0  R1  R2  RX
  OR2AK2 MUTATED     8   0   0   0
  OR2AK2 WILD-TYPE 139   2   4  10
D72V14, multiclass
    clus
vv   OR2AK2 MUTATED OR2AK2 WILD-TYPE
  R0              8              139
  R1              0                2
  R2              0                4
  RX              0               10

Clustering(73) Variable = FAM5B MUTATION ANALYSIS
D73V1, survival
                 sevent
clus2              0  1
  FAM5B MUTATED   11  3
  FAM5B WILD-TYPE 86 67
  FAM5B MUTATED FAM5B WILD-TYPE 
             14             153 
  FAM5B MUTATED FAM5B WILD-TYPE 
              3              67 
$`FAM5B MUTATED`
TCGA-18-3421 TCGA-21-5784 TCGA-33-4586 TCGA-39-5016 TCGA-39-5022 TCGA-39-5035 
       43.76        29.85        14.07        74.07        55.17        15.58 
TCGA-43-5668 TCGA-56-6545 TCGA-60-2720 TCGA-66-2744 TCGA-66-2768 TCGA-66-2787 
        8.48         2.04         3.16         0.99         2.01        40.01 
TCGA-66-2791 TCGA-85-6560 
        5.03         0.36 

$`FAM5B WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-6737 TCGA-34-2596 
       43.10       173.79       103.53       141.34        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       44.71        68.58        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
        1.94        27.35        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       11.57        18.84         7.00         6.02         2.79         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 
       28.93         0.10         1.02        10.22        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
       30.61        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2754 TCGA-66-2755 
       11.77        16.96        43.10        21.07         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        1.02         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       25.97        22.98         4.04        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6561 
        4.01        49.05         0.79 

  FAM5B MUTATED FAM5B WILD-TYPE 
           0.36            0.10 
  FAM5B MUTATED FAM5B WILD-TYPE 
          74.07          173.79 
  FAM5B MUTATED FAM5B WILD-TYPE 
         11.275          18.840 
[1] "0.4 - 74.1 (11.3)"  "0.1 - 173.8 (18.8)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" 
[1] "hr=" "1.7"
D73V2, continuous
D73V3, binary
                 cls
clus                0   1
  FAM5B MUTATED     4  10
  FAM5B WILD-TYPE  43 121
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FAM5B MUTATED      4   10
  FAM5B WILD-TYPE   43  121
        clus
vv       FAM5B MUTATED FAM5B WILD-TYPE
  FEMALE             4              43
  MALE              10             121
D73V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  FAM5B MUTATED                                       1
  FAM5B WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  FAM5B MUTATED                                        0
  FAM5B WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  FAM5B MUTATED                                                            13
  FAM5B WILD-TYPE                                                         159
D73V5, multiclass
                                                             clus
vv                                                            FAM5B MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            13
                                                             clus
vv                                                            FAM5B WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             159
                 vv
clus               T1  T2  T3  T4
  FAM5B MUTATED     3  11   0   0
  FAM5B WILD-TYPE  33 105  14  12
D73V6, multiclass
    clus
vv   FAM5B MUTATED FAM5B WILD-TYPE
  T1             3              33
  T2            11             105
  T3             0              14
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  FAM5B MUTATED     7   5   1   1
  FAM5B WILD-TYPE 110  34  16   4
D73V7, multiclass
    clus
vv   FAM5B MUTATED FAM5B WILD-TYPE
  N0             7             110
  N1             5              34
  N2             1              16
  N3             1               4
                 vv
clus               M0  M1  MX
  FAM5B MUTATED    14   0   0
  FAM5B WILD-TYPE 151   3   6
D73V8, multiclass
    clus
vv   FAM5B MUTATED FAM5B WILD-TYPE
  M0            14             151
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  FAM5B MUTATED    7  4      3
  FAM5B WILD-TYPE 90 34     38
D73V9, multiclass
        clus
vv       FAM5B MUTATED FAM5B WILD-TYPE
  I                  7              90
  II                 4              34
  III+IV             3              38
D73V10, binary
                 cls
clus                0   1
  FAM5B MUTATED     0  14
  FAM5B WILD-TYPE   4 160
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FAM5B MUTATED      0   14
  FAM5B WILD-TYPE    4  160
     clus
vv    FAM5B MUTATED FAM5B WILD-TYPE
  NO              0               4
  YES            14             160
D73V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  FAM5B MUTATED                                            11
  FAM5B WILD-TYPE                                          83
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  FAM5B MUTATED                                        1              1
  FAM5B WILD-TYPE                                     42             27
                 vv
clus              LIFELONG NON-SMOKER
  FAM5B MUTATED                     1
  FAM5B WILD-TYPE                   7
D73V12, multiclass
                                             clus
vv                                            FAM5B MUTATED FAM5B WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            11              83
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              42
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     1               7
D73V13, continuous
                 vv
clus               R0  R1  R2  RX
  FAM5B MUTATED    11   1   0   0
  FAM5B WILD-TYPE 136   1   4  10
D73V14, multiclass
    clus
vv   FAM5B MUTATED FAM5B WILD-TYPE
  R0            11             136
  R1             1               1
  R2             0               4
  RX             0              10

Clustering(74) Variable = OR10A4 MUTATION ANALYSIS
D74V1, survival
                  sevent
clus2               0  1
  OR10A4 MUTATED    4  4
  OR10A4 WILD-TYPE 93 66
  OR10A4 MUTATED OR10A4 WILD-TYPE 
               8              159 
  OR10A4 MUTATED OR10A4 WILD-TYPE 
               4               66 
$`OR10A4 MUTATED`
TCGA-18-3411 TCGA-18-3419 TCGA-21-5787 TCGA-33-4566 TCGA-33-4586 TCGA-39-5036 
       46.52         1.61        10.82       173.79        14.07        35.64 
TCGA-60-2719 TCGA-66-2793 
       30.61        10.06 

$`OR10A4 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 
       12.16         4.47        81.07        79.46         4.80        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        28.34        24.92        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       21.57         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4582 TCGA-33-4583 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 
      103.53       141.34        19.76         2.63        61.61        32.84 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         4.96         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
        1.94        27.35        15.58         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       47.87        35.34         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 
       22.98         4.04         5.03        30.02        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  OR10A4 MUTATED OR10A4 WILD-TYPE 
            1.61             0.10 
  OR10A4 MUTATED OR10A4 WILD-TYPE 
          173.79           141.34 
  OR10A4 MUTATED OR10A4 WILD-TYPE 
           22.34            17.88 
[1] "1.6 - 173.8 (22.3)" "0.1 - 141.3 (17.9)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR10A4 WILD-TYPE"   "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE"   "OR10A4 MUTATED" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE"   "OR10A4 MUTATED" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR10A4 WILD-TYPE"   "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
  "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
  "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE"   "OR10A4 MUTATED" "OR10A4 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR10A4 WILD-TYPE"   "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR10A4 WILD-TYPE"   "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE"   "OR10A4 MUTATED" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE"   "OR10A4 MUTATED" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR10A4 WILD-TYPE"   "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
  "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
  "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE"   "OR10A4 MUTATED" "OR10A4 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR10A4 WILD-TYPE"   "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR10A4 WILD-TYPE"   "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE"   "OR10A4 MUTATED" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE"   "OR10A4 MUTATED" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR10A4 WILD-TYPE"   "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
  "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
  "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE"   "OR10A4 MUTATED" "OR10A4 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR10A4 WILD-TYPE"   "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
[1] "hr=" "1.4"
D74V2, continuous
D74V3, binary
                  cls
clus                 0   1
  OR10A4 MUTATED     2   6
  OR10A4 WILD-TYPE  45 125
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10A4 MUTATED      2    6
  OR10A4 WILD-TYPE   45  125
        clus
vv       OR10A4 MUTATED OR10A4 WILD-TYPE
  FEMALE              2               45
  MALE                6              125
D74V4, continuous
[1] "Remove cluster labels:" "OR10A4 MUTATED"        
clus
  OR10A4 MUTATED OR10A4 WILD-TYPE 
               2               34 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-21-5782       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4613 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-5472       TCGA-22-5473       TCGA-22-5474       TCGA-22-5477 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-5478       TCGA-22-5480       TCGA-22-5482       TCGA-22-5485 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-5489       TCGA-22-5491       TCGA-22-5492       TCGA-34-5234 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-37-4133       TCGA-37-4135       TCGA-37-5819       TCGA-60-2698 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2715       TCGA-60-2725       TCGA-60-2726 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-70-6722       TCGA-70-6723 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR10A4 MUTATED                                       0
  OR10A4 WILD-TYPE                                     5
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR10A4 MUTATED                                        0
  OR10A4 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR10A4 MUTATED                                                             8
  OR10A4 WILD-TYPE                                                         164
D74V5, multiclass
                                                             clus
vv                                                            OR10A4 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              8
                                                             clus
vv                                                            OR10A4 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              164
                  vv
clus                T1  T2  T3  T4
  OR10A4 MUTATED     1   6   0   1
  OR10A4 WILD-TYPE  35 110  14  11
D74V6, multiclass
    clus
vv   OR10A4 MUTATED OR10A4 WILD-TYPE
  T1              1               35
  T2              6              110
  T3              0               14
  T4              1               11
                  vv
clus                N0  N1  N2  N3
  OR10A4 MUTATED     3   2   3   0
  OR10A4 WILD-TYPE 114  37  14   5
D74V7, multiclass
    clus
vv   OR10A4 MUTATED OR10A4 WILD-TYPE
  N0              3              114
  N1              2               37
  N2              3               14
  N3              0                5
                  vv
clus                M0  M1  MX
  OR10A4 MUTATED     8   0   0
  OR10A4 WILD-TYPE 157   3   6
D74V8, multiclass
    clus
vv   OR10A4 MUTATED OR10A4 WILD-TYPE
  M0              8              157
  M1              0                3
  MX              0                6
                  vv
clus                I II III+IV
  OR10A4 MUTATED    3  1      4
  OR10A4 WILD-TYPE 94 37     37
D74V9, multiclass
        clus
vv       OR10A4 MUTATED OR10A4 WILD-TYPE
  I                   3               94
  II                  1               37
  III+IV              4               37
D74V10, binary
                  cls
clus                 0   1
  OR10A4 MUTATED     1   7
  OR10A4 WILD-TYPE   3 167
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10A4 MUTATED      1    7
  OR10A4 WILD-TYPE    3  167
     clus
vv    OR10A4 MUTATED OR10A4 WILD-TYPE
  NO               1                3
  YES              7              167
D74V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR10A4 MUTATED                                             5
  OR10A4 WILD-TYPE                                          89
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR10A4 MUTATED                                        1              2
  OR10A4 WILD-TYPE                                     42             26
                  vv
clus               LIFELONG NON-SMOKER
  OR10A4 MUTATED                     0
  OR10A4 WILD-TYPE                   8
D74V12, multiclass
                                             clus
vv                                            OR10A4 MUTATED OR10A4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              5               89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               42
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0                8
D74V13, continuous
                  vv
clus                R0  R1  R2  RX
  OR10A4 MUTATED     7   0   0   0
  OR10A4 WILD-TYPE 140   2   4  10
D74V14, multiclass
    clus
vv   OR10A4 MUTATED OR10A4 WILD-TYPE
  R0              7              140
  R1              0                2
  R2              0                4
  RX              0               10

Clustering(75) Variable = OR8H1 MUTATION ANALYSIS
D75V1, survival
                 sevent
clus2              0  1
  OR8H1 MUTATED    5  3
  OR8H1 WILD-TYPE 92 67
  OR8H1 MUTATED OR8H1 WILD-TYPE 
              8             159 
  OR8H1 MUTATED OR8H1 WILD-TYPE 
              3              67 
$`OR8H1 MUTATED`
TCGA-21-1071 TCGA-22-5471 TCGA-33-4566 TCGA-33-4586 TCGA-60-2708 TCGA-60-2719 
       46.88        31.69       173.79        14.07        68.45        30.61 
TCGA-66-2756 TCGA-66-2785 
        0.99         1.94 

$`OR8H1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
      115.59        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5472 TCGA-22-5473 
       34.75        13.12        19.30        11.77        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
       43.10       103.53       141.34        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
        1.02        10.22        21.70        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
        9.01        47.87        35.34         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 
       21.07         0.99         2.01         0.92         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
        3.98        12.00        24.95        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  OR8H1 MUTATED OR8H1 WILD-TYPE 
           0.99            0.10 
  OR8H1 MUTATED OR8H1 WILD-TYPE 
         173.79          141.34 
  OR8H1 MUTATED OR8H1 WILD-TYPE 
          31.15           16.96 
[1] "1.0 - 173.8 (31.1)" "0.1 - 141.3 (17.0)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE"   "OR8H1 MUTATED" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR8H1 WILD-TYPE"   "OR8H1 MUTATED" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR8H1 WILD-TYPE"   "OR8H1 MUTATED" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "OR8H1 MUTATED" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE"   "OR8H1 MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE"   "OR8H1 MUTATED" "OR8H1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "OR8H1 MUTATED" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE"   "OR8H1 MUTATED" "OR8H1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE"   "OR8H1 MUTATED" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR8H1 WILD-TYPE"   "OR8H1 MUTATED" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR8H1 WILD-TYPE"   "OR8H1 MUTATED" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "OR8H1 MUTATED" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE"   "OR8H1 MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE"   "OR8H1 MUTATED" "OR8H1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "OR8H1 MUTATED" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE"   "OR8H1 MUTATED" "OR8H1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE"   "OR8H1 MUTATED" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR8H1 WILD-TYPE"   "OR8H1 MUTATED" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR8H1 WILD-TYPE"   "OR8H1 MUTATED" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "OR8H1 MUTATED" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE"   "OR8H1 MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE"   "OR8H1 MUTATED" "OR8H1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "OR8H1 MUTATED" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE"   "OR8H1 MUTATED" "OR8H1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
[1] "hr=" "2.5"
D75V2, continuous
D75V3, binary
                 cls
clus                0   1
  OR8H1 MUTATED     2   6
  OR8H1 WILD-TYPE  45 125
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8H1 MUTATED      2    6
  OR8H1 WILD-TYPE   45  125
        clus
vv       OR8H1 MUTATED OR8H1 WILD-TYPE
  FEMALE             2              45
  MALE               6             125
D75V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR8H1 MUTATED                                       0
  OR8H1 WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR8H1 MUTATED                                        0
  OR8H1 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR8H1 MUTATED                                                             8
  OR8H1 WILD-TYPE                                                         164
D75V5, multiclass
                                                             clus
vv                                                            OR8H1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             8
                                                             clus
vv                                                            OR8H1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             164
                 vv
clus               T1  T2  T3  T4
  OR8H1 MUTATED     1   6   0   1
  OR8H1 WILD-TYPE  35 110  14  11
D75V6, multiclass
    clus
vv   OR8H1 MUTATED OR8H1 WILD-TYPE
  T1             1              35
  T2             6             110
  T3             0              14
  T4             1              11
                 vv
clus               N0  N1  N2  N3
  OR8H1 MUTATED     6   1   1   0
  OR8H1 WILD-TYPE 111  38  16   5
D75V7, multiclass
    clus
vv   OR8H1 MUTATED OR8H1 WILD-TYPE
  N0             6             111
  N1             1              38
  N2             1              16
  N3             0               5
                 vv
clus               M0  M1  MX
  OR8H1 MUTATED     8   0   0
  OR8H1 WILD-TYPE 157   3   6
D75V8, multiclass
    clus
vv   OR8H1 MUTATED OR8H1 WILD-TYPE
  M0             8             157
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  OR8H1 MUTATED    5  1      2
  OR8H1 WILD-TYPE 92 37     39
D75V9, multiclass
        clus
vv       OR8H1 MUTATED OR8H1 WILD-TYPE
  I                  5              92
  II                 1              37
  III+IV             2              39
D75V10, binary
                 cls
clus                0   1
  OR8H1 MUTATED     1   7
  OR8H1 WILD-TYPE   3 167
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8H1 MUTATED      1    7
  OR8H1 WILD-TYPE    3  167
     clus
vv    OR8H1 MUTATED OR8H1 WILD-TYPE
  NO              1               3
  YES             7             167
D75V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR8H1 MUTATED                                             5
  OR8H1 WILD-TYPE                                          89
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR8H1 MUTATED                                        1              2
  OR8H1 WILD-TYPE                                     42             26
                 vv
clus              LIFELONG NON-SMOKER
  OR8H1 MUTATED                     0
  OR8H1 WILD-TYPE                   8
D75V12, multiclass
                                             clus
vv                                            OR8H1 MUTATED OR8H1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              42
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0               8
D75V13, continuous
                 vv
clus               R0  R1  R2  RX
  OR8H1 MUTATED     6   0   1   0
  OR8H1 WILD-TYPE 141   2   3  10
D75V14, multiclass
    clus
vv   OR8H1 MUTATED OR8H1 WILD-TYPE
  R0             6             141
  R1             0               2
  R2             1               3
  RX             0              10

Clustering(76) Variable = PYHIN1 MUTATION ANALYSIS
D76V1, survival
                  sevent
clus2               0  1
  PYHIN1 MUTATED    8  3
  PYHIN1 WILD-TYPE 89 67
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
              11              156 
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
               3               67 
$`PYHIN1 MUTATED`
TCGA-18-3409 TCGA-21-1070 TCGA-21-5784 TCGA-22-4599 TCGA-37-3789 TCGA-37-4133 
       79.46       115.59        29.85        38.17         0.43         7.82 
TCGA-39-5030 TCGA-43-6770 TCGA-56-6545 TCGA-66-2773 TCGA-66-2792 
        1.94         2.79         2.04         3.02        30.02 

$`PYHIN1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 
        6.15         2.79        90.51         3.02        27.16        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5786 
       60.89        34.78        15.55         9.30        31.63        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 
       20.45        35.08        24.13        34.75        13.12        19.30 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
        0.79        71.34        11.74        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        6.81         0.39         3.39        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5031 
       55.17        70.03        60.76         1.71        24.33        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       15.58        35.64         0.79        17.88        18.08        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6771 TCGA-46-3768 
       18.84         8.48         7.00         6.02         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 
        0.95         0.59         0.39         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        0.10         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
        1.94        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
            0.43             0.10 
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
          115.59           173.79 
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
            7.82            17.98 
[1] "0.4 - 115.6 (7.8)"  "0.1 - 173.8 (18.0)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
  "PYHIN1 MUTATED"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
  "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
  "PYHIN1 MUTATED"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
  "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
  "PYHIN1 MUTATED"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
  "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
[1] "hr=" "1.6"
D76V2, continuous
D76V3, binary
                  cls
clus                 0   1
  PYHIN1 MUTATED     6   5
  PYHIN1 WILD-TYPE  41 126
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PYHIN1 MUTATED      6    5
  PYHIN1 WILD-TYPE   41  126
        clus
vv       PYHIN1 MUTATED PYHIN1 WILD-TYPE
  FEMALE              6               41
  MALE                5              126
D76V4, continuous
[1] "Remove cluster labels:" "PYHIN1 MUTATED"        
clus
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
               2               34 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4595       TCGA-22-4601       TCGA-22-4604 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5472       TCGA-22-5473       TCGA-22-5474 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5482 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-34-5234       TCGA-37-4135       TCGA-37-5819       TCGA-60-2698 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2715       TCGA-60-2725       TCGA-60-2726 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-70-6722       TCGA-70-6723 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  PYHIN1 MUTATED                                       1
  PYHIN1 WILD-TYPE                                     4
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  PYHIN1 MUTATED                                        0
  PYHIN1 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PYHIN1 MUTATED                                                            10
  PYHIN1 WILD-TYPE                                                         162
D76V5, multiclass
                                                             clus
vv                                                            PYHIN1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             10
                                                             clus
vv                                                            PYHIN1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              162
                  vv
clus                T1  T2  T3  T4
  PYHIN1 MUTATED     1   8   1   1
  PYHIN1 WILD-TYPE  35 108  13  11
D76V6, multiclass
    clus
vv   PYHIN1 MUTATED PYHIN1 WILD-TYPE
  T1              1               35
  T2              8              108
  T3              1               13
  T4              1               11
                  vv
clus                N0  N1  N2  N3
  PYHIN1 MUTATED     9   1   1   0
  PYHIN1 WILD-TYPE 108  38  16   5
D76V7, multiclass
    clus
vv   PYHIN1 MUTATED PYHIN1 WILD-TYPE
  N0              9              108
  N1              1               38
  N2              1               16
  N3              0                5
                  vv
clus                M0  M1  MX
  PYHIN1 MUTATED     9   0   1
  PYHIN1 WILD-TYPE 156   3   5
D76V8, multiclass
    clus
vv   PYHIN1 MUTATED PYHIN1 WILD-TYPE
  M0              9              156
  M1              0                3
  MX              1                5
                  vv
clus                I II III+IV
  PYHIN1 MUTATED    6  1      3
  PYHIN1 WILD-TYPE 91 37     38
D76V9, multiclass
        clus
vv       PYHIN1 MUTATED PYHIN1 WILD-TYPE
  I                   6               91
  II                  1               37
  III+IV              3               38
D76V10, binary
                  cls
clus                 0   1
  PYHIN1 MUTATED     0  11
  PYHIN1 WILD-TYPE   4 163
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PYHIN1 MUTATED      0   11
  PYHIN1 WILD-TYPE    4  163
     clus
vv    PYHIN1 MUTATED PYHIN1 WILD-TYPE
  NO               0                4
  YES             11              163
D76V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  PYHIN1 MUTATED                                             3
  PYHIN1 WILD-TYPE                                          91
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  PYHIN1 MUTATED                                        4              3
  PYHIN1 WILD-TYPE                                     39             25
                  vv
clus               LIFELONG NON-SMOKER
  PYHIN1 MUTATED                     1
  PYHIN1 WILD-TYPE                   7
D76V12, multiclass
                                             clus
vv                                            PYHIN1 MUTATED PYHIN1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              3               91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   4               39
  CURRENT SMOKER                                           3               25
  LIFELONG NON-SMOKER                                      1                7
D76V13, continuous
                  vv
clus                R0  R1  R2  RX
  PYHIN1 MUTATED    10   0   0   1
  PYHIN1 WILD-TYPE 137   2   4   9
D76V14, multiclass
    clus
vv   PYHIN1 MUTATED PYHIN1 WILD-TYPE
  R0             10              137
  R1              0                2
  R2              0                4
  RX              1                9

Clustering(77) Variable = CNTNAP4 MUTATION ANALYSIS
D77V1, survival
                   sevent
clus2                0  1
  CNTNAP4 MUTATED    9  6
  CNTNAP4 WILD-TYPE 88 64
  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
               15               152 
  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
                6                64 
$`CNTNAP4 MUTATED`
TCGA-18-3406 TCGA-18-3409 TCGA-22-0944 TCGA-22-4604 TCGA-22-4613 TCGA-22-5492 
       12.16        79.46         7.33        13.12        11.77        16.60 
TCGA-33-4532 TCGA-34-5231 TCGA-34-5928 TCGA-39-5027 TCGA-46-6025 TCGA-56-6545 
       82.98        50.24         5.52        60.76         0.95         2.04 
TCGA-60-2698 TCGA-60-2723 TCGA-66-2759 
       10.22        22.78        25.02 

$`CNTNAP4 WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
        4.47        81.07         4.80        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       21.57        10.82         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4607 
       20.45        35.08        24.13        38.17        34.75        19.30 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       31.69        64.90        63.52        14.60        44.22         0.79 
TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-33-4533 
       71.34        11.74        30.08        62.86        56.32       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 
       19.76         2.63        61.61        32.84        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 
        9.04        10.82         7.73        14.07        22.95         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 
       74.07        44.71        68.58        55.17        70.03         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6026 TCGA-51-4079 
        6.02         2.79         5.42         9.96         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6546 TCGA-60-2707 
        0.39         2.07        28.93         0.10         1.02        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2724 
       35.34        30.61         3.16        26.07        24.10         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
       23.64        11.77        16.96        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2763 
        2.01         0.92         0.99         0.99        20.98         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
             0.95              0.10 
  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
            82.98            173.79 
  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
            13.12             18.46 
[1] "0.9 - 83.0 (13.1)"  "0.1 - 173.8 (18.5)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "CNTNAP4 MUTATED"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "CNTNAP4 MUTATED"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "CNTNAP4 MUTATED"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
[1] "hr=" "1.1"
D77V2, continuous
D77V3, binary
                   cls
clus                  0   1
  CNTNAP4 MUTATED     5  11
  CNTNAP4 WILD-TYPE  42 120
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CNTNAP4 MUTATED      5   11
  CNTNAP4 WILD-TYPE   42  120
        clus
vv       CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  FEMALE               5                42
  MALE                11               120
D77V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  CNTNAP4 MUTATED                                       1
  CNTNAP4 WILD-TYPE                                     4
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  CNTNAP4 MUTATED                                        0
  CNTNAP4 WILD-TYPE                                      1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CNTNAP4 MUTATED                                                            15
  CNTNAP4 WILD-TYPE                                                         157
D77V5, multiclass
                                                             clus
vv                                                            CNTNAP4 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              15
                                                             clus
vv                                                            CNTNAP4 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               157
                   vv
clus                 T1  T2  T3  T4
  CNTNAP4 MUTATED     4  11   1   0
  CNTNAP4 WILD-TYPE  32 105  13  12
D77V6, multiclass
    clus
vv   CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  T1               4                32
  T2              11               105
  T3               1                13
  T4               0                12
                   vv
clus                 N0  N1  N2  N3
  CNTNAP4 MUTATED     9   5   2   0
  CNTNAP4 WILD-TYPE 108  34  15   5
D77V7, multiclass
    clus
vv   CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  N0               9               108
  N1               5                34
  N2               2                15
  N3               0                 5
                   vv
clus                 M0  M1  MX
  CNTNAP4 MUTATED    16   0   0
  CNTNAP4 WILD-TYPE 149   3   6
D77V8, multiclass
    clus
vv   CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  M0              16               149
  M1               0                 3
  MX               0                 6
                   vv
clus                 I II III+IV
  CNTNAP4 MUTATED    8  4      3
  CNTNAP4 WILD-TYPE 89 34     38
D77V9, multiclass
        clus
vv       CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  I                    8                89
  II                   4                34
  III+IV               3                38
D77V10, binary
                   cls
clus                  0   1
  CNTNAP4 MUTATED     0  16
  CNTNAP4 WILD-TYPE   4 158
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CNTNAP4 MUTATED      0   16
  CNTNAP4 WILD-TYPE    4  158
     clus
vv    CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  NO                0                 4
  YES              16               158
D77V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  CNTNAP4 MUTATED                                             7
  CNTNAP4 WILD-TYPE                                          87
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  CNTNAP4 MUTATED                                        4              3
  CNTNAP4 WILD-TYPE                                     39             25
                   vv
clus                LIFELONG NON-SMOKER
  CNTNAP4 MUTATED                     2
  CNTNAP4 WILD-TYPE                   6
D77V12, multiclass
                                             clus
vv                                            CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               7                87
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    4                39
  CURRENT SMOKER                                            3                25
  LIFELONG NON-SMOKER                                       2                 6
D77V13, continuous
                   vv
clus                 R0  R1  R2  RX
  CNTNAP4 MUTATED    12   0   0   2
  CNTNAP4 WILD-TYPE 135   2   4   8
D77V14, multiclass
    clus
vv   CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  R0              12               135
  R1               0                 2
  R2               0                 4
  RX               2                 8

Clustering(78) Variable = HRAS MUTATION ANALYSIS
D78V1, survival
                sevent
clus2             0  1
  HRAS MUTATED    3  2
  HRAS WILD-TYPE 94 68
  HRAS MUTATED HRAS WILD-TYPE 
             5            162 
  HRAS MUTATED HRAS WILD-TYPE 
             2             68 
$`HRAS MUTATED`
TCGA-18-3414 TCGA-21-5786 TCGA-34-2600 TCGA-34-5240 TCGA-66-2758 
       13.02        21.57        61.61         7.73        20.98 

$`HRAS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       29.85        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
        2.63        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
       10.82        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99         0.99        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  HRAS MUTATED HRAS WILD-TYPE 
          7.73           0.10 
  HRAS MUTATED HRAS WILD-TYPE 
         61.61         173.79 
  HRAS MUTATED HRAS WILD-TYPE 
         20.98          17.42 
[1] "7.7 - 61.6 (21.0)"  "0.1 - 173.8 (17.4)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE"   "HRAS MUTATED" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"HRAS WILD-TYPE" "HRAS WILD-TYPE"   "HRAS MUTATED" "HRAS WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE"   "HRAS MUTATED" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"HRAS WILD-TYPE" "HRAS WILD-TYPE"   "HRAS MUTATED" "HRAS WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"HRAS WILD-TYPE" "HRAS WILD-TYPE"   "HRAS MUTATED" "HRAS WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE"   "HRAS MUTATED" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"HRAS WILD-TYPE" "HRAS WILD-TYPE"   "HRAS MUTATED" "HRAS WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE"   "HRAS MUTATED" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"HRAS WILD-TYPE" "HRAS WILD-TYPE"   "HRAS MUTATED" "HRAS WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"HRAS WILD-TYPE" "HRAS WILD-TYPE"   "HRAS MUTATED" "HRAS WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE"   "HRAS MUTATED" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"HRAS WILD-TYPE" "HRAS WILD-TYPE"   "HRAS MUTATED" "HRAS WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE"   "HRAS MUTATED" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"HRAS WILD-TYPE" "HRAS WILD-TYPE"   "HRAS MUTATED" "HRAS WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"HRAS WILD-TYPE" "HRAS WILD-TYPE"   "HRAS MUTATED" "HRAS WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
[1] "hr=" "1.1"
D78V2, continuous
D78V3, binary
                cls
clus               0   1
  HRAS MUTATED     2   3
  HRAS WILD-TYPE  45 128
[1] "tbl2"
                cls
clus             [,1] [,2]
  HRAS MUTATED      2    3
  HRAS WILD-TYPE   45  128
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  FEMALE            2             45
  MALE              3            128
D78V4, continuous
[1] "Remove cluster labels:" "HRAS MUTATED"          
clus
  HRAS MUTATED HRAS WILD-TYPE 
             1             35 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3410     TCGA-18-3419 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5787     TCGA-22-4591     TCGA-22-4593 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-4595     TCGA-22-4599     TCGA-22-4601     TCGA-22-4604 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5472     TCGA-22-5473     TCGA-22-5474 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-5477     TCGA-22-5478     TCGA-22-5480     TCGA-22-5482 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-5485     TCGA-22-5489     TCGA-22-5491     TCGA-22-5492 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-34-5234     TCGA-37-4133     TCGA-37-4135     TCGA-37-5819 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-60-2698     TCGA-60-2712     TCGA-60-2715     TCGA-60-2725 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-60-2726     TCGA-70-6722     TCGA-70-6723 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
                vv
clus             LUNG BASALOID SQUAMOUS CELL CARCINOMA
  HRAS MUTATED                                       1
  HRAS WILD-TYPE                                     4
                vv
clus             LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  HRAS MUTATED                                        0
  HRAS WILD-TYPE                                      1
                vv
clus             LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  HRAS MUTATED                                                             4
  HRAS WILD-TYPE                                                         168
D78V5, multiclass
                                                             clus
vv                                                            HRAS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            4
                                                             clus
vv                                                            HRAS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            168
                vv
clus              T1  T2  T3  T4
  HRAS MUTATED     1   3   0   1
  HRAS WILD-TYPE  35 113  14  11
D78V6, multiclass
    clus
vv   HRAS MUTATED HRAS WILD-TYPE
  T1            1             35
  T2            3            113
  T3            0             14
  T4            1             11
                vv
clus              N0  N1  N2  N3
  HRAS MUTATED     3   2   0   0
  HRAS WILD-TYPE 114  37  17   5
D78V7, multiclass
    clus
vv   HRAS MUTATED HRAS WILD-TYPE
  N0            3            114
  N1            2             37
  N2            0             17
  N3            0              5
                vv
clus              M0  M1  MX
  HRAS MUTATED     4   1   0
  HRAS WILD-TYPE 161   2   6
D78V8, multiclass
    clus
vv   HRAS MUTATED HRAS WILD-TYPE
  M0            4            161
  M1            1              2
  MX            0              6
                vv
clus              I II III+IV
  HRAS MUTATED    3  1      1
  HRAS WILD-TYPE 94 37     40
D78V9, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  I                 3             94
  II                1             37
  III+IV            1             40
D78V10, binary
                cls
clus               0   1
  HRAS MUTATED     0   5
  HRAS WILD-TYPE   4 169
[1] "tbl2"
                cls
clus             [,1] [,2]
  HRAS MUTATED      0    5
  HRAS WILD-TYPE    4  169
     clus
vv    HRAS MUTATED HRAS WILD-TYPE
  NO             0              4
  YES            5            169
D78V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  HRAS MUTATED                                             3
  HRAS WILD-TYPE                                          91
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  HRAS MUTATED                                        0              2
  HRAS WILD-TYPE                                     43             26
                vv
clus             LIFELONG NON-SMOKER
  HRAS MUTATED                     0
  HRAS WILD-TYPE                   8
D78V12, multiclass
                                             clus
vv                                            HRAS MUTATED HRAS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            3             91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 0             43
  CURRENT SMOKER                                         2             26
  LIFELONG NON-SMOKER                                    0              8
D78V13, continuous
                vv
clus              R0  R1  R2  RX
  HRAS MUTATED     4   0   0   0
  HRAS WILD-TYPE 143   2   4  10
D78V14, multiclass
    clus
vv   HRAS MUTATED HRAS WILD-TYPE
  R0            4            143
  R1            0              2
  R2            0              4
  RX            0             10

Clustering(79) Variable = PRIM2 MUTATION ANALYSIS
D79V1, survival
                 sevent
clus2              0  1
  PRIM2 MUTATED    9  3
  PRIM2 WILD-TYPE 88 67
  PRIM2 MUTATED PRIM2 WILD-TYPE 
             12             155 
  PRIM2 MUTATED PRIM2 WILD-TYPE 
              3              67 
$`PRIM2 MUTATED`
TCGA-18-3409 TCGA-22-1002 TCGA-22-5480 TCGA-34-5239 TCGA-37-4133 TCGA-56-6546 
       79.46         4.31        71.34        10.82         7.82         1.02 
TCGA-60-2709 TCGA-60-2723 TCGA-66-2727 TCGA-66-2763 TCGA-66-2795 TCGA-85-6560 
       49.48        22.78        16.96         0.99         4.01         0.36 

$`PRIM2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1011 TCGA-22-1012 
       29.85        21.57        10.82         7.33         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       14.60        44.22         0.79        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        0.43         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-60-2698 
        0.39         2.07        28.93         0.10         2.04        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       21.70        68.45        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2724 
       35.34        30.61         3.16        26.07        24.10         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       23.64        11.77        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 
        0.92         0.99         0.99        20.98        25.02         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
        1.94        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 TCGA-85-6561 
       30.02        10.06        54.08        49.05         0.79 

  PRIM2 MUTATED PRIM2 WILD-TYPE 
           0.36            0.10 
  PRIM2 MUTATED PRIM2 WILD-TYPE 
          79.46          173.79 
  PRIM2 MUTATED PRIM2 WILD-TYPE 
           9.32           18.84 
[1] "0.4 - 79.5 (9.3)"   "0.1 - 173.8 (18.8)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
[1] "hr=" "1.5"
D79V2, continuous
D79V3, binary
                 cls
clus                0   1
  PRIM2 MUTATED     4   9
  PRIM2 WILD-TYPE  43 122
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRIM2 MUTATED      4    9
  PRIM2 WILD-TYPE   43  122
        clus
vv       PRIM2 MUTATED PRIM2 WILD-TYPE
  FEMALE             4              43
  MALE               9             122
D79V4, continuous
[1] "Remove cluster labels:" "PRIM2 MUTATED"         
clus
  PRIM2 MUTATED PRIM2 WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-4604      TCGA-22-4613      TCGA-22-5472      TCGA-22-5473 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5482 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4135      TCGA-37-5819      TCGA-60-2698 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2725      TCGA-60-2726 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  PRIM2 MUTATED                                       1
  PRIM2 WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  PRIM2 MUTATED                                        0
  PRIM2 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PRIM2 MUTATED                                                            12
  PRIM2 WILD-TYPE                                                         160
D79V5, multiclass
                                                             clus
vv                                                            PRIM2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            12
                                                             clus
vv                                                            PRIM2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             160
                 vv
clus               T1  T2  T3  T4
  PRIM2 MUTATED     4   6   0   3
  PRIM2 WILD-TYPE  32 110  14   9
D79V6, multiclass
    clus
vv   PRIM2 MUTATED PRIM2 WILD-TYPE
  T1             4              32
  T2             6             110
  T3             0              14
  T4             3               9
                 vv
clus               N0  N1  N2  N3
  PRIM2 MUTATED    11   2   0   0
  PRIM2 WILD-TYPE 106  37  17   5
D79V7, multiclass
    clus
vv   PRIM2 MUTATED PRIM2 WILD-TYPE
  N0            11             106
  N1             2              37
  N2             0              17
  N3             0               5
                 vv
clus               M0  M1  MX
  PRIM2 MUTATED    11   0   2
  PRIM2 WILD-TYPE 154   3   4
D79V8, multiclass
    clus
vv   PRIM2 MUTATED PRIM2 WILD-TYPE
  M0            11             154
  M1             0               3
  MX             2               4
                 vv
clus               I II III+IV
  PRIM2 MUTATED    7  0      4
  PRIM2 WILD-TYPE 90 38     37
D79V9, multiclass
        clus
vv       PRIM2 MUTATED PRIM2 WILD-TYPE
  I                  7              90
  II                 0              38
  III+IV             4              37
D79V10, binary
                 cls
clus                0   1
  PRIM2 MUTATED     0  13
  PRIM2 WILD-TYPE   4 161
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRIM2 MUTATED      0   13
  PRIM2 WILD-TYPE    4  161
     clus
vv    PRIM2 MUTATED PRIM2 WILD-TYPE
  NO              0               4
  YES            13             161
D79V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  PRIM2 MUTATED                                             8
  PRIM2 WILD-TYPE                                          86
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  PRIM2 MUTATED                                        2              2
  PRIM2 WILD-TYPE                                     41             26
                 vv
clus              LIFELONG NON-SMOKER
  PRIM2 MUTATED                     0
  PRIM2 WILD-TYPE                   8
D79V12, multiclass
                                             clus
vv                                            PRIM2 MUTATED PRIM2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             8              86
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0               8
D79V13, continuous
                 vv
clus               R0  R1  R2  RX
  PRIM2 MUTATED    11   0   0   0
  PRIM2 WILD-TYPE 136   2   4  10
D79V14, multiclass
    clus
vv   PRIM2 MUTATED PRIM2 WILD-TYPE
  R0            11             136
  R1             0               2
  R2             0               4
  RX             0              10

Clustering(80) Variable = SPOPL MUTATION ANALYSIS
D80V1, survival
                 sevent
clus2              0  1
  SPOPL MUTATED    4  2
  SPOPL WILD-TYPE 93 68
  SPOPL MUTATED SPOPL WILD-TYPE 
              6             161 
  SPOPL MUTATED SPOPL WILD-TYPE 
              2              68 
$`SPOPL MUTATED`
TCGA-33-4532 TCGA-37-5819 TCGA-66-2780 TCGA-66-2781 TCGA-66-2785 TCGA-66-2793 
       82.98         3.39        12.03         3.98         1.94        10.06 

