
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_mutation_onlysig.3.4048/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_mutation_onlysig.3.4048/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/397822/LUSC-TP.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/LUSC-TP/3145458/1.GDAC_mergedClustering.Finished/LUSC-TP.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ONLYSIG", "-oT=LUSC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=LUSC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=399, in cluster file=178, common to both=178
[1] 123 178
[1] "CDKN2A MUTATION ANALYSIS"
[1] 3
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              26              152 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              26              152 
[1] "PIK3CA MUTATION ANALYSIS"
[1] 3
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              27              151 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              27              151 
[1] "NFE2L2 MUTATION ANALYSIS"
[1] 3
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
              27              151 
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
              27              151 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
           141             37 
  TP53 MUTATED TP53 WILD-TYPE 
           141             37 
[1] "TPTE MUTATION ANALYSIS"
[1] 3
  TPTE MUTATED TPTE WILD-TYPE 
            24            154 
  TPTE MUTATED TPTE WILD-TYPE 
            24            154 
[1] "KEAP1 MUTATION ANALYSIS"
[1] 3
  KEAP1 MUTATED KEAP1 WILD-TYPE 
             22             156 
  KEAP1 MUTATED KEAP1 WILD-TYPE 
             22             156 
[1] "SI MUTATION ANALYSIS"
[1] 3
  SI MUTATED SI WILD-TYPE 
          36          142 
  SI MUTATED SI WILD-TYPE 
          36          142 
[1] "PTEN MUTATION ANALYSIS"
[1] 3
  PTEN MUTATED PTEN WILD-TYPE 
            14            164 
  PTEN MUTATED PTEN WILD-TYPE 
            14            164 
[1] "TRIM58 MUTATION ANALYSIS"
[1] 3
  TRIM58 MUTATED TRIM58 WILD-TYPE 
              15              163 
  TRIM58 MUTATED TRIM58 WILD-TYPE 
              15              163 
[1] "OR5L2 MUTATION ANALYSIS"
[1] 3
  OR5L2 MUTATED OR5L2 WILD-TYPE 
             13             165 
  OR5L2 MUTATED OR5L2 WILD-TYPE 
             13             165 
[1] "FAM5C MUTATION ANALYSIS"
[1] 3
  FAM5C MUTATED FAM5C WILD-TYPE 
             27             151 
  FAM5C MUTATED FAM5C WILD-TYPE 
             27             151 
[1] "LRRC4C MUTATION ANALYSIS"
[1] 3
  LRRC4C MUTATED LRRC4C WILD-TYPE 
              17              161 
  LRRC4C MUTATED LRRC4C WILD-TYPE 
              17              161 
[1] "ZBBX MUTATION ANALYSIS"
[1] 3
  ZBBX MUTATED ZBBX WILD-TYPE 
            17            161 
  ZBBX MUTATED ZBBX WILD-TYPE 
            17            161 
[1] "DPPA4 MUTATION ANALYSIS"
[1] 3
  DPPA4 MUTATED DPPA4 WILD-TYPE 
             12             166 
  DPPA4 MUTATED DPPA4 WILD-TYPE 
             12             166 
[1] "ASB5 MUTATION ANALYSIS"
[1] 3
  ASB5 MUTATED ASB5 WILD-TYPE 
             9            169 
  ASB5 MUTATED ASB5 WILD-TYPE 
             9            169 
[1] "PDYN MUTATION ANALYSIS"
[1] 3
  PDYN MUTATED PDYN WILD-TYPE 
            10            168 
  PDYN MUTATED PDYN WILD-TYPE 
            10            168 
[1] "REG1B MUTATION ANALYSIS"
[1] 3
  REG1B MUTATED REG1B WILD-TYPE 
             11             167 
  REG1B MUTATED REG1B WILD-TYPE 
             11             167 
[1] "CYP11B1 MUTATION ANALYSIS"
[1] 3
  CYP11B1 MUTATED CYP11B1 WILD-TYPE 
               15               163 
  CYP11B1 MUTATED CYP11B1 WILD-TYPE 
               15               163 
[1] "CRB1 MUTATION ANALYSIS"
[1] 3
  CRB1 MUTATED CRB1 WILD-TYPE 
            23            155 
  CRB1 MUTATED CRB1 WILD-TYPE 
            23            155 
[1] "OR6F1 MUTATION ANALYSIS"
[1] 3
  OR6F1 MUTATED OR6F1 WILD-TYPE 
             13             165 
  OR6F1 MUTATED OR6F1 WILD-TYPE 
             13             165 
[1] "ESRRG MUTATION ANALYSIS"
[1] 3
  ESRRG MUTATED ESRRG WILD-TYPE 
             12             166 
  ESRRG MUTATED ESRRG WILD-TYPE 
             12             166 
[1] "OR2T33 MUTATION ANALYSIS"
[1] 3
  OR2T33 MUTATED OR2T33 WILD-TYPE 
              14              164 
  OR2T33 MUTATED OR2T33 WILD-TYPE 
              14              164 
[1] "OR2G6 MUTATION ANALYSIS"
[1] 3
  OR2G6 MUTATED OR2G6 WILD-TYPE 
             16             162 
  OR2G6 MUTATED OR2G6 WILD-TYPE 
             16             162 
[1] "USP29 MUTATION ANALYSIS"
[1] 3
  USP29 MUTATED USP29 WILD-TYPE 
             17             161 
  USP29 MUTATED USP29 WILD-TYPE 
             17             161 
[1] "REG3A MUTATION ANALYSIS"
[1] 3
  REG3A MUTATED REG3A WILD-TYPE 
             11             167 
  REG3A MUTATED REG3A WILD-TYPE 
             11             167 
[1] "PNLIPRP3 MUTATION ANALYSIS"
[1] 3
  PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE 
                12                166 
  PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE 
                12                166 
[1] "MAGEB2 MUTATION ANALYSIS"
[1] 3
  MAGEB2 MUTATED MAGEB2 WILD-TYPE 
               9              169 
  MAGEB2 MUTATED MAGEB2 WILD-TYPE 
               9              169 
[1] "SPHKAP MUTATION ANALYSIS"
[1] 3
  SPHKAP MUTATED SPHKAP WILD-TYPE 
              27              151 
  SPHKAP MUTATED SPHKAP WILD-TYPE 
              27              151 
[1] "CFHR4 MUTATION ANALYSIS"
[1] 3
  CFHR4 MUTATED CFHR4 WILD-TYPE 
             10             168 
  CFHR4 MUTATED CFHR4 WILD-TYPE 
             10             168 
[1] "CPS1 MUTATION ANALYSIS"
[1] 3
  CPS1 MUTATED CPS1 WILD-TYPE 
            25            153 
  CPS1 MUTATED CPS1 WILD-TYPE 
            25            153 
[1] "ELTD1 MUTATION ANALYSIS"
[1] 3
  ELTD1 MUTATED ELTD1 WILD-TYPE 
             18             160 
  ELTD1 MUTATED ELTD1 WILD-TYPE 
             18             160 
[1] "OR4M2 MUTATION ANALYSIS"
[1] 3
  OR4M2 MUTATED OR4M2 WILD-TYPE 
             14             164 
  OR4M2 MUTATED OR4M2 WILD-TYPE 
             14             164 
[1] "OR51B2 MUTATION ANALYSIS"
[1] 3
  OR51B2 MUTATED OR51B2 WILD-TYPE 
              10              168 
  OR51B2 MUTATED OR51B2 WILD-TYPE 
              10              168 
[1] "SLC13A1 MUTATION ANALYSIS"
[1] 3
  SLC13A1 MUTATED SLC13A1 WILD-TYPE 
               12               166 
  SLC13A1 MUTATED SLC13A1 WILD-TYPE 
               12               166 
[1] "TGIF2LX MUTATION ANALYSIS"
[1] 3
  TGIF2LX MUTATED TGIF2LX WILD-TYPE 
                9               169 
  TGIF2LX MUTATED TGIF2LX WILD-TYPE 
                9               169 
[1] "ASCL4 MUTATION ANALYSIS"
[1] 3
  ASCL4 MUTATED ASCL4 WILD-TYPE 
              6             172 
  ASCL4 MUTATED ASCL4 WILD-TYPE 
              6             172 
[1] "REG3G MUTATION ANALYSIS"
[1] 3
  REG3G MUTATED REG3G WILD-TYPE 
              8             170 
  REG3G MUTATED REG3G WILD-TYPE 
              8             170 
[1] "CBLN4 MUTATION ANALYSIS"
[1] 3
  CBLN4 MUTATED CBLN4 WILD-TYPE 
              5             173 
  CBLN4 MUTATED CBLN4 WILD-TYPE 
              5             173 
[1] "OR10G8 MUTATION ANALYSIS"
[1] 3
  OR10G8 MUTATED OR10G8 WILD-TYPE 
              10              168 
  OR10G8 MUTATED OR10G8 WILD-TYPE 
              10              168 
[1] "OR4M1 MUTATION ANALYSIS"
[1] 3
  OR4M1 MUTATED OR4M1 WILD-TYPE 
             13             165 
  OR4M1 MUTATED OR4M1 WILD-TYPE 
             13             165 
[1] "OR2T2 MUTATION ANALYSIS"
[1] 3
  OR2T2 MUTATED OR2T2 WILD-TYPE 
              7             171 
  OR2T2 MUTATED OR2T2 WILD-TYPE 
              7             171 
[1] "OR2T8 MUTATION ANALYSIS"
[1] 3
  OR2T8 MUTATED OR2T8 WILD-TYPE 
              8             170 
  OR2T8 MUTATED OR2T8 WILD-TYPE 
              8             170 
[1] "SPANXN1 MUTATION ANALYSIS"
[1] 3
  SPANXN1 MUTATED SPANXN1 WILD-TYPE 
                5               173 
  SPANXN1 MUTATED SPANXN1 WILD-TYPE 
                5               173 
[1] "C20ORF26 MUTATION ANALYSIS"
[1] 3
  C20ORF26 MUTATED C20ORF26 WILD-TYPE 
                20                158 
  C20ORF26 MUTATED C20ORF26 WILD-TYPE 
                20                158 
[1] "ZEB2 MUTATION ANALYSIS"
[1] 3
  ZEB2 MUTATED ZEB2 WILD-TYPE 
            15            163 
  ZEB2 MUTATED ZEB2 WILD-TYPE 
            15            163 
[1] "PSG6 MUTATION ANALYSIS"
[1] 3
  PSG6 MUTATED PSG6 WILD-TYPE 
             9            169 
  PSG6 MUTATED PSG6 WILD-TYPE 
             9            169 
[1] "REG1A MUTATION ANALYSIS"
[1] 3
  REG1A MUTATED REG1A WILD-TYPE 
             11             167 
  REG1A MUTATED REG1A WILD-TYPE 
             11             167 
[1] "CLSTN2 MUTATION ANALYSIS"
[1] 3
  CLSTN2 MUTATED CLSTN2 WILD-TYPE 
              17              161 
  CLSTN2 MUTATED CLSTN2 WILD-TYPE 
              17              161 
[1] "MTNR1B MUTATION ANALYSIS"
[1] 3
  MTNR1B MUTATED MTNR1B WILD-TYPE 
              10              168 
  MTNR1B MUTATED MTNR1B WILD-TYPE 
              10              168 
[1] "RB1 MUTATION ANALYSIS"
[1] 3
  RB1 MUTATED RB1 WILD-TYPE 
           12           166 
  RB1 MUTATED RB1 WILD-TYPE 
           12           166 
[1] "ZNF567 MUTATION ANALYSIS"
[1] 3
  ZNF567 MUTATED ZNF567 WILD-TYPE 
               3              175 
  ZNF567 MUTATED ZNF567 WILD-TYPE 
               3              175 
[1] "OR2A5 MUTATION ANALYSIS"
[1] 3
  OR2A5 MUTATED OR2A5 WILD-TYPE 
              8             170 
  OR2A5 MUTATED OR2A5 WILD-TYPE 
              8             170 
[1] "PARK2 MUTATION ANALYSIS"
[1] 3
  PARK2 MUTATED PARK2 WILD-TYPE 
             10             168 
  PARK2 MUTATED PARK2 WILD-TYPE 
             10             168 
[1] "HS6ST1 MUTATION ANALYSIS"
[1] 3
  HS6ST1 MUTATED HS6ST1 WILD-TYPE 
               5              173 
  HS6ST1 MUTATED HS6ST1 WILD-TYPE 
               5              173 
[1] "RNF144A MUTATION ANALYSIS"
[1] 3
  RNF144A MUTATED RNF144A WILD-TYPE 
                7               171 
  RNF144A MUTATED RNF144A WILD-TYPE 
                7               171 
[1] "CALN1 MUTATION ANALYSIS"
[1] 3
  CALN1 MUTATED CALN1 WILD-TYPE 
              9             169 
  CALN1 MUTATED CALN1 WILD-TYPE 
              9             169 
[1] "ZNF80 MUTATION ANALYSIS"
[1] 3
  ZNF80 MUTATED ZNF80 WILD-TYPE 
              7             171 
  ZNF80 MUTATED ZNF80 WILD-TYPE 
              7             171 
[1] "CLVS2 MUTATION ANALYSIS"
[1] 3
  CLVS2 MUTATED CLVS2 WILD-TYPE 
              9             169 
  CLVS2 MUTATED CLVS2 WILD-TYPE 
              9             169 
[1] "OR5M9 MUTATION ANALYSIS"
[1] 3
  OR5M9 MUTATED OR5M9 WILD-TYPE 
              8             170 
  OR5M9 MUTATED OR5M9 WILD-TYPE 
              8             170 
[1] "SLC17A8 MUTATION ANALYSIS"
[1] 3
  SLC17A8 MUTATED SLC17A8 WILD-TYPE 
               13               165 
  SLC17A8 MUTATED SLC17A8 WILD-TYPE 
               13               165 
[1] "TECRL MUTATION ANALYSIS"
[1] 3
  TECRL MUTATED TECRL WILD-TYPE 
              9             169 
  TECRL MUTATED TECRL WILD-TYPE 
              9             169 
[1] "OR4D5 MUTATION ANALYSIS"
[1] 3
  OR4D5 MUTATED OR4D5 WILD-TYPE 
              9             169 
  OR4D5 MUTATED OR4D5 WILD-TYPE 
              9             169 
[1] "POTEG MUTATION ANALYSIS"
[1] 3
  POTEG MUTATED POTEG WILD-TYPE 
             10             168 
  POTEG MUTATED POTEG WILD-TYPE 
             10             168 
[1] "TEX13A MUTATION ANALYSIS"
[1] 3
  TEX13A MUTATED TEX13A WILD-TYPE 
               8              170 
  TEX13A MUTATED TEX13A WILD-TYPE 
               8              170 
[1] "HIST2H2BE MUTATION ANALYSIS"
[1] 3
  HIST2H2BE MUTATED HIST2H2BE WILD-TYPE 
                  3                 175 
  HIST2H2BE MUTATED HIST2H2BE WILD-TYPE 
                  3                 175 
[1] "KCNJ3 MUTATION ANALYSIS"
[1] 3
  KCNJ3 MUTATED KCNJ3 WILD-TYPE 
             11             167 
  KCNJ3 MUTATED KCNJ3 WILD-TYPE 
             11             167 
[1] "NUCB2 MUTATION ANALYSIS"
[1] 3
  NUCB2 MUTATED NUCB2 WILD-TYPE 
              6             172 
  NUCB2 MUTATED NUCB2 WILD-TYPE 
              6             172 
[1] "TRHDE MUTATION ANALYSIS"
[1] 3
  TRHDE MUTATED TRHDE WILD-TYPE 
             14             164 
  TRHDE MUTATED TRHDE WILD-TYPE 
             14             164 
[1] "OR14A16 MUTATION ANALYSIS"
[1] 3
  OR14A16 MUTATED OR14A16 WILD-TYPE 
               10               168 
  OR14A16 MUTATED OR14A16 WILD-TYPE 
               10               168 
[1] "OR6K3 MUTATION ANALYSIS"
[1] 3
  OR6K3 MUTATED OR6K3 WILD-TYPE 
              8             170 
  OR6K3 MUTATED OR6K3 WILD-TYPE 
              8             170 
[1] "SLC6A5 MUTATION ANALYSIS"
[1] 3
  SLC6A5 MUTATED SLC6A5 WILD-TYPE 
               6              172 
  SLC6A5 MUTATED SLC6A5 WILD-TYPE 
               6              172 
[1] "OR2AK2 MUTATION ANALYSIS"
[1] 3
  OR2AK2 MUTATED OR2AK2 WILD-TYPE 
               8              170 
  OR2AK2 MUTATED OR2AK2 WILD-TYPE 
               8              170 
[1] "FAM5B MUTATION ANALYSIS"
[1] 3
  FAM5B MUTATED FAM5B WILD-TYPE 
             14             164 
  FAM5B MUTATED FAM5B WILD-TYPE 
             14             164 
[1] "OR10A4 MUTATION ANALYSIS"
[1] 3
  OR10A4 MUTATED OR10A4 WILD-TYPE 
               8              170 
  OR10A4 MUTATED OR10A4 WILD-TYPE 
               8              170 
[1] "OR8H1 MUTATION ANALYSIS"
[1] 3
  OR8H1 MUTATED OR8H1 WILD-TYPE 
              8             170 
  OR8H1 MUTATED OR8H1 WILD-TYPE 
              8             170 
[1] "PYHIN1 MUTATION ANALYSIS"
[1] 3
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
              11              167 
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
              11              167 
[1] "CNTNAP4 MUTATION ANALYSIS"
[1] 3
  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
               16               162 
  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
               16               162 
[1] "HRAS MUTATION ANALYSIS"
[1] 3
  HRAS MUTATED HRAS WILD-TYPE 
             5            173 
  HRAS MUTATED HRAS WILD-TYPE 
             5            173 
[1] "PRIM2 MUTATION ANALYSIS"
[1] 3
  PRIM2 MUTATED PRIM2 WILD-TYPE 
             13             165 
  PRIM2 MUTATED PRIM2 WILD-TYPE 
             13             165 
[1] "SPOPL MUTATION ANALYSIS"
[1] 3
  SPOPL MUTATED SPOPL WILD-TYPE 
              6             172 
  SPOPL MUTATED SPOPL WILD-TYPE 
              6             172 
[1] "GPC5 MUTATION ANALYSIS"
[1] 3
  GPC5 MUTATED GPC5 WILD-TYPE 
            11            167 
  GPC5 MUTATED GPC5 WILD-TYPE 
            11            167 
[1] "HLA-A MUTATION ANALYSIS"
[1] 3
  HLA-A MUTATED HLA-A WILD-TYPE 
              6             172 
  HLA-A MUTATED HLA-A WILD-TYPE 
              6             172 
[1] "OR5AC2 MUTATION ANALYSIS"
[1] 3
  OR5AC2 MUTATED OR5AC2 WILD-TYPE 
               7              171 
  OR5AC2 MUTATED OR5AC2 WILD-TYPE 
               7              171 
[1] "GABRA2 MUTATION ANALYSIS"
[1] 3
  GABRA2 MUTATED GABRA2 WILD-TYPE 
              12              166 
  GABRA2 MUTATED GABRA2 WILD-TYPE 
              12              166 
[1] "GBA3 MUTATION ANALYSIS"
[1] 3
  GBA3 MUTATED GBA3 WILD-TYPE 
             9            169 
  GBA3 MUTATED GBA3 WILD-TYPE 
             9            169 
[1] "KIRREL2 MUTATION ANALYSIS"
[1] 3
  KIRREL2 MUTATED KIRREL2 WILD-TYPE 
               11               167 
  KIRREL2 MUTATED KIRREL2 WILD-TYPE 
               11               167 
[1] "MS4A14 MUTATION ANALYSIS"
[1] 3
  MS4A14 MUTATED MS4A14 WILD-TYPE 
              12              166 
  MS4A14 MUTATED MS4A14 WILD-TYPE 
              12              166 
[1] "TMEM195 MUTATION ANALYSIS"
[1] 3
  TMEM195 MUTATED TMEM195 WILD-TYPE 
                8               170 
  TMEM195 MUTATED TMEM195 WILD-TYPE 
                8               170 
[1] "TMEM90A MUTATION ANALYSIS"
[1] 3
  TMEM90A MUTATED TMEM90A WILD-TYPE 
                4               174 
  TMEM90A MUTATED TMEM90A WILD-TYPE 
                4               174 
[1] "ZFP42 MUTATION ANALYSIS"
[1] 3
  ZFP42 MUTATED ZFP42 WILD-TYPE 
              8             170 
  ZFP42 MUTATED ZFP42 WILD-TYPE 
              8             170 
[1] "LEPROT MUTATION ANALYSIS"
[1] 3
  LEPROT MUTATED LEPROT WILD-TYPE 
               4              174 
  LEPROT MUTATED LEPROT WILD-TYPE 
               4              174 
[1] "LRRTM3 MUTATION ANALYSIS"
[1] 3
  LRRTM3 MUTATED LRRTM3 WILD-TYPE 
               8              170 
  LRRTM3 MUTATED LRRTM3 WILD-TYPE 
               8              170 
[1] "OR4N4 MUTATION ANALYSIS"
[1] 3
  OR4N4 MUTATED OR4N4 WILD-TYPE 
              9             169 
  OR4N4 MUTATED OR4N4 WILD-TYPE 
              9             169 
[1] "SNAI1 MUTATION ANALYSIS"
[1] 3
  SNAI1 MUTATED SNAI1 WILD-TYPE 
              4             174 
  SNAI1 MUTATED SNAI1 WILD-TYPE 
              4             174 
[1] "APOBEC1 MUTATION ANALYSIS"
[1] 3
  APOBEC1 MUTATED APOBEC1 WILD-TYPE 
                7               171 
  APOBEC1 MUTATED APOBEC1 WILD-TYPE 
                7               171 
[1] "BAGE2 MUTATION ANALYSIS"
[1] 3
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              3             175 
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              3             175 
[1] "CD5L MUTATION ANALYSIS"
[1] 3
  CD5L MUTATED CD5L WILD-TYPE 
             8            170 
  CD5L MUTATED CD5L WILD-TYPE 
             8            170 
[1] "LIN37 MUTATION ANALYSIS"
[1] 3
  LIN37 MUTATED LIN37 WILD-TYPE 
              3             175 
  LIN37 MUTATED LIN37 WILD-TYPE 
              3             175 
[1] "OR4C11 MUTATION ANALYSIS"
[1] 3
  OR4C11 MUTATED OR4C11 WILD-TYPE 
               7              171 
  OR4C11 MUTATED OR4C11 WILD-TYPE 
               7              171 
[1] "OR8K5 MUTATION ANALYSIS"
[1] 3
  OR8K5 MUTATED OR8K5 WILD-TYPE 
              6             172 
  OR8K5 MUTATED OR8K5 WILD-TYPE 
              6             172 
[1] "GABRG3 MUTATION ANALYSIS"
[1] 3
  GABRG3 MUTATED GABRG3 WILD-TYPE 
              10              168 
  GABRG3 MUTATED GABRG3 WILD-TYPE 
              10              168 
[1] "KRTAP10-7 MUTATION ANALYSIS"
[1] 3
  KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE 
                  7                 171 
  KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE 
                  7                 171 
[1] "UGT3A2 MUTATION ANALYSIS"
[1] 3
  UGT3A2 MUTATED UGT3A2 WILD-TYPE 
              10              168 
  UGT3A2 MUTATED UGT3A2 WILD-TYPE 
              10              168 
[1] "PRB2 MUTATION ANALYSIS"
[1] 3
  PRB2 MUTATED PRB2 WILD-TYPE 
             7            171 
  PRB2 MUTATED PRB2 WILD-TYPE 
             7            171 
[1] "HDAC9 MUTATION ANALYSIS"
[1] 3
  HDAC9 MUTATED HDAC9 WILD-TYPE 
             14             164 
  HDAC9 MUTATED HDAC9 WILD-TYPE 
             14             164 
[1] "HAO1 MUTATION ANALYSIS"
[1] 3
  HAO1 MUTATED HAO1 WILD-TYPE 
             7            171 
  HAO1 MUTATED HAO1 WILD-TYPE 
             7            171 
[1] "OR2T12 MUTATION ANALYSIS"
[1] 3
  OR2T12 MUTATED OR2T12 WILD-TYPE 
               8              170 
  OR2T12 MUTATED OR2T12 WILD-TYPE 
               8              170 
[1] "OR5AS1 MUTATION ANALYSIS"
[1] 3
  OR5AS1 MUTATED OR5AS1 WILD-TYPE 
               7              171 
  OR5AS1 MUTATED OR5AS1 WILD-TYPE 
               7              171 
[1] "SCN7A MUTATION ANALYSIS"
[1] 3
  SCN7A MUTATED SCN7A WILD-TYPE 
             14             164 
  SCN7A MUTATED SCN7A WILD-TYPE 
             14             164 
[1] "SNTG2 MUTATION ANALYSIS"
[1] 3
  SNTG2 MUTATED SNTG2 WILD-TYPE 
              8             170 
  SNTG2 MUTATED SNTG2 WILD-TYPE 
              8             170 
[1] "FRG2B MUTATION ANALYSIS"
[1] 3
  FRG2B MUTATED FRG2B WILD-TYPE 
              5             173 
  FRG2B MUTATED FRG2B WILD-TYPE 
              5             173 
[1] "OR8K3 MUTATION ANALYSIS"
[1] 3
  OR8K3 MUTATED OR8K3 WILD-TYPE 
              7             171 
  OR8K3 MUTATED OR8K3 WILD-TYPE 
              7             171 
[1] "OR5T1 MUTATION ANALYSIS"
[1] 3
  OR5T1 MUTATED OR5T1 WILD-TYPE 
             10             168 
  OR5T1 MUTATED OR5T1 WILD-TYPE 
             10             168 
[1] "FCAR MUTATION ANALYSIS"
[1] 3
  FCAR MUTATED FCAR WILD-TYPE 
             8            170 
  FCAR MUTATED FCAR WILD-TYPE 
             8            170 
[1] "OR2M7 MUTATION ANALYSIS"
[1] 3
  OR2M7 MUTATED OR2M7 WILD-TYPE 
              8             170 
  OR2M7 MUTATED OR2M7 WILD-TYPE 
              8             170 
[1] "CPXCR1 MUTATION ANALYSIS"
[1] 3
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               6              172 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               6              172 
[1] "COL6A6 MUTATION ANALYSIS"
[1] 3
  COL6A6 MUTATED COL6A6 WILD-TYPE 
              19              159 
  COL6A6 MUTATED COL6A6 WILD-TYPE 
              19              159 
[1] "GP2 MUTATION ANALYSIS"
[1] 3
  GP2 MUTATED GP2 WILD-TYPE 
           11           167 
  GP2 MUTATED GP2 WILD-TYPE 
           11           167 
[1] "CCDC85A MUTATION ANALYSIS"
[1] 3
  CCDC85A MUTATED CCDC85A WILD-TYPE 
                9               169 
  CCDC85A MUTATED CCDC85A WILD-TYPE 
                9               169 
[1] "OR2T3 MUTATION ANALYSIS"
[1] 3
  OR2T3 MUTATED OR2T3 WILD-TYPE 
              6             172 
  OR2T3 MUTATED OR2T3 WILD-TYPE 
              6             172 
[1] "EIF3E MUTATION ANALYSIS"
[1] 3
  EIF3E MUTATED EIF3E WILD-TYPE 
              5             173 
  EIF3E MUTATED EIF3E WILD-TYPE 
              5             173 
[1] "PRR23B MUTATION ANALYSIS"
[1] 3
  PRR23B MUTATED PRR23B WILD-TYPE 
               9              169 
  PRR23B MUTATED PRR23B WILD-TYPE 
               9              169 
[1] "RTN1 MUTATION ANALYSIS"
[1] 3
  RTN1 MUTATED RTN1 WILD-TYPE 
            12            166 
  RTN1 MUTATED RTN1 WILD-TYPE 
            12            166 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "CN_CNMF"              
 [4] "METHLYATION_CNMF"      "RPPA_CNMF"             "RPPA_CHIERARCHICAL"   
 [7] "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"          
[10] "MIRSEQ_CHIERARCHICAL" 

Input Data has 10 rows and 178 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "CN_CNMF"              
 [4] "METHLYATION_CNMF"      "RPPA_CNMF"             "RPPA_CHIERARCHICAL"   
 [7] "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"          
[10] "MIRSEQ_CHIERARCHICAL" 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 178 columns, 0 survival variables, and 10 non-survival variables.
MRNA_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = CDKN2A MUTATION ANALYSIS
D1V1, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              0               38
  CLUS_2             13               33
  CLUS_3              3               12
  CLUS_4              2               20
D1V2, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              1               10
  CLUS_2             13               37
  CLUS_3              4               56
D1V3, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              3               53
  CLUS_2             16               51
  CLUS_3              7               48
D1V4, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              2               25
  CLUS_2              4               26
  CLUS_3              3               14
D1V5, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              2               32
  CLUS_2              8               39
  CLUS_3              3               28
D1V6, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              3               28
  CLUS_2              1               26
  CLUS_3              4               29
  CLUS_4              5               16
D1V7, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              4               31
  CLUS_2             12               50
  CLUS_3              5               48
  CLUS_4              5               23
D1V8, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             13               51
  CLUS_2              2               28
  CLUS_3             11               73
D1V9, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             16               89
  CLUS_2              3               24
  CLUS_3              5               25
D1V10, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              8               31
  CLUS_2             12               77
  CLUS_3              4               30

Clustering(2) Variable = PIK3CA MUTATION ANALYSIS
D2V1, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              5               33
  CLUS_2              5               41
  CLUS_3              2               13
  CLUS_4              5               17
D2V2, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              1               10
  CLUS_2              6               44
  CLUS_3             10               50
D2V3, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             10               46
  CLUS_2              7               60
  CLUS_3             10               45
D2V4, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              4               23
  CLUS_2              4               26
  CLUS_3              3               14
D2V5, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              5               29
  CLUS_2              7               40
  CLUS_3              5               26
D2V6, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              4               27
  CLUS_2              4               23
  CLUS_3              7               26
  CLUS_4              2               19
D2V7, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              7               28
  CLUS_2              7               55
  CLUS_3             11               42
  CLUS_4              2               26
D2V8, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              9               55
  CLUS_2              5               25
  CLUS_3             13               71
D2V9, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             18               87
  CLUS_2              4               23
  CLUS_3              2               28
D2V10, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              6               33
  CLUS_2             15               74
  CLUS_3              3               31

Clustering(3) Variable = NFE2L2 MUTATION ANALYSIS
D3V1, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              0               38
  CLUS_2             14               32
  CLUS_3              1               14
  CLUS_4              1               21
D3V2, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              1               10
  CLUS_2             14               36
  CLUS_3              1               59
D3V3, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              7               49
  CLUS_2             17               50
  CLUS_3              3               52
D3V4, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              4               23
  CLUS_2              8               22
  CLUS_3              0               17
D3V5, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              8               26
  CLUS_2              5               42
  CLUS_3              6               25
D3V6, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              6               25
  CLUS_2              5               22
  CLUS_3              2               31
  CLUS_4              6               15
D3V7, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              2               33
  CLUS_2             22               40
  CLUS_3              1               52
  CLUS_4              2               26
D3V8, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1             21               43
  CLUS_2              1               29
  CLUS_3              5               79
D3V9, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1             13               92
  CLUS_2              1               26
  CLUS_3             12               18
D3V10, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              1               38
  CLUS_2             11               78
  CLUS_3             14               20

Clustering(4) Variable = TP53 MUTATION ANALYSIS
D4V1, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           30              8
  CLUS_2           41              5
  CLUS_3            8              7
  CLUS_4           17              5
D4V2, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            9              2
  CLUS_2           45              5
  CLUS_3           42             18
D4V3, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           33             23
  CLUS_2           61              6
  CLUS_3           47              8
D4V4, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           16             11
  CLUS_2           29              1
  CLUS_3           14              3
D4V5, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           26              8
  CLUS_2           37             10
  CLUS_3           24              7
D4V6, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           23              8
  CLUS_2           21              6
  CLUS_3           27              6
  CLUS_4           16              5
D4V7, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           27              8
  CLUS_2           55              7
  CLUS_3           43             10
  CLUS_4           16             12
D4V8, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           57              7
  CLUS_2           25              5
  CLUS_3           59             25
D4V9, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           88             17
  CLUS_2           22              5
  CLUS_3           23              7
D4V10, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           33              6
  CLUS_2           70             19
  CLUS_3           30              4

Clustering(5) Variable = TPTE MUTATION ANALYSIS
D5V1, multiclass
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  CLUS_1            2             36
  CLUS_2            9             37
  CLUS_3            1             14
  CLUS_4            5             17
D5V2, multiclass
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  CLUS_1            2              9
  CLUS_2            9             41
  CLUS_3            6             54
D5V3, multiclass
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  CLUS_1            2             54
  CLUS_2           11             56
  CLUS_3           11             44
D5V4, multiclass
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  CLUS_1            2             25
  CLUS_2            6             24
  CLUS_3            2             15
D5V5, multiclass
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  CLUS_1            5             29
  CLUS_2            5             42
  CLUS_3            2             29
D5V6, multiclass
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  CLUS_1            3             28
  CLUS_2            4             23
  CLUS_3            3             30
  CLUS_4            2             19
D5V7, multiclass
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  CLUS_1            0             35
  CLUS_2           12             50
  CLUS_3            8             45
  CLUS_4            4             24
D5V8, multiclass
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  CLUS_1           12             52
  CLUS_2            3             27
  CLUS_3            9             75
D5V9, multiclass
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  CLUS_1           13             92
  CLUS_2            2             25
  CLUS_3            4             26
D5V10, multiclass
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  CLUS_1            3             36
  CLUS_2           10             79
  CLUS_3            6             28

Clustering(6) Variable = KEAP1 MUTATION ANALYSIS
D6V1, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1             0              38
  CLUS_2            12              34
  CLUS_3             1              14
  CLUS_4             4              18
D6V2, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1             3               8
  CLUS_2            13              37
  CLUS_3             1              59
D6V3, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1             3              53
  CLUS_2            13              54
  CLUS_3             6              49
D6V4, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1             0              27
  CLUS_2             4              26
  CLUS_3             3              14
D6V5, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1             5              29
  CLUS_2             2              45
  CLUS_3             4              27
D6V6, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1             3              28
  CLUS_2             6              21
  CLUS_3             1              32
  CLUS_4             1              20
D6V7, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1             1              34
  CLUS_2            12              50
  CLUS_3             6              47
  CLUS_4             3              25
D6V8, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1            12              52
  CLUS_2             6              24
  CLUS_3             4              80
D6V9, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1            13              92
  CLUS_2             2              25
  CLUS_3             3              27
D6V10, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1             7              32
  CLUS_2             6              83
  CLUS_3             5              29