$`SPOPL WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 
       38.17        34.75        13.12        19.30        11.77        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 
       64.90        63.52        14.60        44.22         0.79        71.34 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4533 
       11.74        30.08        62.86        56.32        16.60       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 
        5.52         4.96         3.95         0.43         7.82         6.81 
TCGA-37-4141 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        0.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
        8.48         7.00         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 
        0.95         0.59         0.39         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 
        0.10         2.04         1.02        10.22        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       30.61         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
       23.64        11.77        16.96        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2782 TCGA-66-2783 
       19.00         3.02         2.01        19.00        12.00        24.95 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  SPOPL MUTATED SPOPL WILD-TYPE 
           1.94            0.10 
  SPOPL MUTATED SPOPL WILD-TYPE 
          82.98          173.79 
  SPOPL MUTATED SPOPL WILD-TYPE 
           7.02           18.84 
[1] "1.9 - 83.0 (7.0)"   "0.1 - 173.8 (18.8)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"SPOPL WILD-TYPE"   "SPOPL MUTATED" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "SPOPL MUTATED" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE"   "SPOPL MUTATED"   "SPOPL MUTATED" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE"   "SPOPL MUTATED" "SPOPL WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"SPOPL WILD-TYPE"   "SPOPL MUTATED" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"SPOPL WILD-TYPE"   "SPOPL MUTATED" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "SPOPL MUTATED" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE"   "SPOPL MUTATED"   "SPOPL MUTATED" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE"   "SPOPL MUTATED" "SPOPL WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"SPOPL WILD-TYPE"   "SPOPL MUTATED" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"SPOPL WILD-TYPE"   "SPOPL MUTATED" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "SPOPL MUTATED" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE"   "SPOPL MUTATED"   "SPOPL MUTATED" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE"   "SPOPL MUTATED" "SPOPL WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"SPOPL WILD-TYPE"   "SPOPL MUTATED" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
[1] "hr=" "1.1"
D80V2, continuous
D80V3, binary
                 cls
clus                0   1
  SPOPL MUTATED     0   6
  SPOPL WILD-TYPE  47 125
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SPOPL MUTATED      0    6
  SPOPL WILD-TYPE   47  125
        clus
vv       SPOPL MUTATED SPOPL WILD-TYPE
  FEMALE             0              47
  MALE               6             125
D80V4, continuous
[1] "Remove cluster labels:" "SPOPL MUTATED"         
clus
  SPOPL MUTATED SPOPL WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-4604      TCGA-22-4613      TCGA-22-5472      TCGA-22-5473 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-5492      TCGA-34-5234      TCGA-37-4133      TCGA-37-4135 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  SPOPL MUTATED                                       0
  SPOPL WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  SPOPL MUTATED                                        0
  SPOPL WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SPOPL MUTATED                                                             6
  SPOPL WILD-TYPE                                                         166
D80V5, multiclass
                                                             clus
vv                                                            SPOPL MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             6
                                                             clus
vv                                                            SPOPL WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             166
                 vv
clus               T1  T2  T3  T4
  SPOPL MUTATED     0   5   0   1
  SPOPL WILD-TYPE  36 111  14  11
D80V6, multiclass
    clus
vv   SPOPL MUTATED SPOPL WILD-TYPE
  T1             0              36
  T2             5             111
  T3             0              14
  T4             1              11
                 vv
clus               N0  N1  N2  N3
  SPOPL MUTATED     4   1   1   0
  SPOPL WILD-TYPE 113  38  16   5
D80V7, multiclass
    clus
vv   SPOPL MUTATED SPOPL WILD-TYPE
  N0             4             113
  N1             1              38
  N2             1              16
  N3             0               5
                 vv
clus               M0  M1  MX
  SPOPL MUTATED     6   0   0
  SPOPL WILD-TYPE 159   3   6
D80V8, multiclass
    clus
vv   SPOPL MUTATED SPOPL WILD-TYPE
  M0             6             159
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  SPOPL MUTATED    4  0      2
  SPOPL WILD-TYPE 93 38     39
D80V9, multiclass
        clus
vv       SPOPL MUTATED SPOPL WILD-TYPE
  I                  4              93
  II                 0              38
  III+IV             2              39
D80V10, binary
                 cls
clus                0   1
  SPOPL MUTATED     0   6
  SPOPL WILD-TYPE   4 168
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SPOPL MUTATED      0    6
  SPOPL WILD-TYPE    4  168
     clus
vv    SPOPL MUTATED SPOPL WILD-TYPE
  NO              0               4
  YES             6             168
D80V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  SPOPL MUTATED                                             3
  SPOPL WILD-TYPE                                          91
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  SPOPL MUTATED                                        2              1
  SPOPL WILD-TYPE                                     41             27
                 vv
clus              LIFELONG NON-SMOKER
  SPOPL MUTATED                     0
  SPOPL WILD-TYPE                   8
D80V12, multiclass
                                             clus
vv                                            SPOPL MUTATED SPOPL WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D80V13, continuous
                 vv
clus               R0  R1  R2  RX
  SPOPL MUTATED     6   0   0   0
  SPOPL WILD-TYPE 141   2   4  10
D80V14, multiclass
    clus
vv   SPOPL MUTATED SPOPL WILD-TYPE
  R0             6             141
  R1             0               2
  R2             0               4
  RX             0              10

Clustering(81) Variable = GPC5 MUTATION ANALYSIS
D81V1, survival
                sevent
clus2             0  1
  GPC5 MUTATED    9  2
  GPC5 WILD-TYPE 88 68
  GPC5 MUTATED GPC5 WILD-TYPE 
            11            156 
  GPC5 MUTATED GPC5 WILD-TYPE 
             2             68 
$`GPC5 MUTATED`
TCGA-18-3409 TCGA-22-1016 TCGA-33-4532 TCGA-33-4583 TCGA-37-4133 TCGA-39-5016 
       79.46        27.02        82.98       141.34         7.82        74.07 
TCGA-43-3920 TCGA-60-2698 TCGA-66-2734 TCGA-66-2742 TCGA-66-2770 
       18.84        10.22        43.10        21.07        23.01 

$`GPC5 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       14.10        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       62.86        56.32        16.60       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      173.79       103.53        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5019 TCGA-39-5021 
        0.43         6.81         0.39         3.39        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
       27.35        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       11.57         8.48         7.00         6.02         2.79         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 
       28.93         0.10         2.04         1.02        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       30.61         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       23.64        11.77        16.96         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        1.02         2.01         2.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  GPC5 MUTATED GPC5 WILD-TYPE 
          7.82           0.10 
  GPC5 MUTATED GPC5 WILD-TYPE 
        141.34         173.79 
  GPC5 MUTATED GPC5 WILD-TYPE 
        27.020         15.565 
[1] "7.8 - 141.3 (27.0)" "0.1 - 173.8 (15.6)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE"   "GPC5 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
  "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE"   "GPC5 MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE"   "GPC5 MUTATED" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
  "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE"   "GPC5 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
  "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE"   "GPC5 MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE"   "GPC5 MUTATED" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
  "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE"   "GPC5 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
  "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE"   "GPC5 MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE"   "GPC5 MUTATED" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
  "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
[1] "hr=" "4.4"
D81V2, continuous
D81V3, binary
                cls
clus               0   1
  GPC5 MUTATED     1  10
  GPC5 WILD-TYPE  46 121
[1] "tbl2"
                cls
clus             [,1] [,2]
  GPC5 MUTATED      1   10
  GPC5 WILD-TYPE   46  121
        clus
vv       GPC5 MUTATED GPC5 WILD-TYPE
  FEMALE            1             46
  MALE             10            121
D81V4, continuous
[1] "Remove cluster labels:" "GPC5 MUTATED"          
clus
  GPC5 MUTATED GPC5 WILD-TYPE 
             2             34 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3410     TCGA-18-3414 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-18-3419     TCGA-21-5782     TCGA-21-5787     TCGA-22-4591 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-4593     TCGA-22-4595     TCGA-22-4599     TCGA-22-4601 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-4604     TCGA-22-4613     TCGA-22-5472     TCGA-22-5473 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-5492     TCGA-34-5234     TCGA-37-4135     TCGA-37-5819 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-60-2712     TCGA-60-2715     TCGA-60-2725     TCGA-60-2726 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-70-6722     TCGA-70-6723 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
                vv
clus             LUNG BASALOID SQUAMOUS CELL CARCINOMA
  GPC5 MUTATED                                       2
  GPC5 WILD-TYPE                                     3
                vv
clus             LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  GPC5 MUTATED                                        0
  GPC5 WILD-TYPE                                      1
                vv
clus             LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  GPC5 MUTATED                                                             9
  GPC5 WILD-TYPE                                                         163
D81V5, multiclass
                                                             clus
vv                                                            GPC5 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            9
                                                             clus
vv                                                            GPC5 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            163
                vv
clus              T1  T2  T3  T4
  GPC5 MUTATED     2   8   0   1
  GPC5 WILD-TYPE  34 108  14  11
D81V6, multiclass
    clus
vv   GPC5 MUTATED GPC5 WILD-TYPE
  T1            2             34
  T2            8            108
  T3            0             14
  T4            1             11
                vv
clus              N0  N1  N2  N3
  GPC5 MUTATED     8   3   0   0
  GPC5 WILD-TYPE 109  36  17   5
D81V7, multiclass
    clus
vv   GPC5 MUTATED GPC5 WILD-TYPE
  N0            8            109
  N1            3             36
  N2            0             17
  N3            0              5
                vv
clus              M0  M1  MX
  GPC5 MUTATED    10   1   0
  GPC5 WILD-TYPE 155   2   6
D81V8, multiclass
    clus
vv   GPC5 MUTATED GPC5 WILD-TYPE
  M0           10            155
  M1            1              2
  MX            0              6
                vv
clus              I II III+IV
  GPC5 MUTATED    6  2      2
  GPC5 WILD-TYPE 91 36     39
D81V9, multiclass
        clus
vv       GPC5 MUTATED GPC5 WILD-TYPE
  I                 6             91
  II                2             36
  III+IV            2             39
D81V10, binary
                cls
clus               0   1
  GPC5 MUTATED     0  11
  GPC5 WILD-TYPE   4 163
[1] "tbl2"
                cls
clus             [,1] [,2]
  GPC5 MUTATED      0   11
  GPC5 WILD-TYPE    4  163
     clus
vv    GPC5 MUTATED GPC5 WILD-TYPE
  NO             0              4
  YES           11            163
D81V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  GPC5 MUTATED                                             5
  GPC5 WILD-TYPE                                          89
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  GPC5 MUTATED                                        5              1
  GPC5 WILD-TYPE                                     38             27
                vv
clus             LIFELONG NON-SMOKER
  GPC5 MUTATED                     0
  GPC5 WILD-TYPE                   8
D81V12, multiclass
                                             clus
vv                                            GPC5 MUTATED GPC5 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            5             89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 5             38
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    0              8
D81V13, continuous
                vv
clus              R0  R1  R2  RX
  GPC5 MUTATED    10   0   0   1
  GPC5 WILD-TYPE 137   2   4   9
D81V14, multiclass
    clus
vv   GPC5 MUTATED GPC5 WILD-TYPE
  R0           10            137
  R1            0              2
  R2            0              4
  RX            1              9

Clustering(82) Variable = HLA-A MUTATION ANALYSIS
D82V1, survival
                 sevent
clus2              0  1
  HLA-A MUTATED    4  2
  HLA-A WILD-TYPE 93 68
  HLA-A MUTATED HLA-A WILD-TYPE 
              6             161 
  HLA-A MUTATED HLA-A WILD-TYPE 
              2              68 
$`HLA-A MUTATED`
TCGA-18-3419 TCGA-21-5782 TCGA-37-5819 TCGA-39-5024 TCGA-60-2698 TCGA-66-2786 
        1.61        31.63         3.39        70.03        10.22        25.97 

$`HLA-A WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 
       11.34        13.02        59.51        28.34        24.92        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5784 
       46.88        60.89        34.78        15.55         9.30        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5027 TCGA-39-5028 
       74.07        44.71        68.58        55.17        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
        1.02        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  HLA-A MUTATED HLA-A WILD-TYPE 
           1.61            0.10 
  HLA-A MUTATED HLA-A WILD-TYPE 
          70.03          173.79 
  HLA-A MUTATED HLA-A WILD-TYPE 
         18.095          17.880 
[1] "1.6 - 70.0 (18.1)"  "0.1 - 173.8 (17.9)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE"   "HLA-A MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"HLA-A WILD-TYPE"   "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"HLA-A WILD-TYPE"   "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE"   "HLA-A MUTATED" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE"   "HLA-A MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"HLA-A WILD-TYPE"   "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"HLA-A WILD-TYPE"   "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE"   "HLA-A MUTATED" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE"   "HLA-A MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"HLA-A WILD-TYPE"   "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"HLA-A WILD-TYPE"   "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE"   "HLA-A MUTATED" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
[1] "hr=" "1.2"
D82V2, continuous
D82V3, binary
                 cls
clus                0   1
  HLA-A MUTATED     3   3
  HLA-A WILD-TYPE  44 128
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HLA-A MUTATED      3    3
  HLA-A WILD-TYPE   44  128
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  FEMALE             3              44
  MALE               3             128
D82V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  HLA-A MUTATED                                       0
  HLA-A WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  HLA-A MUTATED                                        0
  HLA-A WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  HLA-A MUTATED                                                             6
  HLA-A WILD-TYPE                                                         166
D82V5, multiclass
                                                             clus
vv                                                            HLA-A MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             6
                                                             clus
vv                                                            HLA-A WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             166
                 vv
clus               T1  T2  T3  T4
  HLA-A MUTATED     1   5   0   0
  HLA-A WILD-TYPE  35 111  14  12
D82V6, multiclass
    clus
vv   HLA-A MUTATED HLA-A WILD-TYPE
  T1             1              35
  T2             5             111
  T3             0              14
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  HLA-A MUTATED     2   2   2   0
  HLA-A WILD-TYPE 115  37  15   5
D82V7, multiclass
    clus
vv   HLA-A MUTATED HLA-A WILD-TYPE
  N0             2             115
  N1             2              37
  N2             2              15
  N3             0               5
                 vv
clus               M0  M1  MX
  HLA-A MUTATED     6   0   0
  HLA-A WILD-TYPE 159   3   6
D82V8, multiclass
    clus
vv   HLA-A MUTATED HLA-A WILD-TYPE
  M0             6             159
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  HLA-A MUTATED    2  2      2
  HLA-A WILD-TYPE 95 36     39
D82V9, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  I                  2              95
  II                 2              36
  III+IV             2              39
D82V10, binary
                 cls
clus                0   1
  HLA-A MUTATED     0   6
  HLA-A WILD-TYPE   4 168
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HLA-A MUTATED      0    6
  HLA-A WILD-TYPE    4  168
     clus
vv    HLA-A MUTATED HLA-A WILD-TYPE
  NO              0               4
  YES             6             168
D82V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  HLA-A MUTATED                                             5
  HLA-A WILD-TYPE                                          89
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  HLA-A MUTATED                                        1              0
  HLA-A WILD-TYPE                                     42             28
                 vv
clus              LIFELONG NON-SMOKER
  HLA-A MUTATED                     0
  HLA-A WILD-TYPE                   8
D82V12, multiclass
                                             clus
vv                                            HLA-A MUTATED HLA-A WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              42
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     0               8
D82V13, continuous
                 vv
clus               R0  R1  R2  RX
  HLA-A MUTATED     5   0   0   1
  HLA-A WILD-TYPE 142   2   4   9
D82V14, multiclass
    clus
vv   HLA-A MUTATED HLA-A WILD-TYPE
  R0             5             142
  R1             0               2
  R2             0               4
  RX             1               9

Clustering(83) Variable = OR5AC2 MUTATION ANALYSIS
D83V1, survival
                  sevent
clus2               0  1
  OR5AC2 MUTATED    3  4
  OR5AC2 WILD-TYPE 94 66
  OR5AC2 MUTATED OR5AC2 WILD-TYPE 
               7              160 
  OR5AC2 MUTATED OR5AC2 WILD-TYPE 
               4               66 
$`OR5AC2 MUTATED`
TCGA-18-3409 TCGA-18-3410 TCGA-33-4582 TCGA-34-5236 TCGA-39-5027 TCGA-66-2742 
       79.46         4.80       103.53         9.04        60.76        21.07 
TCGA-66-2773 
        3.02 

$`OR5AC2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
       12.16         4.47        81.07        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
       43.10       173.79       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 
       61.61        32.84        50.24        51.78        32.68        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 
       44.71        68.58        55.17        70.03         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
       43.10         0.99         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
        2.01        23.01        19.00         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  OR5AC2 MUTATED OR5AC2 WILD-TYPE 
            3.02             0.10 
  OR5AC2 MUTATED OR5AC2 WILD-TYPE 
          103.53           173.79 
  OR5AC2 MUTATED OR5AC2 WILD-TYPE 
           21.07            17.42 
[1] "3.0 - 103.5 (21.1)" "0.1 - 173.8 (17.4)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
  "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
  "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
  "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
  "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
  "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
  "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
[1] "hr=" "1.1"
D83V2, continuous
D83V3, binary
                  cls
clus                 0   1
  OR5AC2 MUTATED     0   7
  OR5AC2 WILD-TYPE  47 124
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5AC2 MUTATED      0    7
  OR5AC2 WILD-TYPE   47  124
        clus
vv       OR5AC2 MUTATED OR5AC2 WILD-TYPE
  FEMALE              0               47
  MALE                7              124
D83V4, continuous
[1] "Remove cluster labels:" "OR5AC2 MUTATED"        
clus
  OR5AC2 MUTATED OR5AC2 WILD-TYPE 
               1               35 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3414       TCGA-18-3419 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5787       TCGA-22-4591       TCGA-22-4593 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-4595       TCGA-22-4599       TCGA-22-4601       TCGA-22-4604 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5472       TCGA-22-5473       TCGA-22-5474 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5482 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-34-5234       TCGA-37-4133       TCGA-37-4135       TCGA-37-5819 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-60-2698       TCGA-60-2712       TCGA-60-2715       TCGA-60-2725 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-60-2726       TCGA-70-6722       TCGA-70-6723 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR5AC2 MUTATED                                       1
  OR5AC2 WILD-TYPE                                     4
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR5AC2 MUTATED                                        0
  OR5AC2 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR5AC2 MUTATED                                                             6
  OR5AC2 WILD-TYPE                                                         166
D83V5, multiclass
                                                             clus
vv                                                            OR5AC2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              6
                                                             clus
vv                                                            OR5AC2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              166
                  vv
clus                T1  T2  T3  T4
  OR5AC2 MUTATED     2   3   2   0
  OR5AC2 WILD-TYPE  34 113  12  12
D83V6, multiclass
    clus
vv   OR5AC2 MUTATED OR5AC2 WILD-TYPE
  T1              2               34
  T2              3              113
  T3              2               12
  T4              0               12
                  vv
clus                N0  N1  N2  N3
  OR5AC2 MUTATED     6   1   0   0
  OR5AC2 WILD-TYPE 111  38  17   5
D83V7, multiclass
    clus
vv   OR5AC2 MUTATED OR5AC2 WILD-TYPE
  N0              6              111
  N1              1               38
  N2              0               17
  N3              0                5
                  vv
clus                M0  M1  MX
  OR5AC2 MUTATED     6   1   0
  OR5AC2 WILD-TYPE 159   2   6
D83V8, multiclass
    clus
vv   OR5AC2 MUTATED OR5AC2 WILD-TYPE
  M0              6              159
  M1              1                2
  MX              0                6
                  vv
clus                I II III+IV
  OR5AC2 MUTATED    3  1      2
  OR5AC2 WILD-TYPE 94 37     39
D83V9, multiclass
        clus
vv       OR5AC2 MUTATED OR5AC2 WILD-TYPE
  I                   3               94
  II                  1               37
  III+IV              2               39
D83V10, binary
                  cls
clus                 0   1
  OR5AC2 MUTATED     0   7
  OR5AC2 WILD-TYPE   4 167
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5AC2 MUTATED      0    7
  OR5AC2 WILD-TYPE    4  167
     clus
vv    OR5AC2 MUTATED OR5AC2 WILD-TYPE
  NO               0                4
  YES              7              167
D83V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR5AC2 MUTATED                                             1
  OR5AC2 WILD-TYPE                                          93
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR5AC2 MUTATED                                        4              1
  OR5AC2 WILD-TYPE                                     39             27
                  vv
clus               LIFELONG NON-SMOKER
  OR5AC2 MUTATED                     0
  OR5AC2 WILD-TYPE                   8
D83V12, multiclass
                                             clus
vv                                            OR5AC2 MUTATED OR5AC2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              1               93
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   4               39
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0                8
D83V13, continuous
                  vv
clus                R0  R1  R2  RX
  OR5AC2 MUTATED     6   0   0   0
  OR5AC2 WILD-TYPE 141   2   4  10
D83V14, multiclass
    clus
vv   OR5AC2 MUTATED OR5AC2 WILD-TYPE
  R0              6              141
  R1              0                2
  R2              0                4
  RX              0               10

Clustering(84) Variable = GABRA2 MUTATION ANALYSIS
D84V1, survival
                  sevent
clus2               0  1
  GABRA2 MUTATED    9  2
  GABRA2 WILD-TYPE 88 68
  GABRA2 MUTATED GABRA2 WILD-TYPE 
              11              156 
  GABRA2 MUTATED GABRA2 WILD-TYPE 
               2               68 
$`GABRA2 MUTATED`
TCGA-18-3409 TCGA-21-1081 TCGA-21-5786 TCGA-34-5231 TCGA-34-5232 TCGA-60-2698 
       79.46         9.30        21.57        50.24        51.78        10.22 
TCGA-66-2744 TCGA-66-2757 TCGA-66-2777 TCGA-66-2783 TCGA-66-2787 
        0.99         0.99         2.01        24.95        40.01 

$`GABRA2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-5782 TCGA-21-5784 
       46.88        60.89        34.78        15.55        31.63        29.85 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       61.61        32.84        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         4.96         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2759 
       21.07         2.01         0.92         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
       19.00         3.02        19.00        12.03         3.98        12.00 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
        1.94        25.97        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  GABRA2 MUTATED GABRA2 WILD-TYPE 
            0.99             0.10 
  GABRA2 MUTATED GABRA2 WILD-TYPE 
           79.46           173.79 
  GABRA2 MUTATED GABRA2 WILD-TYPE 
           21.57            17.42 
[1] "1.0 - 79.5 (21.6)"  "0.1 - 173.8 (17.4)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE"   "GABRA2 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE"   "GABRA2 MUTATED" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
  "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE"   "GABRA2 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE"   "GABRA2 MUTATED" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
  "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE"   "GABRA2 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE"   "GABRA2 MUTATED" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
  "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
[1] "hr=" "2.4"
D84V2, continuous
D84V3, binary
                  cls
clus                 0   1
  GABRA2 MUTATED     2  10
  GABRA2 WILD-TYPE  45 121
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRA2 MUTATED      2   10
  GABRA2 WILD-TYPE   45  121
        clus
vv       GABRA2 MUTATED GABRA2 WILD-TYPE
  FEMALE              2               45
  MALE               10              121
D84V4, continuous
[1] "Remove cluster labels:" "GABRA2 MUTATED"        
clus
  GABRA2 MUTATED GABRA2 WILD-TYPE 
               1               35 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4595       TCGA-22-4599       TCGA-22-4601 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-4604       TCGA-22-4613       TCGA-22-5472       TCGA-22-5473 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-5492       TCGA-34-5234       TCGA-37-4133       TCGA-37-4135 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-37-5819       TCGA-60-2712       TCGA-60-2715       TCGA-60-2725 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-60-2726       TCGA-70-6722       TCGA-70-6723 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  GABRA2 MUTATED                                       1
  GABRA2 WILD-TYPE                                     4
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  GABRA2 MUTATED                                        0
  GABRA2 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  GABRA2 MUTATED                                                            11
  GABRA2 WILD-TYPE                                                         161
D84V5, multiclass
                                                             clus
vv                                                            GABRA2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             11
                                                             clus
vv                                                            GABRA2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              161
                  vv
clus                T1  T2  T3  T4
  GABRA2 MUTATED     5   7   0   0
  GABRA2 WILD-TYPE  31 109  14  12
D84V6, multiclass
    clus
vv   GABRA2 MUTATED GABRA2 WILD-TYPE
  T1              5               31
  T2              7              109
  T3              0               14
  T4              0               12
                  vv
clus                N0  N1  N2  N3
  GABRA2 MUTATED     7   4   0   1
  GABRA2 WILD-TYPE 110  35  17   4
D84V7, multiclass
    clus
vv   GABRA2 MUTATED GABRA2 WILD-TYPE
  N0              7              110
  N1              4               35
  N2              0               17
  N3              1                4
                  vv
clus                M0  M1  MX
  GABRA2 MUTATED    12   0   0
  GABRA2 WILD-TYPE 153   3   6
D84V8, multiclass
    clus
vv   GABRA2 MUTATED GABRA2 WILD-TYPE
  M0             12              153
  M1              0                3
  MX              0                6
                  vv
clus                I II III+IV
  GABRA2 MUTATED    5  5      1
  GABRA2 WILD-TYPE 92 33     40
D84V9, multiclass
        clus
vv       GABRA2 MUTATED GABRA2 WILD-TYPE
  I                   5               92
  II                  5               33
  III+IV              1               40
D84V10, binary
                  cls
clus                 0   1
  GABRA2 MUTATED     0  12
  GABRA2 WILD-TYPE   4 162
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRA2 MUTATED      0   12
  GABRA2 WILD-TYPE    4  162
     clus
vv    GABRA2 MUTATED GABRA2 WILD-TYPE
  NO               0                4
  YES             12              162
D84V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  GABRA2 MUTATED                                             8
  GABRA2 WILD-TYPE                                          86
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  GABRA2 MUTATED                                        1              1
  GABRA2 WILD-TYPE                                     42             27
                  vv
clus               LIFELONG NON-SMOKER
  GABRA2 MUTATED                     1
  GABRA2 WILD-TYPE                   7
D84V12, multiclass
                                             clus
vv                                            GABRA2 MUTATED GABRA2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              8               86
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               42
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      1                7
D84V13, continuous
                  vv
clus                R0  R1  R2  RX
  GABRA2 MUTATED     8   0   1   1
  GABRA2 WILD-TYPE 139   2   3   9
D84V14, multiclass
    clus
vv   GABRA2 MUTATED GABRA2 WILD-TYPE
  R0              8              139
  R1              0                2
  R2              1                3
  RX              1                9

Clustering(85) Variable = GBA3 MUTATION ANALYSIS
D85V1, survival
                sevent
clus2             0  1
  GBA3 MUTATED    6  2
  GBA3 WILD-TYPE 91 68
  GBA3 MUTATED GBA3 WILD-TYPE 
             8            159 
  GBA3 MUTATED GBA3 WILD-TYPE 
             2             68 
$`GBA3 MUTATED`
TCGA-18-3409 TCGA-18-3416 TCGA-18-4086 TCGA-21-5786 TCGA-39-5037 TCGA-43-5668 
       79.46        28.34         2.79        21.57         0.79         8.48 
TCGA-51-4080 TCGA-66-2757 
        0.39         0.99 

$`GBA3 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        24.92         1.61        43.76         6.15 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 
       90.51         3.02        27.16       115.59        46.88        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5787 
       34.78        15.55         9.30        31.63        29.85        10.82 
TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 
        7.33         4.31         1.74        14.10        27.02        20.45 
TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 
       35.08        24.13        38.17        34.75        13.12        19.30 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
        0.79        71.34        11.74        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 
       24.33         1.94        27.35        15.58        35.64        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       18.08        11.57        18.84         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 
        5.42         9.96         0.95         0.59         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 
       28.93         0.10         2.04         1.02        10.22        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2759 
        0.99         2.01         0.92         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  GBA3 MUTATED GBA3 WILD-TYPE 
          0.39           0.10 
  GBA3 MUTATED GBA3 WILD-TYPE 
         79.46         173.79 
  GBA3 MUTATED GBA3 WILD-TYPE 
         5.635         18.080 
[1] "0.4 - 79.5 (5.6)"   "0.1 - 173.8 (18.1)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
[1] "hr=" "1.2"
D85V2, continuous
D85V3, binary
                cls
clus               0   1
  GBA3 MUTATED     1   8
  GBA3 WILD-TYPE  46 123
[1] "tbl2"
                cls
clus             [,1] [,2]
  GBA3 MUTATED      1    8
  GBA3 WILD-TYPE   46  123
        clus
vv       GBA3 MUTATED GBA3 WILD-TYPE
  FEMALE            1             46
  MALE              8            123
D85V4, continuous
                vv
clus             LUNG BASALOID SQUAMOUS CELL CARCINOMA
  GBA3 MUTATED                                       2
  GBA3 WILD-TYPE                                     3
                vv
clus             LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  GBA3 MUTATED                                        0
  GBA3 WILD-TYPE                                      1
                vv
clus             LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  GBA3 MUTATED                                                             7
  GBA3 WILD-TYPE                                                         165
D85V5, multiclass
                                                             clus
vv                                                            GBA3 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            7
                                                             clus
vv                                                            GBA3 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            165
                vv
clus              T1  T2  T3  T4
  GBA3 MUTATED     4   4   0   1
  GBA3 WILD-TYPE  32 112  14  11
D85V6, multiclass
    clus
vv   GBA3 MUTATED GBA3 WILD-TYPE
  T1            4             32
  T2            4            112
  T3            0             14
  T4            1             11
                vv
clus              N0  N1  N2  N3
  GBA3 MUTATED     5   4   0   0
  GBA3 WILD-TYPE 112  35  17   5
D85V7, multiclass
    clus
vv   GBA3 MUTATED GBA3 WILD-TYPE
  N0            5            112
  N1            4             35
  N2            0             17
  N3            0              5
                vv
clus              M0  M1  MX
  GBA3 MUTATED     8   0   0
  GBA3 WILD-TYPE 157   3   6
D85V8, multiclass
    clus
vv   GBA3 MUTATED GBA3 WILD-TYPE
  M0            8            157
  M1            0              3
  MX            0              6
                vv
clus              I II III+IV
  GBA3 MUTATED    4  3      1
  GBA3 WILD-TYPE 93 35     40
D85V9, multiclass
        clus
vv       GBA3 MUTATED GBA3 WILD-TYPE
  I                 4             93
  II                3             35
  III+IV            1             40
D85V10, binary
                cls
clus               0   1
  GBA3 MUTATED     0   9
  GBA3 WILD-TYPE   4 165
[1] "tbl2"
                cls
clus             [,1] [,2]
  GBA3 MUTATED      0    9
  GBA3 WILD-TYPE    4  165
     clus
vv    GBA3 MUTATED GBA3 WILD-TYPE
  NO             0              4
  YES            9            165
D85V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  GBA3 MUTATED                                             4
  GBA3 WILD-TYPE                                          90
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  GBA3 MUTATED                                        3              2
  GBA3 WILD-TYPE                                     40             26
                vv
clus             LIFELONG NON-SMOKER
  GBA3 MUTATED                     0
  GBA3 WILD-TYPE                   8
D85V12, multiclass
                                             clus
vv                                            GBA3 MUTATED GBA3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            4             90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 3             40
  CURRENT SMOKER                                         2             26
  LIFELONG NON-SMOKER                                    0              8
D85V13, continuous
                vv
clus              R0  R1  R2  RX
  GBA3 MUTATED     8   0   0   0
  GBA3 WILD-TYPE 139   2   4  10
D85V14, multiclass
    clus
vv   GBA3 MUTATED GBA3 WILD-TYPE
  R0            8            139
  R1            0              2
  R2            0              4
  RX            0             10

Clustering(86) Variable = KIRREL2 MUTATION ANALYSIS
D86V1, survival
                   sevent
clus2                0  1
  KIRREL2 MUTATED    7  4
  KIRREL2 WILD-TYPE 90 66
  KIRREL2 MUTATED KIRREL2 WILD-TYPE 
               11               156 
  KIRREL2 MUTATED KIRREL2 WILD-TYPE 
                4                66 
$`KIRREL2 MUTATED`
TCGA-18-3409 TCGA-18-3421 TCGA-18-5592 TCGA-22-4595 TCGA-33-4566 TCGA-33-4586 
       79.46        43.76         3.02        24.13       173.79        14.07 
TCGA-34-5240 TCGA-43-6647 TCGA-51-4081 TCGA-60-2698 TCGA-60-2723 
        7.73         6.02         2.07        10.22        22.78 

$`KIRREL2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-4083 
       13.02        59.51        28.34        24.92         1.61         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 
        2.79        90.51        27.16       115.59        46.88        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 
       34.78        15.55         9.30        31.63        29.85        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 
       20.45        35.08        38.17        34.75        13.12        19.30 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
        0.79        71.34        11.74        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 
       16.60        82.98       114.05        97.94        43.10       103.53 
TCGA-33-4583 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 
      141.34        19.76         2.63        61.61        32.84        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5241 TCGA-34-5927 
       51.78        32.68         9.04        10.82        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 
        5.52         4.96         3.95         0.43         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        0.39         3.39        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.76         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       15.58        35.64         0.79        17.88        18.08        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
       18.84         8.48         7.00         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-56-1622 TCGA-56-5897 
        0.95         0.59         0.39         0.39        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        2.04         1.02        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       26.07        24.10         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  KIRREL2 MUTATED KIRREL2 WILD-TYPE 
             2.07              0.10 
  KIRREL2 MUTATED KIRREL2 WILD-TYPE 
           173.79            141.34 
  KIRREL2 MUTATED KIRREL2 WILD-TYPE 
            14.07             17.98 
[1] "2.1 - 173.8 (14.1)" "0.1 - 141.3 (18.0)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
[1] "hr=" "1.8"
D86V2, continuous
D86V3, binary
                   cls
clus                  0   1
  KIRREL2 MUTATED     3   8
  KIRREL2 WILD-TYPE  44 123
[1] "tbl2"
                   cls
clus                [,1] [,2]
  KIRREL2 MUTATED      3    8
  KIRREL2 WILD-TYPE   44  123
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  FEMALE               3                44
  MALE                 8               123
D86V4, continuous
[1] "Remove cluster labels:" "KIRREL2 MUTATED"       
clus
  KIRREL2 MUTATED KIRREL2 WILD-TYPE 
                2                34 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3410        TCGA-18-3414 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-18-3419        TCGA-21-5782        TCGA-21-5787        TCGA-22-4591 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-4593        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5480        TCGA-22-5482 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-34-5234        TCGA-37-4133        TCGA-37-4135        TCGA-37-5819 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2715        TCGA-60-2725        TCGA-60-2726 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-70-6722        TCGA-70-6723 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  KIRREL2 MUTATED                                       2
  KIRREL2 WILD-TYPE                                     3
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  KIRREL2 MUTATED                                        0
  KIRREL2 WILD-TYPE                                      1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  KIRREL2 MUTATED                                                             9
  KIRREL2 WILD-TYPE                                                         163
D86V5, multiclass
                                                             clus
vv                                                            KIRREL2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               9
                                                             clus
vv                                                            KIRREL2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               163
                   vv
clus                 T1  T2  T3  T4
  KIRREL2 MUTATED     1   8   2   0
  KIRREL2 WILD-TYPE  35 108  12  12
D86V6, multiclass
    clus
vv   KIRREL2 MUTATED KIRREL2 WILD-TYPE
  T1               1                35
  T2               8               108
  T3               2                12
  T4               0                12
                   vv
clus                 N0  N1  N2  N3
  KIRREL2 MUTATED     5   4   2   0
  KIRREL2 WILD-TYPE 112  35  15   5
D86V7, multiclass
    clus
vv   KIRREL2 MUTATED KIRREL2 WILD-TYPE
  N0               5               112
  N1               4                35
  N2               2                15
  N3               0                 5
                   vv
clus                 M0  M1  MX
  KIRREL2 MUTATED     9   0   1
  KIRREL2 WILD-TYPE 156   3   5
D86V8, multiclass
    clus
vv   KIRREL2 MUTATED KIRREL2 WILD-TYPE
  M0               9               156
  M1               0                 3
  MX               1                 5
                   vv
clus                 I II III+IV
  KIRREL2 MUTATED    3  5      2
  KIRREL2 WILD-TYPE 94 33     39
D86V9, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  I                    3                94
  II                   5                33
  III+IV               2                39
D86V10, binary
                   cls
clus                  0   1
  KIRREL2 MUTATED     1  10
  KIRREL2 WILD-TYPE   3 164
[1] "tbl2"
                   cls
clus                [,1] [,2]
  KIRREL2 MUTATED      1   10
  KIRREL2 WILD-TYPE    3  164
     clus
vv    KIRREL2 MUTATED KIRREL2 WILD-TYPE
  NO                1                 3
  YES              10               164
D86V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  KIRREL2 MUTATED                                             5
  KIRREL2 WILD-TYPE                                          89
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  KIRREL2 MUTATED                                        2              4
  KIRREL2 WILD-TYPE                                     41             24
                   vv
clus                LIFELONG NON-SMOKER
  KIRREL2 MUTATED                     0
  KIRREL2 WILD-TYPE                   8
D86V12, multiclass
                                             clus
vv                                            KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               5                89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                41
  CURRENT SMOKER                                            4                24
  LIFELONG NON-SMOKER                                       0                 8
D86V13, continuous
                   vv
clus                 R0  R1  R2  RX
  KIRREL2 MUTATED     7   0   0   2
  KIRREL2 WILD-TYPE 140   2   4   8
D86V14, multiclass
    clus
vv   KIRREL2 MUTATED KIRREL2 WILD-TYPE
  R0               7               140
  R1               0                 2
  R2               0                 4
  RX               2                 8

Clustering(87) Variable = MS4A14 MUTATION ANALYSIS
D87V1, survival
                  sevent
clus2               0  1
  MS4A14 MUTATED    6  6
  MS4A14 WILD-TYPE 91 64
  MS4A14 MUTATED MS4A14 WILD-TYPE 
              12              155 
  MS4A14 MUTATED MS4A14 WILD-TYPE 
               6               64 
$`MS4A14 MUTATED`
TCGA-18-3409 TCGA-18-3415 TCGA-18-4083 TCGA-22-4595 TCGA-22-4604 TCGA-22-4613 
       79.46        59.51         6.15        24.13        13.12        11.77 
TCGA-39-5021 TCGA-43-3920 TCGA-43-5668 TCGA-60-2726 TCGA-66-2763 TCGA-66-2788 
       68.58        18.84         8.48        11.77         0.99        22.98 

$`MS4A14 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 
       13.02        28.34        24.92         1.61        43.76         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 
       90.51         3.02        27.16       115.59        46.88        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 
       34.78        15.55         9.30        31.63        29.85        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4599 TCGA-22-4601 TCGA-22-4607 TCGA-22-5471 
       20.45        35.08        38.17        34.75        19.30        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 
       64.90        63.52        14.60        44.22         0.79        71.34 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       11.74        30.08        62.86        56.32        16.60        82.98 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
      114.05        97.94        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 
       14.07        19.76         2.63        61.61        32.84        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
       22.95         5.52         4.96         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5022 
        6.81         0.39         3.39        74.07        44.71        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.76         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       15.58        35.64         0.79        17.88        18.08        11.57 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 
        0.99         0.99        20.98        25.02         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       25.97        40.01         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  MS4A14 MUTATED MS4A14 WILD-TYPE 
            0.99             0.10 
  MS4A14 MUTATED MS4A14 WILD-TYPE 
           79.46           173.79 
  MS4A14 MUTATED MS4A14 WILD-TYPE 
           15.98            17.88 
[1] "1.0 - 79.5 (16.0)"  "0.1 - 173.8 (17.9)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
  "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"MS4A14 WILD-TYPE"   "MS4A14 MUTATED"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
  "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
  "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"MS4A14 WILD-TYPE"   "MS4A14 MUTATED"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
  "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
  "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"MS4A14 WILD-TYPE"   "MS4A14 MUTATED"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
  "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
[1] "hr=" "1.1"
D87V2, continuous
D87V3, binary
                  cls
clus                 0   1
  MS4A14 MUTATED     2  10
  MS4A14 WILD-TYPE  45 121
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MS4A14 MUTATED      2   10
  MS4A14 WILD-TYPE   45  121
        clus
vv       MS4A14 MUTATED MS4A14 WILD-TYPE
  FEMALE              2               45
  MALE               10              121
D87V4, continuous
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  MS4A14 MUTATED                                       1
  MS4A14 WILD-TYPE                                     4
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  MS4A14 MUTATED                                        0
  MS4A14 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  MS4A14 MUTATED                                                            11
  MS4A14 WILD-TYPE                                                         161
D87V5, multiclass
                                                             clus
vv                                                            MS4A14 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             11
                                                             clus
vv                                                            MS4A14 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              161
                  vv
clus                T1  T2  T3  T4
  MS4A14 MUTATED     3   8   1   0
  MS4A14 WILD-TYPE  33 108  13  12
D87V6, multiclass
    clus
vv   MS4A14 MUTATED MS4A14 WILD-TYPE
  T1              3               33
  T2              8              108
  T3              1               13
  T4              0               12
                  vv
clus                N0  N1  N2  N3
  MS4A14 MUTATED     7   4   1   0
  MS4A14 WILD-TYPE 110  35  16   5
D87V7, multiclass
    clus
vv   MS4A14 MUTATED MS4A14 WILD-TYPE
  N0              7              110
  N1              4               35
  N2              1               16
  N3              0                5
                  vv
clus                M0  M1  MX
  MS4A14 MUTATED    11   0   0
  MS4A14 WILD-TYPE 154   3   6
D87V8, multiclass
    clus
vv   MS4A14 MUTATED MS4A14 WILD-TYPE
  M0             11              154
  M1              0                3
  MX              0                6
                  vv
clus                I II III+IV
  MS4A14 MUTATED    6  4      1
  MS4A14 WILD-TYPE 91 34     40
D87V9, multiclass
        clus
vv       MS4A14 MUTATED MS4A14 WILD-TYPE
  I                   6               91
  II                  4               34
  III+IV              1               40
D87V10, binary
                  cls
clus                 0   1
  MS4A14 MUTATED     1  11
  MS4A14 WILD-TYPE   3 163
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MS4A14 MUTATED      1   11
  MS4A14 WILD-TYPE    3  163
     clus
vv    MS4A14 MUTATED MS4A14 WILD-TYPE
  NO               1                3
  YES             11              163
D87V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  MS4A14 MUTATED                                             4
  MS4A14 WILD-TYPE                                          90
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  MS4A14 MUTATED                                        5              3
  MS4A14 WILD-TYPE                                     38             25
                  vv
clus               LIFELONG NON-SMOKER
  MS4A14 MUTATED                     0
  MS4A14 WILD-TYPE                   8
D87V12, multiclass
                                             clus
vv                                            MS4A14 MUTATED MS4A14 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              4               90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   5               38
  CURRENT SMOKER                                           3               25
  LIFELONG NON-SMOKER                                      0                8
D87V13, continuous
                  vv
clus                R0  R1  R2  RX
  MS4A14 MUTATED    11   0   0   0
  MS4A14 WILD-TYPE 136   2   4  10
D87V14, multiclass
    clus
vv   MS4A14 MUTATED MS4A14 WILD-TYPE
  R0             11              136
  R1              0                2
  R2              0                4
  RX              0               10

Clustering(88) Variable = TMEM195 MUTATION ANALYSIS
D88V1, survival
                   sevent
clus2                0  1
  TMEM195 MUTATED    5  3
  TMEM195 WILD-TYPE 92 67
  TMEM195 MUTATED TMEM195 WILD-TYPE 
                8               159 
  TMEM195 MUTATED TMEM195 WILD-TYPE 
                3                67 
$`TMEM195 MUTATED`
TCGA-18-3421 TCGA-22-5491 TCGA-33-4566 TCGA-37-5819 TCGA-39-5039 TCGA-66-2744 
       43.76        56.32       173.79         3.39        17.88         0.99 
TCGA-66-2800 TCGA-85-6561 
       49.05         0.79 

$`TMEM195 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       30.08        62.86        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
       43.10       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5016 
        3.95         0.43         7.82         6.81         0.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
       43.10        21.07         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-85-6560 
       54.08         4.01         0.36 

  TMEM195 MUTATED TMEM195 WILD-TYPE 
             0.79              0.10 
  TMEM195 MUTATED TMEM195 WILD-TYPE 
           173.79            141.34 
  TMEM195 MUTATED TMEM195 WILD-TYPE 
            30.82             16.96 
[1] "0.8 - 173.8 (30.8)" "0.1 - 141.3 (17.0)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" 
[1] "hr=" "2.2"
D88V2, continuous
D88V3, binary
                   cls
clus                  0   1
  TMEM195 MUTATED     0   8
  TMEM195 WILD-TYPE  47 123
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TMEM195 MUTATED      0    8
  TMEM195 WILD-TYPE   47  123
        clus
vv       TMEM195 MUTATED TMEM195 WILD-TYPE
  FEMALE               0                47
  MALE                 8               123
D88V4, continuous
[1] "Remove cluster labels:" "TMEM195 MUTATED"       
clus
  TMEM195 MUTATED TMEM195 WILD-TYPE 
                2                34 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3410        TCGA-18-3414 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-18-3419        TCGA-21-5782        TCGA-21-5787        TCGA-22-4591 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-4593        TCGA-22-4595        TCGA-22-4599        TCGA-22-4601 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4613        TCGA-22-5472        TCGA-22-5473 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5492 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-34-5234        TCGA-37-4133        TCGA-37-4135        TCGA-60-2698 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2715        TCGA-60-2725        TCGA-60-2726 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-70-6722        TCGA-70-6723 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  TMEM195 MUTATED                                       0
  TMEM195 WILD-TYPE                                     5
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  TMEM195 MUTATED                                        0
  TMEM195 WILD-TYPE                                      1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TMEM195 MUTATED                                                             8
  TMEM195 WILD-TYPE                                                         164
D88V5, multiclass
                                                             clus
vv                                                            TMEM195 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               8
                                                             clus
vv                                                            TMEM195 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               164
                   vv
clus                 T1  T2  T3  T4
  TMEM195 MUTATED     1   6   0   1
  TMEM195 WILD-TYPE  35 110  14  11
D88V6, multiclass
    clus
vv   TMEM195 MUTATED TMEM195 WILD-TYPE
  T1               1                35
  T2               6               110
  T3               0                14
  T4               1                11
                   vv
clus                 N0  N1  N2  N3
  TMEM195 MUTATED     6   1   1   0
  TMEM195 WILD-TYPE 111  38  16   5
D88V7, multiclass
    clus
vv   TMEM195 MUTATED TMEM195 WILD-TYPE
  N0               6               111
  N1               1                38
  N2               1                16
  N3               0                 5
                   vv
clus                 M0  M1  MX
  TMEM195 MUTATED     8   0   0
  TMEM195 WILD-TYPE 157   3   6
D88V8, multiclass
    clus
vv   TMEM195 MUTATED TMEM195 WILD-TYPE
  M0               8               157
  M1               0                 3
  MX               0                 6
                   vv
clus                 I II III+IV
  TMEM195 MUTATED    3  3      2
  TMEM195 WILD-TYPE 94 35     39
D88V9, multiclass
        clus
vv       TMEM195 MUTATED TMEM195 WILD-TYPE
  I                    3                94
  II                   3                35
  III+IV               2                39
D88V10, binary
                   cls
clus                  0   1
  TMEM195 MUTATED     0   8
  TMEM195 WILD-TYPE   4 166
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TMEM195 MUTATED      0    8
  TMEM195 WILD-TYPE    4  166
     clus
vv    TMEM195 MUTATED TMEM195 WILD-TYPE
  NO                0                 4
  YES               8               166
D88V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  TMEM195 MUTATED                                             4
  TMEM195 WILD-TYPE                                          90
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  TMEM195 MUTATED                                        2              2
  TMEM195 WILD-TYPE                                     41             26
                   vv
clus                LIFELONG NON-SMOKER
  TMEM195 MUTATED                     0
  TMEM195 WILD-TYPE                   8
D88V12, multiclass
                                             clus
vv                                            TMEM195 MUTATED TMEM195 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               4                90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                41
  CURRENT SMOKER                                            2                26
  LIFELONG NON-SMOKER                                       0                 8
D88V13, continuous
                   vv
clus                 R0  R1  R2  RX
  TMEM195 MUTATED     8   0   0   0
  TMEM195 WILD-TYPE 139   2   4  10
D88V14, multiclass
    clus
vv   TMEM195 MUTATED TMEM195 WILD-TYPE
  R0               8               139
  R1               0                 2
  R2               0                 4
  RX               0                10

Clustering(89) Variable = TMEM90A MUTATION ANALYSIS
D89V1, survival
                   sevent
clus2                0  1
  TMEM90A MUTATED    3  1
  TMEM90A WILD-TYPE 94 69
  TMEM90A MUTATED TMEM90A WILD-TYPE 
                4               163 
  TMEM90A MUTATED TMEM90A WILD-TYPE 
                1                69 
$`TMEM90A MUTATED`
TCGA-18-3419 TCGA-18-4083 TCGA-37-3783 TCGA-51-4081 
        1.61         6.15         3.95         2.07 

$`TMEM90A WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 
       11.34        13.02        59.51        28.34        24.92        43.76 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        4.96         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.59         0.39         0.39        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
        1.94        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 
TCGA-85-6561 
        0.79 

  TMEM90A MUTATED TMEM90A WILD-TYPE 
             1.61              0.10 
  TMEM90A MUTATED TMEM90A WILD-TYPE 
             6.15            173.79 
  TMEM90A MUTATED TMEM90A WILD-TYPE 
             3.01             18.84 
[1] "1.6 - 6.2 (3.0)"    "0.1 - 173.8 (18.8)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE"   "TMEM90A MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"TMEM90A WILD-TYPE"   "TMEM90A MUTATED" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE"   "TMEM90A MUTATED" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
  "TMEM90A MUTATED" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE"   "TMEM90A MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"TMEM90A WILD-TYPE"   "TMEM90A MUTATED" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE"   "TMEM90A MUTATED" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
  "TMEM90A MUTATED" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE"   "TMEM90A MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"TMEM90A WILD-TYPE"   "TMEM90A MUTATED" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE"   "TMEM90A MUTATED" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
  "TMEM90A MUTATED" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
[1] "hr=" "4.3"
D89V2, continuous
D89V3, binary
                   cls
clus                  0   1
  TMEM90A MUTATED     0   4
  TMEM90A WILD-TYPE  47 127
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TMEM90A MUTATED      0    4
  TMEM90A WILD-TYPE   47  127
        clus
vv       TMEM90A MUTATED TMEM90A WILD-TYPE
  FEMALE               0                47
  MALE                 4               127
D89V4, continuous
[1] "Remove cluster labels:" "TMEM90A MUTATED"       
clus
  TMEM90A MUTATED TMEM90A WILD-TYPE 
                1                35 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3410        TCGA-18-3414 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5787        TCGA-22-4591        TCGA-22-4593 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5480        TCGA-22-5482 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-34-5234        TCGA-37-4133        TCGA-37-4135        TCGA-37-5819 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2712        TCGA-60-2715        TCGA-60-2725 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-60-2726        TCGA-70-6722        TCGA-70-6723 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  TMEM90A MUTATED                                       0
  TMEM90A WILD-TYPE                                     5
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  TMEM90A MUTATED                                        0
  TMEM90A WILD-TYPE                                      1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TMEM90A MUTATED                                                             4
  TMEM90A WILD-TYPE                                                         168
D89V5, multiclass
                                                             clus
vv                                                            TMEM90A MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               4
                                                             clus
vv                                                            TMEM90A WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               168
                   vv
clus                 T1  T2  T3  T4
  TMEM90A MUTATED     0   3   1   0
  TMEM90A WILD-TYPE  36 113  13  12
D89V6, multiclass
    clus
vv   TMEM90A MUTATED TMEM90A WILD-TYPE
  T1               0                36
  T2               3               113
  T3               1                13
  T4               0                12
                   vv
clus                 N0  N1  N2  N3
  TMEM90A MUTATED     0   3   1   0
  TMEM90A WILD-TYPE 117  36  16   5
D89V7, multiclass
    clus
vv   TMEM90A MUTATED TMEM90A WILD-TYPE
  N0               0               117
  N1               3                36
  N2               1                16
  N3               0                 5
                   vv
clus                 M0  M1  MX
  TMEM90A MUTATED     4   0   0
  TMEM90A WILD-TYPE 161   3   6
D89V8, multiclass
    clus
vv   TMEM90A MUTATED TMEM90A WILD-TYPE
  M0               4               161
  M1               0                 3
  MX               0                 6
                   vv
clus                 I II III+IV
  TMEM90A MUTATED    0  3      1
  TMEM90A WILD-TYPE 97 35     40
D89V9, multiclass
        clus
vv       TMEM90A MUTATED TMEM90A WILD-TYPE
  I                    0                97
  II                   3                35
  III+IV               1                40
D89V10, binary
                   cls
clus                  0   1
  TMEM90A MUTATED     0   4
  TMEM90A WILD-TYPE   4 170
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TMEM90A MUTATED      0    4
  TMEM90A WILD-TYPE    4  170
     clus
vv    TMEM90A MUTATED TMEM90A WILD-TYPE
  NO                0                 4
  YES               4               170
D89V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  TMEM90A MUTATED                                             1
  TMEM90A WILD-TYPE                                          93
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  TMEM90A MUTATED                                        0              2
  TMEM90A WILD-TYPE                                     43             26
                   vv
clus                LIFELONG NON-SMOKER
  TMEM90A MUTATED                     0
  TMEM90A WILD-TYPE                   8
D89V12, multiclass
                                             clus
vv                                            TMEM90A MUTATED TMEM90A WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               1                93
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    0                43
  CURRENT SMOKER                                            2                26
  LIFELONG NON-SMOKER                                       0                 8
D89V13, continuous
                   vv
clus                 R0  R1  R2  RX
  TMEM90A MUTATED     4   0   0   0
  TMEM90A WILD-TYPE 143   2   4  10
D89V14, multiclass
    clus
vv   TMEM90A MUTATED TMEM90A WILD-TYPE
  R0               4               143
  R1               0                 2
  R2               0                 4
  RX               0                10

Clustering(90) Variable = ZFP42 MUTATION ANALYSIS
D90V1, survival
                 sevent
clus2              0  1
  ZFP42 MUTATED    6  1
  ZFP42 WILD-TYPE 91 69
  ZFP42 MUTATED ZFP42 WILD-TYPE 
              7             160 
  ZFP42 MUTATED ZFP42 WILD-TYPE 
              1              69 
$`ZFP42 MUTATED`
TCGA-18-5592 TCGA-22-5471 TCGA-34-2608 TCGA-37-4141 TCGA-60-2708 TCGA-66-2734 
        3.02        31.69        32.84         0.39        68.45        43.10 
TCGA-66-2759 
       25.02 

$`ZFP42 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 
       43.76         6.15         2.79        90.51        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5472 TCGA-22-5473 
       34.75        13.12        19.30        11.77        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
        2.63        61.61        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 TCGA-39-5016 
        3.95         0.43         7.82         6.81         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
        1.02        10.22        21.70        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
       21.07         0.99         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       20.98         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  ZFP42 MUTATED ZFP42 WILD-TYPE 
           0.39            0.10 
  ZFP42 MUTATED ZFP42 WILD-TYPE 
          68.45          173.79 
  ZFP42 MUTATED ZFP42 WILD-TYPE 
          31.69           16.78 
[1] "0.4 - 68.5 (31.7)"  "0.1 - 173.8 (16.8)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "ZFP42 MUTATED" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ZFP42 WILD-TYPE"   "ZFP42 MUTATED" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
  "ZFP42 MUTATED" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE"   "ZFP42 MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE"   "ZFP42 MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE"   "ZFP42 MUTATED" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE"   "ZFP42 MUTATED" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "ZFP42 MUTATED" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ZFP42 WILD-TYPE"   "ZFP42 MUTATED" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
  "ZFP42 MUTATED" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE"   "ZFP42 MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE"   "ZFP42 MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE"   "ZFP42 MUTATED" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE"   "ZFP42 MUTATED" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "ZFP42 MUTATED" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ZFP42 WILD-TYPE"   "ZFP42 MUTATED" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
  "ZFP42 MUTATED" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE"   "ZFP42 MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE"   "ZFP42 MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE"   "ZFP42 MUTATED" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE"   "ZFP42 MUTATED" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
[1] "hr=" "3.5"
D90V2, continuous
D90V3, binary
                 cls
clus                0   1
  ZFP42 MUTATED     3   5
  ZFP42 WILD-TYPE  44 126
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZFP42 MUTATED      3    5
  ZFP42 WILD-TYPE   44  126
        clus
vv       ZFP42 MUTATED ZFP42 WILD-TYPE
  FEMALE             3              44
  MALE               5             126
D90V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  ZFP42 MUTATED                                       0
  ZFP42 WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  ZFP42 MUTATED                                        0
  ZFP42 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ZFP42 MUTATED                                                             8
  ZFP42 WILD-TYPE                                                         164
D90V5, multiclass
                                                             clus
vv                                                            ZFP42 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             8
                                                             clus
vv                                                            ZFP42 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             164
                 vv
clus               T1  T2  T3  T4
  ZFP42 MUTATED     1   5   1   1
  ZFP42 WILD-TYPE  35 111  13  11
D90V6, multiclass
    clus
vv   ZFP42 MUTATED ZFP42 WILD-TYPE
  T1             1              35
  T2             5             111
  T3             1              13
  T4             1              11
                 vv
clus               N0  N1  N2  N3
  ZFP42 MUTATED     6   1   1   0
  ZFP42 WILD-TYPE 111  38  16   5
D90V7, multiclass
    clus
vv   ZFP42 MUTATED ZFP42 WILD-TYPE
  N0             6             111
  N1             1              38
  N2             1              16
  N3             0               5
                 vv
clus               M0  M1  MX
  ZFP42 MUTATED     8   0   0
  ZFP42 WILD-TYPE 157   3   6
D90V8, multiclass
    clus
vv   ZFP42 MUTATED ZFP42 WILD-TYPE
  M0             8             157
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  ZFP42 MUTATED    4  3      1
  ZFP42 WILD-TYPE 93 35     40
D90V9, multiclass
        clus
vv       ZFP42 MUTATED ZFP42 WILD-TYPE
  I                  4              93
  II                 3              35
  III+IV             1              40
D90V10, binary
                 cls
clus                0   1
  ZFP42 MUTATED     1   7
  ZFP42 WILD-TYPE   3 167
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZFP42 MUTATED      1    7
  ZFP42 WILD-TYPE    3  167
     clus
vv    ZFP42 MUTATED ZFP42 WILD-TYPE
  NO              1               3
  YES             7             167
D90V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  ZFP42 MUTATED                                             4
  ZFP42 WILD-TYPE                                          90
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  ZFP42 MUTATED                                        3              0
  ZFP42 WILD-TYPE                                     40             28
                 vv
clus              LIFELONG NON-SMOKER
  ZFP42 MUTATED                     1
  ZFP42 WILD-TYPE                   7
D90V12, multiclass
                                             clus
vv                                            ZFP42 MUTATED ZFP42 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              40
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     1               7
D90V13, continuous
                 vv
clus               R0  R1  R2  RX
  ZFP42 MUTATED     6   1   1   0
  ZFP42 WILD-TYPE 141   1   3  10
D90V14, multiclass
    clus
vv   ZFP42 MUTATED ZFP42 WILD-TYPE
  R0             6             141
  R1             1               1
  R2             1               3
  RX             0              10

Clustering(91) Variable = LEPROT MUTATION ANALYSIS
D91V1, survival
                  sevent
clus2               0  1
  LEPROT MUTATED    1  3
  LEPROT WILD-TYPE 96 67
  LEPROT MUTATED LEPROT WILD-TYPE 
               4              163 
  LEPROT MUTATED LEPROT WILD-TYPE 
               3               67 
$`LEPROT MUTATED`
TCGA-22-1002 TCGA-22-4595 TCGA-66-2727 TCGA-66-2744 
        4.31        24.13        16.96         0.99 

$`LEPROT WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1011 
       31.63        29.85        21.57        10.82         7.33         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4599 TCGA-22-4601 
       14.10        27.02        20.45        35.08        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
        8.48         7.00         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 
        0.95         0.59         0.39         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 
        0.10         2.04         1.02        10.22        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       30.61         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 TCGA-66-2742 TCGA-66-2754 TCGA-66-2755 
       23.64        11.77        43.10        21.07         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
        1.94        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 
TCGA-85-6561 
        0.79 

  LEPROT MUTATED LEPROT WILD-TYPE 
            0.99             0.10 
  LEPROT MUTATED LEPROT WILD-TYPE 
           24.13           173.79 
  LEPROT MUTATED LEPROT WILD-TYPE 
          10.635           18.080 
[1] "1.0 - 24.1 (10.6)"  "0.1 - 173.8 (18.1)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"LEPROT WILD-TYPE"   "LEPROT MUTATED" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE"   "LEPROT MUTATED" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE"   "LEPROT MUTATED" "LEPROT WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"LEPROT WILD-TYPE"   "LEPROT MUTATED" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"LEPROT WILD-TYPE"   "LEPROT MUTATED" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE"   "LEPROT MUTATED" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE"   "LEPROT MUTATED" "LEPROT WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"LEPROT WILD-TYPE"   "LEPROT MUTATED" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"LEPROT WILD-TYPE"   "LEPROT MUTATED" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE"   "LEPROT MUTATED" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE"   "LEPROT MUTATED" "LEPROT WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"LEPROT WILD-TYPE"   "LEPROT MUTATED" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
[1] "hr=" "3.6"
D91V2, continuous
D91V3, binary
                  cls
clus                 0   1
  LEPROT MUTATED     1   3
  LEPROT WILD-TYPE  46 128
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LEPROT MUTATED      1    3
  LEPROT WILD-TYPE   46  128
        clus
vv       LEPROT MUTATED LEPROT WILD-TYPE
  FEMALE              1               46
  MALE                3              128
D91V4, continuous
[1] "Remove cluster labels:" "LEPROT MUTATED"        
clus
  LEPROT MUTATED LEPROT WILD-TYPE 
               1               35 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4599       TCGA-22-4601       TCGA-22-4604 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5472       TCGA-22-5473       TCGA-22-5474 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5482 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-34-5234       TCGA-37-4133       TCGA-37-4135       TCGA-37-5819 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2698       TCGA-60-2712       TCGA-60-2715       TCGA-60-2725 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2726       TCGA-70-6722       TCGA-70-6723 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  LEPROT MUTATED                                       0
  LEPROT WILD-TYPE                                     5
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  LEPROT MUTATED                                        0
  LEPROT WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  LEPROT MUTATED                                                             4
  LEPROT WILD-TYPE                                                         168
D91V5, multiclass
                                                             clus
vv                                                            LEPROT MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              4
                                                             clus
vv                                                            LEPROT WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              168
                  vv
clus                T1  T2  T3  T4
  LEPROT MUTATED     1   2   1   0
  LEPROT WILD-TYPE  35 114  13  12
D91V6, multiclass
    clus
vv   LEPROT MUTATED LEPROT WILD-TYPE
  T1              1               35
  T2              2              114
  T3              1               13
  T4              0               12
                  vv
clus                N0  N1  N2  N3
  LEPROT MUTATED     2   1   1   0
  LEPROT WILD-TYPE 115  38  16   5
D91V7, multiclass
    clus
vv   LEPROT MUTATED LEPROT WILD-TYPE
  N0              2              115
  N1              1               38
  N2              1               16
  N3              0                5
                  vv
clus                M0  M1  MX
  LEPROT MUTATED     3   0   0
  LEPROT WILD-TYPE 162   3   6
D91V8, multiclass
    clus
vv   LEPROT MUTATED LEPROT WILD-TYPE
  M0              3              162
  M1              0                3
  MX              0                6
                  vv
clus                I II III+IV
  LEPROT MUTATED    2  1      1
  LEPROT WILD-TYPE 95 37     40
D91V9, multiclass
        clus
vv       LEPROT MUTATED LEPROT WILD-TYPE
  I                   2               95
  II                  1               37
  III+IV              1               40
D91V10, binary
                  cls
clus                 0   1
  LEPROT MUTATED     1   3
  LEPROT WILD-TYPE   3 171
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LEPROT MUTATED      1    3
  LEPROT WILD-TYPE    3  171
     clus
vv    LEPROT MUTATED LEPROT WILD-TYPE
  NO               1                3
  YES              3              171
D91V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  LEPROT MUTATED                                             3
  LEPROT WILD-TYPE                                          91
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  LEPROT MUTATED                                        0              1
  LEPROT WILD-TYPE                                     43             27
                  vv
clus               LIFELONG NON-SMOKER
  LEPROT MUTATED                     0
  LEPROT WILD-TYPE                   8
D91V12, multiclass
                                             clus
vv                                            LEPROT MUTATED LEPROT WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              3               91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   0               43
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0                8
D91V13, continuous
                  vv
clus                R0  R1  R2  RX
  LEPROT MUTATED     4   0   0   0
  LEPROT WILD-TYPE 143   2   4  10
D91V14, multiclass
    clus
vv   LEPROT MUTATED LEPROT WILD-TYPE
  R0              4              143
  R1              0                2
  R2              0                4
  RX              0               10

Clustering(92) Variable = LRRTM3 MUTATION ANALYSIS
D92V1, survival
                  sevent
clus2               0  1
  LRRTM3 MUTATED    4  3
  LRRTM3 WILD-TYPE 93 67
  LRRTM3 MUTATED LRRTM3 WILD-TYPE 
               7              160 
  LRRTM3 MUTATED LRRTM3 WILD-TYPE 
               3               67 
$`LRRTM3 MUTATED`
TCGA-22-5471 TCGA-22-5473 TCGA-33-4538 TCGA-34-5232 TCGA-51-4080 TCGA-66-2767 
       31.69        63.52        97.94        51.78         0.39         2.01 
TCGA-66-2777 
        2.01 

$`LRRTM3 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5472 
       38.17        34.75        13.12        19.30        11.77        64.90 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4547 
       62.86        56.32        16.60        82.98       114.05        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       61.61        32.84        50.24        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 
        2.01        23.01        19.00         3.02        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  LRRTM3 MUTATED LRRTM3 WILD-TYPE 
            0.39             0.10 
  LRRTM3 MUTATED LRRTM3 WILD-TYPE 
           97.94           173.79 
  LRRTM3 MUTATED LRRTM3 WILD-TYPE 
           31.69            17.42 
[1] "0.4 - 97.9 (31.7)"  "0.1 - 173.8 (17.4)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" "LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" "LRRTM3 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
  "LRRTM3 MUTATED" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" "LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" "LRRTM3 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
  "LRRTM3 MUTATED" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" "LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" "LRRTM3 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
  "LRRTM3 MUTATED" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
[1] "hr=" "1.3"
D92V2, continuous
D92V3, binary
                  cls
clus                 0   1
  LRRTM3 MUTATED     1   7
  LRRTM3 WILD-TYPE  46 124
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRTM3 MUTATED      1    7
  LRRTM3 WILD-TYPE   46  124
        clus
vv       LRRTM3 MUTATED LRRTM3 WILD-TYPE
  FEMALE              1               46
  MALE                7              124
D92V4, continuous
[1] "Remove cluster labels:" "LRRTM3 MUTATED"        
clus
  LRRTM3 MUTATED LRRTM3 WILD-TYPE 
               1               35 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4595       TCGA-22-4599       TCGA-22-4601 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-4604       TCGA-22-4613       TCGA-22-5472       TCGA-22-5474 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5482 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-34-5234       TCGA-37-4133       TCGA-37-4135       TCGA-37-5819 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-60-2698       TCGA-60-2712       TCGA-60-2715       TCGA-60-2725 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-60-2726       TCGA-70-6722       TCGA-70-6723 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  LRRTM3 MUTATED                                       1
  LRRTM3 WILD-TYPE                                     4
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  LRRTM3 MUTATED                                        0
  LRRTM3 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  LRRTM3 MUTATED                                                             7
  LRRTM3 WILD-TYPE                                                         165
D92V5, multiclass
                                                             clus
vv                                                            LRRTM3 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              7
                                                             clus
vv                                                            LRRTM3 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              165
                  vv
clus                T1  T2  T3  T4
  LRRTM3 MUTATED     1   5   1   1
  LRRTM3 WILD-TYPE  35 111  13  11
D92V6, multiclass
    clus
vv   LRRTM3 MUTATED LRRTM3 WILD-TYPE
  T1              1               35
  T2              5              111
  T3              1               13
  T4              1               11
                  vv
clus                N0  N1  N2  N3
  LRRTM3 MUTATED     3   3   1   1
  LRRTM3 WILD-TYPE 114  36  16   4
D92V7, multiclass
    clus
vv   LRRTM3 MUTATED LRRTM3 WILD-TYPE
  N0              3              114
  N1              3               36
  N2              1               16
  N3              1                4
                  vv
clus                M0  M1  MX
  LRRTM3 MUTATED     7   0   0
  LRRTM3 WILD-TYPE 158   3   6
D92V8, multiclass
    clus
vv   LRRTM3 MUTATED LRRTM3 WILD-TYPE
  M0              7              158
  M1              0                3
  MX              0                6
                  vv
clus                I II III+IV
  LRRTM3 MUTATED    3  2      3
  LRRTM3 WILD-TYPE 94 36     38
D92V9, multiclass
        clus
vv       LRRTM3 MUTATED LRRTM3 WILD-TYPE
  I                   3               94
  II                  2               36
  III+IV              3               38
D92V10, binary
                  cls
clus                 0   1
  LRRTM3 MUTATED     1   7
  LRRTM3 WILD-TYPE   3 167
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRTM3 MUTATED      1    7
  LRRTM3 WILD-TYPE    3  167
     clus
vv    LRRTM3 MUTATED LRRTM3 WILD-TYPE
  NO               1                3
  YES              7              167
D92V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  LRRTM3 MUTATED                                             5
  LRRTM3 WILD-TYPE                                          89
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  LRRTM3 MUTATED                                        1              1
  LRRTM3 WILD-TYPE                                     42             27
                  vv
clus               LIFELONG NON-SMOKER
  LRRTM3 MUTATED                     0
  LRRTM3 WILD-TYPE                   8
D92V12, multiclass
                                             clus
vv                                            LRRTM3 MUTATED LRRTM3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              5               89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               42
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0                8
D92V13, continuous
                  vv
clus                R0  R1  R2  RX
  LRRTM3 MUTATED     5   0   1   1
  LRRTM3 WILD-TYPE 142   2   3   9
D92V14, multiclass
    clus
vv   LRRTM3 MUTATED LRRTM3 WILD-TYPE
  R0              5              142
  R1              0                2
  R2              1                3
  RX              1                9

Clustering(93) Variable = OR4N4 MUTATION ANALYSIS
D93V1, survival
                 sevent
clus2              0  1
  OR4N4 MUTATED    3  4
  OR4N4 WILD-TYPE 94 66
  OR4N4 MUTATED OR4N4 WILD-TYPE 
              7             160 
  OR4N4 MUTATED OR4N4 WILD-TYPE 
              4              66 
$`OR4N4 MUTATED`
TCGA-18-3421 TCGA-21-1071 TCGA-22-4613 TCGA-51-4079 TCGA-66-2767 TCGA-66-2771 
       43.76        46.88        11.77         0.39         2.01        19.00 
TCGA-66-2791 
        5.03 

$`OR4N4 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       13.12        19.30        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.59         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2768 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        1.02         2.01        23.01         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       40.01        22.98         4.04        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  OR4N4 MUTATED OR4N4 WILD-TYPE 
           0.39            0.10 
  OR4N4 MUTATED OR4N4 WILD-TYPE 
          46.88          173.79 
  OR4N4 MUTATED OR4N4 WILD-TYPE 
          11.77           17.98 
[1] "0.4 - 46.9 (11.8)"  "0.1 - 173.8 (18.0)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
  "OR4N4 MUTATED" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE"   "OR4N4 MUTATED" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "OR4N4 MUTATED" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE"   "OR4N4 MUTATED" "OR4N4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE"   "OR4N4 MUTATED" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE"   "OR4N4 MUTATED" "OR4N4 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE"   "OR4N4 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
  "OR4N4 MUTATED" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE"   "OR4N4 MUTATED" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "OR4N4 MUTATED" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE"   "OR4N4 MUTATED" "OR4N4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE"   "OR4N4 MUTATED" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE"   "OR4N4 MUTATED" "OR4N4 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE"   "OR4N4 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
  "OR4N4 MUTATED" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE"   "OR4N4 MUTATED" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "OR4N4 MUTATED" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE"   "OR4N4 MUTATED" "OR4N4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE"   "OR4N4 MUTATED" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE"   "OR4N4 MUTATED" "OR4N4 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE"   "OR4N4 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
[1] "hr=" "1.9"
D93V2, continuous
D93V3, binary
                 cls
clus                0   1
  OR4N4 MUTATED     2   7
  OR4N4 WILD-TYPE  45 124
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4N4 MUTATED      2    7
  OR4N4 WILD-TYPE   45  124
        clus
vv       OR4N4 MUTATED OR4N4 WILD-TYPE
  FEMALE             2              45
  MALE               7             124
D93V4, continuous
[1] "Remove cluster labels:" "OR4N4 MUTATED"         
clus
  OR4N4 MUTATED OR4N4 WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-4604      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR4N4 MUTATED                                       0
  OR4N4 WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR4N4 MUTATED                                        1
  OR4N4 WILD-TYPE                                      0
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR4N4 MUTATED                                                             8
  OR4N4 WILD-TYPE                                                         164
D93V5, multiclass
                                                             clus
vv                                                            OR4N4 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             8
                                                             clus
vv                                                            OR4N4 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             164
                 vv
clus               T1  T2  T3  T4
  OR4N4 MUTATED     2   6   1   0
  OR4N4 WILD-TYPE  34 110  13  12
D93V6, multiclass
    clus
vv   OR4N4 MUTATED OR4N4 WILD-TYPE
  T1             2              34
  T2             6             110
  T3             1              13
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  OR4N4 MUTATED     6   1   0   2
  OR4N4 WILD-TYPE 111  38  17   3
D93V7, multiclass
    clus
vv   OR4N4 MUTATED OR4N4 WILD-TYPE
  N0             6             111
  N1             1              38
  N2             0              17
  N3             2               3
                 vv
clus               M0  M1  MX
  OR4N4 MUTATED     8   0   0
  OR4N4 WILD-TYPE 157   3   6
D93V8, multiclass
    clus
vv   OR4N4 MUTATED OR4N4 WILD-TYPE
  M0             8             157
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  OR4N4 MUTATED    5  2      2
  OR4N4 WILD-TYPE 92 36     39
D93V9, multiclass
        clus
vv       OR4N4 MUTATED OR4N4 WILD-TYPE
  I                  5              92
  II                 2              36
  III+IV             2              39
D93V10, binary
                 cls
clus                0   1
  OR4N4 MUTATED     0   9
  OR4N4 WILD-TYPE   4 165
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4N4 MUTATED      0    9
  OR4N4 WILD-TYPE    4  165
     clus
vv    OR4N4 MUTATED OR4N4 WILD-TYPE
  NO              0               4
  YES             9             165
D93V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR4N4 MUTATED                                             5
  OR4N4 WILD-TYPE                                          89
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR4N4 MUTATED                                        2              1
  OR4N4 WILD-TYPE                                     41             27
                 vv
clus              LIFELONG NON-SMOKER
  OR4N4 MUTATED                     1
  OR4N4 WILD-TYPE                   7
D93V12, multiclass
                                             clus
vv                                            OR4N4 MUTATED OR4N4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     1               7
D93V13, continuous
                 vv
clus               R0  R1  R2  RX
  OR4N4 MUTATED     7   1   0   1
  OR4N4 WILD-TYPE 140   1   4   9
D93V14, multiclass
    clus
vv   OR4N4 MUTATED OR4N4 WILD-TYPE
  R0             7             140
  R1             1               1
  R2             0               4
  RX             1               9

Clustering(94) Variable = SNAI1 MUTATION ANALYSIS
D94V1, survival
                 sevent
clus2              0  1
  SNAI1 MUTATED    2  1
  SNAI1 WILD-TYPE 95 69
  SNAI1 MUTATED SNAI1 WILD-TYPE 
              3             164 
  SNAI1 MUTATED SNAI1 WILD-TYPE 
              1              69 
$`SNAI1 MUTATED`
TCGA-18-3412 TCGA-18-3419 TCGA-37-4141 
       11.34         1.61         0.39 

$`SNAI1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        28.34        24.92        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 
        4.96         3.95         0.43         7.82         6.81         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  SNAI1 MUTATED SNAI1 WILD-TYPE 
           0.39            0.10 
  SNAI1 MUTATED SNAI1 WILD-TYPE 
          11.34          173.79 
  SNAI1 MUTATED SNAI1 WILD-TYPE 
           1.61           18.46 
[1] "0.4 - 11.3 (1.6)"   "0.1 - 173.8 (18.5)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE"   "SNAI1 MUTATED" "SNAI1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE"   "SNAI1 MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE"   "SNAI1 MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE"   "SNAI1 MUTATED" "SNAI1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE"   "SNAI1 MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE"   "SNAI1 MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE"   "SNAI1 MUTATED" "SNAI1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE"   "SNAI1 MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE"   "SNAI1 MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
[1] "hr=" "4.3"
D94V2, continuous
D94V3, binary
                 cls
clus                0   1
  SNAI1 MUTATED     1   3
  SNAI1 WILD-TYPE  46 128
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SNAI1 MUTATED      1    3
  SNAI1 WILD-TYPE   46  128
        clus
vv       SNAI1 MUTATED SNAI1 WILD-TYPE
  FEMALE             1              46
  MALE               3             128
D94V4, continuous
[1] "Remove cluster labels:" "SNAI1 MUTATED"         
clus
  SNAI1 MUTATED SNAI1 WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5787      TCGA-22-4591      TCGA-22-4593 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-4595      TCGA-22-4599      TCGA-22-4601      TCGA-22-4604 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  SNAI1 MUTATED                                       0
  SNAI1 WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  SNAI1 MUTATED                                        0
  SNAI1 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SNAI1 MUTATED                                                             4
  SNAI1 WILD-TYPE                                                         168
D94V5, multiclass
                                                             clus
vv                                                            SNAI1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             4
                                                             clus
vv                                                            SNAI1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             168
                 vv
clus               T1  T2  T3  T4
  SNAI1 MUTATED     2   2   0   0
  SNAI1 WILD-TYPE  34 114  14  12
D94V6, multiclass
    clus
vv   SNAI1 MUTATED SNAI1 WILD-TYPE
  T1             2              34
  T2             2             114
  T3             0              14
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  SNAI1 MUTATED     3   1   0   0
  SNAI1 WILD-TYPE 114  38  17   5
D94V7, multiclass
    clus
vv   SNAI1 MUTATED SNAI1 WILD-TYPE
  N0             3             114
  N1             1              38
  N2             0              17
  N3             0               5
                 vv
clus               M0  M1  MX
  SNAI1 MUTATED     4   0   0
  SNAI1 WILD-TYPE 161   3   6
D94V8, multiclass
    clus
vv   SNAI1 MUTATED SNAI1 WILD-TYPE
  M0             4             161
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  SNAI1 MUTATED    3  1      0
  SNAI1 WILD-TYPE 94 37     41
D94V9, multiclass
        clus
vv       SNAI1 MUTATED SNAI1 WILD-TYPE
  I                  3              94
  II                 1              37
  III+IV             0              41
D94V10, binary
                 cls
clus                0   1
  SNAI1 MUTATED     0   4
  SNAI1 WILD-TYPE   4 170
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SNAI1 MUTATED      0    4
  SNAI1 WILD-TYPE    4  170
     clus
vv    SNAI1 MUTATED SNAI1 WILD-TYPE
  NO              0               4
  YES             4             170
D94V11, continuous
[1] "Remove cluster labels:" "SNAI1 MUTATED"         
clus
  SNAI1 MUTATED SNAI1 WILD-TYPE 
              2             144 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-18-3411      TCGA-18-3414      TCGA-18-3415      TCGA-18-3416 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-18-3417      TCGA-18-3421      TCGA-18-4083      TCGA-18-4086 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-18-5592      TCGA-21-1070      TCGA-21-1071      TCGA-21-1076 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-21-1077      TCGA-21-1078      TCGA-21-1081      TCGA-21-5782 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-21-5784      TCGA-21-5786      TCGA-21-5787      TCGA-22-0944 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-1002      TCGA-22-1011      TCGA-22-1012      TCGA-22-1016 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-4604      TCGA-22-4607      TCGA-22-4613      TCGA-22-5471 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-5472      TCGA-22-5473      TCGA-22-5474      TCGA-22-5477 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-5480      TCGA-22-5482      TCGA-22-5485      TCGA-22-5489 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-5491      TCGA-22-5492      TCGA-33-4532      TCGA-33-4533 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-33-4538      TCGA-33-4547      TCGA-33-4566      TCGA-33-4582 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-33-4583      TCGA-33-4586      TCGA-33-6737      TCGA-34-2596 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-34-2600      TCGA-34-2608      TCGA-34-5231      TCGA-34-5240 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-34-5241      TCGA-34-5928      TCGA-34-5929      TCGA-37-4133 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-37-4135      TCGA-37-5819      TCGA-39-5016      TCGA-39-5019 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-39-5021      TCGA-39-5022      TCGA-39-5024      TCGA-39-5027 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-39-5028      TCGA-39-5029      TCGA-39-5030      TCGA-39-5031 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-39-5035      TCGA-39-5036      TCGA-39-5037      TCGA-39-5039 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-43-2578      TCGA-43-3394      TCGA-43-3920      TCGA-43-5668 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-43-6143      TCGA-43-6647      TCGA-43-6770      TCGA-43-6771 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-51-4079      TCGA-51-4081      TCGA-56-1622      TCGA-60-2707 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2708      TCGA-60-2709      TCGA-60-2710      TCGA-60-2711 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2713      TCGA-60-2715      TCGA-60-2719 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2720      TCGA-60-2721      TCGA-60-2722      TCGA-60-2723 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2724      TCGA-60-2725      TCGA-60-2726      TCGA-63-5131 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-63-6202      TCGA-66-2727      TCGA-66-2734      TCGA-66-2742 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2744      TCGA-66-2754      TCGA-66-2755      TCGA-66-2757 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2758      TCGA-66-2759      TCGA-66-2763      TCGA-66-2765 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2766      TCGA-66-2767      TCGA-66-2770      TCGA-66-2771 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2773      TCGA-66-2777      TCGA-66-2778      TCGA-66-2780 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2781      TCGA-66-2782      TCGA-66-2783      TCGA-66-2785 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2786      TCGA-66-2787      TCGA-66-2788      TCGA-66-2789 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2791      TCGA-66-2792      TCGA-66-2793      TCGA-66-2794 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2795      TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  SNAI1 MUTATED                                             1
  SNAI1 WILD-TYPE                                          93
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  SNAI1 MUTATED                                        2              0
  SNAI1 WILD-TYPE                                     41             28
                 vv
clus              LIFELONG NON-SMOKER
  SNAI1 MUTATED                     1
  SNAI1 WILD-TYPE                   7
D94V12, multiclass
                                             clus
vv                                            SNAI1 MUTATED SNAI1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             1              93
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     1               7
D94V13, continuous
                 vv
clus               R0  R1  R2  RX
  SNAI1 MUTATED     4   0   0   0
  SNAI1 WILD-TYPE 143   2   4  10
D94V14, multiclass
    clus
vv   SNAI1 MUTATED SNAI1 WILD-TYPE
  R0             4             143
  R1             0               2
  R2             0               4
  RX             0              10