Clustering(7) Variable = SI MUTATION ANALYSIS
D7V1, multiclass
        clus
vv       SI MUTATED SI WILD-TYPE
  CLUS_1          7           31
  CLUS_2          9           37
  CLUS_3          3           12
  CLUS_4          7           15
D7V2, multiclass
        clus
vv       SI MUTATED SI WILD-TYPE
  CLUS_1          3            8
  CLUS_2         11           39
  CLUS_3         12           48
D7V3, multiclass
        clus
vv       SI MUTATED SI WILD-TYPE
  CLUS_1          7           49
  CLUS_2         17           50
  CLUS_3         12           43
D7V4, multiclass
        clus
vv       SI MUTATED SI WILD-TYPE
  CLUS_1          7           20
  CLUS_2          5           25
  CLUS_3          1           16
D7V5, multiclass
        clus
vv       SI MUTATED SI WILD-TYPE
  CLUS_1          8           26
  CLUS_2          8           39
  CLUS_3          5           26
D7V6, multiclass
        clus
vv       SI MUTATED SI WILD-TYPE
  CLUS_1          6           25
  CLUS_2          6           21
  CLUS_3          6           27
  CLUS_4          3           18
D7V7, multiclass
        clus
vv       SI MUTATED SI WILD-TYPE
  CLUS_1          6           29
  CLUS_2         12           50
  CLUS_3         13           40
  CLUS_4          5           23
D7V8, multiclass
        clus
vv       SI MUTATED SI WILD-TYPE
  CLUS_1         15           49
  CLUS_2          6           24
  CLUS_3         15           69
D7V9, multiclass
        clus
vv       SI MUTATED SI WILD-TYPE
  CLUS_1         20           85
  CLUS_2          6           21
  CLUS_3          7           23
D7V10, multiclass
        clus
vv       SI MUTATED SI WILD-TYPE
  CLUS_1          6           33
  CLUS_2         19           70
  CLUS_3          8           26

Clustering(8) Variable = PTEN MUTATION ANALYSIS
D8V1, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            4             34
  CLUS_2            2             44
  CLUS_3            0             15
  CLUS_4            2             20
D8V2, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            1             10
  CLUS_2            2             48
  CLUS_3            5             55
D8V3, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            8             48
  CLUS_2            3             64
  CLUS_3            3             52
D8V4, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            5             22
  CLUS_2            3             27
  CLUS_3            0             17
D8V5, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            3             31
  CLUS_2            4             43
  CLUS_3            1             30
D8V6, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            2             29
  CLUS_2            2             25
  CLUS_3            1             32
  CLUS_4            3             18
D8V7, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            4             31
  CLUS_2            3             59
  CLUS_3            4             49
  CLUS_4            3             25
D8V8, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            3             61
  CLUS_2            5             25
  CLUS_3            6             78
D8V9, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            9             96
  CLUS_2            3             24
  CLUS_3            0             30
D8V10, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            3             36
  CLUS_2            8             81
  CLUS_3            1             33

Clustering(9) Variable = TRIM58 MUTATION ANALYSIS
D9V1, multiclass
        clus
vv       TRIM58 MUTATED TRIM58 WILD-TYPE
  CLUS_1              3               35
  CLUS_2              3               43
  CLUS_3              1               14
  CLUS_4              2               20
D9V2, multiclass
        clus
vv       TRIM58 MUTATED TRIM58 WILD-TYPE
  CLUS_1              1               10
  CLUS_2              2               48
  CLUS_3              6               54
D9V3, multiclass
        clus
vv       TRIM58 MUTATED TRIM58 WILD-TYPE
  CLUS_1              7               49
  CLUS_2              5               62
  CLUS_3              3               52
D9V4, multiclass
        clus
vv       TRIM58 MUTATED TRIM58 WILD-TYPE
  CLUS_1              3               24
  CLUS_2              3               27
  CLUS_3              2               15
D9V5, multiclass
        clus
vv       TRIM58 MUTATED TRIM58 WILD-TYPE
  CLUS_1              5               29
  CLUS_2              2               45
  CLUS_3              4               27
D9V6, multiclass
        clus
vv       TRIM58 MUTATED TRIM58 WILD-TYPE
  CLUS_1              5               26
  CLUS_2              4               23
  CLUS_3              2               31
  CLUS_4              0               21
D9V7, multiclass
        clus
vv       TRIM58 MUTATED TRIM58 WILD-TYPE
  CLUS_1              3               32
  CLUS_2              3               59
  CLUS_3              6               47
  CLUS_4              3               25
D9V8, multiclass
        clus
vv       TRIM58 MUTATED TRIM58 WILD-TYPE
  CLUS_1              3               61
  CLUS_2              3               27
  CLUS_3              9               75
D9V9, multiclass
        clus
vv       TRIM58 MUTATED TRIM58 WILD-TYPE
  CLUS_1              8               97
  CLUS_2              3               24
  CLUS_3              1               29
D9V10, multiclass
        clus
vv       TRIM58 MUTATED TRIM58 WILD-TYPE
  CLUS_1              5               34
  CLUS_2              6               83
  CLUS_3              1               33

Clustering(10) Variable = OR5L2 MUTATION ANALYSIS
D10V1, multiclass
        clus
vv       OR5L2 MUTATED OR5L2 WILD-TYPE
  CLUS_1             2              36
  CLUS_2             5              41
  CLUS_3             1              14
  CLUS_4             0              22
D10V2, multiclass
        clus
vv       OR5L2 MUTATED OR5L2 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             5              45
  CLUS_3             3              57
D10V3, multiclass
        clus
vv       OR5L2 MUTATED OR5L2 WILD-TYPE
  CLUS_1             1              55
  CLUS_2             7              60
  CLUS_3             5              50
D10V4, multiclass
        clus
vv       OR5L2 MUTATED OR5L2 WILD-TYPE
  CLUS_1             2              25
  CLUS_2             1              29
  CLUS_3             2              15
D10V5, multiclass
        clus
vv       OR5L2 MUTATED OR5L2 WILD-TYPE
  CLUS_1             4              30
  CLUS_2             1              46
  CLUS_3             3              28
D10V6, multiclass
        clus
vv       OR5L2 MUTATED OR5L2 WILD-TYPE
  CLUS_1             2              29
  CLUS_2             3              24
  CLUS_3             2              31
  CLUS_4             1              20
D10V7, multiclass
        clus
vv       OR5L2 MUTATED OR5L2 WILD-TYPE
  CLUS_1             0              35
  CLUS_2             6              56
  CLUS_3             5              48
  CLUS_4             2              26
D10V8, multiclass
        clus
vv       OR5L2 MUTATED OR5L2 WILD-TYPE
  CLUS_1             5              59
  CLUS_2             3              27
  CLUS_3             5              79
D10V9, multiclass
        clus
vv       OR5L2 MUTATED OR5L2 WILD-TYPE
  CLUS_1             7              98
  CLUS_2             1              26
  CLUS_3             4              26
D10V10, multiclass
        clus
vv       OR5L2 MUTATED OR5L2 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             5              84
  CLUS_3             5              29

Clustering(11) Variable = FAM5C MUTATION ANALYSIS
D11V1, multiclass
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  CLUS_1             4              34
  CLUS_2             9              37
  CLUS_3             1              14
  CLUS_4             4              18
D11V2, multiclass
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  CLUS_1             2               9
  CLUS_2             9              41
  CLUS_3             7              53
D11V3, multiclass
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  CLUS_1            10              46
  CLUS_2            13              54
  CLUS_3             4              51
D11V4, multiclass
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  CLUS_1             6              21
  CLUS_2             4              26
  CLUS_3             2              15
D11V5, multiclass
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  CLUS_1             8              26
  CLUS_2             6              41
  CLUS_3             2              29
D11V6, multiclass
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  CLUS_1             6              25
  CLUS_2             4              23
  CLUS_3             3              30
  CLUS_4             3              18
D11V7, multiclass
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  CLUS_1             5              30
  CLUS_2            10              52
  CLUS_3             6              47
  CLUS_4             6              22
D11V8, multiclass
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  CLUS_1             9              55
  CLUS_2             3              27
  CLUS_3            15              69
D11V9, multiclass
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  CLUS_1            15              90
  CLUS_2             5              22
  CLUS_3             3              27
D11V10, multiclass
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  CLUS_1             3              36
  CLUS_2            17              72
  CLUS_3             3              31

Clustering(12) Variable = LRRC4C MUTATION ANALYSIS
D12V1, multiclass
        clus
vv       LRRC4C MUTATED LRRC4C WILD-TYPE
  CLUS_1              0               38
  CLUS_2              3               43
  CLUS_3              2               13
  CLUS_4              5               17
D12V2, multiclass
        clus
vv       LRRC4C MUTATED LRRC4C WILD-TYPE
  CLUS_1              3                8
  CLUS_2              4               46
  CLUS_3              3               57
D12V3, multiclass
        clus
vv       LRRC4C MUTATED LRRC4C WILD-TYPE
  CLUS_1              3               53
  CLUS_2              8               59
  CLUS_3              6               49
D12V4, multiclass
        clus
vv       LRRC4C MUTATED LRRC4C WILD-TYPE
  CLUS_1              3               24
  CLUS_2              5               25
  CLUS_3              2               15
D12V5, multiclass
        clus
vv       LRRC4C MUTATED LRRC4C WILD-TYPE
  CLUS_1              5               29
  CLUS_2              4               43
  CLUS_3              4               27
D12V6, multiclass
        clus
vv       LRRC4C MUTATED LRRC4C WILD-TYPE
  CLUS_1              4               27
  CLUS_2              3               24
  CLUS_3              4               29
  CLUS_4              2               19
D12V7, multiclass
        clus
vv       LRRC4C MUTATED LRRC4C WILD-TYPE
  CLUS_1              3               32
  CLUS_2              7               55
  CLUS_3              4               49
  CLUS_4              3               25
D12V8, multiclass
        clus
vv       LRRC4C MUTATED LRRC4C WILD-TYPE
  CLUS_1              7               57
  CLUS_2              2               28
  CLUS_3              8               76
D12V9, multiclass
        clus
vv       LRRC4C MUTATED LRRC4C WILD-TYPE
  CLUS_1              9               96
  CLUS_2              3               24
  CLUS_3              5               25
D12V10, multiclass
        clus
vv       LRRC4C MUTATED LRRC4C WILD-TYPE
  CLUS_1              7               32
  CLUS_2              5               84
  CLUS_3              5               29

Clustering(13) Variable = ZBBX MUTATION ANALYSIS
D13V1, multiclass
        clus
vv       ZBBX MUTATED ZBBX WILD-TYPE
  CLUS_1            1             37
  CLUS_2            4             42
  CLUS_3            1             14
  CLUS_4            3             19
D13V2, multiclass
        clus
vv       ZBBX MUTATED ZBBX WILD-TYPE
  CLUS_1            2              9
  CLUS_2            3             47
  CLUS_3            4             56
D13V3, multiclass
        clus
vv       ZBBX MUTATED ZBBX WILD-TYPE
  CLUS_1            5             51
  CLUS_2            7             60
  CLUS_3            5             50
D13V4, multiclass
        clus
vv       ZBBX MUTATED ZBBX WILD-TYPE
  CLUS_1            2             25
  CLUS_2            4             26
  CLUS_3            3             14
D13V5, multiclass
        clus
vv       ZBBX MUTATED ZBBX WILD-TYPE
  CLUS_1            5             29
  CLUS_2            5             42
  CLUS_3            2             29
D13V6, multiclass
        clus
vv       ZBBX MUTATED ZBBX WILD-TYPE
  CLUS_1            5             26
  CLUS_2            3             24
  CLUS_3            2             31
  CLUS_4            2             19
D13V7, multiclass
        clus
vv       ZBBX MUTATED ZBBX WILD-TYPE
  CLUS_1            2             33
  CLUS_2            6             56
  CLUS_3            4             49
  CLUS_4            5             23
D13V8, multiclass
        clus
vv       ZBBX MUTATED ZBBX WILD-TYPE
  CLUS_1            6             58
  CLUS_2            3             27
  CLUS_3            8             76
D13V9, multiclass
        clus
vv       ZBBX MUTATED ZBBX WILD-TYPE
  CLUS_1            8             97
  CLUS_2            3             24
  CLUS_3            3             27
D13V10, multiclass
        clus
vv       ZBBX MUTATED ZBBX WILD-TYPE
  CLUS_1            6             33
  CLUS_2            4             85
  CLUS_3            4             30

Clustering(14) Variable = DPPA4 MUTATION ANALYSIS
D14V1, multiclass
        clus
vv       DPPA4 MUTATED DPPA4 WILD-TYPE
  CLUS_1             1              37
  CLUS_2             0              46
  CLUS_3             3              12
  CLUS_4             1              21
D14V2, multiclass
        clus
vv       DPPA4 MUTATED DPPA4 WILD-TYPE
  CLUS_1             1              10
  CLUS_2             0              50
  CLUS_3             4              56
D14V3, multiclass
        clus
vv       DPPA4 MUTATED DPPA4 WILD-TYPE
  CLUS_1             5              51
  CLUS_2             4              63
  CLUS_3             3              52
D14V4, multiclass
        clus
vv       DPPA4 MUTATED DPPA4 WILD-TYPE
  CLUS_1             1              26
  CLUS_2             2              28
  CLUS_3             4              13
D14V5, multiclass
        clus
vv       DPPA4 MUTATED DPPA4 WILD-TYPE
  CLUS_1             2              32
  CLUS_2             5              42
  CLUS_3             2              29
D14V6, multiclass
        clus
vv       DPPA4 MUTATED DPPA4 WILD-TYPE
  CLUS_1             3              28
  CLUS_2             0              27
  CLUS_3             2              31
  CLUS_4             4              17
D14V7, multiclass
        clus
vv       DPPA4 MUTATED DPPA4 WILD-TYPE
  CLUS_1             0              35
  CLUS_2             2              60
  CLUS_3             6              47
  CLUS_4             4              24
D14V8, multiclass
        clus
vv       DPPA4 MUTATED DPPA4 WILD-TYPE
  CLUS_1             2              62
  CLUS_2             2              28
  CLUS_3             8              76
D14V9, multiclass
        clus
vv       DPPA4 MUTATED DPPA4 WILD-TYPE
  CLUS_1             4             101
  CLUS_2             5              22
  CLUS_3             3              27
D14V10, multiclass
        clus
vv       DPPA4 MUTATED DPPA4 WILD-TYPE
  CLUS_1             5              34
  CLUS_2             7              82
  CLUS_3             0              34

Clustering(15) Variable = ASB5 MUTATION ANALYSIS
D15V1, multiclass
        clus
vv       ASB5 MUTATED ASB5 WILD-TYPE
  CLUS_1            1             37
  CLUS_2            4             42
  CLUS_3            1             14
  CLUS_4            3             19
D15V2, multiclass
        clus
vv       ASB5 MUTATED ASB5 WILD-TYPE
  CLUS_1            1             10
  CLUS_2            4             46
  CLUS_3            4             56
D15V3, multiclass
        clus
vv       ASB5 MUTATED ASB5 WILD-TYPE
  CLUS_1            0             56
  CLUS_2            7             60
  CLUS_3            2             53
D15V4, multiclass
[1] "Remove cluster labels:" "ASB5 MUTATED"          
clus
  ASB5 MUTATED ASB5 WILD-TYPE 
             2             72 
    TCGA-18-3417     TCGA-18-4721     TCGA-18-5592     TCGA-18-5595 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-4593     TCGA-22-4599     TCGA-22-4601     TCGA-22-5471 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-5472     TCGA-22-5473     TCGA-22-5474     TCGA-22-5477 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-5478     TCGA-22-5480     TCGA-22-5482     TCGA-22-5485 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-5489     TCGA-22-5491     TCGA-22-5492     TCGA-33-4566 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-33-4582     TCGA-33-4583     TCGA-33-4586     TCGA-33-6737 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-34-5231     TCGA-34-5232     TCGA-34-5234     TCGA-34-5236 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-34-5239     TCGA-34-5240     TCGA-34-5241     TCGA-34-5927 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-34-5928     TCGA-34-5929     TCGA-37-5819     TCGA-39-5019 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-39-5021     TCGA-39-5022     TCGA-39-5024     TCGA-39-5027 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-39-5028     TCGA-39-5029     TCGA-39-5030     TCGA-39-5031 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-39-5035     TCGA-39-5036     TCGA-39-5037     TCGA-39-5039 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-43-5668     TCGA-43-6143     TCGA-43-6647     TCGA-43-6770 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-43-6771     TCGA-46-6025     TCGA-46-6026     TCGA-56-5897 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-56-5898     TCGA-56-6545     TCGA-56-6546     TCGA-60-2709 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-63-5128     TCGA-63-5131     TCGA-63-6202     TCGA-70-6722 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-70-6723     TCGA-85-6175     TCGA-85-6560     TCGA-85-6561 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
D15V5, multiclass
        clus
vv       ASB5 MUTATED ASB5 WILD-TYPE
  CLUS_1            2             32
  CLUS_2            1             46
  CLUS_3            0             31
D15V6, multiclass
        clus
vv       ASB5 MUTATED ASB5 WILD-TYPE
  CLUS_1            1             30
  CLUS_2            1             26
  CLUS_3            1             32
  CLUS_4            0             21
D15V7, multiclass
        clus
vv       ASB5 MUTATED ASB5 WILD-TYPE
  CLUS_1            1             34
  CLUS_2            4             58
  CLUS_3            4             49
  CLUS_4            0             28
D15V8, multiclass
        clus
vv       ASB5 MUTATED ASB5 WILD-TYPE
  CLUS_1            4             60
  CLUS_2            3             27
  CLUS_3            2             82
D15V9, multiclass
        clus
vv       ASB5 MUTATED ASB5 WILD-TYPE
  CLUS_1            7             98
  CLUS_2            0             27
  CLUS_3            0             30
D15V10, multiclass
        clus
vv       ASB5 MUTATED ASB5 WILD-TYPE
  CLUS_1            2             37
  CLUS_2            5             84
  CLUS_3            0             34

Clustering(16) Variable = PDYN MUTATION ANALYSIS
D16V1, multiclass
        clus
vv       PDYN MUTATED PDYN WILD-TYPE
  CLUS_1            3             35
  CLUS_2            0             46
  CLUS_3            0             15
  CLUS_4            2             20
D16V2, multiclass
        clus
vv       PDYN MUTATED PDYN WILD-TYPE
  CLUS_1            1             10
  CLUS_2            0             50
  CLUS_3            4             56
D16V3, multiclass
        clus
vv       PDYN MUTATED PDYN WILD-TYPE
  CLUS_1            4             52
  CLUS_2            1             66
  CLUS_3            5             50
D16V4, multiclass
        clus
vv       PDYN MUTATED PDYN WILD-TYPE
  CLUS_1            3             24
  CLUS_2            1             29
  CLUS_3            1             16
D16V5, multiclass
        clus
vv       PDYN MUTATED PDYN WILD-TYPE
  CLUS_1            1             33
  CLUS_2            7             40
  CLUS_3            0             31
D16V6, multiclass
        clus
vv       PDYN MUTATED PDYN WILD-TYPE
  CLUS_1            2             29
  CLUS_2            0             27
  CLUS_3            4             29
  CLUS_4            2             19
D16V7, multiclass
        clus
vv       PDYN MUTATED PDYN WILD-TYPE
  CLUS_1            3             32
  CLUS_2            1             61
  CLUS_3            5             48
  CLUS_4            1             27
D16V8, multiclass
        clus
vv       PDYN MUTATED PDYN WILD-TYPE
  CLUS_1            1             63
  CLUS_2            4             26
  CLUS_3            5             79
D16V9, multiclass
        clus
vv       PDYN MUTATED PDYN WILD-TYPE
  CLUS_1            5            100
  CLUS_2            3             24
  CLUS_3            1             29
D16V10, multiclass
        clus
vv       PDYN MUTATED PDYN WILD-TYPE
  CLUS_1            3             36
  CLUS_2            5             84
  CLUS_3            1             33

Clustering(17) Variable = REG1B MUTATION ANALYSIS
D17V1, multiclass
        clus
vv       REG1B MUTATED REG1B WILD-TYPE
  CLUS_1             3              35
  CLUS_2             1              45
  CLUS_3             1              14
  CLUS_4             1              21
D17V2, multiclass
        clus
vv       REG1B MUTATED REG1B WILD-TYPE
  CLUS_1             0              11
  CLUS_2             2              48
  CLUS_3             4              56
D17V3, multiclass
        clus
vv       REG1B MUTATED REG1B WILD-TYPE
  CLUS_1             1              55
  CLUS_2             4              63
  CLUS_3             6              49
D17V4, multiclass
        clus
vv       REG1B MUTATED REG1B WILD-TYPE
  CLUS_1             4              23
  CLUS_2             2              28
  CLUS_3             0              17
D17V5, multiclass
        clus
vv       REG1B MUTATED REG1B WILD-TYPE
  CLUS_1             0              34
  CLUS_2             5              42
  CLUS_3             2              29
D17V6, multiclass
        clus
vv       REG1B MUTATED REG1B WILD-TYPE
  CLUS_1             1              30
  CLUS_2             0              27
  CLUS_3             5              28
  CLUS_4             1              20
D17V7, multiclass
        clus
vv       REG1B MUTATED REG1B WILD-TYPE
  CLUS_1             1              34
  CLUS_2             3              59
  CLUS_3             6              47
  CLUS_4             1              27
D17V8, multiclass
        clus
vv       REG1B MUTATED REG1B WILD-TYPE
  CLUS_1             3              61
  CLUS_2             3              27
  CLUS_3             5              79
D17V9, multiclass
        clus
vv       REG1B MUTATED REG1B WILD-TYPE
  CLUS_1             3             102
  CLUS_2             4              23
  CLUS_3             2              28
D17V10, multiclass
        clus
vv       REG1B MUTATED REG1B WILD-TYPE
  CLUS_1             4              35
  CLUS_2             4              85
  CLUS_3             1              33

Clustering(18) Variable = CYP11B1 MUTATION ANALYSIS
D18V1, multiclass
        clus
vv       CYP11B1 MUTATED CYP11B1 WILD-TYPE
  CLUS_1               3                35
  CLUS_2               5                41
  CLUS_3               2                13
  CLUS_4               2                20
D18V2, multiclass
        clus
vv       CYP11B1 MUTATED CYP11B1 WILD-TYPE
  CLUS_1               2                 9
  CLUS_2               5                45
  CLUS_3               5                55
D18V3, multiclass
        clus
vv       CYP11B1 MUTATED CYP11B1 WILD-TYPE
  CLUS_1               4                52
  CLUS_2               5                62
  CLUS_3               6                49
D18V4, multiclass
        clus
vv       CYP11B1 MUTATED CYP11B1 WILD-TYPE
  CLUS_1               3                24
  CLUS_2               1                29
  CLUS_3               0                17
D18V5, multiclass
        clus
vv       CYP11B1 MUTATED CYP11B1 WILD-TYPE
  CLUS_1               5                29
  CLUS_2               2                45
  CLUS_3               2                29
D18V6, multiclass
        clus
vv       CYP11B1 MUTATED CYP11B1 WILD-TYPE
  CLUS_1               4                27
  CLUS_2               4                23
  CLUS_3               1                32
  CLUS_4               0                21
D18V7, multiclass
        clus
vv       CYP11B1 MUTATED CYP11B1 WILD-TYPE
  CLUS_1               2                33
  CLUS_2               4                58
  CLUS_3               5                48
  CLUS_4               4                24
D18V8, multiclass
        clus
vv       CYP11B1 MUTATED CYP11B1 WILD-TYPE
  CLUS_1               4                60
  CLUS_2               0                30
  CLUS_3              11                73
D18V9, multiclass
        clus
vv       CYP11B1 MUTATED CYP11B1 WILD-TYPE
  CLUS_1               9                96
  CLUS_2               1                26
  CLUS_3               3                27
D18V10, multiclass
        clus
vv       CYP11B1 MUTATED CYP11B1 WILD-TYPE
  CLUS_1               4                35
  CLUS_2               6                83
  CLUS_3               3                31

Clustering(19) Variable = CRB1 MUTATION ANALYSIS
D19V1, multiclass
        clus
vv       CRB1 MUTATED CRB1 WILD-TYPE
  CLUS_1            2             36
  CLUS_2            5             41
  CLUS_3            3             12
  CLUS_4            3             19
D19V2, multiclass
        clus
vv       CRB1 MUTATED CRB1 WILD-TYPE
  CLUS_1            2              9
  CLUS_2            5             45
  CLUS_3            6             54
D19V3, multiclass
        clus
vv       CRB1 MUTATED CRB1 WILD-TYPE
  CLUS_1            5             51
  CLUS_2           12             55
  CLUS_3            6             49
D19V4, multiclass
        clus
vv       CRB1 MUTATED CRB1 WILD-TYPE
  CLUS_1            3             24
  CLUS_2            7             23
  CLUS_3            3             14
D19V5, multiclass
        clus
vv       CRB1 MUTATED CRB1 WILD-TYPE
  CLUS_1            4             30
  CLUS_2            8             39
  CLUS_3            5             26
D19V6, multiclass
        clus
vv       CRB1 MUTATED CRB1 WILD-TYPE
  CLUS_1            5             26
  CLUS_2            4             23
  CLUS_3            5             28
  CLUS_4            3             18
D19V7, multiclass
        clus
vv       CRB1 MUTATED CRB1 WILD-TYPE
  CLUS_1            2             33
  CLUS_2           10             52
  CLUS_3            6             47
  CLUS_4            5             23
D19V8, multiclass
        clus
vv       CRB1 MUTATED CRB1 WILD-TYPE
  CLUS_1           10             54
  CLUS_2            5             25
  CLUS_3            8             76
D19V9, multiclass
        clus
vv       CRB1 MUTATED CRB1 WILD-TYPE
  CLUS_1           11             94
  CLUS_2            2             25
  CLUS_3            5             25
D19V10, multiclass
        clus
vv       CRB1 MUTATED CRB1 WILD-TYPE
  CLUS_1            3             36
  CLUS_2            9             80
  CLUS_3            6             28

Clustering(20) Variable = OR6F1 MUTATION ANALYSIS
D20V1, multiclass
        clus
vv       OR6F1 MUTATED OR6F1 WILD-TYPE
  CLUS_1             2              36
  CLUS_2             1              45
  CLUS_3             3              12
  CLUS_4             2              20
D20V2, multiclass
        clus
vv       OR6F1 MUTATED OR6F1 WILD-TYPE
  CLUS_1             3               8
  CLUS_2             1              49
  CLUS_3             4              56
D20V3, multiclass
        clus
vv       OR6F1 MUTATED OR6F1 WILD-TYPE
  CLUS_1             3              53
  CLUS_2             3              64
  CLUS_3             7              48
D20V4, multiclass
        clus
vv       OR6F1 MUTATED OR6F1 WILD-TYPE
  CLUS_1             1              26
  CLUS_2             3              27
  CLUS_3             1              16
D20V5, multiclass
        clus
vv       OR6F1 MUTATED OR6F1 WILD-TYPE
  CLUS_1             4              30
  CLUS_2             4              43
  CLUS_3             1              30
D20V6, multiclass
        clus
vv       OR6F1 MUTATED OR6F1 WILD-TYPE
  CLUS_1             3              28
  CLUS_2             1              26
  CLUS_3             4              29
  CLUS_4             1              20
D20V7, multiclass
        clus
vv       OR6F1 MUTATED OR6F1 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             4              58
  CLUS_3             6              47
  CLUS_4             2              26
D20V8, multiclass
        clus
vv       OR6F1 MUTATED OR6F1 WILD-TYPE
  CLUS_1             4              60
  CLUS_2             1              29
  CLUS_3             8              76
D20V9, multiclass
        clus
vv       OR6F1 MUTATED OR6F1 WILD-TYPE
  CLUS_1            11              94
  CLUS_2             2              25
  CLUS_3             0              30
D20V10, multiclass
        clus
vv       OR6F1 MUTATED OR6F1 WILD-TYPE
  CLUS_1             3              36
  CLUS_2             8              81
  CLUS_3             2              32

Clustering(21) Variable = ESRRG MUTATION ANALYSIS
D21V1, multiclass
        clus
vv       ESRRG MUTATED ESRRG WILD-TYPE
  CLUS_1             5              33
  CLUS_2             0              46
  CLUS_3             0              15
  CLUS_4             3              19
D21V2, multiclass
        clus
vv       ESRRG MUTATED ESRRG WILD-TYPE
  CLUS_1             1              10
  CLUS_2             1              49
  CLUS_3             6              54
D21V3, multiclass
        clus
vv       ESRRG MUTATED ESRRG WILD-TYPE
  CLUS_1             5              51
  CLUS_2             4              63
  CLUS_3             3              52
D21V4, multiclass
        clus
vv       ESRRG MUTATED ESRRG WILD-TYPE
  CLUS_1             3              24
  CLUS_2             2              28
  CLUS_3             1              16
D21V5, multiclass
        clus
vv       ESRRG MUTATED ESRRG WILD-TYPE
  CLUS_1             3              31
  CLUS_2             6              41
  CLUS_3             1              30
D21V6, multiclass
        clus
vv       ESRRG MUTATED ESRRG WILD-TYPE
  CLUS_1             4              27
  CLUS_2             1              26
  CLUS_3             4              29
  CLUS_4             1              20
D21V7, multiclass
        clus
vv       ESRRG MUTATED ESRRG WILD-TYPE
  CLUS_1             3              32
  CLUS_2             3              59
  CLUS_3             4              49
  CLUS_4             2              26
D21V8, multiclass
        clus
vv       ESRRG MUTATED ESRRG WILD-TYPE
  CLUS_1             3              61
  CLUS_2             1              29
  CLUS_3             8              76
D21V9, multiclass
        clus
vv       ESRRG MUTATED ESRRG WILD-TYPE
  CLUS_1            10              95
  CLUS_2             0              27
  CLUS_3             2              28
D21V10, multiclass
        clus
vv       ESRRG MUTATED ESRRG WILD-TYPE
  CLUS_1             3              36
  CLUS_2             7              82
  CLUS_3             2              32

Clustering(22) Variable = OR2T33 MUTATION ANALYSIS
D22V1, multiclass
        clus
vv       OR2T33 MUTATED OR2T33 WILD-TYPE
  CLUS_1              3               35
  CLUS_2              3               43
  CLUS_3              2               13
  CLUS_4              2               20
D22V2, multiclass
        clus
vv       OR2T33 MUTATED OR2T33 WILD-TYPE
  CLUS_1              1               10
  CLUS_2              4               46
  CLUS_3              5               55
D22V3, multiclass
        clus
vv       OR2T33 MUTATED OR2T33 WILD-TYPE
  CLUS_1              3               53
  CLUS_2              7               60
  CLUS_3              4               51
D22V4, multiclass
        clus
vv       OR2T33 MUTATED OR2T33 WILD-TYPE
  CLUS_1              3               24
  CLUS_2              2               28
  CLUS_3              0               17
D22V5, multiclass
        clus
vv       OR2T33 MUTATED OR2T33 WILD-TYPE
  CLUS_1              1               33
  CLUS_2              1               46
  CLUS_3              5               26
D22V6, multiclass
        clus
vv       OR2T33 MUTATED OR2T33 WILD-TYPE
  CLUS_1              2               29
  CLUS_2              4               23
  CLUS_3              1               32
  CLUS_4              0               21
D22V7, multiclass
        clus
vv       OR2T33 MUTATED OR2T33 WILD-TYPE
  CLUS_1              1               34
  CLUS_2              4               58
  CLUS_3              6               47
  CLUS_4              3               25
D22V8, multiclass
        clus
vv       OR2T33 MUTATED OR2T33 WILD-TYPE
  CLUS_1              5               59
  CLUS_2              3               27
  CLUS_3              6               78
D22V9, multiclass
        clus
vv       OR2T33 MUTATED OR2T33 WILD-TYPE
  CLUS_1              7               98
  CLUS_2              3               24
  CLUS_3              3               27
D22V10, multiclass
        clus
vv       OR2T33 MUTATED OR2T33 WILD-TYPE
  CLUS_1              5               34
  CLUS_2              6               83
  CLUS_3              2               32

Clustering(23) Variable = OR2G6 MUTATION ANALYSIS
D23V1, multiclass
        clus
vv       OR2G6 MUTATED OR2G6 WILD-TYPE
  CLUS_1             6              32
  CLUS_2             1              45
  CLUS_3             2              13
  CLUS_4             2              20
D23V2, multiclass
        clus
vv       OR2G6 MUTATED OR2G6 WILD-TYPE
  CLUS_1             2               9
  CLUS_2             2              48
  CLUS_3             7              53
D23V3, multiclass
        clus
vv       OR2G6 MUTATED OR2G6 WILD-TYPE
  CLUS_1             4              52
  CLUS_2             5              62
  CLUS_3             7              48
D23V4, multiclass
        clus
vv       OR2G6 MUTATED OR2G6 WILD-TYPE
  CLUS_1             2              25
  CLUS_2             3              27
  CLUS_3             1              16
D23V5, multiclass
        clus
vv       OR2G6 MUTATED OR2G6 WILD-TYPE
  CLUS_1             2              32
  CLUS_2             4              43
  CLUS_3             2              29
D23V6, multiclass
        clus
vv       OR2G6 MUTATED OR2G6 WILD-TYPE
  CLUS_1             2              29
  CLUS_2             1              26
  CLUS_3             4              29
  CLUS_4             1              20
D23V7, multiclass
        clus
vv       OR2G6 MUTATED OR2G6 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             3              59
  CLUS_3             8              45
  CLUS_4             2              26
D23V8, multiclass
        clus
vv       OR2G6 MUTATED OR2G6 WILD-TYPE
  CLUS_1             4              60
  CLUS_2             5              25
  CLUS_3             7              77
D23V9, multiclass
        clus
vv       OR2G6 MUTATED OR2G6 WILD-TYPE
  CLUS_1            10              95
  CLUS_2             3              24
  CLUS_3             1              29
D23V10, multiclass
        clus
vv       OR2G6 MUTATED OR2G6 WILD-TYPE
  CLUS_1             4              35
  CLUS_2             9              80
  CLUS_3             1              33

Clustering(24) Variable = USP29 MUTATION ANALYSIS
D24V1, multiclass
        clus
vv       USP29 MUTATED USP29 WILD-TYPE
  CLUS_1             6              32
  CLUS_2             4              42
  CLUS_3             1              14
  CLUS_4             2              20
D24V2, multiclass
        clus
vv       USP29 MUTATED USP29 WILD-TYPE
  CLUS_1             2               9
  CLUS_2             4              46
  CLUS_3             7              53
D24V3, multiclass
        clus
vv       USP29 MUTATED USP29 WILD-TYPE
  CLUS_1             5              51
  CLUS_2             8              59
  CLUS_3             4              51
D24V4, multiclass
        clus
vv       USP29 MUTATED USP29 WILD-TYPE
  CLUS_1             2              25
  CLUS_2             2              28
  CLUS_3             1              16
D24V5, multiclass
        clus
vv       USP29 MUTATED USP29 WILD-TYPE
  CLUS_1             4              30
  CLUS_2             4              43
  CLUS_3             2              29
D24V6, multiclass
        clus
vv       USP29 MUTATED USP29 WILD-TYPE
  CLUS_1             3              28
  CLUS_2             2              25
  CLUS_3             3              30
  CLUS_4             2              19
D24V7, multiclass
        clus
vv       USP29 MUTATED USP29 WILD-TYPE
  CLUS_1             4              31
  CLUS_2             5              57
  CLUS_3             6              47
  CLUS_4             2              26
D24V8, multiclass
        clus
vv       USP29 MUTATED USP29 WILD-TYPE
  CLUS_1             5              59
  CLUS_2             3              27
  CLUS_3             9              75
D24V9, multiclass
        clus
vv       USP29 MUTATED USP29 WILD-TYPE
  CLUS_1            10              95
  CLUS_2             2              25
  CLUS_3             4              26
D24V10, multiclass
        clus
vv       USP29 MUTATED USP29 WILD-TYPE
  CLUS_1             5              34
  CLUS_2             8              81
  CLUS_3             3              31