Clustering(95) Variable = APOBEC1 MUTATION ANALYSIS
D95V1, survival
                   sevent
clus2                0  1
  APOBEC1 MUTATED    3  3
  APOBEC1 WILD-TYPE 94 67
  APOBEC1 MUTATED APOBEC1 WILD-TYPE 
                6               161 
  APOBEC1 MUTATED APOBEC1 WILD-TYPE 
                3                67 
$`APOBEC1 MUTATED`
TCGA-21-5787 TCGA-22-1016 TCGA-34-5236 TCGA-60-2723 TCGA-66-2785 TCGA-85-6560 
       10.82        27.02         9.04        22.78         1.94         0.36 

$`APOBEC1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       31.63        29.85        21.57         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       14.10        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
        3.16        26.07        24.10         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.79 

  APOBEC1 MUTATED APOBEC1 WILD-TYPE 
             0.36              0.10 
  APOBEC1 MUTATED APOBEC1 WILD-TYPE 
            27.02            173.79 
  APOBEC1 MUTATED APOBEC1 WILD-TYPE 
             9.93             18.08 
[1] "0.4 - 27.0 (9.9)"   "0.1 - 173.8 (18.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE"   "APOBEC1 MUTATED" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
  "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE"   "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE"   "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"APOBEC1 WILD-TYPE"   "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE"   "APOBEC1 MUTATED" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
  "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE"   "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE"   "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"APOBEC1 WILD-TYPE"   "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE"   "APOBEC1 MUTATED" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
  "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE"   "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE"   "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"APOBEC1 WILD-TYPE"   "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" 
[1] "hr=" "2.5"
D95V2, continuous
D95V3, binary
                   cls
clus                  0   1
  APOBEC1 MUTATED     1   6
  APOBEC1 WILD-TYPE  46 125
[1] "tbl2"
                   cls
clus                [,1] [,2]
  APOBEC1 MUTATED      1    6
  APOBEC1 WILD-TYPE   46  125
        clus
vv       APOBEC1 MUTATED APOBEC1 WILD-TYPE
  FEMALE               1                46
  MALE                 6               125
D95V4, continuous
[1] "Remove cluster labels:" "APOBEC1 MUTATED"       
clus
  APOBEC1 MUTATED APOBEC1 WILD-TYPE 
                2                34 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3410        TCGA-18-3414 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-18-3419        TCGA-21-5782        TCGA-22-4591        TCGA-22-4593 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5480        TCGA-22-5482 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-34-5234        TCGA-37-4133        TCGA-37-4135        TCGA-37-5819 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2712        TCGA-60-2715        TCGA-60-2725 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-60-2726        TCGA-70-6723 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  APOBEC1 MUTATED                                       0
  APOBEC1 WILD-TYPE                                     5
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  APOBEC1 MUTATED                                        0
  APOBEC1 WILD-TYPE                                      1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  APOBEC1 MUTATED                                                             7
  APOBEC1 WILD-TYPE                                                         165
D95V5, multiclass
                                                             clus
vv                                                            APOBEC1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               7
                                                             clus
vv                                                            APOBEC1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               165
                   vv
clus                 T1  T2  T3  T4
  APOBEC1 MUTATED     0   5   2   0
  APOBEC1 WILD-TYPE  36 111  12  12
D95V6, multiclass
    clus
vv   APOBEC1 MUTATED APOBEC1 WILD-TYPE
  T1               0                36
  T2               5               111
  T3               2                12
  T4               0                12
                   vv
clus                 N0  N1  N2  N3
  APOBEC1 MUTATED     4   2   1   0
  APOBEC1 WILD-TYPE 113  37  16   5
D95V7, multiclass
    clus
vv   APOBEC1 MUTATED APOBEC1 WILD-TYPE
  N0               4               113
  N1               2                37
  N2               1                16
  N3               0                 5
                   vv
clus                 M0  M1  MX
  APOBEC1 MUTATED     7   0   0
  APOBEC1 WILD-TYPE 158   3   6
D95V8, multiclass
    clus
vv   APOBEC1 MUTATED APOBEC1 WILD-TYPE
  M0               7               158
  M1               0                 3
  MX               0                 6
                   vv
clus                 I II III+IV
  APOBEC1 MUTATED    3  1      3
  APOBEC1 WILD-TYPE 94 37     38
D95V9, multiclass
        clus
vv       APOBEC1 MUTATED APOBEC1 WILD-TYPE
  I                    3                94
  II                   1                37
  III+IV               3                38
D95V10, binary
                   cls
clus                  0   1
  APOBEC1 MUTATED     1   6
  APOBEC1 WILD-TYPE   3 168
[1] "tbl2"
                   cls
clus                [,1] [,2]
  APOBEC1 MUTATED      1    6
  APOBEC1 WILD-TYPE    3  168
     clus
vv    APOBEC1 MUTATED APOBEC1 WILD-TYPE
  NO                1                 3
  YES               6               168
D95V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  APOBEC1 MUTATED                                             4
  APOBEC1 WILD-TYPE                                          90
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  APOBEC1 MUTATED                                        1              0
  APOBEC1 WILD-TYPE                                     42             28
                   vv
clus                LIFELONG NON-SMOKER
  APOBEC1 MUTATED                     1
  APOBEC1 WILD-TYPE                   7
D95V12, multiclass
                                             clus
vv                                            APOBEC1 MUTATED APOBEC1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               4                90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                42
  CURRENT SMOKER                                            0                28
  LIFELONG NON-SMOKER                                       1                 7
D95V13, continuous
                   vv
clus                 R0  R1  R2  RX
  APOBEC1 MUTATED     5   0   0   1
  APOBEC1 WILD-TYPE 142   2   4   9
D95V14, multiclass
    clus
vv   APOBEC1 MUTATED APOBEC1 WILD-TYPE
  R0               5               142
  R1               0                 2
  R2               0                 4
  RX               1                 9

Clustering(96) Variable = BAGE2 MUTATION ANALYSIS
D96V1, survival
                 sevent
clus2              0  1
  BAGE2 MUTATED    2  1
  BAGE2 WILD-TYPE 95 69
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              3             164 
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              1              69 
$`BAGE2 MUTATED`
TCGA-22-4604 TCGA-37-4133 TCGA-60-2725 
       13.12         7.82        23.64 

$`BAGE2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       38.17        34.75        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4135 TCGA-37-4141 
        5.52         4.96         3.95         0.43         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
        8.48         7.00         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 
        0.95         0.59         0.39         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 
        0.10         2.04         1.02        10.22        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       30.61         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  BAGE2 MUTATED BAGE2 WILD-TYPE 
           7.82            0.10 
  BAGE2 MUTATED BAGE2 WILD-TYPE 
          23.64          173.79 
  BAGE2 MUTATED BAGE2 WILD-TYPE 
          13.12           17.98 
[1] "7.8 - 23.6 (13.1)"  "0.1 - 173.8 (18.0)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
  "BAGE2 MUTATED" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
  "BAGE2 MUTATED" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
  "BAGE2 MUTATED" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
[1] "hr=" "1.2"
D96V2, continuous
D96V3, binary
                 cls
clus                0   1
  BAGE2 MUTATED     0   3
  BAGE2 WILD-TYPE  47 128
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BAGE2 MUTATED      0    3
  BAGE2 WILD-TYPE   47  128
        clus
vv       BAGE2 MUTATED BAGE2 WILD-TYPE
  FEMALE             0              47
  MALE               3             128
D96V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  BAGE2 MUTATED                                       0
  BAGE2 WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  BAGE2 MUTATED                                        0
  BAGE2 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  BAGE2 MUTATED                                                             3
  BAGE2 WILD-TYPE                                                         169
D96V5, multiclass
                                                             clus
vv                                                            BAGE2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             3
                                                             clus
vv                                                            BAGE2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             169
                 vv
clus               T1  T2  T3  T4
  BAGE2 MUTATED     0   2   0   1
  BAGE2 WILD-TYPE  36 114  14  11
D96V6, multiclass
    clus
vv   BAGE2 MUTATED BAGE2 WILD-TYPE
  T1             0              36
  T2             2             114
  T3             0              14
  T4             1              11
                 vv
clus               N0  N1  N2  N3
  BAGE2 MUTATED     2   1   0   0
  BAGE2 WILD-TYPE 115  38  17   5
D96V7, multiclass
    clus
vv   BAGE2 MUTATED BAGE2 WILD-TYPE
  N0             2             115
  N1             1              38
  N2             0              17
  N3             0               5
                 vv
clus               M0  M1  MX
  BAGE2 MUTATED     3   0   0
  BAGE2 WILD-TYPE 162   3   6
D96V8, multiclass
    clus
vv   BAGE2 MUTATED BAGE2 WILD-TYPE
  M0             3             162
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  BAGE2 MUTATED    1  1      1
  BAGE2 WILD-TYPE 96 37     40
D96V9, multiclass
        clus
vv       BAGE2 MUTATED BAGE2 WILD-TYPE
  I                  1              96
  II                 1              37
  III+IV             1              40
D96V10, binary
                 cls
clus                0   1
  BAGE2 MUTATED     0   3
  BAGE2 WILD-TYPE   4 171
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BAGE2 MUTATED      0    3
  BAGE2 WILD-TYPE    4  171
     clus
vv    BAGE2 MUTATED BAGE2 WILD-TYPE
  NO              0               4
  YES             3             171
D96V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  BAGE2 MUTATED                                             0
  BAGE2 WILD-TYPE                                          94
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  BAGE2 MUTATED                                        2              1
  BAGE2 WILD-TYPE                                     41             27
                 vv
clus              LIFELONG NON-SMOKER
  BAGE2 MUTATED                     0
  BAGE2 WILD-TYPE                   8
D96V12, multiclass
                                             clus
vv                                            BAGE2 MUTATED BAGE2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             0              94
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D96V13, continuous
[1] "Remove cluster labels:" "BAGE2 MUTATED"         
clus
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              2             103 
     TCGA-18-3406      TCGA-18-3417      TCGA-21-1078      TCGA-21-5782 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-21-5786      TCGA-21-5787      TCGA-22-0944      TCGA-22-1002 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-1011      TCGA-22-1012      TCGA-22-1016      TCGA-22-4591 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4607      TCGA-22-4613      TCGA-22-5472 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-5473      TCGA-22-5474      TCGA-22-5480      TCGA-22-5482 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4533      TCGA-33-4547      TCGA-33-4582 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-33-4583      TCGA-33-4586      TCGA-34-5240      TCGA-34-5241 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-37-4135      TCGA-37-5819      TCGA-39-5021      TCGA-39-5022 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-39-5024      TCGA-39-5027      TCGA-39-5028      TCGA-39-5029 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-39-5030      TCGA-39-5031      TCGA-39-5035      TCGA-39-5036 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-39-5037      TCGA-39-5039      TCGA-43-2578      TCGA-43-3394 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-43-3920      TCGA-43-6143      TCGA-43-6647      TCGA-43-6770 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-43-6771      TCGA-56-1622      TCGA-56-5898      TCGA-56-6545 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2707      TCGA-60-2708      TCGA-60-2709 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-60-2710      TCGA-60-2711      TCGA-60-2712      TCGA-60-2713 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-60-2715      TCGA-60-2719      TCGA-60-2720      TCGA-60-2721 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-60-2723      TCGA-60-2724      TCGA-60-2726      TCGA-63-6202 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2727      TCGA-66-2734      TCGA-66-2742      TCGA-66-2744 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2754      TCGA-66-2755      TCGA-66-2756      TCGA-66-2757 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2758      TCGA-66-2759      TCGA-66-2763      TCGA-66-2765 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2766      TCGA-66-2767      TCGA-66-2770      TCGA-66-2771 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2773      TCGA-66-2777      TCGA-66-2778      TCGA-66-2780 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2781      TCGA-66-2782      TCGA-66-2783      TCGA-66-2786 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
                 vv
clus               R0  R1  R2  RX
  BAGE2 MUTATED     3   0   0   0
  BAGE2 WILD-TYPE 144   2   4  10
D96V14, multiclass
    clus
vv   BAGE2 MUTATED BAGE2 WILD-TYPE
  R0             3             144
  R1             0               2
  R2             0               4
  RX             0              10

Clustering(97) Variable = CD5L MUTATION ANALYSIS
D97V1, survival
                sevent
clus2             0  1
  CD5L MUTATED    5  3
  CD5L WILD-TYPE 92 67
  CD5L MUTATED CD5L WILD-TYPE 
             8            159 
  CD5L MUTATED CD5L WILD-TYPE 
             3             67 
$`CD5L MUTATED`
TCGA-22-5472 TCGA-22-5473 TCGA-34-5231 TCGA-34-5236 TCGA-56-6546 TCGA-66-2742 
       64.90        63.52        50.24         9.04         1.02        21.07 
TCGA-66-2768 TCGA-66-2771 
        2.01        19.00 

$`CD5L WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 
       38.17        34.75        13.12        19.30        11.77        31.69 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 
        2.63        61.61        32.84        51.78        32.68        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
       43.10         0.99         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       23.01         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  CD5L MUTATED CD5L WILD-TYPE 
          1.02           0.10 
  CD5L MUTATED CD5L WILD-TYPE 
         64.90         173.79 
  CD5L MUTATED CD5L WILD-TYPE 
        20.035         16.960 
[1] "1.0 - 64.9 (20.0)"  "0.1 - 173.8 (17.0)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED"   "CD5L MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
  "CD5L MUTATED" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED"   "CD5L MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
  "CD5L MUTATED" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED"   "CD5L MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
  "CD5L MUTATED" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
[1] "hr=" "1.3"
D97V2, continuous
D97V3, binary
                cls
clus               0   1
  CD5L MUTATED     0   8
  CD5L WILD-TYPE  47 123
[1] "tbl2"
                cls
clus             [,1] [,2]
  CD5L MUTATED      0    8
  CD5L WILD-TYPE   47  123
        clus
vv       CD5L MUTATED CD5L WILD-TYPE
  FEMALE            0             47
  MALE              8            123
D97V4, continuous
[1] "Remove cluster labels:" "CD5L MUTATED"          
clus
  CD5L MUTATED CD5L WILD-TYPE 
             2             34 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3410     TCGA-18-3414 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-3419     TCGA-21-5782     TCGA-21-5787     TCGA-22-4591 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-4593     TCGA-22-4595     TCGA-22-4599     TCGA-22-4601 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-4604     TCGA-22-4613     TCGA-22-5474     TCGA-22-5477 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-5478     TCGA-22-5480     TCGA-22-5482     TCGA-22-5485 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-5489     TCGA-22-5491     TCGA-22-5492     TCGA-34-5234 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-37-4133     TCGA-37-4135     TCGA-37-5819     TCGA-60-2698 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-60-2712     TCGA-60-2715     TCGA-60-2725     TCGA-60-2726 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-70-6722     TCGA-70-6723 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" 
                vv
clus             LUNG BASALOID SQUAMOUS CELL CARCINOMA
  CD5L MUTATED                                       0
  CD5L WILD-TYPE                                     5
                vv
clus             LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  CD5L MUTATED                                        0
  CD5L WILD-TYPE                                      1
                vv
clus             LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CD5L MUTATED                                                             8
  CD5L WILD-TYPE                                                         164
D97V5, multiclass
                                                             clus
vv                                                            CD5L MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            8
                                                             clus
vv                                                            CD5L WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            164
                vv
clus              T1  T2  T3  T4
  CD5L MUTATED     1   5   2   0
  CD5L WILD-TYPE  35 111  12  12
D97V6, multiclass
    clus
vv   CD5L MUTATED CD5L WILD-TYPE
  T1            1             35
  T2            5            111
  T3            2             12
  T4            0             12
                vv
clus              N0  N1  N2  N3
  CD5L MUTATED     5   3   0   0
  CD5L WILD-TYPE 112  36  17   5
D97V7, multiclass
    clus
vv   CD5L MUTATED CD5L WILD-TYPE
  N0            5            112
  N1            3             36
  N2            0             17
  N3            0              5
                vv
clus              M0  M1  MX
  CD5L MUTATED     6   1   1
  CD5L WILD-TYPE 159   2   5
D97V8, multiclass
    clus
vv   CD5L MUTATED CD5L WILD-TYPE
  M0            6            159
  M1            1              2
  MX            1              5
                vv
clus              I II III+IV
  CD5L MUTATED    3  3      1
  CD5L WILD-TYPE 94 35     40
D97V9, multiclass
        clus
vv       CD5L MUTATED CD5L WILD-TYPE
  I                 3             94
  II                3             35
  III+IV            1             40
D97V10, binary
                cls
clus               0   1
  CD5L MUTATED     0   8
  CD5L WILD-TYPE   4 166
[1] "tbl2"
                cls
clus             [,1] [,2]
  CD5L MUTATED      0    8
  CD5L WILD-TYPE    4  166
     clus
vv    CD5L MUTATED CD5L WILD-TYPE
  NO             0              4
  YES            8            166
D97V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  CD5L MUTATED                                             3
  CD5L WILD-TYPE                                          91
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  CD5L MUTATED                                        2              0
  CD5L WILD-TYPE                                     41             28
                vv
clus             LIFELONG NON-SMOKER
  CD5L MUTATED                     2
  CD5L WILD-TYPE                   6
D97V12, multiclass
                                             clus
vv                                            CD5L MUTATED CD5L WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            3             91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 2             41
  CURRENT SMOKER                                         0             28
  LIFELONG NON-SMOKER                                    2              6
D97V13, continuous
                vv
clus              R0  R1  R2  RX
  CD5L MUTATED     5   0   0   0
  CD5L WILD-TYPE 142   2   4  10
D97V14, multiclass
    clus
vv   CD5L MUTATED CD5L WILD-TYPE
  R0            5            142
  R1            0              2
  R2            0              4
  RX            0             10

Clustering(98) Variable = LIN37 MUTATION ANALYSIS
D98V1, survival
                 sevent
clus2              0  1
  LIN37 MUTATED    3  0
  LIN37 WILD-TYPE 94 70
  LIN37 MUTATED LIN37 WILD-TYPE 
              3             164 
  LIN37 MUTATED LIN37 WILD-TYPE 
              0              70 
$`LIN37 MUTATED`
TCGA-18-5592 TCGA-37-3789 TCGA-43-6647 
        3.02         0.43         6.02 

$`LIN37 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 
       43.76         6.15         2.79        90.51        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        5.52         4.96         3.95         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        8.48         7.00         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  LIN37 MUTATED LIN37 WILD-TYPE 
           0.43            0.10 
  LIN37 MUTATED LIN37 WILD-TYPE 
           6.02          173.79 
  LIN37 MUTATED LIN37 WILD-TYPE 
           3.02           18.46 
[1] "0.4 - 6.0 (3.0)"    "0.1 - 173.8 (18.5)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "LIN37 MUTATED" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "LIN37 MUTATED" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
  "LIN37 MUTATED" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "LIN37 MUTATED" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "LIN37 MUTATED" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
  "LIN37 MUTATED" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "LIN37 MUTATED" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "LIN37 MUTATED" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
  "LIN37 MUTATED" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
[1] "hr="     "1200000"
D98V2, continuous
D98V3, binary
                 cls
clus                0   1
  LIN37 MUTATED     1   2
  LIN37 WILD-TYPE  46 129
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LIN37 MUTATED      1    2
  LIN37 WILD-TYPE   46  129
        clus
vv       LIN37 MUTATED LIN37 WILD-TYPE
  FEMALE             1              46
  MALE               2             129
D98V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  LIN37 MUTATED                                       0
  LIN37 WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  LIN37 MUTATED                                        0
  LIN37 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  LIN37 MUTATED                                                             3
  LIN37 WILD-TYPE                                                         169
D98V5, multiclass
                                                             clus
vv                                                            LIN37 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             3
                                                             clus
vv                                                            LIN37 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             169
                 vv
clus               T1  T2  T3  T4
  LIN37 MUTATED     0   2   1   0
  LIN37 WILD-TYPE  36 114  13  12
D98V6, multiclass
    clus
vv   LIN37 MUTATED LIN37 WILD-TYPE
  T1             0              36
  T2             2             114
  T3             1              13
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  LIN37 MUTATED     2   1   0   0
  LIN37 WILD-TYPE 115  38  17   5
D98V7, multiclass
    clus
vv   LIN37 MUTATED LIN37 WILD-TYPE
  N0             2             115
  N1             1              38
  N2             0              17
  N3             0               5
                 vv
clus               M0  M1  MX
  LIN37 MUTATED     1   0   1
  LIN37 WILD-TYPE 164   3   5
D98V8, multiclass
[1] "Remove cluster labels:" "LIN37 MUTATED"         
clus
  LIN37 MUTATED LIN37 WILD-TYPE 
              2             172 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-5595      TCGA-21-1070      TCGA-21-1071      TCGA-21-1076 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-21-1077      TCGA-21-1078      TCGA-21-1081      TCGA-21-5782 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-21-5784      TCGA-21-5786      TCGA-21-5787      TCGA-22-0944 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-1002      TCGA-22-1011      TCGA-22-1012      TCGA-22-1016 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-4591      TCGA-22-4593      TCGA-22-4599      TCGA-22-4601 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-4604      TCGA-22-4607      TCGA-22-4613      TCGA-22-5471 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5472      TCGA-22-5473      TCGA-22-5474      TCGA-22-5477 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5478      TCGA-22-5480      TCGA-22-5482      TCGA-22-5485 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-33-4532 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-33-4533      TCGA-33-4538      TCGA-33-4547      TCGA-33-4566 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-33-4582      TCGA-33-4583      TCGA-33-4586      TCGA-33-6737 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-34-2596      TCGA-34-2600      TCGA-34-2608      TCGA-34-5231 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-34-5232      TCGA-34-5234      TCGA-34-5236      TCGA-34-5239 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-34-5240      TCGA-34-5241      TCGA-34-5927      TCGA-34-5928 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-34-5929      TCGA-37-3783      TCGA-37-4133      TCGA-37-4135 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-37-4141      TCGA-37-5819      TCGA-39-5016      TCGA-39-5019 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5021      TCGA-39-5022      TCGA-39-5024      TCGA-39-5027 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5028      TCGA-39-5029      TCGA-39-5030      TCGA-39-5031 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5035      TCGA-39-5036      TCGA-39-5037      TCGA-39-5039 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-43-2578      TCGA-43-3394      TCGA-43-3920      TCGA-43-5668 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-43-6143      TCGA-43-6770      TCGA-43-6771      TCGA-46-3765 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-46-3766      TCGA-46-3767      TCGA-46-3768      TCGA-46-3769 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4081      TCGA-56-1622 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-56-5897      TCGA-56-5898      TCGA-56-6545      TCGA-56-6546 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2707      TCGA-60-2708      TCGA-60-2709 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2710      TCGA-60-2711      TCGA-60-2712      TCGA-60-2713 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2715      TCGA-60-2719      TCGA-60-2720      TCGA-60-2721 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2722      TCGA-60-2723      TCGA-60-2724      TCGA-60-2725 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2726      TCGA-63-5128      TCGA-63-5131      TCGA-63-6202 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2727      TCGA-66-2734      TCGA-66-2742      TCGA-66-2744 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2754      TCGA-66-2755      TCGA-66-2756      TCGA-66-2757 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2758      TCGA-66-2759      TCGA-66-2763      TCGA-66-2765 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2766      TCGA-66-2767      TCGA-66-2768      TCGA-66-2770 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2771      TCGA-66-2773      TCGA-66-2777      TCGA-66-2778 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2780      TCGA-66-2781      TCGA-66-2782      TCGA-66-2783 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2785      TCGA-66-2786      TCGA-66-2787      TCGA-66-2788 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2789      TCGA-66-2791      TCGA-66-2792      TCGA-66-2793 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2794      TCGA-66-2795      TCGA-66-2800      TCGA-70-6722 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-70-6723      TCGA-85-6175      TCGA-85-6560      TCGA-85-6561 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
                 vv
clus               I II III+IV
  LIN37 MUTATED    1  2      0
  LIN37 WILD-TYPE 96 36     41
D98V9, multiclass
        clus
vv       LIN37 MUTATED LIN37 WILD-TYPE
  I                  1              96
  II                 2              36
  III+IV             0              41
D98V10, binary
                 cls
clus                0   1
  LIN37 MUTATED     0   3
  LIN37 WILD-TYPE   4 171
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LIN37 MUTATED      0    3
  LIN37 WILD-TYPE    4  171
     clus
vv    LIN37 MUTATED LIN37 WILD-TYPE
  NO              0               4
  YES             3             171
D98V11, continuous
[1] "Remove cluster labels:" "LIN37 MUTATED"         
clus
  LIN37 MUTATED LIN37 WILD-TYPE 
              2             144 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-3411      TCGA-18-3412      TCGA-18-3414      TCGA-18-3415 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-3416      TCGA-18-3417      TCGA-18-3419      TCGA-18-3421 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-4083      TCGA-18-4086      TCGA-21-1070      TCGA-21-1071 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4593      TCGA-22-4595      TCGA-22-4599 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-4601      TCGA-22-4604      TCGA-22-4607      TCGA-22-4613 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5471      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5480      TCGA-22-5482      TCGA-22-5485 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-33-4532 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-33-4533      TCGA-33-4538      TCGA-33-4547      TCGA-33-4566 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-33-4582      TCGA-33-4583      TCGA-33-4586      TCGA-33-6737 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-34-2596      TCGA-34-2600      TCGA-34-2608      TCGA-34-5231 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-34-5240      TCGA-34-5241      TCGA-34-5928      TCGA-34-5929 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-5819      TCGA-39-5016 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5019      TCGA-39-5021      TCGA-39-5022      TCGA-39-5024 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5027      TCGA-39-5028      TCGA-39-5029      TCGA-39-5030 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5031      TCGA-39-5035      TCGA-39-5036      TCGA-39-5037 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5039      TCGA-43-2578      TCGA-43-3394      TCGA-43-3920 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-43-5668      TCGA-43-6143      TCGA-43-6770      TCGA-43-6771 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-51-4079      TCGA-51-4081      TCGA-56-1622      TCGA-60-2707 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2708      TCGA-60-2709      TCGA-60-2710      TCGA-60-2711 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2713      TCGA-60-2715      TCGA-60-2719 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2720      TCGA-60-2721      TCGA-60-2722      TCGA-60-2723 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2724      TCGA-60-2725      TCGA-60-2726      TCGA-63-5131 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-63-6202      TCGA-66-2727      TCGA-66-2734      TCGA-66-2742 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2744      TCGA-66-2754      TCGA-66-2755      TCGA-66-2757 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2758      TCGA-66-2759      TCGA-66-2763      TCGA-66-2765 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2766      TCGA-66-2767      TCGA-66-2770      TCGA-66-2771 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2773      TCGA-66-2777      TCGA-66-2778      TCGA-66-2780 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2781      TCGA-66-2782      TCGA-66-2783      TCGA-66-2785 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2786      TCGA-66-2787      TCGA-66-2788      TCGA-66-2789 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2791      TCGA-66-2792      TCGA-66-2793      TCGA-66-2794 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2795      TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  LIN37 MUTATED                                             1
  LIN37 WILD-TYPE                                          93
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  LIN37 MUTATED                                        1              0
  LIN37 WILD-TYPE                                     42             28
                 vv
clus              LIFELONG NON-SMOKER
  LIN37 MUTATED                     1
  LIN37 WILD-TYPE                   7
D98V12, multiclass
                                             clus
vv                                            LIN37 MUTATED LIN37 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             1              93
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              42
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     1               7
D98V13, continuous
[1] "Remove cluster labels:" "LIN37 MUTATED"         
clus
  LIN37 MUTATED LIN37 WILD-TYPE 
              1             104 
     TCGA-18-3406      TCGA-18-3417      TCGA-21-1078      TCGA-21-5782 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-21-5786      TCGA-21-5787      TCGA-22-0944      TCGA-22-1002 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-1011      TCGA-22-1012      TCGA-22-1016      TCGA-22-4591 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4607      TCGA-22-4613      TCGA-22-5472 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5473      TCGA-22-5474      TCGA-22-5480      TCGA-22-5482 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4533      TCGA-33-4547      TCGA-33-4582 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-33-4583      TCGA-33-4586      TCGA-34-5240      TCGA-34-5241 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-5819      TCGA-39-5021 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-6143      TCGA-43-6770 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-43-6771      TCGA-56-1622      TCGA-56-5898      TCGA-56-6545 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2707      TCGA-60-2708      TCGA-60-2709 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2710      TCGA-60-2711      TCGA-60-2712      TCGA-60-2713 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2715      TCGA-60-2719      TCGA-60-2720      TCGA-60-2721 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2723      TCGA-60-2724      TCGA-60-2725      TCGA-60-2726 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-63-6202      TCGA-66-2727      TCGA-66-2734      TCGA-66-2742 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2744      TCGA-66-2754      TCGA-66-2755      TCGA-66-2756 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2757      TCGA-66-2758      TCGA-66-2759      TCGA-66-2763 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2765      TCGA-66-2766      TCGA-66-2767      TCGA-66-2770 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2771      TCGA-66-2773      TCGA-66-2777      TCGA-66-2778 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2780      TCGA-66-2781      TCGA-66-2782      TCGA-66-2783 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2786      TCGA-66-2787      TCGA-66-2788      TCGA-66-2789 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2791      TCGA-66-2792      TCGA-66-2793      TCGA-66-2794 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2795      TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
                 vv
clus               R0  R1  R2  RX
  LIN37 MUTATED     2   0   0   1
  LIN37 WILD-TYPE 145   2   4   9
D98V14, multiclass
    clus
vv   LIN37 MUTATED LIN37 WILD-TYPE
  R0             2             145
  R1             0               2
  R2             0               4
  RX             1               9

Clustering(99) Variable = OR4C11 MUTATION ANALYSIS
D99V1, survival
                  sevent
clus2               0  1
  OR4C11 MUTATED    4  3
  OR4C11 WILD-TYPE 93 67
  OR4C11 MUTATED OR4C11 WILD-TYPE 
               7              160 
  OR4C11 MUTATED OR4C11 WILD-TYPE 
               3               67 
$`OR4C11 MUTATED`
TCGA-21-1081 TCGA-22-4599 TCGA-22-5474 TCGA-39-5016 TCGA-39-5037 TCGA-66-2763 
        9.30        38.17        14.60        74.07         0.79         0.99 
TCGA-66-2777 
        2.01 

$`OR4C11 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-5782 
      115.59        46.88        60.89        34.78        15.55        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 
       14.10        27.02        20.45        35.08        24.13        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 
       24.33         1.94        27.35        15.58        35.64        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
        0.99        20.98        25.02         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 
        2.01        23.01        19.00         3.02        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  OR4C11 MUTATED OR4C11 WILD-TYPE 
            0.79             0.10 
  OR4C11 MUTATED OR4C11 WILD-TYPE 
           74.07           173.79 
  OR4C11 MUTATED OR4C11 WILD-TYPE 
            9.30            18.46 
[1] "0.8 - 74.1 (9.3)"   "0.1 - 173.8 (18.5)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE"   "OR4C11 MUTATED" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
  "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR4C11 WILD-TYPE"   "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR4C11 WILD-TYPE"   "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
  "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
  "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE"   "OR4C11 MUTATED" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
  "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR4C11 WILD-TYPE"   "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR4C11 WILD-TYPE"   "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
  "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
  "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE"   "OR4C11 MUTATED" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
  "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR4C11 WILD-TYPE"   "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR4C11 WILD-TYPE"   "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
  "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
  "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
[1] "hr=" "1.2"
D99V2, continuous
D99V3, binary
                  cls
clus                 0   1
  OR4C11 MUTATED     2   5
  OR4C11 WILD-TYPE  45 126
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4C11 MUTATED      2    5
  OR4C11 WILD-TYPE   45  126
        clus
vv       OR4C11 MUTATED OR4C11 WILD-TYPE
  FEMALE              2               45
  MALE                5              126
D99V4, continuous
[1] "Remove cluster labels:" "OR4C11 MUTATED"        
clus
  OR4C11 MUTATED OR4C11 WILD-TYPE 
               2               34 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4595       TCGA-22-4601       TCGA-22-4604 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5472       TCGA-22-5473       TCGA-22-5477 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-5478       TCGA-22-5480       TCGA-22-5482       TCGA-22-5485 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-5489       TCGA-22-5491       TCGA-22-5492       TCGA-34-5234 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-37-4133       TCGA-37-4135       TCGA-37-5819       TCGA-60-2698 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2715       TCGA-60-2725       TCGA-60-2726 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-70-6722       TCGA-70-6723 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR4C11 MUTATED                                       1
  OR4C11 WILD-TYPE                                     4
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR4C11 MUTATED                                        0
  OR4C11 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR4C11 MUTATED                                                             6
  OR4C11 WILD-TYPE                                                         166
D99V5, multiclass
                                                             clus
vv                                                            OR4C11 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              6
                                                             clus
vv                                                            OR4C11 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              166
                  vv
clus                T1  T2  T3  T4
  OR4C11 MUTATED     1   6   0   0
  OR4C11 WILD-TYPE  35 110  14  12
D99V6, multiclass
    clus
vv   OR4C11 MUTATED OR4C11 WILD-TYPE
  T1              1               35
  T2              6              110
  T3              0               14
  T4              0               12
                  vv
clus                N0  N1  N2  N3
  OR4C11 MUTATED     4   3   0   0
  OR4C11 WILD-TYPE 113  36  17   5
D99V7, multiclass
    clus
vv   OR4C11 MUTATED OR4C11 WILD-TYPE
  N0              4              113
  N1              3               36
  N2              0               17
  N3              0                5
                  vv
clus                M0  M1  MX
  OR4C11 MUTATED     7   0   0
  OR4C11 WILD-TYPE 158   3   6
D99V8, multiclass
    clus
vv   OR4C11 MUTATED OR4C11 WILD-TYPE
  M0              7              158
  M1              0                3
  MX              0                6
                  vv
clus                I II III+IV
  OR4C11 MUTATED    4  3      0
  OR4C11 WILD-TYPE 93 35     41
D99V9, multiclass
        clus
vv       OR4C11 MUTATED OR4C11 WILD-TYPE
  I                   4               93
  II                  3               35
  III+IV              0               41
D99V10, binary
                  cls
clus                 0   1
  OR4C11 MUTATED     0   7
  OR4C11 WILD-TYPE   4 167
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4C11 MUTATED      0    7
  OR4C11 WILD-TYPE    4  167
     clus
vv    OR4C11 MUTATED OR4C11 WILD-TYPE
  NO               0                4
  YES              7              167
D99V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR4C11 MUTATED                                             5
  OR4C11 WILD-TYPE                                          89
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR4C11 MUTATED                                        0              2
  OR4C11 WILD-TYPE                                     43             26
                  vv
clus               LIFELONG NON-SMOKER
  OR4C11 MUTATED                     0
  OR4C11 WILD-TYPE                   8
D99V12, multiclass
                                             clus
vv                                            OR4C11 MUTATED OR4C11 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              5               89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   0               43
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0                8
D99V13, continuous
                  vv
clus                R0  R1  R2  RX
  OR4C11 MUTATED     7   0   0   0
  OR4C11 WILD-TYPE 140   2   4  10
D99V14, multiclass
    clus
vv   OR4C11 MUTATED OR4C11 WILD-TYPE
  R0              7              140
  R1              0                2
  R2              0                4
  RX              0               10

Clustering(100) Variable = OR8K5 MUTATION ANALYSIS
D100V1, survival
                 sevent
clus2              0  1
  OR8K5 MUTATED    5  1
  OR8K5 WILD-TYPE 92 69
  OR8K5 MUTATED OR8K5 WILD-TYPE 
              6             161 
  OR8K5 MUTATED OR8K5 WILD-TYPE 
              1              69 
$`OR8K5 MUTATED`
TCGA-18-3417 TCGA-33-4583 TCGA-34-5927 TCGA-37-3783 TCGA-56-1622 TCGA-66-2787 
       24.92       141.34        22.95         3.95        28.93        40.01 

$`OR8K5 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 
       11.34        13.02        59.51        28.34         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-6737 
       97.94        43.10       173.79       103.53        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5928 TCGA-34-5929 
        9.04        10.82         7.73        14.07         5.52         4.96 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         0.39         2.07         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       25.97        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  OR8K5 MUTATED OR8K5 WILD-TYPE 
           3.95            0.10 
  OR8K5 MUTATED OR8K5 WILD-TYPE 
         141.34          173.79 
  OR8K5 MUTATED OR8K5 WILD-TYPE 
         26.925          16.600 
[1] "4.0 - 141.3 (26.9)" "0.1 - 173.8 (16.6)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE"   "OR8K5 MUTATED" "OR8K5 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE"   "OR8K5 MUTATED" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
  "OR8K5 MUTATED" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE"   "OR8K5 MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR8K5 WILD-TYPE"   "OR8K5 MUTATED" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "OR8K5 MUTATED" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE"   "OR8K5 MUTATED" "OR8K5 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE"   "OR8K5 MUTATED" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
  "OR8K5 MUTATED" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE"   "OR8K5 MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR8K5 WILD-TYPE"   "OR8K5 MUTATED" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "OR8K5 MUTATED" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE"   "OR8K5 MUTATED" "OR8K5 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE"   "OR8K5 MUTATED" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
  "OR8K5 MUTATED" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE"   "OR8K5 MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR8K5 WILD-TYPE"   "OR8K5 MUTATED" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "OR8K5 MUTATED" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
[1] "hr=" "3.8"
D100V2, continuous
D100V3, binary
                 cls
clus                0   1
  OR8K5 MUTATED     1   5
  OR8K5 WILD-TYPE  46 126
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8K5 MUTATED      1    5
  OR8K5 WILD-TYPE   46  126
        clus
vv       OR8K5 MUTATED OR8K5 WILD-TYPE
  FEMALE             1              46
  MALE               5             126
D100V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR8K5 MUTATED                                       0
  OR8K5 WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR8K5 MUTATED                                        0
  OR8K5 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR8K5 MUTATED                                                             6
  OR8K5 WILD-TYPE                                                         166
D100V5, multiclass
                                                             clus
vv                                                            OR8K5 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             6
                                                             clus
vv                                                            OR8K5 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             166
                 vv
clus               T1  T2  T3  T4
  OR8K5 MUTATED     3   2   1   0
  OR8K5 WILD-TYPE  33 114  13  12
D100V6, multiclass
    clus
vv   OR8K5 MUTATED OR8K5 WILD-TYPE
  T1             3              33
  T2             2             114
  T3             1              13
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  OR8K5 MUTATED     4   1   1   0
  OR8K5 WILD-TYPE 113  38  16   5
D100V7, multiclass
    clus
vv   OR8K5 MUTATED OR8K5 WILD-TYPE
  N0             4             113
  N1             1              38
  N2             1              16
  N3             0               5
                 vv
clus               M0  M1  MX
  OR8K5 MUTATED     5   1   0
  OR8K5 WILD-TYPE 160   2   6
D100V8, multiclass
    clus
vv   OR8K5 MUTATED OR8K5 WILD-TYPE
  M0             5             160
  M1             1               2
  MX             0               6
                 vv
clus               I II III+IV
  OR8K5 MUTATED    4  0      2
  OR8K5 WILD-TYPE 93 38     39
D100V9, multiclass
        clus
vv       OR8K5 MUTATED OR8K5 WILD-TYPE
  I                  4              93
  II                 0              38
  III+IV             2              39
D100V10, binary
                 cls
clus                0   1
  OR8K5 MUTATED     0   6
  OR8K5 WILD-TYPE   4 168
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8K5 MUTATED      0    6
  OR8K5 WILD-TYPE    4  168
     clus
vv    OR8K5 MUTATED OR8K5 WILD-TYPE
  NO              0               4
  YES             6             168
D100V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR8K5 MUTATED                                             3
  OR8K5 WILD-TYPE                                          91
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR8K5 MUTATED                                        1              0
  OR8K5 WILD-TYPE                                     42             28
                 vv
clus              LIFELONG NON-SMOKER
  OR8K5 MUTATED                     0
  OR8K5 WILD-TYPE                   8
D100V12, multiclass
                                             clus
vv                                            OR8K5 MUTATED OR8K5 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              42
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     0               8
D100V13, continuous
                 vv
clus               R0  R1  R2  RX
  OR8K5 MUTATED     5   0   0   0
  OR8K5 WILD-TYPE 142   2   4  10
D100V14, multiclass
    clus
vv   OR8K5 MUTATED OR8K5 WILD-TYPE
  R0             5             142
  R1             0               2
  R2             0               4
  RX             0              10