Clustering(25) Variable = REG3A MUTATION ANALYSIS
D25V1, multiclass
        clus
vv       REG3A MUTATED REG3A WILD-TYPE
  CLUS_1             1              37
  CLUS_2             3              43
  CLUS_3             0              15
  CLUS_4             1              21
D25V2, multiclass
        clus
vv       REG3A MUTATED REG3A WILD-TYPE
  CLUS_1             1              10
  CLUS_2             3              47
  CLUS_3             1              59
D25V3, multiclass
        clus
vv       REG3A MUTATED REG3A WILD-TYPE
  CLUS_1             1              55
  CLUS_2             6              61
  CLUS_3             4              51
D25V4, multiclass
        clus
vv       REG3A MUTATED REG3A WILD-TYPE
  CLUS_1             0              27
  CLUS_2             4              26
  CLUS_3             3              14
D25V5, multiclass
        clus
vv       REG3A MUTATED REG3A WILD-TYPE
  CLUS_1             3              31
  CLUS_2             2              45
  CLUS_3             1              30
D25V6, multiclass
        clus
vv       REG3A MUTATED REG3A WILD-TYPE
  CLUS_1             1              30
  CLUS_2             2              25
  CLUS_3             2              31
  CLUS_4             1              20
D25V7, multiclass
        clus
vv       REG3A MUTATED REG3A WILD-TYPE
  CLUS_1             0              35
  CLUS_2             5              57
  CLUS_3             5              48
  CLUS_4             1              27
D25V8, multiclass
        clus
vv       REG3A MUTATED REG3A WILD-TYPE
  CLUS_1             5              59
  CLUS_2             3              27
  CLUS_3             3              81
D25V9, multiclass
        clus
vv       REG3A MUTATED REG3A WILD-TYPE
  CLUS_1             5             100
  CLUS_2             2              25
  CLUS_3             3              27
D25V10, multiclass
        clus
vv       REG3A MUTATED REG3A WILD-TYPE
  CLUS_1             1              38
  CLUS_2             5              84
  CLUS_3             4              30

Clustering(26) Variable = PNLIPRP3 MUTATION ANALYSIS
D26V1, multiclass
        clus
vv       PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE
  CLUS_1                3                 35
  CLUS_2                2                 44
  CLUS_3                0                 15
  CLUS_4                2                 20
D26V2, multiclass
        clus
vv       PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE
  CLUS_1                2                  9
  CLUS_2                3                 47
  CLUS_3                2                 58
D26V3, multiclass
        clus
vv       PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE
  CLUS_1                3                 53
  CLUS_2                2                 65
  CLUS_3                7                 48
D26V4, multiclass
        clus
vv       PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE
  CLUS_1                4                 23
  CLUS_2                2                 28
  CLUS_3                0                 17
D26V5, multiclass
        clus
vv       PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE
  CLUS_1                1                 33
  CLUS_2                5                 42
  CLUS_3                1                 30
D26V6, multiclass
        clus
vv       PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE
  CLUS_1                2                 29
  CLUS_2                0                 27
  CLUS_3                2                 31
  CLUS_4                3                 18
D26V7, multiclass
        clus
vv       PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE
  CLUS_1                1                 34
  CLUS_2                3                 59
  CLUS_3                4                 49
  CLUS_4                4                 24
D26V8, multiclass
        clus
vv       PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE
  CLUS_1                4                 60
  CLUS_2                2                 28
  CLUS_3                6                 78
D26V9, multiclass
        clus
vv       PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE
  CLUS_1                8                 97
  CLUS_2                2                 25
  CLUS_3                2                 28
D26V10, multiclass
        clus
vv       PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                9                 80
  CLUS_3                2                 32

Clustering(27) Variable = MAGEB2 MUTATION ANALYSIS
D27V1, multiclass
        clus
vv       MAGEB2 MUTATED MAGEB2 WILD-TYPE
  CLUS_1              1               37
  CLUS_2              2               44
  CLUS_3              0               15
  CLUS_4              3               19
D27V2, multiclass
        clus
vv       MAGEB2 MUTATED MAGEB2 WILD-TYPE
  CLUS_1              2                9
  CLUS_2              2               48
  CLUS_3              2               58
D27V3, multiclass
        clus
vv       MAGEB2 MUTATED MAGEB2 WILD-TYPE
  CLUS_1              1               55
  CLUS_2              3               64
  CLUS_3              5               50
D27V4, multiclass
        clus
vv       MAGEB2 MUTATED MAGEB2 WILD-TYPE
  CLUS_1              2               25
  CLUS_2              1               29
  CLUS_3              1               16
D27V5, multiclass
        clus
vv       MAGEB2 MUTATED MAGEB2 WILD-TYPE
  CLUS_1              2               32
  CLUS_2              2               45
  CLUS_3              1               30
D27V6, multiclass
        clus
vv       MAGEB2 MUTATED MAGEB2 WILD-TYPE
  CLUS_1              1               30
  CLUS_2              2               25
  CLUS_3              2               31
  CLUS_4              0               21
D27V7, multiclass
        clus
vv       MAGEB2 MUTATED MAGEB2 WILD-TYPE
  CLUS_1              0               35
  CLUS_2              3               59
  CLUS_3              6               47
  CLUS_4              0               28
D27V8, multiclass
        clus
vv       MAGEB2 MUTATED MAGEB2 WILD-TYPE
  CLUS_1              2               62
  CLUS_2              3               27
  CLUS_3              4               80
D27V9, multiclass
        clus
vv       MAGEB2 MUTATED MAGEB2 WILD-TYPE
  CLUS_1              4              101
  CLUS_2              2               25
  CLUS_3              2               28
D27V10, multiclass
        clus
vv       MAGEB2 MUTATED MAGEB2 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              5               84
  CLUS_3              2               32

Clustering(28) Variable = SPHKAP MUTATION ANALYSIS
D28V1, multiclass
        clus
vv       SPHKAP MUTATED SPHKAP WILD-TYPE
  CLUS_1              1               37
  CLUS_2             11               35
  CLUS_3              3               12
  CLUS_4              5               17
D28V2, multiclass
        clus
vv       SPHKAP MUTATED SPHKAP WILD-TYPE
  CLUS_1              5                6
  CLUS_2             11               39
  CLUS_3              4               56
D28V3, multiclass
        clus
vv       SPHKAP MUTATED SPHKAP WILD-TYPE
  CLUS_1              5               51
  CLUS_2             13               54
  CLUS_3              9               46
D28V4, multiclass
        clus
vv       SPHKAP MUTATED SPHKAP WILD-TYPE
  CLUS_1              4               23
  CLUS_2              6               24
  CLUS_3              1               16
D28V5, multiclass
        clus
vv       SPHKAP MUTATED SPHKAP WILD-TYPE
  CLUS_1              6               28
  CLUS_2              6               41
  CLUS_3              4               27
D28V6, multiclass
        clus
vv       SPHKAP MUTATED SPHKAP WILD-TYPE
  CLUS_1              6               25
  CLUS_2              3               24
  CLUS_3              5               28
  CLUS_4              2               19
D28V7, multiclass
        clus
vv       SPHKAP MUTATED SPHKAP WILD-TYPE
  CLUS_1              0               35
  CLUS_2             14               48
  CLUS_3              9               44
  CLUS_4              4               24
D28V8, multiclass
        clus
vv       SPHKAP MUTATED SPHKAP WILD-TYPE
  CLUS_1             13               51
  CLUS_2              5               25
  CLUS_3              9               75
D28V9, multiclass
        clus
vv       SPHKAP MUTATED SPHKAP WILD-TYPE
  CLUS_1             12               93
  CLUS_2              3               24
  CLUS_3              6               24
D28V10, multiclass
        clus
vv       SPHKAP MUTATED SPHKAP WILD-TYPE
  CLUS_1              3               36
  CLUS_2             11               78
  CLUS_3              7               27

Clustering(29) Variable = CFHR4 MUTATION ANALYSIS
D29V1, multiclass
        clus
vv       CFHR4 MUTATED CFHR4 WILD-TYPE
  CLUS_1             5              33
  CLUS_2             3              43
  CLUS_3             0              15
  CLUS_4             1              21
D29V2, multiclass
        clus
vv       CFHR4 MUTATED CFHR4 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             3              47
  CLUS_3             6              54
D29V3, multiclass
        clus
vv       CFHR4 MUTATED CFHR4 WILD-TYPE
  CLUS_1             3              53
  CLUS_2             5              62
  CLUS_3             2              53
D29V4, multiclass
[1] "Remove cluster labels:" "CFHR4 MUTATED"         
clus
  CFHR4 MUTATED CFHR4 WILD-TYPE 
              2              72 
     TCGA-18-3417      TCGA-18-4721      TCGA-18-5592      TCGA-18-5595 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4599      TCGA-22-4601      TCGA-22-5471 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-5472      TCGA-22-5473      TCGA-22-5474      TCGA-22-5477 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-5478      TCGA-22-5480      TCGA-22-5482      TCGA-22-5485 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-33-4566 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-33-4582      TCGA-33-4583      TCGA-33-4586      TCGA-33-6737 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-34-5231      TCGA-34-5232      TCGA-34-5234      TCGA-34-5236 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-34-5239      TCGA-34-5240      TCGA-34-5241      TCGA-34-5927 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-34-5928      TCGA-34-5929      TCGA-37-5819      TCGA-39-5016 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-39-5019      TCGA-39-5021      TCGA-39-5022      TCGA-39-5024 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-39-5028      TCGA-39-5029      TCGA-39-5030      TCGA-39-5031 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-39-5035      TCGA-39-5036      TCGA-39-5037      TCGA-39-5039 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-43-5668      TCGA-43-6143      TCGA-43-6647      TCGA-43-6770 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-43-6771      TCGA-46-6025      TCGA-46-6026      TCGA-56-5897 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-56-5898      TCGA-56-6545      TCGA-56-6546      TCGA-60-2709 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-63-5128      TCGA-63-5131      TCGA-63-6202      TCGA-70-6722 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-70-6723      TCGA-85-6175      TCGA-85-6560      TCGA-85-6561 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
D29V5, multiclass
        clus
vv       CFHR4 MUTATED CFHR4 WILD-TYPE
  CLUS_1             0              34
  CLUS_2             4              43
  CLUS_3             1              30
D29V6, multiclass
        clus
vv       CFHR4 MUTATED CFHR4 WILD-TYPE
  CLUS_1             0              31
  CLUS_2             1              26
  CLUS_3             3              30
  CLUS_4             1              20
D29V7, multiclass
        clus
vv       CFHR4 MUTATED CFHR4 WILD-TYPE
  CLUS_1             3              32
  CLUS_2             4              58
  CLUS_3             1              52
  CLUS_4             2              26
D29V8, multiclass
        clus
vv       CFHR4 MUTATED CFHR4 WILD-TYPE
  CLUS_1             3              61
  CLUS_2             1              29
  CLUS_3             6              78
D29V9, multiclass
        clus
vv       CFHR4 MUTATED CFHR4 WILD-TYPE
  CLUS_1             9              96
  CLUS_2             1              26
  CLUS_3             0              30
D29V10, multiclass
        clus
vv       CFHR4 MUTATED CFHR4 WILD-TYPE
  CLUS_1             4              35
  CLUS_2             6              83
  CLUS_3             0              34

Clustering(30) Variable = CPS1 MUTATION ANALYSIS
D30V1, multiclass
        clus
vv       CPS1 MUTATED CPS1 WILD-TYPE
  CLUS_1            6             32
  CLUS_2            7             39
  CLUS_3            4             11
  CLUS_4            2             20
D30V2, multiclass
        clus
vv       CPS1 MUTATED CPS1 WILD-TYPE
  CLUS_1            2              9
  CLUS_2            7             43
  CLUS_3           10             50
D30V3, multiclass
        clus
vv       CPS1 MUTATED CPS1 WILD-TYPE
  CLUS_1            5             51
  CLUS_2            9             58
  CLUS_3           11             44
D30V4, multiclass
        clus
vv       CPS1 MUTATED CPS1 WILD-TYPE
  CLUS_1            3             24
  CLUS_2            3             27
  CLUS_3            1             16
D30V5, multiclass
        clus
vv       CPS1 MUTATED CPS1 WILD-TYPE
  CLUS_1            4             30
  CLUS_2            8             39
  CLUS_3            3             28
D30V6, multiclass
        clus
vv       CPS1 MUTATED CPS1 WILD-TYPE
  CLUS_1            4             27
  CLUS_2            2             25
  CLUS_3            7             26
  CLUS_4            2             19
D30V7, multiclass
        clus
vv       CPS1 MUTATED CPS1 WILD-TYPE
  CLUS_1            4             31
  CLUS_2            9             53
  CLUS_3            8             45
  CLUS_4            4             24
D30V8, multiclass
        clus
vv       CPS1 MUTATED CPS1 WILD-TYPE
  CLUS_1           10             54
  CLUS_2            5             25
  CLUS_3           10             74
D30V9, multiclass
        clus
vv       CPS1 MUTATED CPS1 WILD-TYPE
  CLUS_1           11             94
  CLUS_2            3             24
  CLUS_3            5             25
D30V10, multiclass
        clus
vv       CPS1 MUTATED CPS1 WILD-TYPE
  CLUS_1            3             36
  CLUS_2           10             79
  CLUS_3            6             28

Clustering(31) Variable = ELTD1 MUTATION ANALYSIS
D31V1, multiclass
        clus
vv       ELTD1 MUTATED ELTD1 WILD-TYPE
  CLUS_1             3              35
  CLUS_2             2              44
  CLUS_3             4              11
  CLUS_4             3              19
D31V2, multiclass
        clus
vv       ELTD1 MUTATED ELTD1 WILD-TYPE
  CLUS_1             1              10
  CLUS_2             3              47
  CLUS_3             8              52
D31V3, multiclass
        clus
vv       ELTD1 MUTATED ELTD1 WILD-TYPE
  CLUS_1            10              46
  CLUS_2             4              63
  CLUS_3             4              51
D31V4, multiclass
        clus
vv       ELTD1 MUTATED ELTD1 WILD-TYPE
  CLUS_1             4              23
  CLUS_2             2              28
  CLUS_3             1              16
D31V5, multiclass
        clus
vv       ELTD1 MUTATED ELTD1 WILD-TYPE
  CLUS_1             4              30
  CLUS_2             6              41
  CLUS_3             1              30
D31V6, multiclass
        clus
vv       ELTD1 MUTATED ELTD1 WILD-TYPE
  CLUS_1             4              27
  CLUS_2             1              26
  CLUS_3             4              29
  CLUS_4             2              19
D31V7, multiclass
        clus
vv       ELTD1 MUTATED ELTD1 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             4              58
  CLUS_3             7              46
  CLUS_4             5              23
D31V8, multiclass
        clus
vv       ELTD1 MUTATED ELTD1 WILD-TYPE
  CLUS_1             4              60
  CLUS_2             3              27
  CLUS_3            11              73
D31V9, multiclass
        clus
vv       ELTD1 MUTATED ELTD1 WILD-TYPE
  CLUS_1             7              98
  CLUS_2             5              22
  CLUS_3             2              28
D31V10, multiclass
        clus
vv       ELTD1 MUTATED ELTD1 WILD-TYPE
  CLUS_1             3              36
  CLUS_2             9              80
  CLUS_3             2              32

Clustering(32) Variable = OR4M2 MUTATION ANALYSIS
D32V1, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             1              37
  CLUS_2             5              41
  CLUS_3             1              14
  CLUS_4             3              19
D32V2, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             2               9
  CLUS_2             6              44
  CLUS_3             2              58
D32V3, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             3              53
  CLUS_2             7              60
  CLUS_3             4              51
D32V4, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             2              25
  CLUS_2             2              28
  CLUS_3             1              16
D32V5, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             3              31
  CLUS_2             2              45
  CLUS_3             5              26
D32V6, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             2              29
  CLUS_2             6              21
  CLUS_3             2              31
  CLUS_4             0              21
D32V7, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             5              57
  CLUS_3             5              48
  CLUS_4             3              25
D32V8, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             5              59
  CLUS_2             3              27
  CLUS_3             6              78
D32V9, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             6              99
  CLUS_2             3              24
  CLUS_3             3              27
D32V10, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             5              34
  CLUS_2             3              86
  CLUS_3             4              30