Clustering(101) Variable = GABRG3 MUTATION ANALYSIS
D101V1, survival
                  sevent
clus2               0  1
  GABRG3 MUTATED    5  4
  GABRG3 WILD-TYPE 92 66
  GABRG3 MUTATED GABRG3 WILD-TYPE 
               9              158 
  GABRG3 MUTATED GABRG3 WILD-TYPE 
               4               66 
$`GABRG3 MUTATED`
TCGA-18-4721 TCGA-22-4599 TCGA-33-4566 TCGA-33-6737 TCGA-51-4079 TCGA-56-6546 
       90.51        38.17       173.79        19.76         0.39         1.02 
TCGA-60-2724 TCGA-66-2734 TCGA-85-6561 
        1.22        43.10         0.79 

$`GABRG3 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
       43.76         6.15         2.79         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 
       14.10        27.02        20.45        35.08        24.13        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-34-2596 TCGA-34-2600 
       43.10       103.53       141.34        14.07         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-60-2698 
        0.39         2.07        28.93         0.10         2.04        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2742 TCGA-66-2744 
       22.78        23.64        11.77        16.96        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 
       49.05         0.36 

  GABRG3 MUTATED GABRG3 WILD-TYPE 
            0.39             0.10 
  GABRG3 MUTATED GABRG3 WILD-TYPE 
          173.79           141.34 
  GABRG3 MUTATED GABRG3 WILD-TYPE 
           19.76            17.42 
[1] "0.4 - 173.8 (19.8)" "0.1 - 141.3 (17.4)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE"   "GABRG3 MUTATED" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "GABRG3 MUTATED" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"GABRG3 WILD-TYPE"   "GABRG3 MUTATED" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"GABRG3 WILD-TYPE"   "GABRG3 MUTATED" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE"   "GABRG3 MUTATED" "GABRG3 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
  "GABRG3 MUTATED" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE"   "GABRG3 MUTATED" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE"   "GABRG3 MUTATED" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE"   "GABRG3 MUTATED" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE"   "GABRG3 MUTATED" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
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"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
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"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
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"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
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  "GABRG3 MUTATED" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
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"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
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"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
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"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
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"GABRG3 WILD-TYPE"   "GABRG3 MUTATED" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
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"GABRG3 WILD-TYPE"   "GABRG3 MUTATED" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
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"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
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"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
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"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
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"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
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"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
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"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
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"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE"   "GABRG3 MUTATED" "GABRG3 WILD-TYPE" 
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"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
  "GABRG3 MUTATED" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
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"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
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"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
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"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE"   "GABRG3 MUTATED" 
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"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE"   "GABRG3 MUTATED" 
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"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
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"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
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"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
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"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
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"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
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"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
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"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
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"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE"   "GABRG3 MUTATED" 
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"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
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"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
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"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
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"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE"   "GABRG3 MUTATED" 
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"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
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  "GABRG3 MUTATED" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
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"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
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"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
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"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
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"GABRG3 WILD-TYPE"   "GABRG3 MUTATED" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
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"GABRG3 WILD-TYPE"   "GABRG3 MUTATED" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
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"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
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"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
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"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
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"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
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"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
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      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE"   "GABRG3 MUTATED" "GABRG3 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
  "GABRG3 MUTATED" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
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"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE"   "GABRG3 MUTATED" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE"   "GABRG3 MUTATED" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE"   "GABRG3 MUTATED" 
[1] "hr=" "1.6"
D101V2, continuous
D101V3, binary
                  cls
clus                 0   1
  GABRG3 MUTATED     3   7
  GABRG3 WILD-TYPE  44 124
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRG3 MUTATED      3    7
  GABRG3 WILD-TYPE   44  124
        clus
vv       GABRG3 MUTATED GABRG3 WILD-TYPE
  FEMALE              3               44
  MALE                7              124
D101V4, continuous
[1] "Remove cluster labels:" "GABRG3 MUTATED"        
clus
  GABRG3 MUTATED GABRG3 WILD-TYPE 
               1               35 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4595       TCGA-22-4601       TCGA-22-4604 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5472       TCGA-22-5473       TCGA-22-5474 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5482 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-34-5234       TCGA-37-4133       TCGA-37-4135       TCGA-37-5819 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-60-2698       TCGA-60-2712       TCGA-60-2715       TCGA-60-2725 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-60-2726       TCGA-70-6722       TCGA-70-6723 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  GABRG3 MUTATED                                       0
  GABRG3 WILD-TYPE                                     5
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  GABRG3 MUTATED                                        0
  GABRG3 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  GABRG3 MUTATED                                                            10
  GABRG3 WILD-TYPE                                                         162
D101V5, multiclass
                                                             clus
vv                                                            GABRG3 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             10
                                                             clus
vv                                                            GABRG3 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              162
                  vv
clus                T1  T2  T3  T4
  GABRG3 MUTATED     1   8   1   0
  GABRG3 WILD-TYPE  35 108  13  12
D101V6, multiclass
    clus
vv   GABRG3 MUTATED GABRG3 WILD-TYPE
  T1              1               35
  T2              8              108
  T3              1               13
  T4              0               12
                  vv
clus                N0  N1  N2  N3
  GABRG3 MUTATED     8   1   1   0
  GABRG3 WILD-TYPE 109  38  16   5
D101V7, multiclass
    clus
vv   GABRG3 MUTATED GABRG3 WILD-TYPE
  N0              8              109
  N1              1               38
  N2              1               16
  N3              0                5
                  vv
clus                M0  M1  MX
  GABRG3 MUTATED     8   0   1
  GABRG3 WILD-TYPE 157   3   5
D101V8, multiclass
    clus
vv   GABRG3 MUTATED GABRG3 WILD-TYPE
  M0              8              157
  M1              0                3
  MX              1                5
                  vv
clus                I II III+IV
  GABRG3 MUTATED    5  2      2
  GABRG3 WILD-TYPE 92 36     39
D101V9, multiclass
        clus
vv       GABRG3 MUTATED GABRG3 WILD-TYPE
  I                   5               92
  II                  2               36
  III+IV              2               39
D101V10, binary
                  cls
clus                 0   1
  GABRG3 MUTATED     0  10
  GABRG3 WILD-TYPE   4 164
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRG3 MUTATED      0   10
  GABRG3 WILD-TYPE    4  164
     clus
vv    GABRG3 MUTATED GABRG3 WILD-TYPE
  NO               0                4
  YES             10              164
D101V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  GABRG3 MUTATED                                             8
  GABRG3 WILD-TYPE                                          86
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  GABRG3 MUTATED                                        0              2
  GABRG3 WILD-TYPE                                     43             26
                  vv
clus               LIFELONG NON-SMOKER
  GABRG3 MUTATED                     0
  GABRG3 WILD-TYPE                   8
D101V12, multiclass
                                             clus
vv                                            GABRG3 MUTATED GABRG3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              8               86
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   0               43
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0                8
D101V13, continuous
                  vv
clus                R0  R1  R2  RX
  GABRG3 MUTATED     8   0   0   0
  GABRG3 WILD-TYPE 139   2   4  10
D101V14, multiclass
    clus
vv   GABRG3 MUTATED GABRG3 WILD-TYPE
  R0              8              139
  R1              0                2
  R2              0                4
  RX              0               10

Clustering(102) Variable = KRTAP10-7 MUTATION ANALYSIS
D102V1, survival
                     sevent
clus2                  0  1
  KRTAP10-7 MUTATED    3  3
  KRTAP10-7 WILD-TYPE 94 67
  KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE 
                  6                 161 
  KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE 
                  3                  67 
$`KRTAP10-7 MUTATED`
TCGA-18-4083 TCGA-18-4086 TCGA-34-5232 TCGA-39-5028 TCGA-66-2767 TCGA-66-2785 
        6.15         2.79        51.78         1.71         2.01         1.94 

$`KRTAP10-7 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
       43.76        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5234 TCGA-34-5236 
        2.63        61.61        32.84        50.24        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        1.02         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 
       19.00        12.03         3.98        12.00        24.95        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE 
               1.71                0.10 
  KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE 
              51.78              173.79 
  KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE 
               2.40               18.84 
[1] "1.7 - 51.8 (2.4)"   "0.1 - 173.8 (18.8)"
         TCGA-18-3406          TCGA-18-3407          TCGA-18-3408 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-18-3409          TCGA-18-3410          TCGA-18-3411 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-18-3412          TCGA-18-3414          TCGA-18-3415 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-18-3416          TCGA-18-3417          TCGA-18-3419 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-18-3421          TCGA-18-4083          TCGA-18-4086 
"KRTAP10-7 WILD-TYPE"   "KRTAP10-7 MUTATED"   "KRTAP10-7 MUTATED" 
         TCGA-18-4721          TCGA-18-5592          TCGA-18-5595 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-21-1070          TCGA-21-1071          TCGA-21-1076 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-21-1077          TCGA-21-1078          TCGA-21-1081 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-21-5782          TCGA-21-5784          TCGA-21-5786 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-21-5787          TCGA-22-0944          TCGA-22-1002 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-1011          TCGA-22-1012          TCGA-22-1016 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-4591          TCGA-22-4593          TCGA-22-4595 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-4599          TCGA-22-4601          TCGA-22-4604 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-4607          TCGA-22-4613          TCGA-22-5471 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5472          TCGA-22-5473          TCGA-22-5474 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5477          TCGA-22-5478          TCGA-22-5480 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5482          TCGA-22-5485          TCGA-22-5489 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5491          TCGA-22-5492          TCGA-33-4532 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-33-4533          TCGA-33-4538          TCGA-33-4547 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-33-4566          TCGA-33-4582          TCGA-33-4583 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-33-4586          TCGA-33-6737          TCGA-34-2596 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-34-2600          TCGA-34-2608          TCGA-34-5231 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-34-5232          TCGA-34-5234          TCGA-34-5236 
  "KRTAP10-7 MUTATED" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-34-5239          TCGA-34-5240          TCGA-34-5241 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-34-5927          TCGA-34-5928          TCGA-34-5929 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-37-3783          TCGA-37-3789          TCGA-37-4133 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-37-4135          TCGA-37-4141          TCGA-37-5819 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5016          TCGA-39-5019          TCGA-39-5021 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5022          TCGA-39-5024          TCGA-39-5027 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5028          TCGA-39-5029          TCGA-39-5030 
  "KRTAP10-7 MUTATED" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5031          TCGA-39-5035          TCGA-39-5036 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5037          TCGA-39-5039          TCGA-43-2578 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-43-3394          TCGA-43-3920          TCGA-43-5668 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-43-6143          TCGA-43-6647          TCGA-43-6770 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-43-6771          TCGA-46-3768          TCGA-46-6025 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-46-6026          TCGA-51-4079          TCGA-51-4080 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-51-4081          TCGA-56-1622          TCGA-56-5897 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-56-6545          TCGA-56-6546          TCGA-60-2698 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2707          TCGA-60-2708          TCGA-60-2709 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2710          TCGA-60-2711          TCGA-60-2712 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2713          TCGA-60-2715          TCGA-60-2719 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2720          TCGA-60-2721          TCGA-60-2722 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2723          TCGA-60-2724          TCGA-60-2725 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2726          TCGA-66-2727          TCGA-66-2734 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2742          TCGA-66-2744          TCGA-66-2754 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2755          TCGA-66-2756          TCGA-66-2757 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2758          TCGA-66-2759          TCGA-66-2763 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2765          TCGA-66-2766          TCGA-66-2767 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE"   "KRTAP10-7 MUTATED" 
         TCGA-66-2768          TCGA-66-2770          TCGA-66-2771 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2773          TCGA-66-2777          TCGA-66-2778 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2780          TCGA-66-2781          TCGA-66-2782 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2783          TCGA-66-2785          TCGA-66-2786 
"KRTAP10-7 WILD-TYPE"   "KRTAP10-7 MUTATED" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2787          TCGA-66-2788          TCGA-66-2789 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2791          TCGA-66-2792          TCGA-66-2793 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2794          TCGA-66-2795          TCGA-66-2800 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-85-6560          TCGA-85-6561 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-18-3406          TCGA-18-3407          TCGA-18-3408 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-18-3409          TCGA-18-3410          TCGA-18-3411 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-18-3412          TCGA-18-3414          TCGA-18-3415 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-18-3416          TCGA-18-3417          TCGA-18-3419 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-18-3421          TCGA-18-4083          TCGA-18-4086 
"KRTAP10-7 WILD-TYPE"   "KRTAP10-7 MUTATED"   "KRTAP10-7 MUTATED" 
         TCGA-18-4721          TCGA-18-5592          TCGA-18-5595 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-21-1070          TCGA-21-1071          TCGA-21-1076 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-21-1077          TCGA-21-1078          TCGA-21-1081 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-21-5782          TCGA-21-5784          TCGA-21-5786 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-21-5787          TCGA-22-0944          TCGA-22-1002 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-1011          TCGA-22-1012          TCGA-22-1016 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-4591          TCGA-22-4593          TCGA-22-4595 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-4599          TCGA-22-4601          TCGA-22-4604 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-4607          TCGA-22-4613          TCGA-22-5471 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5472          TCGA-22-5473          TCGA-22-5474 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5477          TCGA-22-5478          TCGA-22-5480 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5482          TCGA-22-5485          TCGA-22-5489 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5491          TCGA-22-5492          TCGA-33-4532 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-33-4533          TCGA-33-4538          TCGA-33-4547 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-33-4566          TCGA-33-4582          TCGA-33-4583 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-33-4586          TCGA-33-6737          TCGA-34-2596 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-34-2600          TCGA-34-2608          TCGA-34-5231 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-34-5232          TCGA-34-5234          TCGA-34-5236 
  "KRTAP10-7 MUTATED" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-34-5239          TCGA-34-5240          TCGA-34-5241 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-34-5927          TCGA-34-5928          TCGA-34-5929 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-37-3783          TCGA-37-3789          TCGA-37-4133 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-37-4135          TCGA-37-4141          TCGA-37-5819 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5016          TCGA-39-5019          TCGA-39-5021 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5022          TCGA-39-5024          TCGA-39-5027 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5028          TCGA-39-5029          TCGA-39-5030 
  "KRTAP10-7 MUTATED" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5031          TCGA-39-5035          TCGA-39-5036 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5037          TCGA-39-5039          TCGA-43-2578 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-43-3394          TCGA-43-3920          TCGA-43-5668 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-43-6143          TCGA-43-6647          TCGA-43-6770 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-43-6771          TCGA-46-3768          TCGA-46-6025 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-46-6026          TCGA-51-4079          TCGA-51-4080 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-51-4081          TCGA-56-1622          TCGA-56-5897 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-56-6545          TCGA-56-6546          TCGA-60-2698 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2707          TCGA-60-2708          TCGA-60-2709 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2710          TCGA-60-2711          TCGA-60-2712 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2713          TCGA-60-2715          TCGA-60-2719 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2720          TCGA-60-2721          TCGA-60-2722 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2723          TCGA-60-2724          TCGA-60-2725 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2726          TCGA-66-2727          TCGA-66-2734 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2742          TCGA-66-2744          TCGA-66-2754 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2755          TCGA-66-2756          TCGA-66-2757 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2758          TCGA-66-2759          TCGA-66-2763 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2765          TCGA-66-2766          TCGA-66-2767 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE"   "KRTAP10-7 MUTATED" 
         TCGA-66-2768          TCGA-66-2770          TCGA-66-2771 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2773          TCGA-66-2777          TCGA-66-2778 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2780          TCGA-66-2781          TCGA-66-2782 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2783          TCGA-66-2785          TCGA-66-2786 
"KRTAP10-7 WILD-TYPE"   "KRTAP10-7 MUTATED" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2787          TCGA-66-2788          TCGA-66-2789 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2791          TCGA-66-2792          TCGA-66-2793 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2794          TCGA-66-2795          TCGA-66-2800 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-85-6560          TCGA-85-6561 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-18-3406          TCGA-18-3407          TCGA-18-3408 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-18-3409          TCGA-18-3410          TCGA-18-3411 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-18-3412          TCGA-18-3414          TCGA-18-3415 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-18-3416          TCGA-18-3417          TCGA-18-3419 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-18-3421          TCGA-18-4083          TCGA-18-4086 
"KRTAP10-7 WILD-TYPE"   "KRTAP10-7 MUTATED"   "KRTAP10-7 MUTATED" 
         TCGA-18-4721          TCGA-18-5592          TCGA-18-5595 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-21-1070          TCGA-21-1071          TCGA-21-1076 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-21-1077          TCGA-21-1078          TCGA-21-1081 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-21-5782          TCGA-21-5784          TCGA-21-5786 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-21-5787          TCGA-22-0944          TCGA-22-1002 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-1011          TCGA-22-1012          TCGA-22-1016 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-4591          TCGA-22-4593          TCGA-22-4595 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-4599          TCGA-22-4601          TCGA-22-4604 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-4607          TCGA-22-4613          TCGA-22-5471 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5472          TCGA-22-5473          TCGA-22-5474 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5477          TCGA-22-5478          TCGA-22-5480 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5482          TCGA-22-5485          TCGA-22-5489 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5491          TCGA-22-5492          TCGA-33-4532 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-33-4533          TCGA-33-4538          TCGA-33-4547 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-33-4566          TCGA-33-4582          TCGA-33-4583 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-33-4586          TCGA-33-6737          TCGA-34-2596 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-34-2600          TCGA-34-2608          TCGA-34-5231 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-34-5232          TCGA-34-5234          TCGA-34-5236 
  "KRTAP10-7 MUTATED" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-34-5239          TCGA-34-5240          TCGA-34-5241 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-34-5927          TCGA-34-5928          TCGA-34-5929 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-37-3783          TCGA-37-3789          TCGA-37-4133 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-37-4135          TCGA-37-4141          TCGA-37-5819 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5016          TCGA-39-5019          TCGA-39-5021 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5022          TCGA-39-5024          TCGA-39-5027 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5028          TCGA-39-5029          TCGA-39-5030 
  "KRTAP10-7 MUTATED" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5031          TCGA-39-5035          TCGA-39-5036 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5037          TCGA-39-5039          TCGA-43-2578 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-43-3394          TCGA-43-3920          TCGA-43-5668 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-43-6143          TCGA-43-6647          TCGA-43-6770 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-43-6771          TCGA-46-3768          TCGA-46-6025 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-46-6026          TCGA-51-4079          TCGA-51-4080 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-51-4081          TCGA-56-1622          TCGA-56-5897 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-56-6545          TCGA-56-6546          TCGA-60-2698 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2707          TCGA-60-2708          TCGA-60-2709 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2710          TCGA-60-2711          TCGA-60-2712 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2713          TCGA-60-2715          TCGA-60-2719 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2720          TCGA-60-2721          TCGA-60-2722 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2723          TCGA-60-2724          TCGA-60-2725 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2726          TCGA-66-2727          TCGA-66-2734 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2742          TCGA-66-2744          TCGA-66-2754 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2755          TCGA-66-2756          TCGA-66-2757 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2758          TCGA-66-2759          TCGA-66-2763 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2765          TCGA-66-2766          TCGA-66-2767 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE"   "KRTAP10-7 MUTATED" 
         TCGA-66-2768          TCGA-66-2770          TCGA-66-2771 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2773          TCGA-66-2777          TCGA-66-2778 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2780          TCGA-66-2781          TCGA-66-2782 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2783          TCGA-66-2785          TCGA-66-2786 
"KRTAP10-7 WILD-TYPE"   "KRTAP10-7 MUTATED" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2787          TCGA-66-2788          TCGA-66-2789 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2791          TCGA-66-2792          TCGA-66-2793 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2794          TCGA-66-2795          TCGA-66-2800 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-85-6560          TCGA-85-6561 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
[1] "hr=" "3.1"
D102V2, continuous
D102V3, binary
                     cls
clus                    0   1
  KRTAP10-7 MUTATED     1   6
  KRTAP10-7 WILD-TYPE  46 125
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  KRTAP10-7 MUTATED      1    6
  KRTAP10-7 WILD-TYPE   46  125
        clus
vv       KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE
  FEMALE                 1                  46
  MALE                   6                 125
D102V4, continuous
                     vv
clus                  LUNG BASALOID SQUAMOUS CELL CARCINOMA
  KRTAP10-7 MUTATED                                       0
  KRTAP10-7 WILD-TYPE                                     5
                     vv
clus                  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  KRTAP10-7 MUTATED                                        0
  KRTAP10-7 WILD-TYPE                                      1
                     vv
clus                  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  KRTAP10-7 MUTATED                                                             7
  KRTAP10-7 WILD-TYPE                                                         165
D102V5, multiclass
                                                             clus
vv                                                            KRTAP10-7 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                 7
                                                             clus
vv                                                            KRTAP10-7 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                         5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                        1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                 165
                     vv
clus                   T1  T2  T3  T4
  KRTAP10-7 MUTATED     2   4   0   1
  KRTAP10-7 WILD-TYPE  34 112  14  11
D102V6, multiclass
    clus
vv   KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE
  T1                 2                  34
  T2                 4                 112
  T3                 0                  14
  T4                 1                  11
                     vv
clus                   N0  N1  N2  N3
  KRTAP10-7 MUTATED     3   3   0   1
  KRTAP10-7 WILD-TYPE 114  36  17   4
D102V7, multiclass
    clus
vv   KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE
  N0                 3                 114
  N1                 3                  36
  N2                 0                  17
  N3                 1                   4
                     vv
clus                   M0  M1  MX
  KRTAP10-7 MUTATED     7   0   0
  KRTAP10-7 WILD-TYPE 158   3   6
D102V8, multiclass
    clus
vv   KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE
  M0                 7                 158
  M1                 0                   3
  MX                 0                   6
                     vv
clus                   I II III+IV
  KRTAP10-7 MUTATED    3  2      2
  KRTAP10-7 WILD-TYPE 94 36     39
D102V9, multiclass
        clus
vv       KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE
  I                      3                  94
  II                     2                  36
  III+IV                 2                  39
D102V10, binary
                     cls
clus                    0   1
  KRTAP10-7 MUTATED     0   7
  KRTAP10-7 WILD-TYPE   4 167
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  KRTAP10-7 MUTATED      0    7
  KRTAP10-7 WILD-TYPE    4  167
     clus
vv    KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE
  NO                  0                   4
  YES                 7                 167
D102V11, continuous
                     vv
clus                  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  KRTAP10-7 MUTATED                                             3
  KRTAP10-7 WILD-TYPE                                          91
                     vv
clus                  CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  KRTAP10-7 MUTATED                                        2              1
  KRTAP10-7 WILD-TYPE                                     41             27
                     vv
clus                  LIFELONG NON-SMOKER
  KRTAP10-7 MUTATED                     0
  KRTAP10-7 WILD-TYPE                   8
D102V12, multiclass
                                             clus
vv                                            KRTAP10-7 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 3
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      2
  CURRENT SMOKER                                              1
  LIFELONG NON-SMOKER                                         0
                                             clus
vv                                            KRTAP10-7 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                  91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                       41
  CURRENT SMOKER                                               27
  LIFELONG NON-SMOKER                                           8
D102V13, continuous
[1] "Remove cluster labels:" "KRTAP10-7 MUTATED"     
clus
  KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE 
                  2                 103 
         TCGA-18-3406          TCGA-18-3417          TCGA-21-1078 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-21-5782          TCGA-21-5786          TCGA-21-5787 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-0944          TCGA-22-1002          TCGA-22-1011 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-1012          TCGA-22-1016          TCGA-22-4591 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-4593          TCGA-22-4607          TCGA-22-4613 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5472          TCGA-22-5473          TCGA-22-5474 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5480          TCGA-22-5482          TCGA-22-5492 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-33-4533          TCGA-33-4547          TCGA-33-4582 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-33-4583          TCGA-33-4586          TCGA-34-5240 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-34-5241          TCGA-37-4133          TCGA-37-4135 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-37-5819          TCGA-39-5021          TCGA-39-5022 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5024          TCGA-39-5027          TCGA-39-5029 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5030          TCGA-39-5031          TCGA-39-5035 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5036          TCGA-39-5037          TCGA-39-5039 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-43-2578          TCGA-43-3394          TCGA-43-3920 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-43-6143          TCGA-43-6647          TCGA-43-6770 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-43-6771          TCGA-56-1622          TCGA-56-5898 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-56-6545          TCGA-56-6546          TCGA-60-2707 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2708          TCGA-60-2709          TCGA-60-2710 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2711          TCGA-60-2712          TCGA-60-2713 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2715          TCGA-60-2719          TCGA-60-2720 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2721          TCGA-60-2723          TCGA-60-2724 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2725          TCGA-60-2726          TCGA-63-6202 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2727          TCGA-66-2734          TCGA-66-2742 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2744          TCGA-66-2754          TCGA-66-2755 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2756          TCGA-66-2757          TCGA-66-2758 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2759          TCGA-66-2763          TCGA-66-2765 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2766          TCGA-66-2770          TCGA-66-2771 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2773          TCGA-66-2777          TCGA-66-2778 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2780          TCGA-66-2781          TCGA-66-2782 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2783          TCGA-66-2786          TCGA-66-2787 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2788          TCGA-66-2789          TCGA-66-2791 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2792          TCGA-66-2793          TCGA-66-2794 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2795          TCGA-66-2800          TCGA-85-6560 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-85-6561 
"KRTAP10-7 WILD-TYPE" 
                     vv
clus                   R0  R1  R2  RX
  KRTAP10-7 MUTATED     6   0   0   0
  KRTAP10-7 WILD-TYPE 141   2   4  10
D102V14, multiclass
    clus
vv   KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE
  R0                 6                 141
  R1                 0                   2
  R2                 0                   4
  RX                 0                  10

Clustering(103) Variable = UGT3A2 MUTATION ANALYSIS
D103V1, survival
                  sevent
clus2               0  1
  UGT3A2 MUTATED    6  3
  UGT3A2 WILD-TYPE 91 67
  UGT3A2 MUTATED UGT3A2 WILD-TYPE 
               9              158 
  UGT3A2 MUTATED UGT3A2 WILD-TYPE 
               3               67 
$`UGT3A2 MUTATED`
TCGA-18-3411 TCGA-18-3421 TCGA-21-1081 TCGA-22-4613 TCGA-34-5240 TCGA-56-5897 
       46.52        43.76         9.30        11.77         7.73         0.10 
TCGA-66-2785 TCGA-66-2789 TCGA-66-2792 
        1.94         4.04        30.02 

$`UGT3A2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 
       12.16         4.47        81.07        79.46         4.80        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-4083 
       13.02        59.51        28.34        24.92         1.61         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 
       60.89        34.78        15.55        31.63        29.85        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       19.30        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
        0.79        71.34        11.74        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         4.96         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        0.39         2.07        28.93         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
       21.07         0.99         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 
       12.03         3.98        12.00        24.95        25.97        40.01 
TCGA-66-2788 TCGA-66-2791 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
       22.98         5.03        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  UGT3A2 MUTATED UGT3A2 WILD-TYPE 
            0.10             0.36 
  UGT3A2 MUTATED UGT3A2 WILD-TYPE 
           46.52           173.79 
  UGT3A2 MUTATED UGT3A2 WILD-TYPE 
            9.30            18.46 
[1] "0.1 - 46.5 (9.3)"   "0.4 - 173.8 (18.5)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
  "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
  "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
  "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
  "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
  "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
  "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
[1] "hr=" "1.2"
D103V2, continuous
D103V3, binary
                  cls
clus                 0   1
  UGT3A2 MUTATED     3   7
  UGT3A2 WILD-TYPE  44 124
[1] "tbl2"
                  cls
clus               [,1] [,2]
  UGT3A2 MUTATED      3    7
  UGT3A2 WILD-TYPE   44  124
        clus
vv       UGT3A2 MUTATED UGT3A2 WILD-TYPE
  FEMALE              3               44
  MALE                7              124
D103V4, continuous
[1] "Remove cluster labels:" "UGT3A2 MUTATED"        
clus
  UGT3A2 MUTATED UGT3A2 WILD-TYPE 
               1               35 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4595       TCGA-22-4599       TCGA-22-4601 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-4604       TCGA-22-5472       TCGA-22-5473       TCGA-22-5474 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5482 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-34-5234       TCGA-37-4133       TCGA-37-4135       TCGA-37-5819 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-60-2698       TCGA-60-2712       TCGA-60-2715       TCGA-60-2725 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-60-2726       TCGA-70-6722       TCGA-70-6723 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  UGT3A2 MUTATED                                       1
  UGT3A2 WILD-TYPE                                     4
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  UGT3A2 MUTATED                                        0
  UGT3A2 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  UGT3A2 MUTATED                                                             9
  UGT3A2 WILD-TYPE                                                         163
D103V5, multiclass
                                                             clus
vv                                                            UGT3A2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              9
                                                             clus
vv                                                            UGT3A2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              163
                  vv
clus                T1  T2  T3  T4
  UGT3A2 MUTATED     3   7   0   0
  UGT3A2 WILD-TYPE  33 109  14  12
D103V6, multiclass
    clus
vv   UGT3A2 MUTATED UGT3A2 WILD-TYPE
  T1              3               33
  T2              7              109
  T3              0               14
  T4              0               12
                  vv
clus                N0  N1  N2  N3
  UGT3A2 MUTATED     4   4   1   1
  UGT3A2 WILD-TYPE 113  35  16   4
D103V7, multiclass
    clus
vv   UGT3A2 MUTATED UGT3A2 WILD-TYPE
  N0              4              113
  N1              4               35
  N2              1               16
  N3              1                4
                  vv
clus                M0  M1  MX
  UGT3A2 MUTATED     9   0   1
  UGT3A2 WILD-TYPE 156   3   5
D103V8, multiclass
    clus
vv   UGT3A2 MUTATED UGT3A2 WILD-TYPE
  M0              9              156
  M1              0                3
  MX              1                5
                  vv
clus                I II III+IV
  UGT3A2 MUTATED    4  4      2
  UGT3A2 WILD-TYPE 93 34     39
D103V9, multiclass
        clus
vv       UGT3A2 MUTATED UGT3A2 WILD-TYPE
  I                   4               93
  II                  4               34
  III+IV              2               39
D103V10, binary
                  cls
clus                 0   1
  UGT3A2 MUTATED     0  10
  UGT3A2 WILD-TYPE   4 164
[1] "tbl2"
                  cls
clus               [,1] [,2]
  UGT3A2 MUTATED      0   10
  UGT3A2 WILD-TYPE    4  164
     clus
vv    UGT3A2 MUTATED UGT3A2 WILD-TYPE
  NO               0                4
  YES             10              164
D103V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  UGT3A2 MUTATED                                             6
  UGT3A2 WILD-TYPE                                          88
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  UGT3A2 MUTATED                                        2              2
  UGT3A2 WILD-TYPE                                     41             26
                  vv
clus               LIFELONG NON-SMOKER
  UGT3A2 MUTATED                     0
  UGT3A2 WILD-TYPE                   8
D103V12, multiclass
                                             clus
vv                                            UGT3A2 MUTATED UGT3A2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              6               88
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               41
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0                8
D103V13, continuous
                  vv
clus                R0  R1  R2  RX
  UGT3A2 MUTATED     8   0   0   0
  UGT3A2 WILD-TYPE 139   2   4  10
D103V14, multiclass
    clus
vv   UGT3A2 MUTATED UGT3A2 WILD-TYPE
  R0              8              139
  R1              0                2
  R2              0                4
  RX              0               10

Clustering(104) Variable = PRB2 MUTATION ANALYSIS
D104V1, survival
                sevent
clus2             0  1
  PRB2 MUTATED    5  2
  PRB2 WILD-TYPE 92 68
  PRB2 MUTATED PRB2 WILD-TYPE 
             7            160 
  PRB2 MUTATED PRB2 WILD-TYPE 
             2             68 
$`PRB2 MUTATED`
TCGA-18-3414 TCGA-18-4721 TCGA-37-4141 TCGA-39-5022 TCGA-60-2711 TCGA-66-2787 
       13.02        90.51         0.39        55.17        29.19        40.01 
TCGA-66-2788 
       22.98 

$`PRB2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        6.15         2.79         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 
        4.96         3.95         0.43         7.82         6.81         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       74.07        44.71        68.58        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       25.97         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  PRB2 MUTATED PRB2 WILD-TYPE 
          0.39           0.10 
  PRB2 MUTATED PRB2 WILD-TYPE 
         90.51         173.79 
  PRB2 MUTATED PRB2 WILD-TYPE 
         29.19          16.78 
[1] "0.4 - 90.5 (29.2)"  "0.1 - 173.8 (16.8)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
  "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
  "PRB2 MUTATED"   "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
  "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
  "PRB2 MUTATED"   "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
  "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
  "PRB2 MUTATED"   "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
[1] "hr=" "2"  
D104V2, continuous
D104V3, binary
                cls
clus               0   1
  PRB2 MUTATED     2   5
  PRB2 WILD-TYPE  45 126
[1] "tbl2"
                cls
clus             [,1] [,2]
  PRB2 MUTATED      2    5
  PRB2 WILD-TYPE   45  126
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  FEMALE            2             45
  MALE              5            126
D104V4, continuous
[1] "Remove cluster labels:" "PRB2 MUTATED"          
clus
  PRB2 MUTATED PRB2 WILD-TYPE 
             1             35 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3410     TCGA-18-3419 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5787     TCGA-22-4591     TCGA-22-4593 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-4595     TCGA-22-4599     TCGA-22-4601     TCGA-22-4604 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5472     TCGA-22-5473     TCGA-22-5474 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-5477     TCGA-22-5478     TCGA-22-5480     TCGA-22-5482 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-5485     TCGA-22-5489     TCGA-22-5491     TCGA-22-5492 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-34-5234     TCGA-37-4133     TCGA-37-4135     TCGA-37-5819 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-60-2698     TCGA-60-2712     TCGA-60-2715     TCGA-60-2725 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-60-2726     TCGA-70-6722     TCGA-70-6723 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
                vv
clus             LUNG BASALOID SQUAMOUS CELL CARCINOMA
  PRB2 MUTATED                                       0
  PRB2 WILD-TYPE                                     5
                vv
clus             LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  PRB2 MUTATED                                        0
  PRB2 WILD-TYPE                                      1
                vv
clus             LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PRB2 MUTATED                                                             7
  PRB2 WILD-TYPE                                                         165
D104V5, multiclass
                                                             clus
vv                                                            PRB2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            7
                                                             clus
vv                                                            PRB2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            165
                vv
clus              T1  T2  T3  T4
  PRB2 MUTATED     3   3   0   1
  PRB2 WILD-TYPE  33 113  14  11
D104V6, multiclass
    clus
vv   PRB2 MUTATED PRB2 WILD-TYPE
  T1            3             33
  T2            3            113
  T3            0             14
  T4            1             11
                vv
clus              N0  N1  N2  N3
  PRB2 MUTATED     6   1   0   0
  PRB2 WILD-TYPE 111  38  17   5
D104V7, multiclass
    clus
vv   PRB2 MUTATED PRB2 WILD-TYPE
  N0            6            111
  N1            1             38
  N2            0             17
  N3            0              5
                vv
clus              M0  M1  MX
  PRB2 MUTATED     6   1   0
  PRB2 WILD-TYPE 159   2   6
D104V8, multiclass
    clus
vv   PRB2 MUTATED PRB2 WILD-TYPE
  M0            6            159
  M1            1              2
  MX            0              6
                vv
clus              I II III+IV
  PRB2 MUTATED    6  0      1
  PRB2 WILD-TYPE 91 38     40
D104V9, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  I                 6             91
  II                0             38
  III+IV            1             40
D104V10, binary
                cls
clus               0   1
  PRB2 MUTATED     0   7
  PRB2 WILD-TYPE   4 167
[1] "tbl2"
                cls
clus             [,1] [,2]
  PRB2 MUTATED      0    7
  PRB2 WILD-TYPE    4  167
     clus
vv    PRB2 MUTATED PRB2 WILD-TYPE
  NO             0              4
  YES            7            167
D104V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  PRB2 MUTATED                                             6
  PRB2 WILD-TYPE                                          88
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  PRB2 MUTATED                                        0              0
  PRB2 WILD-TYPE                                     43             28
                vv
clus             LIFELONG NON-SMOKER
  PRB2 MUTATED                     1
  PRB2 WILD-TYPE                   7
D104V12, multiclass
                                             clus
vv                                            PRB2 MUTATED PRB2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            6             88
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 0             43
  CURRENT SMOKER                                         0             28
  LIFELONG NON-SMOKER                                    1              7
D104V13, continuous
                vv
clus              R0  R1  R2  RX
  PRB2 MUTATED     7   0   0   0
  PRB2 WILD-TYPE 140   2   4  10
D104V14, multiclass
    clus
vv   PRB2 MUTATED PRB2 WILD-TYPE
  R0            7            140
  R1            0              2
  R2            0              4
  RX            0             10

Clustering(105) Variable = HDAC9 MUTATION ANALYSIS
D105V1, survival
                 sevent
clus2              0  1
  HDAC9 MUTATED    8  6
  HDAC9 WILD-TYPE 89 64
  HDAC9 MUTATED HDAC9 WILD-TYPE 
             14             153 
  HDAC9 MUTATED HDAC9 WILD-TYPE 
              6              64 
$`HDAC9 MUTATED`
TCGA-18-3409 TCGA-21-1070 TCGA-22-5472 TCGA-22-5478 TCGA-33-4533 TCGA-33-4566 
       79.46       115.59        64.90         0.79       114.05       173.79 
TCGA-33-6737 TCGA-34-2596 TCGA-34-5240 TCGA-43-3394 TCGA-66-2742 TCGA-66-2759 
       19.76         2.63         7.73        11.57        21.07        25.02 
TCGA-66-2791 TCGA-85-6561 
        5.03         0.79 

$`HDAC9 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 
        6.15         2.79        90.51         3.02        27.16        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 
       13.12        19.30        11.77        31.69        63.52        14.60 
TCGA-22-5477 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       44.22        71.34        11.74        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 
       16.60        82.98        97.94        43.10       103.53       141.34 
TCGA-33-4586 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
       14.07        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
        9.04        10.82        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
        0.79        17.88        18.08        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       16.96        43.10         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
        0.99        20.98         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       40.01        22.98         4.04        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
        4.01        49.05         0.36 

  HDAC9 MUTATED HDAC9 WILD-TYPE 
           0.79            0.10 
  HDAC9 MUTATED HDAC9 WILD-TYPE 
         173.79          141.34 
  HDAC9 MUTATED HDAC9 WILD-TYPE 
         20.415          16.960 
[1] "0.8 - 173.8 (20.4)" "0.1 - 141.3 (17.0)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"HDAC9 WILD-TYPE"   "HDAC9 MUTATED"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
  "HDAC9 MUTATED" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
  "HDAC9 MUTATED" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"HDAC9 WILD-TYPE"   "HDAC9 MUTATED"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
  "HDAC9 MUTATED" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
  "HDAC9 MUTATED" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"HDAC9 WILD-TYPE"   "HDAC9 MUTATED"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
  "HDAC9 MUTATED" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
  "HDAC9 MUTATED" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" 
[1] "hr=" "2"  
D105V2, continuous
D105V3, binary
                 cls
clus                0   1
  HDAC9 MUTATED     3  11
  HDAC9 WILD-TYPE  44 120
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HDAC9 MUTATED      3   11
  HDAC9 WILD-TYPE   44  120
        clus
vv       HDAC9 MUTATED HDAC9 WILD-TYPE
  FEMALE             3              44
  MALE              11             120
D105V4, continuous
[1] "Remove cluster labels:" "HDAC9 MUTATED"         
clus
  HDAC9 MUTATED HDAC9 WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-4604      TCGA-22-4613      TCGA-22-5473      TCGA-22-5474 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5480      TCGA-22-5482      TCGA-22-5485 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-34-5234 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-5819      TCGA-60-2698 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2725      TCGA-60-2726 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  HDAC9 MUTATED                                       2
  HDAC9 WILD-TYPE                                     3
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  HDAC9 MUTATED                                        0
  HDAC9 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  HDAC9 MUTATED                                                            12
  HDAC9 WILD-TYPE                                                         160
D105V5, multiclass
                                                             clus
vv                                                            HDAC9 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            12
                                                             clus
vv                                                            HDAC9 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             160
                 vv
clus               T1  T2  T3  T4
  HDAC9 MUTATED     1  12   1   0
  HDAC9 WILD-TYPE  35 104  13  12
D105V6, multiclass
    clus
vv   HDAC9 MUTATED HDAC9 WILD-TYPE
  T1             1              35
  T2            12             104
  T3             1              13
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  HDAC9 MUTATED     8   3   2   1
  HDAC9 WILD-TYPE 109  36  15   4
D105V7, multiclass
    clus
vv   HDAC9 MUTATED HDAC9 WILD-TYPE
  N0             8             109
  N1             3              36
  N2             2              15
  N3             1               4
                 vv
clus               M0  M1  MX
  HDAC9 MUTATED    13   1   0
  HDAC9 WILD-TYPE 152   2   6
D105V8, multiclass
    clus
vv   HDAC9 MUTATED HDAC9 WILD-TYPE
  M0            13             152
  M1             1               2
  MX             0               6
                 vv
clus               I II III+IV
  HDAC9 MUTATED    5  3      5
  HDAC9 WILD-TYPE 92 35     36
D105V9, multiclass
        clus
vv       HDAC9 MUTATED HDAC9 WILD-TYPE
  I                  5              92
  II                 3              35
  III+IV             5              36
D105V10, binary
                 cls
clus                0   1
  HDAC9 MUTATED     0  14
  HDAC9 WILD-TYPE   4 160
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HDAC9 MUTATED      0   14
  HDAC9 WILD-TYPE    4  160
     clus
vv    HDAC9 MUTATED HDAC9 WILD-TYPE
  NO              0               4
  YES            14             160
D105V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  HDAC9 MUTATED                                             7
  HDAC9 WILD-TYPE                                          87
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  HDAC9 MUTATED                                        4              3
  HDAC9 WILD-TYPE                                     39             25
                 vv
clus              LIFELONG NON-SMOKER
  HDAC9 MUTATED                     0
  HDAC9 WILD-TYPE                   8
D105V12, multiclass
                                             clus
vv                                            HDAC9 MUTATED HDAC9 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             7              87
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  4              39
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     0               8
D105V13, continuous
                 vv
clus               R0  R1  R2  RX
  HDAC9 MUTATED    11   1   0   0
  HDAC9 WILD-TYPE 136   1   4  10
D105V14, multiclass
    clus
vv   HDAC9 MUTATED HDAC9 WILD-TYPE
  R0            11             136
  R1             1               1
  R2             0               4
  RX             0              10

Clustering(106) Variable = HAO1 MUTATION ANALYSIS
D106V1, survival
                sevent
clus2             0  1
  HAO1 MUTATED    6  1
  HAO1 WILD-TYPE 91 69
  HAO1 MUTATED HAO1 WILD-TYPE 
             7            160 
  HAO1 MUTATED HAO1 WILD-TYPE 
             1             69 
$`HAO1 MUTATED`
TCGA-21-1070 TCGA-22-4599 TCGA-37-3783 TCGA-43-3920 TCGA-60-2713 TCGA-66-2755 
      115.59        38.17         3.95        18.84        47.87         0.92 
TCGA-66-2785 
        1.94 

$`HAO1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 
       14.10        27.02        20.45        35.08        24.13        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        4.96         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-5668 TCGA-43-6143 
        0.79        17.88        18.08        11.57         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       29.19         9.01        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2756 TCGA-66-2757 
       43.10        21.07         0.99         2.01         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 
       12.03         3.98        12.00        24.95        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  HAO1 MUTATED HAO1 WILD-TYPE 
          0.92           0.10 
  HAO1 MUTATED HAO1 WILD-TYPE 
        115.59         173.79 
  HAO1 MUTATED HAO1 WILD-TYPE 
         18.84          17.42 
[1] "0.9 - 115.6 (18.8)" "0.1 - 173.8 (17.4)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE"   "HAO1 MUTATED" "HAO1 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "HAO1 MUTATED" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE"   "HAO1 MUTATED" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"HAO1 WILD-TYPE"   "HAO1 MUTATED" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
  "HAO1 MUTATED" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE"   "HAO1 MUTATED" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE"   "HAO1 MUTATED" "HAO1 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE"   "HAO1 MUTATED" "HAO1 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "HAO1 MUTATED" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE"   "HAO1 MUTATED" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"HAO1 WILD-TYPE"   "HAO1 MUTATED" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
  "HAO1 MUTATED" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE"   "HAO1 MUTATED" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE"   "HAO1 MUTATED" "HAO1 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE"   "HAO1 MUTATED" "HAO1 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "HAO1 MUTATED" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE"   "HAO1 MUTATED" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"HAO1 WILD-TYPE"   "HAO1 MUTATED" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
  "HAO1 MUTATED" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE"   "HAO1 MUTATED" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE"   "HAO1 MUTATED" "HAO1 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
[1] "hr=" "3.6"
D106V2, continuous
D106V3, binary
                cls
clus               0   1
  HAO1 MUTATED     2   5
  HAO1 WILD-TYPE  45 126
[1] "tbl2"
                cls
clus             [,1] [,2]
  HAO1 MUTATED      2    5
  HAO1 WILD-TYPE   45  126
        clus
vv       HAO1 MUTATED HAO1 WILD-TYPE
  FEMALE            2             45
  MALE              5            126
D106V4, continuous
[1] "Remove cluster labels:" "HAO1 MUTATED"          
clus
  HAO1 MUTATED HAO1 WILD-TYPE 
             1             35 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3410     TCGA-18-3414 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-3419     TCGA-21-5782     TCGA-21-5787     TCGA-22-4591 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-4593     TCGA-22-4595     TCGA-22-4601     TCGA-22-4604 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5472     TCGA-22-5473     TCGA-22-5474 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-5477     TCGA-22-5478     TCGA-22-5480     TCGA-22-5482 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-5485     TCGA-22-5489     TCGA-22-5491     TCGA-22-5492 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-34-5234     TCGA-37-4133     TCGA-37-4135     TCGA-37-5819 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-60-2698     TCGA-60-2712     TCGA-60-2715     TCGA-60-2725 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-60-2726     TCGA-70-6722     TCGA-70-6723 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
                vv
clus             LUNG BASALOID SQUAMOUS CELL CARCINOMA
  HAO1 MUTATED                                       0
  HAO1 WILD-TYPE                                     5
                vv
clus             LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  HAO1 MUTATED                                        0
  HAO1 WILD-TYPE                                      1
                vv
clus             LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  HAO1 MUTATED                                                             7
  HAO1 WILD-TYPE                                                         165
D106V5, multiclass
                                                             clus
vv                                                            HAO1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            7
                                                             clus
vv                                                            HAO1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            165
                vv
clus              T1  T2  T3  T4
  HAO1 MUTATED     0   5   2   0
  HAO1 WILD-TYPE  36 111  12  12
D106V6, multiclass
    clus
vv   HAO1 MUTATED HAO1 WILD-TYPE
  T1            0             36
  T2            5            111
  T3            2             12
  T4            0             12
                vv
clus              N0  N1  N2  N3
  HAO1 MUTATED     6   0   1   0
  HAO1 WILD-TYPE 111  39  16   5
D106V7, multiclass
    clus
vv   HAO1 MUTATED HAO1 WILD-TYPE
  N0            6            111
  N1            0             39
  N2            1             16
  N3            0              5
                vv
clus              M0  M1  MX
  HAO1 MUTATED     7   0   0
  HAO1 WILD-TYPE 158   3   6
D106V8, multiclass
    clus
vv   HAO1 MUTATED HAO1 WILD-TYPE
  M0            7            158
  M1            0              3
  MX            0              6
                vv
clus              I II III+IV
  HAO1 MUTATED    5  0      2
  HAO1 WILD-TYPE 92 38     39
D106V9, multiclass
        clus
vv       HAO1 MUTATED HAO1 WILD-TYPE
  I                 5             92
  II                0             38
  III+IV            2             39
D106V10, binary
                cls
clus               0   1
  HAO1 MUTATED     0   7
  HAO1 WILD-TYPE   4 167
[1] "tbl2"
                cls
clus             [,1] [,2]
  HAO1 MUTATED      0    7
  HAO1 WILD-TYPE    4  167
     clus
vv    HAO1 MUTATED HAO1 WILD-TYPE
  NO             0              4
  YES            7            167
D106V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  HAO1 MUTATED                                             3
  HAO1 WILD-TYPE                                          91
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  HAO1 MUTATED                                        1              2
  HAO1 WILD-TYPE                                     42             26
                vv
clus             LIFELONG NON-SMOKER
  HAO1 MUTATED                     0
  HAO1 WILD-TYPE                   8
D106V12, multiclass
                                             clus
vv                                            HAO1 MUTATED HAO1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            3             91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 1             42
  CURRENT SMOKER                                         2             26
  LIFELONG NON-SMOKER                                    0              8
D106V13, continuous
                vv
clus              R0  R1  R2  RX
  HAO1 MUTATED     7   0   0   0
  HAO1 WILD-TYPE 140   2   4  10
D106V14, multiclass
    clus
vv   HAO1 MUTATED HAO1 WILD-TYPE
  R0            7            140
  R1            0              2
  R2            0              4
  RX            0             10

Clustering(107) Variable = OR2T12 MUTATION ANALYSIS
D107V1, survival
                  sevent
clus2               0  1
  OR2T12 MUTATED    5  3
  OR2T12 WILD-TYPE 92 67
  OR2T12 MUTATED OR2T12 WILD-TYPE 
               8              159 
  OR2T12 MUTATED OR2T12 WILD-TYPE 
               3               67 
$`OR2T12 MUTATED`
TCGA-18-3409 TCGA-18-4086 TCGA-18-5592 TCGA-21-5786 TCGA-22-5473 TCGA-34-5236 
       79.46         2.79         3.02        21.57        63.52         9.04 
TCGA-60-2713 TCGA-66-2777 
       47.87         2.01 

$`OR2T12 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 
        6.15        90.51        27.16       115.59        46.88        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5787 
       34.78        15.55         9.30        31.63        29.85        10.82 
TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 
        7.33         4.31         1.74        14.10        27.02        20.45 
TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 
       35.08        24.13        38.17        34.75        13.12        19.30 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       11.77        31.69        64.90        14.60        44.22         0.79 
TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       71.34        11.74        30.08        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       82.98       114.05        97.94        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 
      141.34        14.07        19.76         2.63        61.61        32.84 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       50.24        51.78        32.68        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
       22.95         5.52         4.96         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        6.81         0.39         3.39        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
       27.35        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       23.01        19.00         3.02        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  OR2T12 MUTATED OR2T12 WILD-TYPE 
            2.01             0.10 
  OR2T12 MUTATED OR2T12 WILD-TYPE 
           79.46           173.79 
  OR2T12 MUTATED OR2T12 WILD-TYPE 
          15.305           17.880 
[1] "2.0 - 79.5 (15.3)"  "0.1 - 173.8 (17.9)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE"   "OR2T12 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE"   "OR2T12 MUTATED" "OR2T12 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
  "OR2T12 MUTATED" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE"   "OR2T12 MUTATED" "OR2T12 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE"   "OR2T12 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "OR2T12 MUTATED" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
  "OR2T12 MUTATED" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
  "OR2T12 MUTATED" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE"   "OR2T12 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE"   "OR2T12 MUTATED" "OR2T12 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
  "OR2T12 MUTATED" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE"   "OR2T12 MUTATED" "OR2T12 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE"   "OR2T12 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "OR2T12 MUTATED" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
  "OR2T12 MUTATED" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
  "OR2T12 MUTATED" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE"   "OR2T12 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE"   "OR2T12 MUTATED" "OR2T12 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
  "OR2T12 MUTATED" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE"   "OR2T12 MUTATED" "OR2T12 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE"   "OR2T12 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "OR2T12 MUTATED" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
  "OR2T12 MUTATED" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
  "OR2T12 MUTATED" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
[1] "hr=" "1.2"
D107V2, continuous
D107V3, binary
                  cls
clus                 0   1
  OR2T12 MUTATED     0   8
  OR2T12 WILD-TYPE  47 123
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2T12 MUTATED      0    8
  OR2T12 WILD-TYPE   47  123
        clus
vv       OR2T12 MUTATED OR2T12 WILD-TYPE
  FEMALE              0               47
  MALE                8              123
D107V4, continuous
[1] "Remove cluster labels:" "OR2T12 MUTATED"        
clus
  OR2T12 MUTATED OR2T12 WILD-TYPE 
               1               35 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4595       TCGA-22-4599       TCGA-22-4601 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-4604       TCGA-22-4613       TCGA-22-5472       TCGA-22-5474 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5482 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-34-5234       TCGA-37-4133       TCGA-37-4135       TCGA-37-5819 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-60-2698       TCGA-60-2712       TCGA-60-2715       TCGA-60-2725 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-60-2726       TCGA-70-6722       TCGA-70-6723 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR2T12 MUTATED                                       1
  OR2T12 WILD-TYPE                                     4
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR2T12 MUTATED                                        0
  OR2T12 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR2T12 MUTATED                                                             7
  OR2T12 WILD-TYPE                                                         165
D107V5, multiclass
                                                             clus
vv                                                            OR2T12 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              7
                                                             clus
vv                                                            OR2T12 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              165
                  vv
clus                T1  T2  T3  T4
  OR2T12 MUTATED     1   4   3   0
  OR2T12 WILD-TYPE  35 112  11  12
D107V6, multiclass
    clus
vv   OR2T12 MUTATED OR2T12 WILD-TYPE
  T1              1               35
  T2              4              112
  T3              3               11
  T4              0               12
                  vv
clus                N0  N1  N2  N3
  OR2T12 MUTATED     8   0   0   0
  OR2T12 WILD-TYPE 109  39  17   5
D107V7, multiclass
    clus
vv   OR2T12 MUTATED OR2T12 WILD-TYPE
  N0              8              109
  N1              0               39
  N2              0               17
  N3              0                5
                  vv
clus                M0  M1  MX
  OR2T12 MUTATED     8   0   0
  OR2T12 WILD-TYPE 157   3   6
D107V8, multiclass
    clus
vv   OR2T12 MUTATED OR2T12 WILD-TYPE
  M0              8              157
  M1              0                3
  MX              0                6
                  vv
clus                I II III+IV
  OR2T12 MUTATED    5  2      0
  OR2T12 WILD-TYPE 92 36     41
D107V9, multiclass
        clus
vv       OR2T12 MUTATED OR2T12 WILD-TYPE
  I                   5               92
  II                  2               36
  III+IV              0               41
D107V10, binary
                  cls
clus                 0   1
  OR2T12 MUTATED     0   8
  OR2T12 WILD-TYPE   4 166
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2T12 MUTATED      0    8
  OR2T12 WILD-TYPE    4  166
     clus
vv    OR2T12 MUTATED OR2T12 WILD-TYPE
  NO               0                4
  YES              8              166
D107V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR2T12 MUTATED                                             2
  OR2T12 WILD-TYPE                                          92
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR2T12 MUTATED                                        3              2
  OR2T12 WILD-TYPE                                     40             26
                  vv
clus               LIFELONG NON-SMOKER
  OR2T12 MUTATED                     0
  OR2T12 WILD-TYPE                   8
D107V12, multiclass
                                             clus
vv                                            OR2T12 MUTATED OR2T12 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              2               92
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   3               40
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0                8
D107V13, continuous
                  vv
clus                R0  R1  R2  RX
  OR2T12 MUTATED     7   0   0   0
  OR2T12 WILD-TYPE 140   2   4  10
D107V14, multiclass
    clus
vv   OR2T12 MUTATED OR2T12 WILD-TYPE
  R0              7              140
  R1              0                2
  R2              0                4
  RX              0               10

Clustering(108) Variable = OR5AS1 MUTATION ANALYSIS
D108V1, survival
                  sevent
clus2               0  1
  OR5AS1 MUTATED    6  1
  OR5AS1 WILD-TYPE 91 69
  OR5AS1 MUTATED OR5AS1 WILD-TYPE 
               7              160 
  OR5AS1 MUTATED OR5AS1 WILD-TYPE 
               1               69 
$`OR5AS1 MUTATED`
TCGA-18-3409 TCGA-18-4721 TCGA-33-4566 TCGA-39-5031 TCGA-39-5036 TCGA-43-3920 
       79.46        90.51       173.79        27.35        35.64        18.84 
TCGA-66-2734 
       43.10 

$`OR5AS1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        6.15         2.79         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
       43.10       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 
        1.71        24.33         1.94        15.58         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       18.08        11.57         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2742 
       22.78         1.22        23.64        11.77        16.96        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  OR5AS1 MUTATED OR5AS1 WILD-TYPE 
           18.84             0.10 
  OR5AS1 MUTATED OR5AS1 WILD-TYPE 
          173.79           141.34 
  OR5AS1 MUTATED OR5AS1 WILD-TYPE 
          43.100           15.565 
[1] "18.8 - 173.8 (43.1)" "0.1 - 141.3 (15.6)" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" "OR5AS1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
  "OR5AS1 MUTATED" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" "OR5AS1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
  "OR5AS1 MUTATED" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" "OR5AS1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
  "OR5AS1 MUTATED" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
[1] "hr="     "7.9e+07"
D108V2, continuous
D108V3, binary
                  cls
clus                 0   1
  OR5AS1 MUTATED     2   5
  OR5AS1 WILD-TYPE  45 126
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5AS1 MUTATED      2    5
  OR5AS1 WILD-TYPE   45  126
        clus
vv       OR5AS1 MUTATED OR5AS1 WILD-TYPE
  FEMALE              2               45
  MALE                5              126
D108V4, continuous
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR5AS1 MUTATED                                       1
  OR5AS1 WILD-TYPE                                     4
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR5AS1 MUTATED                                        0
  OR5AS1 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR5AS1 MUTATED                                                             6
  OR5AS1 WILD-TYPE                                                         166
D108V5, multiclass
                                                             clus
vv                                                            OR5AS1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              6
                                                             clus
vv                                                            OR5AS1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              166
                  vv
clus                T1  T2  T3  T4
  OR5AS1 MUTATED     3   4   0   0
  OR5AS1 WILD-TYPE  33 112  14  12
D108V6, multiclass
    clus
vv   OR5AS1 MUTATED OR5AS1 WILD-TYPE
  T1              3               33
  T2              4              112
  T3              0               14
  T4              0               12
                  vv
clus                N0  N1  N2  N3
  OR5AS1 MUTATED     7   0   0   0
  OR5AS1 WILD-TYPE 110  39  17   5
D108V7, multiclass
    clus
vv   OR5AS1 MUTATED OR5AS1 WILD-TYPE
  N0              7              110
  N1              0               39
  N2              0               17
  N3              0                5
                  vv
clus                M0  M1  MX
  OR5AS1 MUTATED     7   0   0
  OR5AS1 WILD-TYPE 158   3   6
D108V8, multiclass
    clus
vv   OR5AS1 MUTATED OR5AS1 WILD-TYPE
  M0              7              158
  M1              0                3
  MX              0                6
                  vv
clus                I II III+IV
  OR5AS1 MUTATED    6  0      0
  OR5AS1 WILD-TYPE 91 38     41
D108V9, multiclass
        clus
vv       OR5AS1 MUTATED OR5AS1 WILD-TYPE
  I                   6               91
  II                  0               38
  III+IV              0               41
D108V10, binary
                  cls
clus                 0   1
  OR5AS1 MUTATED     0   7
  OR5AS1 WILD-TYPE   4 167
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5AS1 MUTATED      0    7
  OR5AS1 WILD-TYPE    4  167
     clus
vv    OR5AS1 MUTATED OR5AS1 WILD-TYPE
  NO               0                4
  YES              7              167
D108V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR5AS1 MUTATED                                             5
  OR5AS1 WILD-TYPE                                          89
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR5AS1 MUTATED                                        1              1
  OR5AS1 WILD-TYPE                                     42             27
                  vv
clus               LIFELONG NON-SMOKER
  OR5AS1 MUTATED                     0
  OR5AS1 WILD-TYPE                   8
D108V12, multiclass
                                             clus
vv                                            OR5AS1 MUTATED OR5AS1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              5               89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               42
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0                8
D108V13, continuous
                  vv
clus                R0  R1  R2  RX
  OR5AS1 MUTATED     7   0   0   0
  OR5AS1 WILD-TYPE 140   2   4  10
D108V14, multiclass
    clus
vv   OR5AS1 MUTATED OR5AS1 WILD-TYPE
  R0              7              140
  R1              0                2
  R2              0                4
  RX              0               10

Clustering(109) Variable = SCN7A MUTATION ANALYSIS
D109V1, survival
                 sevent
clus2              0  1
  SCN7A MUTATED    9  5
  SCN7A WILD-TYPE 88 65
  SCN7A MUTATED SCN7A WILD-TYPE 
             14             153 
  SCN7A MUTATED SCN7A WILD-TYPE 
              5              65 
$`SCN7A MUTATED`
TCGA-18-3409 TCGA-21-5787 TCGA-22-5478 TCGA-33-4566 TCGA-33-4583 TCGA-34-2608 
       79.46        10.82         0.79       173.79       141.34        32.84 
TCGA-39-5035 TCGA-43-6143 TCGA-51-4080 TCGA-60-2724 TCGA-66-2763 TCGA-66-2785 
       15.58         7.00         0.39         1.22         0.99         1.94 
TCGA-66-2788 TCGA-66-2795 
       22.98         4.01 

$`SCN7A WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       29.85        21.57         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       14.60        44.22        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4582 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-5231 
      103.53        14.07        19.76         2.63        61.61        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
       22.95         5.52         4.96         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        6.81         0.39         3.39        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       27.35        35.64         0.79        17.88        18.08        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
       18.84         8.48         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.95         0.59         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 
        3.16        26.07        24.10        22.78        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 
        0.99         0.99        20.98        25.02         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 
       19.00        12.03         3.98        12.00        24.95        25.97 
TCGA-66-2787 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       40.01         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  SCN7A MUTATED SCN7A WILD-TYPE 
           0.39            0.10 
  SCN7A MUTATED SCN7A WILD-TYPE 
         173.79          115.59 
  SCN7A MUTATED SCN7A WILD-TYPE 
           8.91           18.84 
[1] "0.4 - 173.8 (8.9)"  "0.1 - 115.6 (18.8)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
  "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
  "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
  "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
[1] "hr=" "1.6"
D109V2, continuous
D109V3, binary
                 cls
clus                0   1
  SCN7A MUTATED     2  12
  SCN7A WILD-TYPE  45 119
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SCN7A MUTATED      2   12
  SCN7A WILD-TYPE   45  119
        clus
vv       SCN7A MUTATED SCN7A WILD-TYPE
  FEMALE             2              45
  MALE              12             119
D109V4, continuous
[1] "Remove cluster labels:" "SCN7A MUTATED"         
clus
  SCN7A MUTATED SCN7A WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-22-4591      TCGA-22-4593 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-22-4595      TCGA-22-4599      TCGA-22-4601      TCGA-22-4604 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5480      TCGA-22-5482      TCGA-22-5485 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-34-5234 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-5819      TCGA-60-2698 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2725      TCGA-60-2726 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  SCN7A MUTATED                                       3
  SCN7A WILD-TYPE                                     2
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  SCN7A MUTATED                                        0
  SCN7A WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SCN7A MUTATED                                                            11
  SCN7A WILD-TYPE                                                         161
D109V5, multiclass
                                                             clus
vv                                                            SCN7A MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            11
                                                             clus
vv                                                            SCN7A WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             161
                 vv
clus               T1  T2  T3  T4
  SCN7A MUTATED     3   8   1   2
  SCN7A WILD-TYPE  33 108  13  10
D109V6, multiclass
    clus
vv   SCN7A MUTATED SCN7A WILD-TYPE
  T1             3              33
  T2             8             108
  T3             1              13
  T4             2              10
                 vv
clus               N0  N1  N2  N3
  SCN7A MUTATED    10   3   1   0
  SCN7A WILD-TYPE 107  36  16   5
D109V7, multiclass
    clus
vv   SCN7A MUTATED SCN7A WILD-TYPE
  N0            10             107
  N1             3              36
  N2             1              16
  N3             0               5
                 vv
clus               M0  M1  MX
  SCN7A MUTATED    13   0   0
  SCN7A WILD-TYPE 152   3   6
D109V8, multiclass
    clus
vv   SCN7A MUTATED SCN7A WILD-TYPE
  M0            13             152
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  SCN7A MUTATED    9  0      4
  SCN7A WILD-TYPE 88 38     37
D109V9, multiclass
        clus
vv       SCN7A MUTATED SCN7A WILD-TYPE
  I                  9              88
  II                 0              38
  III+IV             4              37
D109V10, binary
                 cls
clus                0   1
  SCN7A MUTATED     1  13
  SCN7A WILD-TYPE   3 161
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SCN7A MUTATED      1   13
  SCN7A WILD-TYPE    3  161
     clus
vv    SCN7A MUTATED SCN7A WILD-TYPE
  NO              1               3
  YES            13             161
D109V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  SCN7A MUTATED                                            11
  SCN7A WILD-TYPE                                          83
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  SCN7A MUTATED                                        2              1
  SCN7A WILD-TYPE                                     41             27
                 vv
clus              LIFELONG NON-SMOKER
  SCN7A MUTATED                     0
  SCN7A WILD-TYPE                   8
D109V12, multiclass
                                             clus
vv                                            SCN7A MUTATED SCN7A WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            11              83
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D109V13, continuous
                 vv
clus               R0  R1  R2  RX
  SCN7A MUTATED    13   0   0   1
  SCN7A WILD-TYPE 134   2   4   9
D109V14, multiclass
    clus
vv   SCN7A MUTATED SCN7A WILD-TYPE
  R0            13             134
  R1             0               2
  R2             0               4
  RX             1               9

Clustering(110) Variable = SNTG2 MUTATION ANALYSIS
D110V1, survival
                 sevent
clus2              0  1
  SNTG2 MUTATED    5  3
  SNTG2 WILD-TYPE 92 67
  SNTG2 MUTATED SNTG2 WILD-TYPE 
              8             159 
  SNTG2 MUTATED SNTG2 WILD-TYPE 
              3              67 
$`SNTG2 MUTATED`
TCGA-18-3411 TCGA-21-5782 TCGA-21-5787 TCGA-22-5473 TCGA-60-2722 TCGA-60-2723 
       46.52        31.63        10.82        63.52        24.10        22.78 
TCGA-66-2742 TCGA-85-6560 
       21.07         0.36 

$`SNTG2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 
       12.16         4.47        81.07        79.46         4.80        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5784 
       46.88        60.89        34.78        15.55         9.30        29.85 
TCGA-21-5786 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       21.57         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 
       19.30        11.77        31.69        64.90        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
        0.79        71.34        11.74        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       26.07         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6561 
        4.01        49.05         0.79 

  SNTG2 MUTATED SNTG2 WILD-TYPE 
           0.36            0.10 
  SNTG2 MUTATED SNTG2 WILD-TYPE 
          63.52          173.79 
  SNTG2 MUTATED SNTG2 WILD-TYPE 
          23.44           16.60 
[1] "0.4 - 63.5 (23.4)"  "0.1 - 173.8 (16.6)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"SNTG2 WILD-TYPE"   "SNTG2 MUTATED" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "SNTG2 MUTATED" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE"   "SNTG2 MUTATED" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE"   "SNTG2 MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"SNTG2 WILD-TYPE"   "SNTG2 MUTATED"   "SNTG2 MUTATED" "SNTG2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
  "SNTG2 MUTATED" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"SNTG2 WILD-TYPE"   "SNTG2 MUTATED" "SNTG2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"SNTG2 WILD-TYPE"   "SNTG2 MUTATED" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "SNTG2 MUTATED" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE"   "SNTG2 MUTATED" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE"   "SNTG2 MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"SNTG2 WILD-TYPE"   "SNTG2 MUTATED"   "SNTG2 MUTATED" "SNTG2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
  "SNTG2 MUTATED" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"SNTG2 WILD-TYPE"   "SNTG2 MUTATED" "SNTG2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"SNTG2 WILD-TYPE"   "SNTG2 MUTATED" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "SNTG2 MUTATED" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE"   "SNTG2 MUTATED" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE"   "SNTG2 MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"SNTG2 WILD-TYPE"   "SNTG2 MUTATED"   "SNTG2 MUTATED" "SNTG2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
  "SNTG2 MUTATED" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"SNTG2 WILD-TYPE"   "SNTG2 MUTATED" "SNTG2 WILD-TYPE" 
[1] "hr=" "1.2"
D110V2, continuous
D110V3, binary
                 cls
clus                0   1
  SNTG2 MUTATED     3   5
  SNTG2 WILD-TYPE  44 126
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SNTG2 MUTATED      3    5
  SNTG2 WILD-TYPE   44  126
        clus
vv       SNTG2 MUTATED SNTG2 WILD-TYPE
  FEMALE             3              44
  MALE               5             126
D110V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  SNTG2 MUTATED                                       0
  SNTG2 WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  SNTG2 MUTATED                                        0
  SNTG2 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SNTG2 MUTATED                                                             8
  SNTG2 WILD-TYPE                                                         164
D110V5, multiclass
                                                             clus
vv                                                            SNTG2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             8
                                                             clus
vv                                                            SNTG2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             164
                 vv
clus               T1  T2  T3  T4
  SNTG2 MUTATED     0   7   1   0
  SNTG2 WILD-TYPE  36 109  13  12
D110V6, multiclass
    clus
vv   SNTG2 MUTATED SNTG2 WILD-TYPE
  T1             0              36
  T2             7             109
  T3             1              13
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  SNTG2 MUTATED     3   3   2   0
  SNTG2 WILD-TYPE 114  36  15   5
D110V7, multiclass
    clus
vv   SNTG2 MUTATED SNTG2 WILD-TYPE
  N0             3             114
  N1             3              36
  N2             2              15
  N3             0               5
                 vv
clus               M0  M1  MX
  SNTG2 MUTATED     7   1   0
  SNTG2 WILD-TYPE 158   2   6
D110V8, multiclass
    clus
vv   SNTG2 MUTATED SNTG2 WILD-TYPE
  M0             7             158
  M1             1               2
  MX             0               6
                 vv
clus               I II III+IV
  SNTG2 MUTATED    3  1      4
  SNTG2 WILD-TYPE 94 37     37
D110V9, multiclass
        clus
vv       SNTG2 MUTATED SNTG2 WILD-TYPE
  I                  3              94
  II                 1              37
  III+IV             4              37
D110V10, binary
                 cls
clus                0   1
  SNTG2 MUTATED     1   7
  SNTG2 WILD-TYPE   3 167
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SNTG2 MUTATED      1    7
  SNTG2 WILD-TYPE    3  167
     clus
vv    SNTG2 MUTATED SNTG2 WILD-TYPE
  NO              1               3
  YES             7             167
D110V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  SNTG2 MUTATED                                             5
  SNTG2 WILD-TYPE                                          89
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  SNTG2 MUTATED                                        2              1
  SNTG2 WILD-TYPE                                     41             27
                 vv
clus              LIFELONG NON-SMOKER
  SNTG2 MUTATED                     0
  SNTG2 WILD-TYPE                   8
D110V12, multiclass
                                             clus
vv                                            SNTG2 MUTATED SNTG2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D110V13, continuous
                 vv
clus               R0  R1  R2  RX
  SNTG2 MUTATED     8   0   0   0
  SNTG2 WILD-TYPE 139   2   4  10
D110V14, multiclass
    clus
vv   SNTG2 MUTATED SNTG2 WILD-TYPE
  R0             8             139
  R1             0               2
  R2             0               4
  RX             0              10

Clustering(111) Variable = FRG2B MUTATION ANALYSIS
D111V1, survival
                 sevent
clus2              0  1
  FRG2B MUTATED    3  2
  FRG2B WILD-TYPE 94 68
  FRG2B MUTATED FRG2B WILD-TYPE 
              5             162 
  FRG2B MUTATED FRG2B WILD-TYPE 
              2              68 
$`FRG2B MUTATED`
TCGA-18-3416 TCGA-21-5782 TCGA-33-4532 TCGA-34-2596 TCGA-43-6143 
       28.34        31.63        82.98         2.63         7.00 

$`FRG2B WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        13.02        59.51        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5784 
       46.88        60.89        34.78        15.55         9.30        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       62.86        56.32        16.60       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2600 
      173.79       103.53       141.34        14.07        19.76        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6647 
       17.88        18.08        11.57        18.84         8.48         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  FRG2B MUTATED FRG2B WILD-TYPE 
           2.63            0.10 
  FRG2B MUTATED FRG2B WILD-TYPE 
          82.98          173.79 
  FRG2B MUTATED FRG2B WILD-TYPE 
          28.34           17.42 
[1] "2.6 - 83.0 (28.3)"  "0.1 - 173.8 (17.4)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE"   "FRG2B MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE"   "FRG2B MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE"   "FRG2B MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
[1] "hr=" "1.2"
D111V2, continuous
D111V3, binary
                 cls
clus                0   1
  FRG2B MUTATED     1   4
  FRG2B WILD-TYPE  46 127
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FRG2B MUTATED      1    4
  FRG2B WILD-TYPE   46  127
        clus
vv       FRG2B MUTATED FRG2B WILD-TYPE
  FEMALE             1              46
  MALE               4             127
D111V4, continuous
[1] "Remove cluster labels:" "FRG2B MUTATED"         
clus
  FRG2B MUTATED FRG2B WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5787      TCGA-22-4591      TCGA-22-4593 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-4595      TCGA-22-4599      TCGA-22-4601      TCGA-22-4604 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  FRG2B MUTATED                                       1
  FRG2B WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  FRG2B MUTATED                                        0
  FRG2B WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  FRG2B MUTATED                                                             4
  FRG2B WILD-TYPE                                                         168
D111V5, multiclass
                                                             clus
vv                                                            FRG2B MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             4
                                                             clus
vv                                                            FRG2B WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             168
                 vv
clus               T1  T2  T3  T4
  FRG2B MUTATED     0   5   0   0
  FRG2B WILD-TYPE  36 111  14  12
D111V6, multiclass
    clus
vv   FRG2B MUTATED FRG2B WILD-TYPE
  T1             0              36
  T2             5             111
  T3             0              14
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  FRG2B MUTATED     3   2   0   0
  FRG2B WILD-TYPE 114  37  17   5
D111V7, multiclass
    clus
vv   FRG2B MUTATED FRG2B WILD-TYPE
  N0             3             114
  N1             2              37
  N2             0              17
  N3             0               5
                 vv
clus               M0  M1  MX
  FRG2B MUTATED     5   0   0
  FRG2B WILD-TYPE 160   3   6
D111V8, multiclass
    clus
vv   FRG2B MUTATED FRG2B WILD-TYPE
  M0             5             160
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  FRG2B MUTATED    3  2      0
  FRG2B WILD-TYPE 94 36     41
D111V9, multiclass
        clus
vv       FRG2B MUTATED FRG2B WILD-TYPE
  I                  3              94
  II                 2              36
  III+IV             0              41
D111V10, binary
                 cls
clus                0   1
  FRG2B MUTATED     0   5
  FRG2B WILD-TYPE   4 169
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FRG2B MUTATED      0    5
  FRG2B WILD-TYPE    4  169
     clus
vv    FRG2B MUTATED FRG2B WILD-TYPE
  NO              0               4
  YES             5             169
D111V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  FRG2B MUTATED                                             2
  FRG2B WILD-TYPE                                          92
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  FRG2B MUTATED                                        2              1
  FRG2B WILD-TYPE                                     41             27
                 vv
clus              LIFELONG NON-SMOKER
  FRG2B MUTATED                     0
  FRG2B WILD-TYPE                   8
D111V12, multiclass
                                             clus
vv                                            FRG2B MUTATED FRG2B WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             2              92
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D111V13, continuous
[1] "Remove cluster labels:" "FRG2B MUTATED"         
clus
  FRG2B MUTATED FRG2B WILD-TYPE 
              2             103 
     TCGA-18-3406      TCGA-18-3417      TCGA-21-1078      TCGA-21-5786 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-21-5787      TCGA-22-0944      TCGA-22-1002      TCGA-22-1011 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-1012      TCGA-22-1016      TCGA-22-4591      TCGA-22-4593 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-4607      TCGA-22-4613      TCGA-22-5472      TCGA-22-5473 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5480      TCGA-22-5482      TCGA-22-5492 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-33-4533      TCGA-33-4547      TCGA-33-4582      TCGA-33-4583 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-33-4586      TCGA-34-5240      TCGA-34-5241      TCGA-37-4133 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-37-4135      TCGA-37-5819      TCGA-39-5021      TCGA-39-5022 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-39-5024      TCGA-39-5027      TCGA-39-5028      TCGA-39-5029 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-39-5030      TCGA-39-5031      TCGA-39-5035      TCGA-39-5036 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-39-5037      TCGA-39-5039      TCGA-43-2578      TCGA-43-3394 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-43-3920      TCGA-43-6647      TCGA-43-6770      TCGA-43-6771 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-56-1622      TCGA-56-5898      TCGA-56-6545      TCGA-56-6546 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2707      TCGA-60-2708      TCGA-60-2709      TCGA-60-2710 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2711      TCGA-60-2712      TCGA-60-2713      TCGA-60-2715 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2719      TCGA-60-2720      TCGA-60-2721      TCGA-60-2723 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2724      TCGA-60-2725      TCGA-60-2726      TCGA-63-6202 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2727      TCGA-66-2734      TCGA-66-2742      TCGA-66-2744 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2754      TCGA-66-2755      TCGA-66-2756      TCGA-66-2757 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2758      TCGA-66-2759      TCGA-66-2763      TCGA-66-2765 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2766      TCGA-66-2767      TCGA-66-2770      TCGA-66-2771 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2773      TCGA-66-2777      TCGA-66-2778      TCGA-66-2780 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2781      TCGA-66-2782      TCGA-66-2783      TCGA-66-2786 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
                 vv
clus               R0  R1  R2  RX
  FRG2B MUTATED     4   0   0   1
  FRG2B WILD-TYPE 143   2   4   9
D111V14, multiclass
    clus
vv   FRG2B MUTATED FRG2B WILD-TYPE
  R0             4             143
  R1             0               2
  R2             0               4
  RX             1               9

Clustering(112) Variable = OR8K3 MUTATION ANALYSIS
D112V1, survival
                 sevent
clus2              0  1
  OR8K3 MUTATED    5  2
  OR8K3 WILD-TYPE 92 68
  OR8K3 MUTATED OR8K3 WILD-TYPE 
              7             160 
  OR8K3 MUTATED OR8K3 WILD-TYPE 
              2              68 
$`OR8K3 MUTATED`
TCGA-18-3409 TCGA-21-1070 TCGA-22-5478 TCGA-37-5819 TCGA-39-5037 TCGA-66-2767 
       79.46       115.59         0.79         3.39         0.79         2.01 
TCGA-66-2793 
       10.06 