Clustering(33) Variable = OR51B2 MUTATION ANALYSIS
D33V1, multiclass
        clus
vv       OR51B2 MUTATED OR51B2 WILD-TYPE
  CLUS_1              1               37
  CLUS_2              3               43
  CLUS_3              3               12
  CLUS_4              2               20
D33V2, multiclass
        clus
vv       OR51B2 MUTATED OR51B2 WILD-TYPE
  CLUS_1              2                9
  CLUS_2              4               46
  CLUS_3              3               57
D33V3, multiclass
        clus
vv       OR51B2 MUTATED OR51B2 WILD-TYPE
  CLUS_1              2               54
  CLUS_2              4               63
  CLUS_3              4               51
D33V4, multiclass
[1] "Remove cluster labels:" "OR51B2 MUTATED"        
clus
  OR51B2 MUTATED OR51B2 WILD-TYPE 
               1               73 
      TCGA-18-3417       TCGA-18-4721       TCGA-18-5592       TCGA-18-5595 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4599       TCGA-22-4601       TCGA-22-4613 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-5471       TCGA-22-5472       TCGA-22-5473       TCGA-22-5474 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5485 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-5489       TCGA-22-5491       TCGA-22-5492       TCGA-33-4566 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-33-4582       TCGA-33-4583       TCGA-33-4586       TCGA-33-6737 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-34-5231       TCGA-34-5232       TCGA-34-5234       TCGA-34-5236 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-34-5239       TCGA-34-5240       TCGA-34-5241       TCGA-34-5927 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-34-5928       TCGA-34-5929       TCGA-37-5819       TCGA-39-5016 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-39-5019       TCGA-39-5021       TCGA-39-5022       TCGA-39-5024 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-39-5027       TCGA-39-5028       TCGA-39-5029       TCGA-39-5030 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-39-5031       TCGA-39-5035       TCGA-39-5036       TCGA-39-5037 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-39-5039       TCGA-43-5668       TCGA-43-6143       TCGA-43-6647 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-43-6770       TCGA-43-6771       TCGA-46-6025       TCGA-46-6026 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-56-5897       TCGA-56-5898       TCGA-56-6545       TCGA-56-6546 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-60-2709       TCGA-63-5128       TCGA-63-5131       TCGA-63-6202 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-70-6722       TCGA-70-6723       TCGA-85-6175       TCGA-85-6560 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-85-6561 
"OR51B2 WILD-TYPE" 
D33V5, multiclass
        clus
vv       OR51B2 MUTATED OR51B2 WILD-TYPE
  CLUS_1              3               31
  CLUS_2              0               47
  CLUS_3              2               29
D33V6, multiclass
        clus
vv       OR51B2 MUTATED OR51B2 WILD-TYPE
  CLUS_1              1               30
  CLUS_2              3               24
  CLUS_3              0               33
  CLUS_4              1               20
D33V7, multiclass
        clus
vv       OR51B2 MUTATED OR51B2 WILD-TYPE
  CLUS_1              1               34
  CLUS_2              4               58
  CLUS_3              5               48
  CLUS_4              0               28
D33V8, multiclass
        clus
vv       OR51B2 MUTATED OR51B2 WILD-TYPE
  CLUS_1              5               59
  CLUS_2              2               28
  CLUS_3              3               81
D33V9, multiclass
        clus
vv       OR51B2 MUTATED OR51B2 WILD-TYPE
  CLUS_1              5              100
  CLUS_2              0               27
  CLUS_3              2               28
D33V10, multiclass
        clus
vv       OR51B2 MUTATED OR51B2 WILD-TYPE
  CLUS_1              2               37
  CLUS_2              3               86
  CLUS_3              2               32

Clustering(34) Variable = SLC13A1 MUTATION ANALYSIS
D34V1, multiclass
        clus
vv       SLC13A1 MUTATED SLC13A1 WILD-TYPE
  CLUS_1               2                36
  CLUS_2               2                44
  CLUS_3               2                13
  CLUS_4               2                20
D34V2, multiclass
        clus
vv       SLC13A1 MUTATED SLC13A1 WILD-TYPE
  CLUS_1               0                11
  CLUS_2               3                47
  CLUS_3               5                55
D34V3, multiclass
        clus
vv       SLC13A1 MUTATED SLC13A1 WILD-TYPE
  CLUS_1               2                54
  CLUS_2               8                59
  CLUS_3               2                53
D34V4, multiclass
        clus
vv       SLC13A1 MUTATED SLC13A1 WILD-TYPE
  CLUS_1               2                25
  CLUS_2               2                28
  CLUS_3               0                17
D34V5, multiclass
        clus
vv       SLC13A1 MUTATED SLC13A1 WILD-TYPE
  CLUS_1               1                33
  CLUS_2               4                43
  CLUS_3               1                30
D34V6, multiclass
        clus
vv       SLC13A1 MUTATED SLC13A1 WILD-TYPE
  CLUS_1               0                31
  CLUS_2               2                25
  CLUS_3               3                30
  CLUS_4               1                20
D34V7, multiclass
        clus
vv       SLC13A1 MUTATED SLC13A1 WILD-TYPE
  CLUS_1               2                33
  CLUS_2               4                58
  CLUS_3               2                51
  CLUS_4               4                24
D34V8, multiclass
        clus
vv       SLC13A1 MUTATED SLC13A1 WILD-TYPE
  CLUS_1               6                58
  CLUS_2               0                30
  CLUS_3               6                78
D34V9, multiclass
        clus
vv       SLC13A1 MUTATED SLC13A1 WILD-TYPE
  CLUS_1               7                98
  CLUS_2               2                25
  CLUS_3               1                29
D34V10, multiclass
        clus
vv       SLC13A1 MUTATED SLC13A1 WILD-TYPE
  CLUS_1               2                37
  CLUS_2               6                83
  CLUS_3               2                32

Clustering(35) Variable = TGIF2LX MUTATION ANALYSIS
D35V1, multiclass
        clus
vv       TGIF2LX MUTATED TGIF2LX WILD-TYPE
  CLUS_1               2                36
  CLUS_2               1                45
  CLUS_3               1                14
  CLUS_4               1                21
D35V2, multiclass
        clus
vv       TGIF2LX MUTATED TGIF2LX WILD-TYPE
  CLUS_1               0                11
  CLUS_2               1                49
  CLUS_3               4                56
D35V3, multiclass
        clus
vv       TGIF2LX MUTATED TGIF2LX WILD-TYPE
  CLUS_1               3                53
  CLUS_2               4                63
  CLUS_3               2                53
D35V4, multiclass
        clus
vv       TGIF2LX MUTATED TGIF2LX WILD-TYPE
  CLUS_1               0                27
  CLUS_2               4                26
  CLUS_3               2                15
D35V5, multiclass
        clus
vv       TGIF2LX MUTATED TGIF2LX WILD-TYPE
  CLUS_1               1                33
  CLUS_2               5                42
  CLUS_3               0                31
D35V6, multiclass
        clus
vv       TGIF2LX MUTATED TGIF2LX WILD-TYPE
  CLUS_1               2                29
  CLUS_2               0                27
  CLUS_3               4                29
  CLUS_4               0                21
D35V7, multiclass
        clus
vv       TGIF2LX MUTATED TGIF2LX WILD-TYPE
  CLUS_1               2                33
  CLUS_2               2                60
  CLUS_3               5                48
  CLUS_4               0                28
D35V8, multiclass
        clus
vv       TGIF2LX MUTATED TGIF2LX WILD-TYPE
  CLUS_1               3                61
  CLUS_2               2                28
  CLUS_3               4                80
D35V9, multiclass
        clus
vv       TGIF2LX MUTATED TGIF2LX WILD-TYPE
  CLUS_1               7                98
  CLUS_2               1                26
  CLUS_3               0                30
D35V10, multiclass
        clus
vv       TGIF2LX MUTATED TGIF2LX WILD-TYPE
  CLUS_1               2                37
  CLUS_2               5                84
  CLUS_3               1                33

Clustering(36) Variable = ASCL4 MUTATION ANALYSIS
D36V1, multiclass
        clus
vv       ASCL4 MUTATED ASCL4 WILD-TYPE
  CLUS_1             0              38
  CLUS_2             2              44
  CLUS_3             0              15
  CLUS_4             4              18
D36V2, multiclass
        clus
vv       ASCL4 MUTATED ASCL4 WILD-TYPE
  CLUS_1             2               9
  CLUS_2             2              48
  CLUS_3             2              58
D36V3, multiclass
        clus
vv       ASCL4 MUTATED ASCL4 WILD-TYPE
  CLUS_1             1              55
  CLUS_2             4              63
  CLUS_3             1              54
D36V4, multiclass
        clus
vv       ASCL4 MUTATED ASCL4 WILD-TYPE
  CLUS_1             1              26
  CLUS_2             2              28
  CLUS_3             0              17
D36V5, multiclass
        clus
vv       ASCL4 MUTATED ASCL4 WILD-TYPE
  CLUS_1             2              32
  CLUS_2             1              46
  CLUS_3             1              30
D36V6, multiclass
        clus
vv       ASCL4 MUTATED ASCL4 WILD-TYPE
  CLUS_1             2              29
  CLUS_2             1              26
  CLUS_3             1              32
  CLUS_4             0              21
D36V7, multiclass
        clus
vv       ASCL4 MUTATED ASCL4 WILD-TYPE
  CLUS_1             0              35
  CLUS_2             3              59
  CLUS_3             2              51
  CLUS_4             1              27
D36V8, multiclass
        clus
vv       ASCL4 MUTATED ASCL4 WILD-TYPE
  CLUS_1             3              61
  CLUS_2             2              28
  CLUS_3             1              83
D36V9, multiclass
        clus
vv       ASCL4 MUTATED ASCL4 WILD-TYPE
  CLUS_1             4             101
  CLUS_2             0              27
  CLUS_3             2              28
D36V10, multiclass
        clus
vv       ASCL4 MUTATED ASCL4 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             3              86
  CLUS_3             2              32

Clustering(37) Variable = REG3G MUTATION ANALYSIS
D37V1, multiclass
[1] "Remove cluster labels:" "REG3G MUTATED"         
clus
  REG3G MUTATED REG3G WILD-TYPE 
              2             119 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-21-1070 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-21-1071      TCGA-21-1076      TCGA-21-1077      TCGA-21-1078 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-21-1081      TCGA-22-0944      TCGA-22-1002      TCGA-22-1011 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-1012      TCGA-22-1016      TCGA-22-4591      TCGA-22-4595 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-4613      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-34-2596 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-34-2600      TCGA-34-2608      TCGA-34-5240      TCGA-34-5241 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-37-3783      TCGA-37-3789      TCGA-37-4133      TCGA-37-4135 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-39-5016      TCGA-39-5021      TCGA-39-5029      TCGA-39-5030 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-39-5035      TCGA-39-5036      TCGA-39-5037      TCGA-43-2578 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-46-3765      TCGA-46-3766 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-46-3767      TCGA-46-3768      TCGA-46-3769      TCGA-51-4079 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-51-4080      TCGA-51-4081      TCGA-56-1622      TCGA-60-2698 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2707      TCGA-60-2708      TCGA-60-2710      TCGA-60-2711 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2713      TCGA-60-2715      TCGA-60-2719 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2720      TCGA-60-2721      TCGA-60-2722      TCGA-60-2723 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2724      TCGA-60-2725      TCGA-60-2726      TCGA-63-5128 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-63-5131      TCGA-66-2727      TCGA-66-2734      TCGA-66-2742 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2744      TCGA-66-2754      TCGA-66-2755      TCGA-66-2756 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2757      TCGA-66-2758      TCGA-66-2759      TCGA-66-2763 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2765      TCGA-66-2766      TCGA-66-2767      TCGA-66-2768 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2770      TCGA-66-2771      TCGA-66-2773      TCGA-66-2777 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2778      TCGA-66-2780      TCGA-66-2781      TCGA-66-2782 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2783      TCGA-66-2785      TCGA-66-2786      TCGA-66-2787 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2788      TCGA-66-2789      TCGA-66-2791      TCGA-66-2793 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2794      TCGA-66-2795      TCGA-66-2800 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
D37V2, multiclass
[1] "Remove cluster labels:" "REG3G MUTATED"         
clus
  REG3G MUTATED REG3G WILD-TYPE 
              2             119 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-21-1070 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-21-1071      TCGA-21-1076      TCGA-21-1077      TCGA-21-1078 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-21-1081      TCGA-22-0944      TCGA-22-1002      TCGA-22-1011 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-1012      TCGA-22-1016      TCGA-22-4591      TCGA-22-4595 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-4613      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-34-2596 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-34-2600      TCGA-34-2608      TCGA-34-5240      TCGA-34-5241 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-37-3783      TCGA-37-3789      TCGA-37-4133      TCGA-37-4135 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-39-5016      TCGA-39-5021      TCGA-39-5029      TCGA-39-5030 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-39-5035      TCGA-39-5036      TCGA-39-5037      TCGA-43-2578 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-46-3765      TCGA-46-3766 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-46-3767      TCGA-46-3768      TCGA-46-3769      TCGA-51-4079 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-51-4080      TCGA-51-4081      TCGA-56-1622      TCGA-60-2698 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2707      TCGA-60-2708      TCGA-60-2710      TCGA-60-2711 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2713      TCGA-60-2715      TCGA-60-2719 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2720      TCGA-60-2721      TCGA-60-2722      TCGA-60-2723 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2724      TCGA-60-2725      TCGA-60-2726      TCGA-63-5128 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-63-5131      TCGA-66-2727      TCGA-66-2734      TCGA-66-2742 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2744      TCGA-66-2754      TCGA-66-2755      TCGA-66-2756 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2757      TCGA-66-2758      TCGA-66-2759      TCGA-66-2763 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2765      TCGA-66-2766      TCGA-66-2767      TCGA-66-2768 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2770      TCGA-66-2771      TCGA-66-2773      TCGA-66-2777 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2778      TCGA-66-2780      TCGA-66-2781      TCGA-66-2782 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2783      TCGA-66-2785      TCGA-66-2786      TCGA-66-2787 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2788      TCGA-66-2789      TCGA-66-2791      TCGA-66-2793 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2794      TCGA-66-2795      TCGA-66-2800 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
D37V3, multiclass
        clus
vv       REG3G MUTATED REG3G WILD-TYPE
  CLUS_1             1              55
  CLUS_2             6              61
  CLUS_3             1              54
D37V4, multiclass
        clus
vv       REG3G MUTATED REG3G WILD-TYPE
  CLUS_1             0              27
  CLUS_2             3              27
  CLUS_3             3              14
D37V5, multiclass
        clus
vv       REG3G MUTATED REG3G WILD-TYPE
  CLUS_1             4              30
  CLUS_2             3              44
  CLUS_3             0              31
D37V6, multiclass
        clus
vv       REG3G MUTATED REG3G WILD-TYPE
  CLUS_1             5              26
  CLUS_2             0              27
  CLUS_3             2              31
  CLUS_4             0              21
D37V7, multiclass
        clus
vv       REG3G MUTATED REG3G WILD-TYPE
  CLUS_1             1              34
  CLUS_2             3              59
  CLUS_3             4              49
  CLUS_4             0              28
D37V8, multiclass
        clus
vv       REG3G MUTATED REG3G WILD-TYPE
  CLUS_1             4              60
  CLUS_2             3              27
  CLUS_3             1              83
D37V9, multiclass
        clus
vv       REG3G MUTATED REG3G WILD-TYPE
  CLUS_1             5             100
  CLUS_2             3              24
  CLUS_3             0              30
D37V10, multiclass
        clus
vv       REG3G MUTATED REG3G WILD-TYPE
  CLUS_1             3              36
  CLUS_2             4              85
  CLUS_3             1              33

Clustering(38) Variable = CBLN4 MUTATION ANALYSIS
D38V1, multiclass
[1] "Remove cluster labels:" "CBLN4 MUTATED"         
clus
  CBLN4 MUTATED CBLN4 WILD-TYPE 
              2             119 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3412      TCGA-18-3414      TCGA-18-3415 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-3416      TCGA-18-3417      TCGA-18-3419      TCGA-18-3421 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-4083      TCGA-18-4086      TCGA-21-1070      TCGA-21-1071 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4595      TCGA-22-4599 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-4601      TCGA-22-4604      TCGA-22-4607      TCGA-22-4613 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-33-4532      TCGA-33-4533      TCGA-33-4538      TCGA-33-4547 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-33-4566      TCGA-33-4582      TCGA-34-2596      TCGA-34-2600 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5240      TCGA-34-5241      TCGA-37-3783 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-39-5016      TCGA-39-5021      TCGA-39-5029      TCGA-39-5030 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-39-5035      TCGA-39-5036      TCGA-39-5037      TCGA-43-2578 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-46-3765      TCGA-46-3766 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-46-3767      TCGA-46-3768      TCGA-46-3769      TCGA-51-4079 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-51-4080      TCGA-51-4081      TCGA-56-1622      TCGA-60-2698 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2707      TCGA-60-2708      TCGA-60-2710      TCGA-60-2711 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2713      TCGA-60-2719      TCGA-60-2720 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-63-5128      TCGA-63-5131 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2727      TCGA-66-2734      TCGA-66-2742      TCGA-66-2744 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2754      TCGA-66-2755      TCGA-66-2756      TCGA-66-2757 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2758      TCGA-66-2759      TCGA-66-2763      TCGA-66-2765 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2766      TCGA-66-2767      TCGA-66-2768      TCGA-66-2770 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2771      TCGA-66-2773      TCGA-66-2777      TCGA-66-2778 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2780      TCGA-66-2781      TCGA-66-2782      TCGA-66-2783 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2785      TCGA-66-2786      TCGA-66-2787      TCGA-66-2788 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2789      TCGA-66-2791      TCGA-66-2792      TCGA-66-2793 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2794      TCGA-66-2795      TCGA-66-2800 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
D38V2, multiclass
[1] "Remove cluster labels:" "CBLN4 MUTATED"         
clus
  CBLN4 MUTATED CBLN4 WILD-TYPE 
              2             119 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3412      TCGA-18-3414      TCGA-18-3415 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-3416      TCGA-18-3417      TCGA-18-3419      TCGA-18-3421 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-4083      TCGA-18-4086      TCGA-21-1070      TCGA-21-1071 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4595      TCGA-22-4599 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-4601      TCGA-22-4604      TCGA-22-4607      TCGA-22-4613 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-33-4532      TCGA-33-4533      TCGA-33-4538      TCGA-33-4547 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-33-4566      TCGA-33-4582      TCGA-34-2596      TCGA-34-2600 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5240      TCGA-34-5241      TCGA-37-3783 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-39-5016      TCGA-39-5021      TCGA-39-5029      TCGA-39-5030 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-39-5035      TCGA-39-5036      TCGA-39-5037      TCGA-43-2578 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-46-3765      TCGA-46-3766 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-46-3767      TCGA-46-3768      TCGA-46-3769      TCGA-51-4079 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-51-4080      TCGA-51-4081      TCGA-56-1622      TCGA-60-2698 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2707      TCGA-60-2708      TCGA-60-2710      TCGA-60-2711 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2713      TCGA-60-2719      TCGA-60-2720 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-63-5128      TCGA-63-5131 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2727      TCGA-66-2734      TCGA-66-2742      TCGA-66-2744 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2754      TCGA-66-2755      TCGA-66-2756      TCGA-66-2757 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2758      TCGA-66-2759      TCGA-66-2763      TCGA-66-2765 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2766      TCGA-66-2767      TCGA-66-2768      TCGA-66-2770 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2771      TCGA-66-2773      TCGA-66-2777      TCGA-66-2778 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2780      TCGA-66-2781      TCGA-66-2782      TCGA-66-2783 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2785      TCGA-66-2786      TCGA-66-2787      TCGA-66-2788 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2789      TCGA-66-2791      TCGA-66-2792      TCGA-66-2793 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2794      TCGA-66-2795      TCGA-66-2800 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
D38V3, multiclass
        clus
vv       CBLN4 MUTATED CBLN4 WILD-TYPE
  CLUS_1             2              54
  CLUS_2             2              65
  CLUS_3             1              54
D38V4, multiclass
        clus
vv       CBLN4 MUTATED CBLN4 WILD-TYPE
  CLUS_1             1              26
  CLUS_2             1              29
  CLUS_3             1              16
D38V5, multiclass
        clus
vv       CBLN4 MUTATED CBLN4 WILD-TYPE
  CLUS_1             0              34
  CLUS_2             2              45
  CLUS_3             1              30
D38V6, multiclass
        clus
vv       CBLN4 MUTATED CBLN4 WILD-TYPE
  CLUS_1             0              31
  CLUS_2             0              27
  CLUS_3             1              32
  CLUS_4             2              19
D38V7, multiclass
        clus
vv       CBLN4 MUTATED CBLN4 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             2              60
  CLUS_3             1              52
  CLUS_4             1              27
D38V8, multiclass
        clus
vv       CBLN4 MUTATED CBLN4 WILD-TYPE
  CLUS_1             2              62
  CLUS_2             0              30
  CLUS_3             3              81
D38V9, multiclass
        clus
vv       CBLN4 MUTATED CBLN4 WILD-TYPE
  CLUS_1             3             102
  CLUS_2             1              26
  CLUS_3             0              30
D38V10, multiclass
        clus
vv       CBLN4 MUTATED CBLN4 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             2              87
  CLUS_3             0              34

Clustering(39) Variable = OR10G8 MUTATION ANALYSIS
D39V1, multiclass
        clus
vv       OR10G8 MUTATED OR10G8 WILD-TYPE
  CLUS_1              2               36
  CLUS_2              0               46
  CLUS_3              1               14
  CLUS_4              2               20
D39V2, multiclass
        clus
vv       OR10G8 MUTATED OR10G8 WILD-TYPE
  CLUS_1              1               10
  CLUS_2              0               50
  CLUS_3              4               56
D39V3, multiclass
        clus
vv       OR10G8 MUTATED OR10G8 WILD-TYPE
  CLUS_1              4               52
  CLUS_2              3               64
  CLUS_3              3               52
D39V4, multiclass
        clus
vv       OR10G8 MUTATED OR10G8 WILD-TYPE
  CLUS_1              2               25
  CLUS_2              4               26
  CLUS_3              0               17
D39V5, multiclass
        clus
vv       OR10G8 MUTATED OR10G8 WILD-TYPE
  CLUS_1              2               32
  CLUS_2              2               45
  CLUS_3              1               30
D39V6, multiclass
        clus
vv       OR10G8 MUTATED OR10G8 WILD-TYPE
  CLUS_1              1               30
  CLUS_2              1               26
  CLUS_3              1               32
  CLUS_4              2               19
D39V7, multiclass
        clus
vv       OR10G8 MUTATED OR10G8 WILD-TYPE
  CLUS_1              1               34
  CLUS_2              4               58
  CLUS_3              4               49
  CLUS_4              1               27
D39V8, multiclass
        clus
vv       OR10G8 MUTATED OR10G8 WILD-TYPE
  CLUS_1              4               60
  CLUS_2              3               27
  CLUS_3              3               81
D39V9, multiclass
        clus
vv       OR10G8 MUTATED OR10G8 WILD-TYPE
  CLUS_1              5              100
  CLUS_2              2               25
  CLUS_3              2               28
D39V10, multiclass
        clus
vv       OR10G8 MUTATED OR10G8 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              6               83
  CLUS_3              3               31

Clustering(40) Variable = OR4M1 MUTATION ANALYSIS
D40V1, multiclass
        clus
vv       OR4M1 MUTATED OR4M1 WILD-TYPE
  CLUS_1             3              35
  CLUS_2             3              43
  CLUS_3             1              14
  CLUS_4             0              22
D40V2, multiclass
        clus
vv       OR4M1 MUTATED OR4M1 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             3              47
  CLUS_3             4              56
D40V3, multiclass
        clus
vv       OR4M1 MUTATED OR4M1 WILD-TYPE
  CLUS_1             3              53
  CLUS_2             7              60
  CLUS_3             3              52
D40V4, multiclass
        clus
vv       OR4M1 MUTATED OR4M1 WILD-TYPE
  CLUS_1             1              26
  CLUS_2             2              28
  CLUS_3             3              14
D40V5, multiclass
        clus
vv       OR4M1 MUTATED OR4M1 WILD-TYPE
  CLUS_1             2              32
  CLUS_2             6              41
  CLUS_3             0              31
D40V6, multiclass
        clus
vv       OR4M1 MUTATED OR4M1 WILD-TYPE
  CLUS_1             1              30
  CLUS_2             1              26
  CLUS_3             4              29
  CLUS_4             2              19
D40V7, multiclass
        clus
vv       OR4M1 MUTATED OR4M1 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             4              58
  CLUS_3             6              47
  CLUS_4             2              26
D40V8, multiclass
        clus
vv       OR4M1 MUTATED OR4M1 WILD-TYPE
  CLUS_1             4              60
  CLUS_2             3              27
  CLUS_3             6              78
D40V9, multiclass
        clus
vv       OR4M1 MUTATED OR4M1 WILD-TYPE
  CLUS_1             7              98
  CLUS_2             4              23
  CLUS_3             2              28
D40V10, multiclass
        clus
vv       OR4M1 MUTATED OR4M1 WILD-TYPE
  CLUS_1             4              35
  CLUS_2             7              82
  CLUS_3             2              32

Clustering(41) Variable = OR2T2 MUTATION ANALYSIS
D41V1, multiclass
        clus
vv       OR2T2 MUTATED OR2T2 WILD-TYPE
  CLUS_1             0              38
  CLUS_2             1              45
  CLUS_3             0              15
  CLUS_4             4              18
D41V2, multiclass
        clus
vv       OR2T2 MUTATED OR2T2 WILD-TYPE
  CLUS_1             3               8
  CLUS_2             2              48
  CLUS_3             0              60
D41V3, multiclass
        clus
vv       OR2T2 MUTATED OR2T2 WILD-TYPE
  CLUS_1             2              54
  CLUS_2             4              63
  CLUS_3             1              54
D41V4, multiclass
        clus
vv       OR2T2 MUTATED OR2T2 WILD-TYPE
  CLUS_1             1              26
  CLUS_2             1              29
  CLUS_3             2              15
D41V5, multiclass
        clus
vv       OR2T2 MUTATED OR2T2 WILD-TYPE
  CLUS_1             2              32
  CLUS_2             2              45
  CLUS_3             1              30
D41V6, multiclass
        clus
vv       OR2T2 MUTATED OR2T2 WILD-TYPE
  CLUS_1             3              28
  CLUS_2             1              26
  CLUS_3             0              33
  CLUS_4             1              20
D41V7, multiclass
        clus
vv       OR2T2 MUTATED OR2T2 WILD-TYPE
  CLUS_1             0              35
  CLUS_2             3              59
  CLUS_3             3              50
  CLUS_4             1              27
D41V8, multiclass
        clus
vv       OR2T2 MUTATED OR2T2 WILD-TYPE
  CLUS_1             3              61
  CLUS_2             2              28
  CLUS_3             2              82
D41V9, multiclass
        clus
vv       OR2T2 MUTATED OR2T2 WILD-TYPE
  CLUS_1             4             101
  CLUS_2             1              26
  CLUS_3             1              29
D41V10, multiclass
        clus
vv       OR2T2 MUTATED OR2T2 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             4              85
  CLUS_3             1              33

Clustering(42) Variable = OR2T8 MUTATION ANALYSIS
D42V1, multiclass
        clus
vv       OR2T8 MUTATED OR2T8 WILD-TYPE
  CLUS_1             1              37
  CLUS_2             5              41
  CLUS_3             0              15
  CLUS_4             0              22
D42V2, multiclass
        clus
vv       OR2T8 MUTATED OR2T8 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             5              45
  CLUS_3             1              59
D42V3, multiclass
        clus
vv       OR2T8 MUTATED OR2T8 WILD-TYPE
  CLUS_1             0              56
  CLUS_2             7              60
  CLUS_3             1              54
D42V4, multiclass
        clus
vv       OR2T8 MUTATED OR2T8 WILD-TYPE
  CLUS_1             0              27
  CLUS_2             1              29
  CLUS_3             2              15
D42V5, multiclass
[1] "Remove cluster labels:" "OR2T8 MUTATED"         
clus
  OR2T8 MUTATED OR2T8 WILD-TYPE 
              2             110 
     TCGA-18-4721      TCGA-18-5592      TCGA-18-5595      TCGA-21-1070 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-21-1071      TCGA-21-1076      TCGA-21-1078      TCGA-21-1081 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-21-5784      TCGA-21-5786      TCGA-21-5787      TCGA-22-1011 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-4591      TCGA-22-4607      TCGA-22-5471      TCGA-22-5472 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-5473      TCGA-22-5474      TCGA-22-5477      TCGA-22-5478 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-5480      TCGA-22-5482      TCGA-22-5485      TCGA-22-5489 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-5491      TCGA-22-5492      TCGA-33-4532      TCGA-33-4547 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-33-4566      TCGA-33-4582      TCGA-33-4586      TCGA-33-6737 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-34-2596      TCGA-34-2608      TCGA-34-5231      TCGA-34-5232 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-34-5234      TCGA-34-5236      TCGA-34-5239      TCGA-34-5241 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3789 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-4141      TCGA-39-5016 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-39-5019      TCGA-39-5021      TCGA-39-5022      TCGA-39-5024 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-39-5027      TCGA-39-5028      TCGA-39-5029      TCGA-39-5030 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-39-5031      TCGA-39-5035      TCGA-39-5037      TCGA-43-2578 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-5668      TCGA-43-6143      TCGA-43-6770 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-43-6771      TCGA-46-6025      TCGA-46-6026      TCGA-56-5897 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-56-5898      TCGA-56-6545      TCGA-56-6546      TCGA-60-2698 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2708      TCGA-60-2709      TCGA-60-2710      TCGA-60-2711 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2713      TCGA-60-2719      TCGA-60-2720 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2724      TCGA-60-2725      TCGA-60-2726 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-63-5128      TCGA-63-5131      TCGA-63-6202      TCGA-66-2727 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2758      TCGA-66-2766      TCGA-66-2767      TCGA-66-2768 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2770      TCGA-66-2773      TCGA-66-2777      TCGA-66-2778 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2781      TCGA-66-2782      TCGA-66-2783      TCGA-66-2785 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2788      TCGA-66-2791      TCGA-66-2794      TCGA-66-2795 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2800      TCGA-70-6722      TCGA-70-6723      TCGA-85-6175 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-85-6560      TCGA-85-6561 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
D42V6, multiclass
[1] "Remove cluster labels:" "OR2T8 MUTATED"         
clus
  OR2T8 MUTATED OR2T8 WILD-TYPE 
              2             110 
     TCGA-18-4721      TCGA-18-5592      TCGA-18-5595      TCGA-21-1070 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-21-1071      TCGA-21-1076      TCGA-21-1078      TCGA-21-1081 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-21-5784      TCGA-21-5786      TCGA-21-5787      TCGA-22-1011 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-4591      TCGA-22-4607      TCGA-22-5471      TCGA-22-5472 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-5473      TCGA-22-5474      TCGA-22-5477      TCGA-22-5478 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-5480      TCGA-22-5482      TCGA-22-5485      TCGA-22-5489 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-5491      TCGA-22-5492      TCGA-33-4532      TCGA-33-4547 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-33-4566      TCGA-33-4582      TCGA-33-4586      TCGA-33-6737 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-34-2596      TCGA-34-2608      TCGA-34-5231      TCGA-34-5232 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-34-5234      TCGA-34-5236      TCGA-34-5239      TCGA-34-5241 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3789 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-4141      TCGA-39-5016 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-39-5019      TCGA-39-5021      TCGA-39-5022      TCGA-39-5024 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-39-5027      TCGA-39-5028      TCGA-39-5029      TCGA-39-5030 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-39-5031      TCGA-39-5035      TCGA-39-5037      TCGA-43-2578 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-5668      TCGA-43-6143      TCGA-43-6770 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-43-6771      TCGA-46-6025      TCGA-46-6026      TCGA-56-5897 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-56-5898      TCGA-56-6545      TCGA-56-6546      TCGA-60-2698 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2708      TCGA-60-2709      TCGA-60-2710      TCGA-60-2711 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2713      TCGA-60-2719      TCGA-60-2720 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2724      TCGA-60-2725      TCGA-60-2726 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-63-5128      TCGA-63-5131      TCGA-63-6202      TCGA-66-2727 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2758      TCGA-66-2766      TCGA-66-2767      TCGA-66-2768 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2770      TCGA-66-2773      TCGA-66-2777      TCGA-66-2778 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2781      TCGA-66-2782      TCGA-66-2783      TCGA-66-2785 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2788      TCGA-66-2791      TCGA-66-2794      TCGA-66-2795 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2800      TCGA-70-6722      TCGA-70-6723      TCGA-85-6175 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-85-6560      TCGA-85-6561 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
D42V7, multiclass
        clus
vv       OR2T8 MUTATED OR2T8 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             4              58
  CLUS_3             3              50
  CLUS_4             0              28
D42V8, multiclass
        clus
vv       OR2T8 MUTATED OR2T8 WILD-TYPE
  CLUS_1             4              60
  CLUS_2             1              29
  CLUS_3             3              81
D42V9, multiclass
        clus
vv       OR2T8 MUTATED OR2T8 WILD-TYPE
  CLUS_1             4             101
  CLUS_2             0              27
  CLUS_3             3              27
D42V10, multiclass
        clus
vv       OR2T8 MUTATED OR2T8 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             3              86
  CLUS_3             2              32

Clustering(43) Variable = SPANXN1 MUTATION ANALYSIS
D43V1, multiclass
        clus
vv       SPANXN1 MUTATED SPANXN1 WILD-TYPE
  CLUS_1               1                37
  CLUS_2               2                44
  CLUS_3               1                14
  CLUS_4               0                22
D43V2, multiclass
        clus
vv       SPANXN1 MUTATED SPANXN1 WILD-TYPE
  CLUS_1               0                11
  CLUS_2               2                48
  CLUS_3               2                58
D43V3, multiclass
        clus
vv       SPANXN1 MUTATED SPANXN1 WILD-TYPE
  CLUS_1               2                54
  CLUS_2               1                66
  CLUS_3               2                53
D43V4, multiclass
[1] "Remove cluster labels:" "SPANXN1 MUTATED"       
clus
  SPANXN1 MUTATED SPANXN1 WILD-TYPE 
                1                73 
       TCGA-18-3417        TCGA-18-4721        TCGA-18-5592        TCGA-18-5595 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-4593        TCGA-22-4599        TCGA-22-4601        TCGA-22-4613 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5480        TCGA-22-5482 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-33-6737        TCGA-34-5231        TCGA-34-5234        TCGA-34-5236 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-34-5239        TCGA-34-5240        TCGA-34-5241        TCGA-34-5927 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-34-5928        TCGA-34-5929        TCGA-37-5819        TCGA-39-5016 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5035        TCGA-39-5036        TCGA-39-5037 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-39-5039        TCGA-43-5668        TCGA-43-6143        TCGA-43-6647 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-43-6770        TCGA-43-6771        TCGA-46-6025        TCGA-46-6026 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-56-5897        TCGA-56-5898        TCGA-56-6545        TCGA-56-6546 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-60-2709        TCGA-63-5128        TCGA-63-5131        TCGA-63-6202 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-70-6722        TCGA-70-6723        TCGA-85-6175        TCGA-85-6560 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-85-6561 
"SPANXN1 WILD-TYPE" 
D43V5, multiclass
        clus
vv       SPANXN1 MUTATED SPANXN1 WILD-TYPE
  CLUS_1               2                32
  CLUS_2               2                45
  CLUS_3               0                31
D43V6, multiclass
        clus
vv       SPANXN1 MUTATED SPANXN1 WILD-TYPE
  CLUS_1               1                30
  CLUS_2               1                26
  CLUS_3               2                31
  CLUS_4               0                21
D43V7, multiclass
        clus
vv       SPANXN1 MUTATED SPANXN1 WILD-TYPE
  CLUS_1               2                33
  CLUS_2               2                60
  CLUS_3               1                52
  CLUS_4               0                28
D43V8, multiclass
        clus
vv       SPANXN1 MUTATED SPANXN1 WILD-TYPE
  CLUS_1               2                62
  CLUS_2               1                29
  CLUS_3               2                82
D43V9, multiclass
        clus
vv       SPANXN1 MUTATED SPANXN1 WILD-TYPE
  CLUS_1               2               103
  CLUS_2               1                26
  CLUS_3               0                30
D43V10, multiclass
        clus
vv       SPANXN1 MUTATED SPANXN1 WILD-TYPE
  CLUS_1               2                37
  CLUS_2               1                88
  CLUS_3               0                34