$`OR8K3 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 
        6.15         2.79        90.51         3.02        27.16        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       14.60        44.22        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5016 
        3.95         0.43         7.82         6.81         0.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 
       24.33         1.94        27.35        15.58        35.64        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 
       40.01        22.98         4.04         5.03        30.02        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  OR8K3 MUTATED OR8K3 WILD-TYPE 
           0.79            0.10 
  OR8K3 MUTATED OR8K3 WILD-TYPE 
         115.59          173.79 
  OR8K3 MUTATED OR8K3 WILD-TYPE 
           3.39           18.46 
[1] "0.8 - 115.6 (3.4)"  "0.1 - 173.8 (18.5)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE"   "OR8K3 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE"   "OR8K3 MUTATED" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE"   "OR8K3 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE"   "OR8K3 MUTATED" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE"   "OR8K3 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE"   "OR8K3 MUTATED" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
[1] "hr=" "1.6"
D112V2, continuous
D112V3, binary
                 cls
clus                0   1
  OR8K3 MUTATED     1   6
  OR8K3 WILD-TYPE  46 125
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8K3 MUTATED      1    6
  OR8K3 WILD-TYPE   46  125
        clus
vv       OR8K3 MUTATED OR8K3 WILD-TYPE
  FEMALE             1              46
  MALE               6             125
D112V4, continuous
[1] "Remove cluster labels:" "OR8K3 MUTATED"         
clus
  OR8K3 MUTATED OR8K3 WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-4604      TCGA-22-4613      TCGA-22-5472      TCGA-22-5473 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5480      TCGA-22-5482 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-60-2698 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2725      TCGA-60-2726 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR8K3 MUTATED                                       1
  OR8K3 WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR8K3 MUTATED                                        0
  OR8K3 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR8K3 MUTATED                                                             6
  OR8K3 WILD-TYPE                                                         166
D112V5, multiclass
                                                             clus
vv                                                            OR8K3 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             6
                                                             clus
vv                                                            OR8K3 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             166
                 vv
clus               T1  T2  T3  T4
  OR8K3 MUTATED     2   3   1   1
  OR8K3 WILD-TYPE  34 113  13  11
D112V6, multiclass
    clus
vv   OR8K3 MUTATED OR8K3 WILD-TYPE
  T1             2              34
  T2             3             113
  T3             1              13
  T4             1              11
                 vv
clus               N0  N1  N2  N3
  OR8K3 MUTATED     3   2   1   1
  OR8K3 WILD-TYPE 114  37  16   4
D112V7, multiclass
    clus
vv   OR8K3 MUTATED OR8K3 WILD-TYPE
  N0             3             114
  N1             2              37
  N2             1              16
  N3             1               4
                 vv
clus               M0  M1  MX
  OR8K3 MUTATED     7   0   0
  OR8K3 WILD-TYPE 158   3   6
D112V8, multiclass
    clus
vv   OR8K3 MUTATED OR8K3 WILD-TYPE
  M0             7             158
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  OR8K3 MUTATED    1  1      4
  OR8K3 WILD-TYPE 96 37     37
D112V9, multiclass
        clus
vv       OR8K3 MUTATED OR8K3 WILD-TYPE
  I                  1              96
  II                 1              37
  III+IV             4              37
D112V10, binary
                 cls
clus                0   1
  OR8K3 MUTATED     0   7
  OR8K3 WILD-TYPE   4 167
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8K3 MUTATED      0    7
  OR8K3 WILD-TYPE    4  167
     clus
vv    OR8K3 MUTATED OR8K3 WILD-TYPE
  NO              0               4
  YES             7             167
D112V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR8K3 MUTATED                                             4
  OR8K3 WILD-TYPE                                          90
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR8K3 MUTATED                                        2              1
  OR8K3 WILD-TYPE                                     41             27
                 vv
clus              LIFELONG NON-SMOKER
  OR8K3 MUTATED                     0
  OR8K3 WILD-TYPE                   8
D112V12, multiclass
                                             clus
vv                                            OR8K3 MUTATED OR8K3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D112V13, continuous
                 vv
clus               R0  R1  R2  RX
  OR8K3 MUTATED     7   0   0   0
  OR8K3 WILD-TYPE 140   2   4  10
D112V14, multiclass
    clus
vv   OR8K3 MUTATED OR8K3 WILD-TYPE
  R0             7             140
  R1             0               2
  R2             0               4
  RX             0              10

Clustering(113) Variable = OR5T1 MUTATION ANALYSIS
D113V1, survival
                 sevent
clus2              0  1
  OR5T1 MUTATED    7  1
  OR5T1 WILD-TYPE 90 69
  OR5T1 MUTATED OR5T1 WILD-TYPE 
              8             159 
  OR5T1 MUTATED OR5T1 WILD-TYPE 
              1              69 
$`OR5T1 MUTATED`
TCGA-18-3409 TCGA-18-3411 TCGA-21-5786 TCGA-33-4566 TCGA-66-2744 TCGA-66-2758 
       79.46        46.52        21.57       173.79         0.99        20.98 
TCGA-66-2768 TCGA-66-2787 
        2.01        40.01 

$`OR5T1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3412 TCGA-18-3414 
       12.16         4.47        81.07         4.80        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       16.96        43.10        21.07         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
        0.99        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 
        3.98        12.00        24.95         1.94        25.97        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  OR5T1 MUTATED OR5T1 WILD-TYPE 
           0.99            0.10 
  OR5T1 MUTATED OR5T1 WILD-TYPE 
         173.79          141.34 
  OR5T1 MUTATED OR5T1 WILD-TYPE 
          30.79           16.60 
[1] "1.0 - 173.8 (30.8)" "0.1 - 141.3 (16.6)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE"   "OR5T1 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
  "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE"   "OR5T1 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
  "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE"   "OR5T1 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
  "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
[1] "hr="     "7.6e+07"
D113V2, continuous
D113V3, binary
                 cls
clus                0   1
  OR5T1 MUTATED     1   9
  OR5T1 WILD-TYPE  46 122
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5T1 MUTATED      1    9
  OR5T1 WILD-TYPE   46  122
        clus
vv       OR5T1 MUTATED OR5T1 WILD-TYPE
  FEMALE             1              46
  MALE               9             122
D113V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR5T1 MUTATED                                       1
  OR5T1 WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR5T1 MUTATED                                        0
  OR5T1 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR5T1 MUTATED                                                             9
  OR5T1 WILD-TYPE                                                         163
D113V5, multiclass
                                                             clus
vv                                                            OR5T1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             9
                                                             clus
vv                                                            OR5T1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             163
                 vv
clus               T1  T2  T3  T4
  OR5T1 MUTATED     3   7   0   0
  OR5T1 WILD-TYPE  33 109  14  12
D113V6, multiclass
    clus
vv   OR5T1 MUTATED OR5T1 WILD-TYPE
  T1             3              33
  T2             7             109
  T3             0              14
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  OR5T1 MUTATED     7   2   1   0
  OR5T1 WILD-TYPE 110  37  16   5
D113V7, multiclass
    clus
vv   OR5T1 MUTATED OR5T1 WILD-TYPE
  N0             7             110
  N1             2              37
  N2             1              16
  N3             0               5
                 vv
clus               M0  M1  MX
  OR5T1 MUTATED    10   0   0
  OR5T1 WILD-TYPE 155   3   6
D113V8, multiclass
    clus
vv   OR5T1 MUTATED OR5T1 WILD-TYPE
  M0            10             155
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  OR5T1 MUTATED    6  2      1
  OR5T1 WILD-TYPE 91 36     40
D113V9, multiclass
        clus
vv       OR5T1 MUTATED OR5T1 WILD-TYPE
  I                  6              91
  II                 2              36
  III+IV             1              40
D113V10, binary
                 cls
clus                0   1
  OR5T1 MUTATED     0  10
  OR5T1 WILD-TYPE   4 164
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5T1 MUTATED      0   10
  OR5T1 WILD-TYPE    4  164
     clus
vv    OR5T1 MUTATED OR5T1 WILD-TYPE
  NO              0               4
  YES            10             164
D113V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR5T1 MUTATED                                             4
  OR5T1 WILD-TYPE                                          90
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR5T1 MUTATED                                        2              3
  OR5T1 WILD-TYPE                                     41             25
                 vv
clus              LIFELONG NON-SMOKER
  OR5T1 MUTATED                     1
  OR5T1 WILD-TYPE                   7
D113V12, multiclass
                                             clus
vv                                            OR5T1 MUTATED OR5T1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     1               7
D113V13, continuous
                 vv
clus               R0  R1  R2  RX
  OR5T1 MUTATED    10   0   0   0
  OR5T1 WILD-TYPE 137   2   4  10
D113V14, multiclass
    clus
vv   OR5T1 MUTATED OR5T1 WILD-TYPE
  R0            10             137
  R1             0               2
  R2             0               4
  RX             0              10

Clustering(114) Variable = FCAR MUTATION ANALYSIS
D114V1, survival
                sevent
clus2             0  1
  FCAR MUTATED    5  3
  FCAR WILD-TYPE 92 67
  FCAR MUTATED FCAR WILD-TYPE 
             8            159 
  FCAR MUTATED FCAR WILD-TYPE 
             3             67 
$`FCAR MUTATED`
TCGA-18-3409 TCGA-18-5592 TCGA-21-1077 TCGA-22-5482 TCGA-43-6143 TCGA-51-4081 
       79.46         3.02        34.78        11.74         7.00         2.07 
TCGA-60-2698 TCGA-66-2785 
       10.22         1.94 

$`FCAR WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        6.15         2.79        90.51        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 
       60.89        15.55         9.30        31.63        29.85        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       44.22         0.79        71.34        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6647 
       17.88        18.08        11.57        18.84         8.48         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 
        0.39        28.93         0.10         2.04         1.02        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
        3.98        12.00        24.95        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  FCAR MUTATED FCAR WILD-TYPE 
          1.94           0.10 
  FCAR MUTATED FCAR WILD-TYPE 
         79.46         173.79 
  FCAR MUTATED FCAR WILD-TYPE 
          8.61          18.84 
[1] "1.9 - 79.5 (8.6)"   "0.1 - 173.8 (18.8)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE"   "FCAR MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"FCAR WILD-TYPE"   "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE"   "FCAR MUTATED" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
  "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"FCAR WILD-TYPE"   "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"FCAR WILD-TYPE" "FCAR WILD-TYPE"   "FCAR MUTATED" "FCAR WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE"   "FCAR MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"FCAR WILD-TYPE"   "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE"   "FCAR MUTATED" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
  "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"FCAR WILD-TYPE"   "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"FCAR WILD-TYPE" "FCAR WILD-TYPE"   "FCAR MUTATED" "FCAR WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE"   "FCAR MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"FCAR WILD-TYPE"   "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE"   "FCAR MUTATED" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
  "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"FCAR WILD-TYPE"   "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"FCAR WILD-TYPE" "FCAR WILD-TYPE"   "FCAR MUTATED" "FCAR WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
[1] "hr=" "1.2"
D114V2, continuous
D114V3, binary
                cls
clus               0   1
  FCAR MUTATED     0   8
  FCAR WILD-TYPE  47 123
[1] "tbl2"
                cls
clus             [,1] [,2]
  FCAR MUTATED      0    8
  FCAR WILD-TYPE   47  123
        clus
vv       FCAR MUTATED FCAR WILD-TYPE
  FEMALE            0             47
  MALE              8            123
D114V4, continuous
[1] "Remove cluster labels:" "FCAR MUTATED"          
clus
  FCAR MUTATED FCAR WILD-TYPE 
             2             34 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3410     TCGA-18-3414 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-18-3419     TCGA-21-5782     TCGA-21-5787     TCGA-22-4591 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-4593     TCGA-22-4595     TCGA-22-4599     TCGA-22-4601 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-4604     TCGA-22-4613     TCGA-22-5472     TCGA-22-5473 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-5485     TCGA-22-5489     TCGA-22-5491     TCGA-22-5492 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-34-5234     TCGA-37-4133     TCGA-37-4135     TCGA-37-5819 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2712     TCGA-60-2715     TCGA-60-2725     TCGA-60-2726 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-70-6722     TCGA-70-6723 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" 
                vv
clus             LUNG BASALOID SQUAMOUS CELL CARCINOMA
  FCAR MUTATED                                       2
  FCAR WILD-TYPE                                     3
                vv
clus             LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  FCAR MUTATED                                        0
  FCAR WILD-TYPE                                      1
                vv
clus             LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  FCAR MUTATED                                                             6
  FCAR WILD-TYPE                                                         166
D114V5, multiclass
                                                             clus
vv                                                            FCAR MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            6
                                                             clus
vv                                                            FCAR WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            166
                vv
clus              T1  T2  T3  T4
  FCAR MUTATED     1   6   1   0
  FCAR WILD-TYPE  35 110  13  12
D114V6, multiclass
    clus
vv   FCAR MUTATED FCAR WILD-TYPE
  T1            1             35
  T2            6            110
  T3            1             13
  T4            0             12
                vv
clus              N0  N1  N2  N3
  FCAR MUTATED     5   3   0   0
  FCAR WILD-TYPE 112  36  17   5
D114V7, multiclass
    clus
vv   FCAR MUTATED FCAR WILD-TYPE
  N0            5            112
  N1            3             36
  N2            0             17
  N3            0              5
                vv
clus              M0  M1  MX
  FCAR MUTATED     8   0   0
  FCAR WILD-TYPE 157   3   6
D114V8, multiclass
    clus
vv   FCAR MUTATED FCAR WILD-TYPE
  M0            8            157
  M1            0              3
  MX            0              6
                vv
clus              I II III+IV
  FCAR MUTATED    3  4      0
  FCAR WILD-TYPE 94 34     41
D114V9, multiclass
        clus
vv       FCAR MUTATED FCAR WILD-TYPE
  I                 3             94
  II                4             34
  III+IV            0             41
D114V10, binary
                cls
clus               0   1
  FCAR MUTATED     0   8
  FCAR WILD-TYPE   4 166
[1] "tbl2"
                cls
clus             [,1] [,2]
  FCAR MUTATED      0    8
  FCAR WILD-TYPE    4  166
     clus
vv    FCAR MUTATED FCAR WILD-TYPE
  NO             0              4
  YES            8            166
D114V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  FCAR MUTATED                                             5
  FCAR WILD-TYPE                                          89
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  FCAR MUTATED                                        2              1
  FCAR WILD-TYPE                                     41             27
                vv
clus             LIFELONG NON-SMOKER
  FCAR MUTATED                     0
  FCAR WILD-TYPE                   8
D114V12, multiclass
                                             clus
vv                                            FCAR MUTATED FCAR WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            5             89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 2             41
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    0              8
D114V13, continuous
[1] "Remove cluster labels:" "FCAR MUTATED"          
clus
  FCAR MUTATED FCAR WILD-TYPE 
             2            103 
    TCGA-18-3406     TCGA-18-3417     TCGA-21-1078     TCGA-21-5782 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-21-5786     TCGA-21-5787     TCGA-22-0944     TCGA-22-1002 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-1011     TCGA-22-1012     TCGA-22-1016     TCGA-22-4591 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-4593     TCGA-22-4607     TCGA-22-4613     TCGA-22-5472 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-5473     TCGA-22-5474     TCGA-22-5480     TCGA-22-5492 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-33-4533     TCGA-33-4547     TCGA-33-4582     TCGA-33-4583 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-33-4586     TCGA-34-5240     TCGA-34-5241     TCGA-37-4133 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-37-4135     TCGA-37-5819     TCGA-39-5021     TCGA-39-5022 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-39-5024     TCGA-39-5027     TCGA-39-5028     TCGA-39-5029 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-39-5030     TCGA-39-5031     TCGA-39-5035     TCGA-39-5036 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-39-5037     TCGA-39-5039     TCGA-43-2578     TCGA-43-3394 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-43-3920     TCGA-43-6647     TCGA-43-6770     TCGA-43-6771 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-56-1622     TCGA-56-5898     TCGA-56-6545     TCGA-56-6546 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2707     TCGA-60-2708     TCGA-60-2709     TCGA-60-2710 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2711     TCGA-60-2712     TCGA-60-2713     TCGA-60-2715 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2719     TCGA-60-2720     TCGA-60-2721     TCGA-60-2723 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2724     TCGA-60-2725     TCGA-60-2726     TCGA-63-6202 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2727     TCGA-66-2734     TCGA-66-2742     TCGA-66-2744 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2754     TCGA-66-2755     TCGA-66-2756     TCGA-66-2757 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2758     TCGA-66-2759     TCGA-66-2763     TCGA-66-2765 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2766     TCGA-66-2767     TCGA-66-2770     TCGA-66-2771 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2773     TCGA-66-2777     TCGA-66-2778     TCGA-66-2780 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2781     TCGA-66-2782     TCGA-66-2783     TCGA-66-2786 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
                vv
clus              R0  R1  R2  RX
  FCAR MUTATED     6   0   0   2
  FCAR WILD-TYPE 141   2   4   8
D114V14, multiclass
    clus
vv   FCAR MUTATED FCAR WILD-TYPE
  R0            6            141
  R1            0              2
  R2            0              4
  RX            2              8

Clustering(115) Variable = OR2M7 MUTATION ANALYSIS
D115V1, survival
                 sevent
clus2              0  1
  OR2M7 MUTATED    6  2
  OR2M7 WILD-TYPE 91 68
  OR2M7 MUTATED OR2M7 WILD-TYPE 
              8             159 
  OR2M7 MUTATED OR2M7 WILD-TYPE 
              2              68 
$`OR2M7 MUTATED`
TCGA-18-3409 TCGA-22-5471 TCGA-22-5473 TCGA-33-4532 TCGA-34-2596 TCGA-39-5024 
       79.46        31.69        63.52        82.98         2.63        70.03 
TCGA-60-2720 TCGA-66-2786 
        3.16        25.97 

$`OR2M7 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5472 TCGA-22-5474 
       34.75        13.12        19.30        11.77        64.90        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       56.32        16.60       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2600 TCGA-34-2608 
      103.53       141.34        14.07        19.76        61.61        32.84 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         4.96         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       68.58        55.17        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
       27.35        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       47.87        35.34        30.61        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2787 TCGA-66-2788 
        3.98        12.00        24.95         1.94        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  OR2M7 MUTATED OR2M7 WILD-TYPE 
           2.63            0.10 
  OR2M7 MUTATED OR2M7 WILD-TYPE 
          82.98          173.79 
  OR2M7 MUTATED OR2M7 WILD-TYPE 
         47.605          16.600 
[1] "2.6 - 83.0 (47.6)"  "0.1 - 173.8 (16.6)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
[1] "hr=" "3"  
D115V2, continuous
D115V3, binary
                 cls
clus                0   1
  OR2M7 MUTATED     3   5
  OR2M7 WILD-TYPE  44 126
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M7 MUTATED      3    5
  OR2M7 WILD-TYPE   44  126
        clus
vv       OR2M7 MUTATED OR2M7 WILD-TYPE
  FEMALE             3              44
  MALE               5             126
D115V4, continuous
[1] "Remove cluster labels:" "OR2M7 MUTATED"         
clus
  OR2M7 MUTATED OR2M7 WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-4604      TCGA-22-4613      TCGA-22-5472      TCGA-22-5474 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR2M7 MUTATED                                       1
  OR2M7 WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR2M7 MUTATED                                        0
  OR2M7 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR2M7 MUTATED                                                             7
  OR2M7 WILD-TYPE                                                         165
D115V5, multiclass
                                                             clus
vv                                                            OR2M7 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             7
                                                             clus
vv                                                            OR2M7 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             165
                 vv
clus               T1  T2  T3  T4
  OR2M7 MUTATED     2   5   1   0
  OR2M7 WILD-TYPE  34 111  13  12
D115V6, multiclass
    clus
vv   OR2M7 MUTATED OR2M7 WILD-TYPE
  T1             2              34
  T2             5             111
  T3             1              13
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  OR2M7 MUTATED     6   1   1   0
  OR2M7 WILD-TYPE 111  38  16   5
D115V7, multiclass
    clus
vv   OR2M7 MUTATED OR2M7 WILD-TYPE
  N0             6             111
  N1             1              38
  N2             1              16
  N3             0               5
                 vv
clus               M0  M1  MX
  OR2M7 MUTATED     8   0   0
  OR2M7 WILD-TYPE 157   3   6
D115V8, multiclass
    clus
vv   OR2M7 MUTATED OR2M7 WILD-TYPE
  M0             8             157
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  OR2M7 MUTATED    5  1      1
  OR2M7 WILD-TYPE 92 37     40
D115V9, multiclass
        clus
vv       OR2M7 MUTATED OR2M7 WILD-TYPE
  I                  5              92
  II                 1              37
  III+IV             1              40
D115V10, binary
                 cls
clus                0   1
  OR2M7 MUTATED     1   7
  OR2M7 WILD-TYPE   3 167
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M7 MUTATED      1    7
  OR2M7 WILD-TYPE    3  167
     clus
vv    OR2M7 MUTATED OR2M7 WILD-TYPE
  NO              1               3
  YES             7             167
D115V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR2M7 MUTATED                                             4
  OR2M7 WILD-TYPE                                          90
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR2M7 MUTATED                                        3              1
  OR2M7 WILD-TYPE                                     40             27
                 vv
clus              LIFELONG NON-SMOKER
  OR2M7 MUTATED                     0
  OR2M7 WILD-TYPE                   8
D115V12, multiclass
                                             clus
vv                                            OR2M7 MUTATED OR2M7 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              40
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D115V13, continuous
                 vv
clus               R0  R1  R2  RX
  OR2M7 MUTATED     7   0   1   0
  OR2M7 WILD-TYPE 140   2   3  10
D115V14, multiclass
    clus
vv   OR2M7 MUTATED OR2M7 WILD-TYPE
  R0             7             140
  R1             0               2
  R2             1               3
  RX             0              10

Clustering(116) Variable = CPXCR1 MUTATION ANALYSIS
D116V1, survival
                  sevent
clus2               0  1
  CPXCR1 MUTATED    4  1
  CPXCR1 WILD-TYPE 93 69
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               5              162 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               1               69 
$`CPXCR1 MUTATED`
TCGA-18-5592 TCGA-37-3783 TCGA-60-2698 TCGA-60-2710 TCGA-60-2722 
        3.02         3.95        10.22        55.40        24.10 

$`CPXCR1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 
       43.76         6.15         2.79        90.51        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        5.52         4.96         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
        8.48         7.00         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 
        0.95         0.59         0.39         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        0.10         2.04         1.02        21.70        68.45        49.48 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       26.07        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
            3.02             0.10 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
           55.40           173.79 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
           10.22            17.98 
[1] "3.0 - 55.4 (10.2)"  "0.1 - 173.8 (18.0)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
[1] "hr=" "1.5"
D116V2, continuous
D116V3, binary
                  cls
clus                 0   1
  CPXCR1 MUTATED     1   5
  CPXCR1 WILD-TYPE  46 126
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CPXCR1 MUTATED      1    5
  CPXCR1 WILD-TYPE   46  126
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  FEMALE              1               46
  MALE                5              126
D116V4, continuous
[1] "Remove cluster labels:" "CPXCR1 MUTATED"        
clus
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               2               34 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4595       TCGA-22-4599       TCGA-22-4601 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-4604       TCGA-22-4613       TCGA-22-5472       TCGA-22-5473 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5492       TCGA-34-5234       TCGA-37-4133       TCGA-37-4135 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-37-5819       TCGA-60-2712       TCGA-60-2715       TCGA-60-2725 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2726       TCGA-70-6723 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  CPXCR1 MUTATED                                       0
  CPXCR1 WILD-TYPE                                     5
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  CPXCR1 MUTATED                                        0
  CPXCR1 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CPXCR1 MUTATED                                                             6
  CPXCR1 WILD-TYPE                                                         166
D116V5, multiclass
                                                             clus
vv                                                            CPXCR1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              6
                                                             clus
vv                                                            CPXCR1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              166
                  vv
clus                T1  T2  T3  T4
  CPXCR1 MUTATED     1   2   3   0
  CPXCR1 WILD-TYPE  35 114  11  12
D116V6, multiclass
    clus
vv   CPXCR1 MUTATED CPXCR1 WILD-TYPE
  T1              1               35
  T2              2              114
  T3              3               11
  T4              0               12
                  vv
clus                N0  N1  N2  N3
  CPXCR1 MUTATED     1   4   1   0
  CPXCR1 WILD-TYPE 116  35  16   5
D116V7, multiclass
    clus
vv   CPXCR1 MUTATED CPXCR1 WILD-TYPE
  N0              1              116
  N1              4               35
  N2              1               16
  N3              0                5
                  vv
clus                M0  M1  MX
  CPXCR1 MUTATED     6   0   0
  CPXCR1 WILD-TYPE 159   3   6
D116V8, multiclass
    clus
vv   CPXCR1 MUTATED CPXCR1 WILD-TYPE
  M0              6              159
  M1              0                3
  MX              0                6
                  vv
clus                I II III+IV
  CPXCR1 MUTATED    0  4      2
  CPXCR1 WILD-TYPE 97 34     39
D116V9, multiclass
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  I                   0               97
  II                  4               34
  III+IV              2               39
D116V10, binary
                  cls
clus                 0   1
  CPXCR1 MUTATED     0   6
  CPXCR1 WILD-TYPE   4 168
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CPXCR1 MUTATED      0    6
  CPXCR1 WILD-TYPE    4  168
     clus
vv    CPXCR1 MUTATED CPXCR1 WILD-TYPE
  NO               0                4
  YES              6              168
D116V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  CPXCR1 MUTATED                                             3
  CPXCR1 WILD-TYPE                                          91
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  CPXCR1 MUTATED                                        1              0
  CPXCR1 WILD-TYPE                                     42             28
                  vv
clus               LIFELONG NON-SMOKER
  CPXCR1 MUTATED                     1
  CPXCR1 WILD-TYPE                   7
D116V12, multiclass
                                             clus
vv                                            CPXCR1 MUTATED CPXCR1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              3               91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               42
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      1                7
D116V13, continuous
[1] "Remove cluster labels:" "CPXCR1 MUTATED"        
clus
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               1              104 
      TCGA-18-3406       TCGA-18-3417       TCGA-21-1078       TCGA-21-5782 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-21-5786       TCGA-21-5787       TCGA-22-0944       TCGA-22-1002 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-1011       TCGA-22-1012       TCGA-22-1016       TCGA-22-4591 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4607       TCGA-22-4613       TCGA-22-5472 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5473       TCGA-22-5474       TCGA-22-5480       TCGA-22-5482 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4533       TCGA-33-4547       TCGA-33-4582 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-33-4583       TCGA-33-4586       TCGA-34-5240       TCGA-34-5241 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-37-4133       TCGA-37-4135       TCGA-37-5819       TCGA-39-5021 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-6143       TCGA-43-6647 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-43-6770       TCGA-43-6771       TCGA-56-1622       TCGA-56-5898 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-56-6545       TCGA-56-6546       TCGA-60-2707       TCGA-60-2708 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2711       TCGA-60-2712       TCGA-60-2713 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2715       TCGA-60-2719       TCGA-60-2720       TCGA-60-2721 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2723       TCGA-60-2724       TCGA-60-2725       TCGA-60-2726 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-63-6202       TCGA-66-2727       TCGA-66-2734       TCGA-66-2742 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2744       TCGA-66-2754       TCGA-66-2755       TCGA-66-2756 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2757       TCGA-66-2758       TCGA-66-2759       TCGA-66-2763 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2765       TCGA-66-2766       TCGA-66-2767       TCGA-66-2770 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2771       TCGA-66-2773       TCGA-66-2777       TCGA-66-2778 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2780       TCGA-66-2781       TCGA-66-2782       TCGA-66-2783 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2786       TCGA-66-2787       TCGA-66-2788       TCGA-66-2789 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2791       TCGA-66-2792       TCGA-66-2793       TCGA-66-2794 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2795       TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
                  vv
clus                R0  R1  R2  RX
  CPXCR1 MUTATED     3   0   0   2
  CPXCR1 WILD-TYPE 144   2   4   8
D116V14, multiclass
    clus
vv   CPXCR1 MUTATED CPXCR1 WILD-TYPE
  R0              3              144
  R1              0                2
  R2              0                4
  RX              2                8

Clustering(117) Variable = COL6A6 MUTATION ANALYSIS
D117V1, survival
                  sevent
clus2               0  1
  COL6A6 MUTATED    9  9
  COL6A6 WILD-TYPE 88 61
  COL6A6 MUTATED COL6A6 WILD-TYPE 
              18              149 
  COL6A6 MUTATED COL6A6 WILD-TYPE 
               9               61 
$`COL6A6 MUTATED`
TCGA-18-3410 TCGA-22-1016 TCGA-22-4613 TCGA-33-4582 TCGA-34-2600 TCGA-34-5231 
        4.80        27.02        11.77       103.53        61.61        50.24 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5022 TCGA-39-5029 TCGA-43-2578 TCGA-43-3920 
        3.39        74.07        55.17        24.33        18.08        18.84 
TCGA-60-2698 TCGA-60-2711 TCGA-60-2722 TCGA-66-2763 TCGA-66-2782 TCGA-66-2786 
       10.22        29.19        24.10         0.99        12.00        25.97 

$`COL6A6 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       14.10        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       13.12        19.30        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2608 
      173.79       141.34        14.07        19.76         2.63        32.84 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
       22.95         5.52         4.96         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-39-5019 TCGA-39-5021 TCGA-39-5024 TCGA-39-5027 
        6.81         0.39        44.71        68.58        70.03        60.76 
TCGA-39-5028 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
        1.71         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-3394 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       17.88        11.57         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 
        2.07        28.93         0.10         2.04         1.02        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       68.45        49.48        55.40         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
       30.61         3.16        26.07        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 
        0.92         0.99         0.99        20.98        25.02         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 
        2.01        19.00        12.03         3.98        24.95         1.94 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  COL6A6 MUTATED COL6A6 WILD-TYPE 
            0.99             0.10 
  COL6A6 MUTATED COL6A6 WILD-TYPE 
          103.53           173.79 
  COL6A6 MUTATED COL6A6 WILD-TYPE 
          24.215           15.580 
[1] "1.0 - 103.5 (24.2)" "0.1 - 173.8 (15.6)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
  "COL6A6 MUTATED"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
  "COL6A6 MUTATED"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
  "COL6A6 MUTATED"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
[1] "hr=" "1"  
D117V2, continuous
D117V3, binary
                  cls
clus                 0   1
  COL6A6 MUTATED     6  13
  COL6A6 WILD-TYPE  41 118
[1] "tbl2"
                  cls
clus               [,1] [,2]
  COL6A6 MUTATED      6   13
  COL6A6 WILD-TYPE   41  118
        clus
vv       COL6A6 MUTATED COL6A6 WILD-TYPE
  FEMALE              6               41
  MALE               13              118
D117V4, continuous
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  COL6A6 MUTATED                                       1
  COL6A6 WILD-TYPE                                     4
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  COL6A6 MUTATED                                        0
  COL6A6 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  COL6A6 MUTATED                                                            18
  COL6A6 WILD-TYPE                                                         154
D117V5, multiclass
                                                             clus
vv                                                            COL6A6 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             18
                                                             clus
vv                                                            COL6A6 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              154
                  vv
clus                T1  T2  T3  T4
  COL6A6 MUTATED     7  10   2   0
  COL6A6 WILD-TYPE  29 106  12  12
D117V6, multiclass
    clus
vv   COL6A6 MUTATED COL6A6 WILD-TYPE
  T1              7               29
  T2             10              106
  T3              2               12
  T4              0               12
                  vv
clus                N0  N1  N2  N3
  COL6A6 MUTATED    14   3   2   0
  COL6A6 WILD-TYPE 103  36  15   5
D117V7, multiclass
    clus
vv   COL6A6 MUTATED COL6A6 WILD-TYPE
  N0             14              103
  N1              3               36
  N2              2               15
  N3              0                5
                  vv
clus                M0  M1  MX
  COL6A6 MUTATED    19   0   0
  COL6A6 WILD-TYPE 146   3   6
D117V8, multiclass
    clus
vv   COL6A6 MUTATED COL6A6 WILD-TYPE
  M0             19              146
  M1              0                3
  MX              0                6
                  vv
clus                I II III+IV
  COL6A6 MUTATED   11  5      3
  COL6A6 WILD-TYPE 86 33     38
D117V9, multiclass
        clus
vv       COL6A6 MUTATED COL6A6 WILD-TYPE
  I                  11               86
  II                  5               33
  III+IV              3               38
D117V10, binary
                  cls
clus                 0   1
  COL6A6 MUTATED     0  19
  COL6A6 WILD-TYPE   4 155
[1] "tbl2"
                  cls
clus               [,1] [,2]
  COL6A6 MUTATED      0   19
  COL6A6 WILD-TYPE    4  155
     clus
vv    COL6A6 MUTATED COL6A6 WILD-TYPE
  NO               0                4
  YES             19              155
D117V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  COL6A6 MUTATED                                            12
  COL6A6 WILD-TYPE                                          82
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  COL6A6 MUTATED                                        5              1
  COL6A6 WILD-TYPE                                     38             27
                  vv
clus               LIFELONG NON-SMOKER
  COL6A6 MUTATED                     1
  COL6A6 WILD-TYPE                   7
D117V12, multiclass
                                             clus
vv                                            COL6A6 MUTATED COL6A6 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             12               82
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   5               38
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      1                7
D117V13, continuous
                  vv
clus                R0  R1  R2  RX
  COL6A6 MUTATED    17   0   0   1
  COL6A6 WILD-TYPE 130   2   4   9
D117V14, multiclass
    clus
vv   COL6A6 MUTATED COL6A6 WILD-TYPE
  R0             17              130
  R1              0                2
  R2              0                4
  RX              1                9

Clustering(118) Variable = GP2 MUTATION ANALYSIS
D118V1, survival
               sevent
clus2            0  1
  GP2 MUTATED    5  4
  GP2 WILD-TYPE 92 66
  GP2 MUTATED GP2 WILD-TYPE 
            9           158 
  GP2 MUTATED GP2 WILD-TYPE 
            4            66 
$`GP2 MUTATED`
TCGA-22-4613 TCGA-34-5239 TCGA-43-5668 TCGA-43-6143 TCGA-51-4079 TCGA-60-2698 
       11.77        10.82         8.48         7.00         0.39        10.22 
TCGA-66-2742 TCGA-66-2789 TCGA-66-2800 
       21.07         4.04        49.05 

$`GP2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 
       38.17        34.75        13.12        19.30        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
       32.68         9.04         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
       22.98         5.03        30.02        10.06        54.08         4.01 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  GP2 MUTATED GP2 WILD-TYPE 
         0.39          0.10 
  GP2 MUTATED GP2 WILD-TYPE 
        49.05        173.79 
  GP2 MUTATED GP2 WILD-TYPE 
        10.22         18.92 
[1] "0.4 - 49.0 (10.2)"  "0.1 - 173.8 (18.9)"
   TCGA-18-3406    TCGA-18-3407    TCGA-18-3408    TCGA-18-3409    TCGA-18-3410 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-18-3411    TCGA-18-3412    TCGA-18-3414    TCGA-18-3415    TCGA-18-3416 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-18-3417    TCGA-18-3419    TCGA-18-3421    TCGA-18-4083    TCGA-18-4086 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-18-4721    TCGA-18-5592    TCGA-18-5595    TCGA-21-1070    TCGA-21-1071 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-21-1076    TCGA-21-1077    TCGA-21-1078    TCGA-21-1081    TCGA-21-5782 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-21-5784    TCGA-21-5786    TCGA-21-5787    TCGA-22-0944    TCGA-22-1002 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-1011    TCGA-22-1012    TCGA-22-1016    TCGA-22-4591    TCGA-22-4593 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-4595    TCGA-22-4599    TCGA-22-4601    TCGA-22-4604    TCGA-22-4607 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-4613    TCGA-22-5471    TCGA-22-5472    TCGA-22-5473    TCGA-22-5474 
  "GP2 MUTATED" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-5477    TCGA-22-5478    TCGA-22-5480    TCGA-22-5482    TCGA-22-5485 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-5489    TCGA-22-5491    TCGA-22-5492    TCGA-33-4532    TCGA-33-4533 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-33-4538    TCGA-33-4547    TCGA-33-4566    TCGA-33-4582    TCGA-33-4583 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-33-4586    TCGA-33-6737    TCGA-34-2596    TCGA-34-2600    TCGA-34-2608 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-34-5231    TCGA-34-5232    TCGA-34-5234    TCGA-34-5236    TCGA-34-5239 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" 
   TCGA-34-5240    TCGA-34-5241    TCGA-34-5927    TCGA-34-5928    TCGA-34-5929 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-37-3783    TCGA-37-3789    TCGA-37-4133    TCGA-37-4135    TCGA-37-4141 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-37-5819    TCGA-39-5016    TCGA-39-5019    TCGA-39-5021    TCGA-39-5022 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-39-5024    TCGA-39-5027    TCGA-39-5028    TCGA-39-5029    TCGA-39-5030 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-39-5031    TCGA-39-5035    TCGA-39-5036    TCGA-39-5037    TCGA-39-5039 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-43-2578    TCGA-43-3394    TCGA-43-3920    TCGA-43-5668    TCGA-43-6143 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED"   "GP2 MUTATED" 
   TCGA-43-6647    TCGA-43-6770    TCGA-43-6771    TCGA-46-3768    TCGA-46-6025 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-46-6026    TCGA-51-4079    TCGA-51-4080    TCGA-51-4081    TCGA-56-1622 
"GP2 WILD-TYPE"   "GP2 MUTATED" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-56-5897    TCGA-56-6545    TCGA-56-6546    TCGA-60-2698    TCGA-60-2707 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" "GP2 WILD-TYPE" 
   TCGA-60-2708    TCGA-60-2709    TCGA-60-2710    TCGA-60-2711    TCGA-60-2712 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-60-2713    TCGA-60-2715    TCGA-60-2719    TCGA-60-2720    TCGA-60-2721 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-60-2722    TCGA-60-2723    TCGA-60-2724    TCGA-60-2725    TCGA-60-2726 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2727    TCGA-66-2734    TCGA-66-2742    TCGA-66-2744    TCGA-66-2754 
"GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2755    TCGA-66-2756    TCGA-66-2757    TCGA-66-2758    TCGA-66-2759 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2763    TCGA-66-2765    TCGA-66-2766    TCGA-66-2767    TCGA-66-2768 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2770    TCGA-66-2771    TCGA-66-2773    TCGA-66-2777    TCGA-66-2778 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2780    TCGA-66-2781    TCGA-66-2782    TCGA-66-2783    TCGA-66-2785 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2786    TCGA-66-2787    TCGA-66-2788    TCGA-66-2789    TCGA-66-2791 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" "GP2 WILD-TYPE" 
   TCGA-66-2792    TCGA-66-2793    TCGA-66-2794    TCGA-66-2795    TCGA-66-2800 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" 
   TCGA-85-6560    TCGA-85-6561 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-18-3406    TCGA-18-3407    TCGA-18-3408    TCGA-18-3409    TCGA-18-3410 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-18-3411    TCGA-18-3412    TCGA-18-3414    TCGA-18-3415    TCGA-18-3416 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-18-3417    TCGA-18-3419    TCGA-18-3421    TCGA-18-4083    TCGA-18-4086 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-18-4721    TCGA-18-5592    TCGA-18-5595    TCGA-21-1070    TCGA-21-1071 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-21-1076    TCGA-21-1077    TCGA-21-1078    TCGA-21-1081    TCGA-21-5782 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-21-5784    TCGA-21-5786    TCGA-21-5787    TCGA-22-0944    TCGA-22-1002 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-1011    TCGA-22-1012    TCGA-22-1016    TCGA-22-4591    TCGA-22-4593 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-4595    TCGA-22-4599    TCGA-22-4601    TCGA-22-4604    TCGA-22-4607 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-4613    TCGA-22-5471    TCGA-22-5472    TCGA-22-5473    TCGA-22-5474 
  "GP2 MUTATED" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-5477    TCGA-22-5478    TCGA-22-5480    TCGA-22-5482    TCGA-22-5485 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-5489    TCGA-22-5491    TCGA-22-5492    TCGA-33-4532    TCGA-33-4533 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-33-4538    TCGA-33-4547    TCGA-33-4566    TCGA-33-4582    TCGA-33-4583 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-33-4586    TCGA-33-6737    TCGA-34-2596    TCGA-34-2600    TCGA-34-2608 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-34-5231    TCGA-34-5232    TCGA-34-5234    TCGA-34-5236    TCGA-34-5239 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" 
   TCGA-34-5240    TCGA-34-5241    TCGA-34-5927    TCGA-34-5928    TCGA-34-5929 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-37-3783    TCGA-37-3789    TCGA-37-4133    TCGA-37-4135    TCGA-37-4141 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-37-5819    TCGA-39-5016    TCGA-39-5019    TCGA-39-5021    TCGA-39-5022 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-39-5024    TCGA-39-5027    TCGA-39-5028    TCGA-39-5029    TCGA-39-5030 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-39-5031    TCGA-39-5035    TCGA-39-5036    TCGA-39-5037    TCGA-39-5039 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-43-2578    TCGA-43-3394    TCGA-43-3920    TCGA-43-5668    TCGA-43-6143 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED"   "GP2 MUTATED" 
   TCGA-43-6647    TCGA-43-6770    TCGA-43-6771    TCGA-46-3768    TCGA-46-6025 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-46-6026    TCGA-51-4079    TCGA-51-4080    TCGA-51-4081    TCGA-56-1622 
"GP2 WILD-TYPE"   "GP2 MUTATED" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-56-5897    TCGA-56-6545    TCGA-56-6546    TCGA-60-2698    TCGA-60-2707 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" "GP2 WILD-TYPE" 
   TCGA-60-2708    TCGA-60-2709    TCGA-60-2710    TCGA-60-2711    TCGA-60-2712 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-60-2713    TCGA-60-2715    TCGA-60-2719    TCGA-60-2720    TCGA-60-2721 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-60-2722    TCGA-60-2723    TCGA-60-2724    TCGA-60-2725    TCGA-60-2726 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2727    TCGA-66-2734    TCGA-66-2742    TCGA-66-2744    TCGA-66-2754 
"GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2755    TCGA-66-2756    TCGA-66-2757    TCGA-66-2758    TCGA-66-2759 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2763    TCGA-66-2765    TCGA-66-2766    TCGA-66-2767    TCGA-66-2768 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2770    TCGA-66-2771    TCGA-66-2773    TCGA-66-2777    TCGA-66-2778 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2780    TCGA-66-2781    TCGA-66-2782    TCGA-66-2783    TCGA-66-2785 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2786    TCGA-66-2787    TCGA-66-2788    TCGA-66-2789    TCGA-66-2791 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" "GP2 WILD-TYPE" 
   TCGA-66-2792    TCGA-66-2793    TCGA-66-2794    TCGA-66-2795    TCGA-66-2800 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" 
   TCGA-85-6560    TCGA-85-6561 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-18-3406    TCGA-18-3407    TCGA-18-3408    TCGA-18-3409    TCGA-18-3410 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-18-3411    TCGA-18-3412    TCGA-18-3414    TCGA-18-3415    TCGA-18-3416 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-18-3417    TCGA-18-3419    TCGA-18-3421    TCGA-18-4083    TCGA-18-4086 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-18-4721    TCGA-18-5592    TCGA-18-5595    TCGA-21-1070    TCGA-21-1071 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-21-1076    TCGA-21-1077    TCGA-21-1078    TCGA-21-1081    TCGA-21-5782 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-21-5784    TCGA-21-5786    TCGA-21-5787    TCGA-22-0944    TCGA-22-1002 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-1011    TCGA-22-1012    TCGA-22-1016    TCGA-22-4591    TCGA-22-4593 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-4595    TCGA-22-4599    TCGA-22-4601    TCGA-22-4604    TCGA-22-4607 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-4613    TCGA-22-5471    TCGA-22-5472    TCGA-22-5473    TCGA-22-5474 
  "GP2 MUTATED" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-5477    TCGA-22-5478    TCGA-22-5480    TCGA-22-5482    TCGA-22-5485 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-5489    TCGA-22-5491    TCGA-22-5492    TCGA-33-4532    TCGA-33-4533 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-33-4538    TCGA-33-4547    TCGA-33-4566    TCGA-33-4582    TCGA-33-4583 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-33-4586    TCGA-33-6737    TCGA-34-2596    TCGA-34-2600    TCGA-34-2608 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-34-5231    TCGA-34-5232    TCGA-34-5234    TCGA-34-5236    TCGA-34-5239 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" 
   TCGA-34-5240    TCGA-34-5241    TCGA-34-5927    TCGA-34-5928    TCGA-34-5929 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-37-3783    TCGA-37-3789    TCGA-37-4133    TCGA-37-4135    TCGA-37-4141 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-37-5819    TCGA-39-5016    TCGA-39-5019    TCGA-39-5021    TCGA-39-5022 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-39-5024    TCGA-39-5027    TCGA-39-5028    TCGA-39-5029    TCGA-39-5030 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-39-5031    TCGA-39-5035    TCGA-39-5036    TCGA-39-5037    TCGA-39-5039 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-43-2578    TCGA-43-3394    TCGA-43-3920    TCGA-43-5668    TCGA-43-6143 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED"   "GP2 MUTATED" 
   TCGA-43-6647    TCGA-43-6770    TCGA-43-6771    TCGA-46-3768    TCGA-46-6025 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-46-6026    TCGA-51-4079    TCGA-51-4080    TCGA-51-4081    TCGA-56-1622 
"GP2 WILD-TYPE"   "GP2 MUTATED" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-56-5897    TCGA-56-6545    TCGA-56-6546    TCGA-60-2698    TCGA-60-2707 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" "GP2 WILD-TYPE" 
   TCGA-60-2708    TCGA-60-2709    TCGA-60-2710    TCGA-60-2711    TCGA-60-2712 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-60-2713    TCGA-60-2715    TCGA-60-2719    TCGA-60-2720    TCGA-60-2721 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-60-2722    TCGA-60-2723    TCGA-60-2724    TCGA-60-2725    TCGA-60-2726 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2727    TCGA-66-2734    TCGA-66-2742    TCGA-66-2744    TCGA-66-2754 
"GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2755    TCGA-66-2756    TCGA-66-2757    TCGA-66-2758    TCGA-66-2759 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2763    TCGA-66-2765    TCGA-66-2766    TCGA-66-2767    TCGA-66-2768 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2770    TCGA-66-2771    TCGA-66-2773    TCGA-66-2777    TCGA-66-2778 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2780    TCGA-66-2781    TCGA-66-2782    TCGA-66-2783    TCGA-66-2785 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2786    TCGA-66-2787    TCGA-66-2788    TCGA-66-2789    TCGA-66-2791 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" "GP2 WILD-TYPE" 
   TCGA-66-2792    TCGA-66-2793    TCGA-66-2794    TCGA-66-2795    TCGA-66-2800 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" 
   TCGA-85-6560    TCGA-85-6561 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" 
[1] "hr=" "2"  
D118V2, continuous
D118V3, binary
               cls
clus              0   1
  GP2 MUTATED     2   9
  GP2 WILD-TYPE  45 122
[1] "tbl2"
               cls
clus            [,1] [,2]
  GP2 MUTATED      2    9
  GP2 WILD-TYPE   45  122
        clus
vv       GP2 MUTATED GP2 WILD-TYPE
  FEMALE           2            45
  MALE             9           122
D118V4, continuous
[1] "Remove cluster labels:" "GP2 MUTATED"           
clus
  GP2 MUTATED GP2 WILD-TYPE 
            2            34 
   TCGA-18-3406    TCGA-18-3407    TCGA-18-3410    TCGA-18-3414    TCGA-18-3419 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-21-5782    TCGA-21-5787    TCGA-22-4591    TCGA-22-4593    TCGA-22-4595 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-4599    TCGA-22-4601    TCGA-22-4604    TCGA-22-5472    TCGA-22-5473 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-5474    TCGA-22-5477    TCGA-22-5478    TCGA-22-5480    TCGA-22-5482 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-5485    TCGA-22-5489    TCGA-22-5491    TCGA-22-5492    TCGA-34-5234 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-37-4133    TCGA-37-4135    TCGA-37-5819    TCGA-60-2712    TCGA-60-2715 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-60-2725    TCGA-60-2726    TCGA-70-6722    TCGA-70-6723 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
               vv
clus            LUNG BASALOID SQUAMOUS CELL CARCINOMA
  GP2 MUTATED                                       1
  GP2 WILD-TYPE                                     4
               vv
clus            LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  GP2 MUTATED                                        0
  GP2 WILD-TYPE                                      1
               vv
clus            LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  GP2 MUTATED                                                            10
  GP2 WILD-TYPE                                                         162
D118V5, multiclass
                                                             clus
vv                                                            GP2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                 1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)          10
                                                             clus
vv                                                            GP2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)           162
               vv
clus             T1  T2  T3  T4
  GP2 MUTATED     4   4   0   3
  GP2 WILD-TYPE  32 112  14   9
D118V6, multiclass
    clus
vv   GP2 MUTATED GP2 WILD-TYPE
  T1           4            32
  T2           4           112
  T3           0            14
  T4           3             9
               vv
clus             N0  N1  N2  N3
  GP2 MUTATED     7   3   0   1
  GP2 WILD-TYPE 110  36  17   4
D118V7, multiclass
    clus
vv   GP2 MUTATED GP2 WILD-TYPE
  N0           7           110
  N1           3            36
  N2           0            17
  N3           1             4
               vv
clus             M0  M1  MX
  GP2 MUTATED     9   1   0
  GP2 WILD-TYPE 156   2   6
D118V8, multiclass
    clus
vv   GP2 MUTATED GP2 WILD-TYPE
  M0           9           156
  M1           1             2
  MX           0             6
               vv
clus             I II III+IV
  GP2 MUTATED    4  3      4
  GP2 WILD-TYPE 93 35     37
D118V9, multiclass
        clus
vv       GP2 MUTATED GP2 WILD-TYPE
  I                4            93
  II               3            35
  III+IV           4            37
D118V10, binary
               cls
clus              0   1
  GP2 MUTATED     0  11
  GP2 WILD-TYPE   4 163
[1] "tbl2"
               cls
clus            [,1] [,2]
  GP2 MUTATED      0   11
  GP2 WILD-TYPE    4  163
     clus
vv    GP2 MUTATED GP2 WILD-TYPE
  NO            0             4
  YES          11           163
D118V11, continuous
               vv
clus            CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  GP2 MUTATED                                             6
  GP2 WILD-TYPE                                          88
               vv
clus            CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  GP2 MUTATED                                        4              0
  GP2 WILD-TYPE                                     39             28
               vv
clus            LIFELONG NON-SMOKER
  GP2 MUTATED                     0
  GP2 WILD-TYPE                   8
D118V12, multiclass
                                             clus
vv                                            GP2 MUTATED GP2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           6            88
  CURRENT REFORMED SMOKER FOR > 15 YEARS                4            39
  CURRENT SMOKER                                        0            28
  LIFELONG NON-SMOKER                                   0             8
D118V13, continuous
               vv
clus             R0  R1  R2  RX
  GP2 MUTATED     6   1   0   2
  GP2 WILD-TYPE 141   1   4   8
D118V14, multiclass
    clus
vv   GP2 MUTATED GP2 WILD-TYPE
  R0           6           141
  R1           1             1
  R2           0             4
  RX           2             8

Clustering(119) Variable = CCDC85A MUTATION ANALYSIS
D119V1, survival
                   sevent
clus2                0  1
  CCDC85A MUTATED    8  1
  CCDC85A WILD-TYPE 89 69
  CCDC85A MUTATED CCDC85A WILD-TYPE 
                9               158 
  CCDC85A MUTATED CCDC85A WILD-TYPE 
                1                69 
$`CCDC85A MUTATED`
TCGA-18-3414 TCGA-21-1070 TCGA-33-4533 TCGA-33-4583 TCGA-39-5016 TCGA-39-5036 
       13.02       115.59       114.05       141.34        74.07        35.64 
TCGA-60-2719 TCGA-66-2763 TCGA-66-2785 
       30.61         0.99         1.94 

$`CCDC85A WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 
        6.15         2.79        90.51         3.02        27.16        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 
       62.86        56.32        16.60        82.98        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      173.79       103.53        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5019 
        0.43         7.82         6.81         0.39         3.39        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
        1.94        27.35        15.58         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       47.87        35.34         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
       25.02         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       12.00        24.95        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  CCDC85A MUTATED CCDC85A WILD-TYPE 
             0.99              0.10 
  CCDC85A MUTATED CCDC85A WILD-TYPE 
           141.34            173.79 
  CCDC85A MUTATED CCDC85A WILD-TYPE 
            35.64             16.78 
[1] "1.0 - 141.3 (35.6)" "0.1 - 173.8 (16.8)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
  "CCDC85A MUTATED" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "CCDC85A MUTATED" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
  "CCDC85A MUTATED" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "CCDC85A MUTATED" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
  "CCDC85A MUTATED" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "CCDC85A MUTATED" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
[1] "hr=" "9.4"
D119V2, continuous
D119V3, binary
                   cls
clus                  0   1
  CCDC85A MUTATED     4   5
  CCDC85A WILD-TYPE  43 126
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CCDC85A MUTATED      4    5
  CCDC85A WILD-TYPE   43  126
        clus
vv       CCDC85A MUTATED CCDC85A WILD-TYPE
  FEMALE               4                43
  MALE                 5               126
D119V4, continuous
[1] "Remove cluster labels:" "CCDC85A MUTATED"       
clus
  CCDC85A MUTATED CCDC85A WILD-TYPE 
                1                35 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3410        TCGA-18-3419 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5787        TCGA-22-4591        TCGA-22-4593 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5480        TCGA-22-5482 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-34-5234        TCGA-37-4133        TCGA-37-4135        TCGA-37-5819 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2712        TCGA-60-2715        TCGA-60-2725 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-60-2726        TCGA-70-6722        TCGA-70-6723 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  CCDC85A MUTATED                                       1
  CCDC85A WILD-TYPE                                     4
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  CCDC85A MUTATED                                        0
  CCDC85A WILD-TYPE                                      1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CCDC85A MUTATED                                                             8
  CCDC85A WILD-TYPE                                                         164
D119V5, multiclass
                                                             clus
vv                                                            CCDC85A MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               8
                                                             clus
vv                                                            CCDC85A WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               164
                   vv
clus                 T1  T2  T3  T4
  CCDC85A MUTATED     2   5   1   1
  CCDC85A WILD-TYPE  34 111  13  11
D119V6, multiclass
    clus
vv   CCDC85A MUTATED CCDC85A WILD-TYPE
  T1               2                34
  T2               5               111
  T3               1                13
  T4               1                11
                   vv
clus                 N0  N1  N2  N3
  CCDC85A MUTATED     7   2   0   0
  CCDC85A WILD-TYPE 110  37  17   5
D119V7, multiclass
    clus
vv   CCDC85A MUTATED CCDC85A WILD-TYPE
  N0               7               110
  N1               2                37
  N2               0                17
  N3               0                 5
                   vv
clus                 M0  M1  MX
  CCDC85A MUTATED     8   1   0
  CCDC85A WILD-TYPE 157   2   6
D119V8, multiclass
    clus
vv   CCDC85A MUTATED CCDC85A WILD-TYPE
  M0               8               157
  M1               1                 2
  MX               0                 6
                   vv
clus                 I II III+IV
  CCDC85A MUTATED    6  1      2
  CCDC85A WILD-TYPE 91 37     39
D119V9, multiclass
        clus
vv       CCDC85A MUTATED CCDC85A WILD-TYPE
  I                    6                91
  II                   1                37
  III+IV               2                39
D119V10, binary
                   cls
clus                  0   1
  CCDC85A MUTATED     0   9
  CCDC85A WILD-TYPE   4 165
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CCDC85A MUTATED      0    9
  CCDC85A WILD-TYPE    4  165
     clus
vv    CCDC85A MUTATED CCDC85A WILD-TYPE
  NO                0                 4
  YES               9               165
D119V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  CCDC85A MUTATED                                             8
  CCDC85A WILD-TYPE                                          86
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  CCDC85A MUTATED                                        1              0
  CCDC85A WILD-TYPE                                     42             28
                   vv
clus                LIFELONG NON-SMOKER
  CCDC85A MUTATED                     0
  CCDC85A WILD-TYPE                   8
D119V12, multiclass
                                             clus
vv                                            CCDC85A MUTATED CCDC85A WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               8                86
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                42
  CURRENT SMOKER                                            0                28
  LIFELONG NON-SMOKER                                       0                 8
D119V13, continuous
                   vv
clus                 R0  R1  R2  RX
  CCDC85A MUTATED     9   0   0   0
  CCDC85A WILD-TYPE 138   2   4  10
D119V14, multiclass
    clus
vv   CCDC85A MUTATED CCDC85A WILD-TYPE
  R0               9               138
  R1               0                 2
  R2               0                 4
  RX               0                10

Clustering(120) Variable = OR2T3 MUTATION ANALYSIS
D120V1, survival
                 sevent
clus2              0  1
  OR2T3 MUTATED    3  2
  OR2T3 WILD-TYPE 94 68
  OR2T3 MUTATED OR2T3 WILD-TYPE 
              5             162 
  OR2T3 MUTATED OR2T3 WILD-TYPE 
              2              68 
$`OR2T3 MUTATED`
TCGA-33-4566 TCGA-43-3920 TCGA-43-6143 TCGA-66-2773 TCGA-66-2787 
      173.79        18.84         7.00         3.02        40.01 

$`OR2T3 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 
       38.17        34.75        13.12        19.30        11.77        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 
       64.90        63.52        14.60        44.22         0.79        71.34 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       11.74        30.08        62.86        56.32        16.60        82.98 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
      114.05        97.94        43.10       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 
        5.52         4.96         3.95         0.43         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        0.39         3.39        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.76         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       15.58        35.64         0.79        17.88        18.08        11.57 
TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        8.48         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
        1.94        25.97        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  OR2T3 MUTATED OR2T3 WILD-TYPE 
           3.02            0.10 
  OR2T3 MUTATED OR2T3 WILD-TYPE 
         173.79          141.34 
  OR2T3 MUTATED OR2T3 WILD-TYPE 
          18.84           17.42 
[1] "3.0 - 173.8 (18.8)" "0.1 - 141.3 (17.4)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2T3 WILD-TYPE"   "OR2T3 MUTATED" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2T3 WILD-TYPE"   "OR2T3 MUTATED" "OR2T3 WILD-TYPE"   "OR2T3 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE"   "OR2T3 MUTATED" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "OR2T3 MUTATED" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2T3 WILD-TYPE"   "OR2T3 MUTATED" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2T3 WILD-TYPE"   "OR2T3 MUTATED" "OR2T3 WILD-TYPE"   "OR2T3 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE"   "OR2T3 MUTATED" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "OR2T3 MUTATED" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2T3 WILD-TYPE"   "OR2T3 MUTATED" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2T3 WILD-TYPE"   "OR2T3 MUTATED" "OR2T3 WILD-TYPE"   "OR2T3 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE"   "OR2T3 MUTATED" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "OR2T3 MUTATED" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
[1] "hr=" "2.9"
D120V2, continuous
D120V3, binary
                 cls
clus                0   1
  OR2T3 MUTATED     0   6
  OR2T3 WILD-TYPE  47 125
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2T3 MUTATED      0    6
  OR2T3 WILD-TYPE   47  125
        clus
vv       OR2T3 MUTATED OR2T3 WILD-TYPE
  FEMALE             0              47
  MALE               6             125
D120V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR2T3 MUTATED                                       1
  OR2T3 WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR2T3 MUTATED                                        0
  OR2T3 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR2T3 MUTATED                                                             5
  OR2T3 WILD-TYPE                                                         167
D120V5, multiclass
                                                             clus
vv                                                            OR2T3 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             5
                                                             clus
vv                                                            OR2T3 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             167
                 vv
clus               T1  T2  T3  T4
  OR2T3 MUTATED     1   4   0   1
  OR2T3 WILD-TYPE  35 112  14  11
D120V6, multiclass
    clus
vv   OR2T3 MUTATED OR2T3 WILD-TYPE
  T1             1              35
  T2             4             112
  T3             0              14
  T4             1              11
                 vv
clus               N0  N1  N2  N3
  OR2T3 MUTATED     6   0   0   0
  OR2T3 WILD-TYPE 111  39  17   5
D120V7, multiclass
    clus
vv   OR2T3 MUTATED OR2T3 WILD-TYPE
  N0             6             111
  N1             0              39
  N2             0              17
  N3             0               5
                 vv
clus               M0  M1  MX
  OR2T3 MUTATED     6   0   0
  OR2T3 WILD-TYPE 159   3   6
D120V8, multiclass
    clus
vv   OR2T3 MUTATED OR2T3 WILD-TYPE
  M0             6             159
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  OR2T3 MUTATED    5  1      0
  OR2T3 WILD-TYPE 92 37     41
D120V9, multiclass
        clus
vv       OR2T3 MUTATED OR2T3 WILD-TYPE
  I                  5              92
  II                 1              37
  III+IV             0              41
D120V10, binary
                 cls
clus                0   1
  OR2T3 MUTATED     0   6
  OR2T3 WILD-TYPE   4 168
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2T3 MUTATED      0    6
  OR2T3 WILD-TYPE    4  168
     clus
vv    OR2T3 MUTATED OR2T3 WILD-TYPE
  NO              0               4
  YES             6             168
D120V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR2T3 MUTATED                                             4
  OR2T3 WILD-TYPE                                          90
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR2T3 MUTATED                                        1              1
  OR2T3 WILD-TYPE                                     42             27
                 vv
clus              LIFELONG NON-SMOKER
  OR2T3 MUTATED                     0
  OR2T3 WILD-TYPE                   8
D120V12, multiclass
                                             clus
vv                                            OR2T3 MUTATED OR2T3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              42
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D120V13, continuous
                 vv
clus               R0  R1  R2  RX
  OR2T3 MUTATED     4   1   0   1
  OR2T3 WILD-TYPE 143   1   4   9
D120V14, multiclass
    clus
vv   OR2T3 MUTATED OR2T3 WILD-TYPE
  R0             4             143
  R1             1               1
  R2             0               4
  RX             1               9

Clustering(121) Variable = EIF3E MUTATION ANALYSIS
D121V1, survival
                 sevent
clus2              0  1
  EIF3E MUTATED    2  3
  EIF3E WILD-TYPE 95 67
  EIF3E MUTATED EIF3E WILD-TYPE 
              5             162 
  EIF3E MUTATED EIF3E WILD-TYPE 
              3              67 
$`EIF3E MUTATED`
TCGA-18-3410 TCGA-18-3417 TCGA-22-4599 TCGA-34-5239 TCGA-51-4079 
        4.80        24.92        38.17        10.82         0.39 

$`EIF3E WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        28.34         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 
       27.02        20.45        35.08        24.13        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  EIF3E MUTATED EIF3E WILD-TYPE 
           0.39            0.10 
  EIF3E MUTATED EIF3E WILD-TYPE 
          38.17          173.79 
  EIF3E MUTATED EIF3E WILD-TYPE 
          10.82           17.98 
[1] "0.4 - 38.2 (10.8)"  "0.1 - 173.8 (18.0)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
  "EIF3E MUTATED" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE"   "EIF3E MUTATED" "EIF3E WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "EIF3E MUTATED" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"EIF3E WILD-TYPE"   "EIF3E MUTATED" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE"   "EIF3E MUTATED" "EIF3E WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
  "EIF3E MUTATED" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE"   "EIF3E MUTATED" "EIF3E WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "EIF3E MUTATED" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"EIF3E WILD-TYPE"   "EIF3E MUTATED" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE"   "EIF3E MUTATED" "EIF3E WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
  "EIF3E MUTATED" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE"   "EIF3E MUTATED" "EIF3E WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "EIF3E MUTATED" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"EIF3E WILD-TYPE"   "EIF3E MUTATED" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE"   "EIF3E MUTATED" "EIF3E WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
[1] "hr=" "2.2"
D121V2, continuous
D121V3, binary
                 cls
clus                0   1
  EIF3E MUTATED     2   3
  EIF3E WILD-TYPE  45 128
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EIF3E MUTATED      2    3
  EIF3E WILD-TYPE   45  128
        clus
vv       EIF3E MUTATED EIF3E WILD-TYPE
  FEMALE             2              45
  MALE               3             128
D121V4, continuous
[1] "Remove cluster labels:" "EIF3E MUTATED"         
clus
  EIF3E MUTATED EIF3E WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3414      TCGA-18-3419 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5787      TCGA-22-4591      TCGA-22-4593 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-4595      TCGA-22-4601      TCGA-22-4604      TCGA-22-4613 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-5472      TCGA-22-5473      TCGA-22-5474      TCGA-22-5477 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-5478      TCGA-22-5480      TCGA-22-5482      TCGA-22-5485 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-34-5234 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-5819      TCGA-60-2698 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2725      TCGA-60-2726 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  EIF3E MUTATED                                       0
  EIF3E WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  EIF3E MUTATED                                        0
  EIF3E WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  EIF3E MUTATED                                                             5
  EIF3E WILD-TYPE                                                         167
D121V5, multiclass
                                                             clus
vv                                                            EIF3E MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             5
                                                             clus
vv                                                            EIF3E WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             167
                 vv
clus               T1  T2  T3  T4
  EIF3E MUTATED     0   3   1   1
  EIF3E WILD-TYPE  36 113  13  11
D121V6, multiclass
    clus
vv   EIF3E MUTATED EIF3E WILD-TYPE
  T1             0              36
  T2             3             113
  T3             1              13
  T4             1              11
                 vv
clus               N0  N1  N2  N3
  EIF3E MUTATED     4   1   0   0
  EIF3E WILD-TYPE 113  38  17   5
D121V7, multiclass
    clus
vv   EIF3E MUTATED EIF3E WILD-TYPE
  N0             4             113
  N1             1              38
  N2             0              17
  N3             0               5
                 vv
clus               M0  M1  MX
  EIF3E MUTATED     3   1   0
  EIF3E WILD-TYPE 162   2   6
D121V8, multiclass
    clus
vv   EIF3E MUTATED EIF3E WILD-TYPE
  M0             3             162
  M1             1               2
  MX             0               6
                 vv
clus               I II III+IV
  EIF3E MUTATED    2  0      3
  EIF3E WILD-TYPE 95 38     38
D121V9, multiclass
        clus
vv       EIF3E MUTATED EIF3E WILD-TYPE
  I                  2              95
  II                 0              38
  III+IV             3              38
D121V10, binary
                 cls
clus                0   1
  EIF3E MUTATED     0   5
  EIF3E WILD-TYPE   4 169
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EIF3E MUTATED      0    5
  EIF3E WILD-TYPE    4  169
     clus
vv    EIF3E MUTATED EIF3E WILD-TYPE
  NO              0               4
  YES             5             169
D121V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  EIF3E MUTATED                                             1
  EIF3E WILD-TYPE                                          93
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  EIF3E MUTATED                                        2              1
  EIF3E WILD-TYPE                                     41             27
                 vv
clus              LIFELONG NON-SMOKER
  EIF3E MUTATED                     0
  EIF3E WILD-TYPE                   8
D121V12, multiclass
                                             clus
vv                                            EIF3E MUTATED EIF3E WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             1              93
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D121V13, continuous
[1] "Remove cluster labels:" "EIF3E MUTATED"         
clus
  EIF3E MUTATED EIF3E WILD-TYPE 
              1             104 
     TCGA-18-3406      TCGA-21-1078      TCGA-21-5782      TCGA-21-5786 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-21-5787      TCGA-22-0944      TCGA-22-1002      TCGA-22-1011 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-1012      TCGA-22-1016      TCGA-22-4591      TCGA-22-4593 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-4607      TCGA-22-4613      TCGA-22-5472      TCGA-22-5473 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5480      TCGA-22-5482      TCGA-22-5492 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-33-4533      TCGA-33-4547      TCGA-33-4582      TCGA-33-4583 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-33-4586      TCGA-34-5240      TCGA-34-5241      TCGA-37-4133 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-37-4135      TCGA-37-5819      TCGA-39-5021      TCGA-39-5022 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-39-5024      TCGA-39-5027      TCGA-39-5028      TCGA-39-5029 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-39-5030      TCGA-39-5031      TCGA-39-5035      TCGA-39-5036 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-39-5037      TCGA-39-5039      TCGA-43-2578      TCGA-43-3394 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-43-3920      TCGA-43-6143      TCGA-43-6647      TCGA-43-6770 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-43-6771      TCGA-56-1622      TCGA-56-5898      TCGA-56-6545 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2707      TCGA-60-2708      TCGA-60-2709 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2710      TCGA-60-2711      TCGA-60-2712      TCGA-60-2713 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2715      TCGA-60-2719      TCGA-60-2720      TCGA-60-2721 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2723      TCGA-60-2724      TCGA-60-2725      TCGA-60-2726 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-63-6202      TCGA-66-2727      TCGA-66-2734      TCGA-66-2742 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2744      TCGA-66-2754      TCGA-66-2755      TCGA-66-2756 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2757      TCGA-66-2758      TCGA-66-2759      TCGA-66-2763 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2765      TCGA-66-2766      TCGA-66-2767      TCGA-66-2770 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2771      TCGA-66-2773      TCGA-66-2777      TCGA-66-2778 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2780      TCGA-66-2781      TCGA-66-2782      TCGA-66-2783 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2786      TCGA-66-2787      TCGA-66-2788      TCGA-66-2789 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2791      TCGA-66-2792      TCGA-66-2793      TCGA-66-2794 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2795      TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
                 vv
clus               R0  R1  R2  RX
  EIF3E MUTATED     4   0   0   0
  EIF3E WILD-TYPE 143   2   4  10
D121V14, multiclass
    clus
vv   EIF3E MUTATED EIF3E WILD-TYPE
  R0             4             143
  R1             0               2
  R2             0               4
  RX             0              10

Clustering(122) Variable = PRR23B MUTATION ANALYSIS
D122V1, survival
                  sevent
clus2               0  1
  PRR23B MUTATED    6  2
  PRR23B WILD-TYPE 91 68
  PRR23B MUTATED PRR23B WILD-TYPE 
               8              159 
  PRR23B MUTATED PRR23B WILD-TYPE 
               2               68 
$`PRR23B MUTATED`
TCGA-21-5782 TCGA-33-4533 TCGA-33-4583 TCGA-39-5019 TCGA-60-2723 TCGA-66-2755 
       31.63       114.05       141.34        44.71        22.78         0.92 
TCGA-66-2763 TCGA-66-2782 
        0.99        12.00 

$`PRR23B WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4538 
       30.08        62.86        56.32        16.60        82.98        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
       43.10       173.79       103.53        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       74.07        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       26.07        24.10         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2756 TCGA-66-2757 
       43.10        21.07         0.99         2.01         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       20.98        25.02         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
        3.98        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  PRR23B MUTATED PRR23B WILD-TYPE 
            0.92             0.10 
  PRR23B MUTATED PRR23B WILD-TYPE 
          141.34           173.79 
  PRR23B MUTATED PRR23B WILD-TYPE 
          27.205           16.960 
[1] "0.9 - 141.3 (27.2)" "0.1 - 173.8 (17.0)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
  "PRR23B MUTATED" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE"   "PRR23B MUTATED" "PRR23B WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE"   "PRR23B MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE"   "PRR23B MUTATED" "PRR23B WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE"   "PRR23B MUTATED" "PRR23B WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE"   "PRR23B MUTATED" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
  "PRR23B MUTATED" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
  "PRR23B MUTATED" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
  "PRR23B MUTATED" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE"   "PRR23B MUTATED" "PRR23B WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE"   "PRR23B MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE"   "PRR23B MUTATED" "PRR23B WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE"   "PRR23B MUTATED" "PRR23B WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE"   "PRR23B MUTATED" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
  "PRR23B MUTATED" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
  "PRR23B MUTATED" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
  "PRR23B MUTATED" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE"   "PRR23B MUTATED" "PRR23B WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE"   "PRR23B MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE"   "PRR23B MUTATED" "PRR23B WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE"   "PRR23B MUTATED" "PRR23B WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE"   "PRR23B MUTATED" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
  "PRR23B MUTATED" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
  "PRR23B MUTATED" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
[1] "hr=" "2.8"
D122V2, continuous
D122V3, binary
                  cls
clus                 0   1
  PRR23B MUTATED     4   5
  PRR23B WILD-TYPE  43 126
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PRR23B MUTATED      4    5
  PRR23B WILD-TYPE   43  126
        clus
vv       PRR23B MUTATED PRR23B WILD-TYPE
  FEMALE              4               43
  MALE                5              126
D122V4, continuous
[1] "Remove cluster labels:" "PRR23B MUTATED"        
clus
  PRR23B MUTATED PRR23B WILD-TYPE 
               1               35 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5787       TCGA-22-4591       TCGA-22-4593 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-4595       TCGA-22-4599       TCGA-22-4601       TCGA-22-4604 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5472       TCGA-22-5473       TCGA-22-5474 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5482 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-34-5234       TCGA-37-4133       TCGA-37-4135       TCGA-37-5819 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-60-2698       TCGA-60-2712       TCGA-60-2715       TCGA-60-2725 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-60-2726       TCGA-70-6722       TCGA-70-6723 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  PRR23B MUTATED                                       0
  PRR23B WILD-TYPE                                     5
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  PRR23B MUTATED                                        0
  PRR23B WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PRR23B MUTATED                                                             9
  PRR23B WILD-TYPE                                                         163
D122V5, multiclass
                                                             clus
vv                                                            PRR23B MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              9
                                                             clus
vv                                                            PRR23B WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              163
                  vv
clus                T1  T2  T3  T4
  PRR23B MUTATED     1   6   1   1
  PRR23B WILD-TYPE  35 110  13  11
D122V6, multiclass
    clus
vv   PRR23B MUTATED PRR23B WILD-TYPE
  T1              1               35
  T2              6              110
  T3              1               13
  T4              1               11
                  vv
clus                N0  N1  N2  N3
  PRR23B MUTATED     9   0   0   0
  PRR23B WILD-TYPE 108  39  17   5
D122V7, multiclass
    clus
vv   PRR23B MUTATED PRR23B WILD-TYPE
  N0              9              108
  N1              0               39
  N2              0               17
  N3              0                5
                  vv
clus                M0  M1  MX
  PRR23B MUTATED     9   0   0
  PRR23B WILD-TYPE 156   3   6
D122V8, multiclass
    clus
vv   PRR23B MUTATED PRR23B WILD-TYPE
  M0              9              156
  M1              0                3
  MX              0                6
                  vv
clus                I II III+IV
  PRR23B MUTATED    7  2      0
  PRR23B WILD-TYPE 90 36     41
D122V9, multiclass
        clus
vv       PRR23B MUTATED PRR23B WILD-TYPE
  I                   7               90
  II                  2               36
  III+IV              0               41
D122V10, binary
                  cls
clus                 0   1
  PRR23B MUTATED     0   9
  PRR23B WILD-TYPE   4 165
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PRR23B MUTATED      0    9
  PRR23B WILD-TYPE    4  165
     clus
vv    PRR23B MUTATED PRR23B WILD-TYPE
  NO               0                4
  YES              9              165
D122V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  PRR23B MUTATED                                             7
  PRR23B WILD-TYPE                                          87
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  PRR23B MUTATED                                        2              0
  PRR23B WILD-TYPE                                     41             28
                  vv
clus               LIFELONG NON-SMOKER
  PRR23B MUTATED                     0
  PRR23B WILD-TYPE                   8
D122V12, multiclass
                                             clus
vv                                            PRR23B MUTATED PRR23B WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              7               87
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               41
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      0                8
D122V13, continuous
                  vv
clus                R0  R1  R2  RX
  PRR23B MUTATED     8   1   0   0
  PRR23B WILD-TYPE 139   1   4  10
D122V14, multiclass
    clus
vv   PRR23B MUTATED PRR23B WILD-TYPE
  R0              8              139
  R1              1                1
  R2              0                4
  RX              0               10

Clustering(123) Variable = RTN1 MUTATION ANALYSIS
D123V1, survival
                sevent
clus2             0  1
  RTN1 MUTATED    6  4
  RTN1 WILD-TYPE 91 66
  RTN1 MUTATED RTN1 WILD-TYPE 
            10            157 
  RTN1 MUTATED RTN1 WILD-TYPE 
             4             66 
$`RTN1 MUTATED`
TCGA-18-3409 TCGA-22-5482 TCGA-33-4566 TCGA-33-4583 TCGA-39-5019 TCGA-43-6143 
       79.46        11.74       173.79       141.34        44.71         7.00 
TCGA-43-6647 TCGA-60-2698 TCGA-66-2754 TCGA-66-2789 
        6.02        10.22         2.01         4.04 

$`RTN1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5485 
       63.52        14.60        44.22         0.79        71.34        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
       43.10       103.53        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6770 TCGA-43-6771 
       18.08        11.57        18.84         8.48         2.79         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 
       28.93         0.10         2.04         1.02        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       30.61         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
       23.64        11.77        16.96        43.10        21.07         0.99 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2791 
       24.95         1.94        25.97        40.01        22.98         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 
TCGA-85-6561 
        0.79 

  RTN1 MUTATED RTN1 WILD-TYPE 
          2.01           0.10 
  RTN1 MUTATED RTN1 WILD-TYPE 
        173.79         115.59 
  RTN1 MUTATED RTN1 WILD-TYPE 
         10.98          18.08 
[1] "2.0 - 173.8 (11.0)" "0.1 - 115.6 (18.1)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "RTN1 MUTATED" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE"   "RTN1 MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
  "RTN1 MUTATED" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "RTN1 MUTATED" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE"   "RTN1 MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
  "RTN1 MUTATED" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "RTN1 MUTATED" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE"   "RTN1 MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
  "RTN1 MUTATED" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
[1] "hr=" "2.1"
D123V2, continuous
D123V3, binary
                cls
clus               0   1
  RTN1 MUTATED     1  11
  RTN1 WILD-TYPE  46 120
[1] "tbl2"
                cls
clus             [,1] [,2]
  RTN1 MUTATED      1   11
  RTN1 WILD-TYPE   46  120
        clus
vv       RTN1 MUTATED RTN1 WILD-TYPE
  FEMALE            1             46
  MALE             11            120
D123V4, continuous
[1] "Remove cluster labels:" "RTN1 MUTATED"          
clus
  RTN1 MUTATED RTN1 WILD-TYPE 
             2             34 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3410     TCGA-18-3414 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-18-3419     TCGA-21-5782     TCGA-21-5787     TCGA-22-4591 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-4593     TCGA-22-4595     TCGA-22-4599     TCGA-22-4601 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-4604     TCGA-22-4613     TCGA-22-5472     TCGA-22-5473 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-5485     TCGA-22-5489     TCGA-22-5491     TCGA-22-5492 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-34-5234     TCGA-37-4133     TCGA-37-4135     TCGA-37-5819 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-60-2712     TCGA-60-2715     TCGA-60-2725     TCGA-60-2726 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-70-6722     TCGA-70-6723 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
                vv
clus             LUNG BASALOID SQUAMOUS CELL CARCINOMA
  RTN1 MUTATED                                       2
  RTN1 WILD-TYPE                                     3
                vv
clus             LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  RTN1 MUTATED                                        0
  RTN1 WILD-TYPE                                      1
                vv
clus             LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  RTN1 MUTATED                                                            10
  RTN1 WILD-TYPE                                                         162
D123V5, multiclass
                                                             clus
vv                                                            RTN1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)           10
                                                             clus
vv                                                            RTN1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            162
                vv
clus              T1  T2  T3  T4
  RTN1 MUTATED     3   8   0   1
  RTN1 WILD-TYPE  33 108  14  11
D123V6, multiclass
    clus
vv   RTN1 MUTATED RTN1 WILD-TYPE
  T1            3             33
  T2            8            108
  T3            0             14
  T4            1             11
                vv
clus              N0  N1  N2  N3
  RTN1 MUTATED     8   2   1   1
  RTN1 WILD-TYPE 109  37  16   4
D123V7, multiclass
    clus
vv   RTN1 MUTATED RTN1 WILD-TYPE
  N0            8            109
  N1            2             37
  N2            1             16
  N3            1              4
                vv
clus              M0  M1  MX
  RTN1 MUTATED    11   0   1
  RTN1 WILD-TYPE 154   3   5
D123V8, multiclass
    clus
vv   RTN1 MUTATED RTN1 WILD-TYPE
  M0           11            154
  M1            0              3
  MX            1              5
                vv
clus              I II III+IV
  RTN1 MUTATED    5  4      2
  RTN1 WILD-TYPE 92 34     39
D123V9, multiclass
        clus
vv       RTN1 MUTATED RTN1 WILD-TYPE
  I                 5             92
  II                4             34
  III+IV            2             39
D123V10, binary
                cls
clus               0   1
  RTN1 MUTATED     0  12
  RTN1 WILD-TYPE   4 162
[1] "tbl2"
                cls
clus             [,1] [,2]
  RTN1 MUTATED      0   12
  RTN1 WILD-TYPE    4  162
     clus
vv    RTN1 MUTATED RTN1 WILD-TYPE
  NO             0              4
  YES           12            162
D123V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  RTN1 MUTATED                                             9
  RTN1 WILD-TYPE                                          85
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  RTN1 MUTATED                                        2              1
  RTN1 WILD-TYPE                                     41             27
                vv
clus             LIFELONG NON-SMOKER
  RTN1 MUTATED                     0
  RTN1 WILD-TYPE                   8
D123V12, multiclass
                                             clus
vv                                            RTN1 MUTATED RTN1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            9             85
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 2             41
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    0              8
D123V13, continuous
                vv
clus              R0  R1  R2  RX
  RTN1 MUTATED     8   1   0   3
  RTN1 WILD-TYPE 139   1   4   7
D123V14, multiclass
    clus
vv   RTN1 MUTATED RTN1 WILD-TYPE
  R0            8            139
  R1            1              1
  R2            0              4
  RX            3              7
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
           "KARNOFSKY.PERFORMANCE.SCORE" 
                                      V5 
                     "HISTOLOGICAL.TYPE" 
                                      V6 
                           "PATHOLOGY.T" 
                                      V7 
                           "PATHOLOGY.N" 
                                      V8 
                   "PATHOLOGICSPREAD(M)" 
                                      V9 
                           "TUMOR.STAGE" 
                                     V10 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                     V11 
                 "NUMBERPACKYEARSSMOKED" 
                                     V12 
        "TOBACCOSMOKINGHISTORYINDICATOR" 
                                     V13 
             "YEAROFTOBACCOSMOKINGONSET" 
                                     V14 
             "COMPLETENESS.OF.RESECTION" 
> q(save="no")