Clustering(44) Variable = C20ORF26 MUTATION ANALYSIS
D44V1, multiclass
        clus
vv       C20ORF26 MUTATED C20ORF26 WILD-TYPE
  CLUS_1                4                 34
  CLUS_2                5                 41
  CLUS_3                2                 13
  CLUS_4                4                 18
D44V2, multiclass
        clus
vv       C20ORF26 MUTATED C20ORF26 WILD-TYPE
  CLUS_1                4                  7
  CLUS_2                5                 45
  CLUS_3                6                 54
D44V3, multiclass
        clus
vv       C20ORF26 MUTATED C20ORF26 WILD-TYPE
  CLUS_1                3                 53
  CLUS_2                6                 61
  CLUS_3               11                 44
D44V4, multiclass
        clus
vv       C20ORF26 MUTATED C20ORF26 WILD-TYPE
  CLUS_1                3                 24
  CLUS_2                2                 28
  CLUS_3                1                 16
D44V5, multiclass
        clus
vv       C20ORF26 MUTATED C20ORF26 WILD-TYPE
  CLUS_1                5                 29
  CLUS_2                3                 44
  CLUS_3                5                 26
D44V6, multiclass
        clus
vv       C20ORF26 MUTATED C20ORF26 WILD-TYPE
  CLUS_1                3                 28
  CLUS_2                5                 22
  CLUS_3                4                 29
  CLUS_4                1                 20
D44V7, multiclass
        clus
vv       C20ORF26 MUTATED C20ORF26 WILD-TYPE
  CLUS_1                1                 34
  CLUS_2                6                 56
  CLUS_3                8                 45
  CLUS_4                5                 23
D44V8, multiclass
        clus
vv       C20ORF26 MUTATED C20ORF26 WILD-TYPE
  CLUS_1                5                 59
  CLUS_2                7                 23
  CLUS_3                8                 76
D44V9, multiclass
        clus
vv       C20ORF26 MUTATED C20ORF26 WILD-TYPE
  CLUS_1               13                 92
  CLUS_2                4                 23
  CLUS_3                1                 29
D44V10, multiclass
        clus
vv       C20ORF26 MUTATED C20ORF26 WILD-TYPE
  CLUS_1                5                 34
  CLUS_2               12                 77
  CLUS_3                1                 33

Clustering(45) Variable = ZEB2 MUTATION ANALYSIS
D45V1, multiclass
        clus
vv       ZEB2 MUTATED ZEB2 WILD-TYPE
  CLUS_1            3             35
  CLUS_2            3             43
  CLUS_3            1             14
  CLUS_4            0             22
D45V2, multiclass
        clus
vv       ZEB2 MUTATED ZEB2 WILD-TYPE
  CLUS_1            0             11
  CLUS_2            3             47
  CLUS_3            4             56
D45V3, multiclass
        clus
vv       ZEB2 MUTATED ZEB2 WILD-TYPE
  CLUS_1            6             50
  CLUS_2            7             60
  CLUS_3            2             53
D45V4, multiclass
        clus
vv       ZEB2 MUTATED ZEB2 WILD-TYPE
  CLUS_1            3             24
  CLUS_2            5             25
  CLUS_3            1             16
D45V5, multiclass
        clus
vv       ZEB2 MUTATED ZEB2 WILD-TYPE
  CLUS_1            5             29
  CLUS_2            3             44
  CLUS_3            2             29
D45V6, multiclass
        clus
vv       ZEB2 MUTATED ZEB2 WILD-TYPE
  CLUS_1            6             25
  CLUS_2            1             26
  CLUS_3            2             31
  CLUS_4            1             20
D45V7, multiclass
        clus
vv       ZEB2 MUTATED ZEB2 WILD-TYPE
  CLUS_1            3             32
  CLUS_2            5             57
  CLUS_3            5             48
  CLUS_4            2             26
D45V8, multiclass
        clus
vv       ZEB2 MUTATED ZEB2 WILD-TYPE
  CLUS_1            5             59
  CLUS_2            2             28
  CLUS_3            8             76
D45V9, multiclass
        clus
vv       ZEB2 MUTATED ZEB2 WILD-TYPE
  CLUS_1            8             97
  CLUS_2            2             25
  CLUS_3            2             28
D45V10, multiclass
        clus
vv       ZEB2 MUTATED ZEB2 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            7             82
  CLUS_3            4             30

Clustering(46) Variable = PSG6 MUTATION ANALYSIS
D46V1, multiclass
        clus
vv       PSG6 MUTATED PSG6 WILD-TYPE
  CLUS_1            2             36
  CLUS_2            3             43
  CLUS_3            0             15
  CLUS_4            2             20
D46V2, multiclass
        clus
vv       PSG6 MUTATED PSG6 WILD-TYPE
  CLUS_1            2              9
  CLUS_2            3             47
  CLUS_3            2             58
D46V3, multiclass
        clus
vv       PSG6 MUTATED PSG6 WILD-TYPE
  CLUS_1            4             52
  CLUS_2            4             63
  CLUS_3            1             54
D46V4, multiclass
        clus
vv       PSG6 MUTATED PSG6 WILD-TYPE
  CLUS_1            2             25
  CLUS_2            1             29
  CLUS_3            1             16
D46V5, multiclass
        clus
vv       PSG6 MUTATED PSG6 WILD-TYPE
  CLUS_1            3             31
  CLUS_2            2             45
  CLUS_3            1             30
D46V6, multiclass
        clus
vv       PSG6 MUTATED PSG6 WILD-TYPE
  CLUS_1            3             28
  CLUS_2            0             27
  CLUS_3            2             31
  CLUS_4            1             20
D46V7, multiclass
        clus
vv       PSG6 MUTATED PSG6 WILD-TYPE
  CLUS_1            2             33
  CLUS_2            4             58
  CLUS_3            2             51
  CLUS_4            1             27
D46V8, multiclass
        clus
vv       PSG6 MUTATED PSG6 WILD-TYPE
  CLUS_1            4             60
  CLUS_2            2             28
  CLUS_3            3             81
D46V9, multiclass
        clus
vv       PSG6 MUTATED PSG6 WILD-TYPE
  CLUS_1            6             99
  CLUS_2            0             27
  CLUS_3            2             28
D46V10, multiclass
        clus
vv       PSG6 MUTATED PSG6 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            5             84
  CLUS_3            2             32

Clustering(47) Variable = REG1A MUTATION ANALYSIS
D47V1, multiclass
        clus
vv       REG1A MUTATED REG1A WILD-TYPE
  CLUS_1             2              36
  CLUS_2             2              44
  CLUS_3             2              13
  CLUS_4             1              21
D47V2, multiclass
        clus
vv       REG1A MUTATED REG1A WILD-TYPE
  CLUS_1             0              11
  CLUS_2             2              48
  CLUS_3             5              55
D47V3, multiclass
        clus
vv       REG1A MUTATED REG1A WILD-TYPE
  CLUS_1             3              53
  CLUS_2             5              62
  CLUS_3             3              52
D47V4, multiclass
        clus
vv       REG1A MUTATED REG1A WILD-TYPE
  CLUS_1             1              26
  CLUS_2             3              27
  CLUS_3             1              16
D47V5, multiclass
        clus
vv       REG1A MUTATED REG1A WILD-TYPE
  CLUS_1             2              32
  CLUS_2             3              44
  CLUS_3             2              29
D47V6, multiclass
        clus
vv       REG1A MUTATED REG1A WILD-TYPE
  CLUS_1             1              30
  CLUS_2             2              25
  CLUS_3             2              31
  CLUS_4             2              19
D47V7, multiclass
        clus
vv       REG1A MUTATED REG1A WILD-TYPE
  CLUS_1             2              33
  CLUS_2             3              59
  CLUS_3             4              49
  CLUS_4             2              26
D47V8, multiclass
        clus
vv       REG1A MUTATED REG1A WILD-TYPE
  CLUS_1             3              61
  CLUS_2             2              28
  CLUS_3             6              78
D47V9, multiclass
        clus
vv       REG1A MUTATED REG1A WILD-TYPE
  CLUS_1             6              99
  CLUS_2             3              24
  CLUS_3             1              29
D47V10, multiclass
        clus
vv       REG1A MUTATED REG1A WILD-TYPE
  CLUS_1             4              35
  CLUS_2             5              84
  CLUS_3             1              33

Clustering(48) Variable = CLSTN2 MUTATION ANALYSIS
D48V1, multiclass
        clus
vv       CLSTN2 MUTATED CLSTN2 WILD-TYPE
  CLUS_1              3               35
  CLUS_2              3               43
  CLUS_3              2               13
  CLUS_4              3               19
D48V2, multiclass
        clus
vv       CLSTN2 MUTATED CLSTN2 WILD-TYPE
  CLUS_1              3                8
  CLUS_2              3               47
  CLUS_3              5               55
D48V3, multiclass
        clus
vv       CLSTN2 MUTATED CLSTN2 WILD-TYPE
  CLUS_1              5               51
  CLUS_2              6               61
  CLUS_3              6               49
D48V4, multiclass
        clus
vv       CLSTN2 MUTATED CLSTN2 WILD-TYPE
  CLUS_1              3               24
  CLUS_2              2               28
  CLUS_3              1               16
D48V5, multiclass
        clus
vv       CLSTN2 MUTATED CLSTN2 WILD-TYPE
  CLUS_1              3               31
  CLUS_2              3               44
  CLUS_3              2               29
D48V6, multiclass
        clus
vv       CLSTN2 MUTATED CLSTN2 WILD-TYPE
  CLUS_1              4               27
  CLUS_2              1               26
  CLUS_3              2               31
  CLUS_4              1               20
D48V7, multiclass
        clus
vv       CLSTN2 MUTATED CLSTN2 WILD-TYPE
  CLUS_1              3               32
  CLUS_2              5               57
  CLUS_3              7               46
  CLUS_4              2               26
D48V8, multiclass
        clus
vv       CLSTN2 MUTATED CLSTN2 WILD-TYPE
  CLUS_1              5               59
  CLUS_2              4               26
  CLUS_3              8               76
D48V9, multiclass
        clus
vv       CLSTN2 MUTATED CLSTN2 WILD-TYPE
  CLUS_1             11               94
  CLUS_2              2               25
  CLUS_3              3               27
D48V10, multiclass
        clus
vv       CLSTN2 MUTATED CLSTN2 WILD-TYPE
  CLUS_1              4               35
  CLUS_2              8               81
  CLUS_3              4               30

Clustering(49) Variable = MTNR1B MUTATION ANALYSIS
D49V1, multiclass
        clus
vv       MTNR1B MUTATED MTNR1B WILD-TYPE
  CLUS_1              3               35
  CLUS_2              2               44
  CLUS_3              2               13
  CLUS_4              1               21
D49V2, multiclass
        clus
vv       MTNR1B MUTATED MTNR1B WILD-TYPE
  CLUS_1              1               10
  CLUS_2              2               48
  CLUS_3              5               55
D49V3, multiclass
        clus
vv       MTNR1B MUTATED MTNR1B WILD-TYPE
  CLUS_1              3               53
  CLUS_2              3               64
  CLUS_3              4               51
D49V4, multiclass
        clus
vv       MTNR1B MUTATED MTNR1B WILD-TYPE
  CLUS_1              1               26
  CLUS_2              1               29
  CLUS_3              1               16
D49V5, multiclass
        clus
vv       MTNR1B MUTATED MTNR1B WILD-TYPE
  CLUS_1              2               32
  CLUS_2              4               43
  CLUS_3              0               31
D49V6, multiclass
        clus
vv       MTNR1B MUTATED MTNR1B WILD-TYPE
  CLUS_1              2               29
  CLUS_2              0               27
  CLUS_3              4               29
  CLUS_4              0               21
D49V7, multiclass
        clus
vv       MTNR1B MUTATED MTNR1B WILD-TYPE
  CLUS_1              3               32
  CLUS_2              2               60
  CLUS_3              3               50
  CLUS_4              2               26
D49V8, multiclass
        clus
vv       MTNR1B MUTATED MTNR1B WILD-TYPE
  CLUS_1              3               61
  CLUS_2              2               28
  CLUS_3              5               79
D49V9, multiclass
        clus
vv       MTNR1B MUTATED MTNR1B WILD-TYPE
  CLUS_1              6               99
  CLUS_2              0               27
  CLUS_3              1               29
D49V10, multiclass
        clus
vv       MTNR1B MUTATED MTNR1B WILD-TYPE
  CLUS_1              2               37
  CLUS_2              3               86
  CLUS_3              2               32

Clustering(50) Variable = RB1 MUTATION ANALYSIS
D50V1, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           2            36
  CLUS_2           5            41
  CLUS_3           0            15
  CLUS_4           3            19
D50V2, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           3             8
  CLUS_2           5            45
  CLUS_3           2            58
D50V3, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           2            54
  CLUS_2           5            62
  CLUS_3           5            50
D50V4, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           0            27
  CLUS_2           4            26
  CLUS_3           1            16
D50V5, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           3            31
  CLUS_2           2            45
  CLUS_3           1            30
D50V6, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           1            30
  CLUS_2           3            24
  CLUS_3           2            31
  CLUS_4           0            21
D50V7, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           1            34
  CLUS_2           4            58
  CLUS_3           4            49
  CLUS_4           3            25
D50V8, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           4            60
  CLUS_2           4            26
  CLUS_3           4            80
D50V9, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           9            96
  CLUS_2           1            26
  CLUS_3           2            28
D50V10, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           4            35
  CLUS_2           6            83
  CLUS_3           2            32

Clustering(51) Variable = ZNF567 MUTATION ANALYSIS
D51V1, multiclass
[1] "Remove cluster labels:" "ZNF567 MUTATED"        
clus
  ZNF567 MUTATED ZNF567 WILD-TYPE 
               2              119 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-21-1070 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-21-1071       TCGA-21-1076       TCGA-21-1077       TCGA-21-1078 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-21-1081       TCGA-22-0944       TCGA-22-1002       TCGA-22-1011 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-1012       TCGA-22-1016       TCGA-22-4595       TCGA-22-4599 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-4601       TCGA-22-4604       TCGA-22-4607       TCGA-22-4613 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-33-4532       TCGA-33-4533       TCGA-33-4538       TCGA-33-4547 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-33-4566       TCGA-33-4582       TCGA-34-2596       TCGA-34-2600 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5240       TCGA-34-5241       TCGA-37-3783 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5016       TCGA-39-5021       TCGA-39-5029       TCGA-39-5035 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-43-2578       TCGA-43-3394 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-43-3920       TCGA-46-3765       TCGA-46-3766       TCGA-46-3767 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-46-3768       TCGA-46-3769       TCGA-51-4079       TCGA-51-4080 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-60-2698       TCGA-60-2707 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2708       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-63-5128       TCGA-63-5131 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2727       TCGA-66-2734       TCGA-66-2742       TCGA-66-2744 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2754       TCGA-66-2755       TCGA-66-2756       TCGA-66-2757 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2758       TCGA-66-2759       TCGA-66-2763       TCGA-66-2765 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2766       TCGA-66-2767       TCGA-66-2768       TCGA-66-2770 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2771       TCGA-66-2773       TCGA-66-2777       TCGA-66-2778 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2780       TCGA-66-2781       TCGA-66-2782       TCGA-66-2783 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2785       TCGA-66-2786       TCGA-66-2787       TCGA-66-2788 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2789       TCGA-66-2791       TCGA-66-2792       TCGA-66-2793 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2794       TCGA-66-2795       TCGA-66-2800 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
D51V2, multiclass
[1] "Remove cluster labels:" "ZNF567 MUTATED"        
clus
  ZNF567 MUTATED ZNF567 WILD-TYPE 
               2              119 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-21-1070 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-21-1071       TCGA-21-1076       TCGA-21-1077       TCGA-21-1078 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-21-1081       TCGA-22-0944       TCGA-22-1002       TCGA-22-1011 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-1012       TCGA-22-1016       TCGA-22-4595       TCGA-22-4599 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-4601       TCGA-22-4604       TCGA-22-4607       TCGA-22-4613 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-33-4532       TCGA-33-4533       TCGA-33-4538       TCGA-33-4547 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-33-4566       TCGA-33-4582       TCGA-34-2596       TCGA-34-2600 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5240       TCGA-34-5241       TCGA-37-3783 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5016       TCGA-39-5021       TCGA-39-5029       TCGA-39-5035 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-43-2578       TCGA-43-3394 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-43-3920       TCGA-46-3765       TCGA-46-3766       TCGA-46-3767 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-46-3768       TCGA-46-3769       TCGA-51-4079       TCGA-51-4080 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-60-2698       TCGA-60-2707 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2708       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-63-5128       TCGA-63-5131 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2727       TCGA-66-2734       TCGA-66-2742       TCGA-66-2744 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2754       TCGA-66-2755       TCGA-66-2756       TCGA-66-2757 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2758       TCGA-66-2759       TCGA-66-2763       TCGA-66-2765 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2766       TCGA-66-2767       TCGA-66-2768       TCGA-66-2770 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2771       TCGA-66-2773       TCGA-66-2777       TCGA-66-2778 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2780       TCGA-66-2781       TCGA-66-2782       TCGA-66-2783 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2785       TCGA-66-2786       TCGA-66-2787       TCGA-66-2788 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2789       TCGA-66-2791       TCGA-66-2792       TCGA-66-2793 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2794       TCGA-66-2795       TCGA-66-2800 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
D51V3, multiclass
        clus
vv       ZNF567 MUTATED ZNF567 WILD-TYPE
  CLUS_1              2               54
  CLUS_2              0               67
  CLUS_3              1               54
D51V4, multiclass
[1] "Remove cluster labels:" "ZNF567 MUTATED"        
clus
  ZNF567 MUTATED ZNF567 WILD-TYPE 
               2               72 
      TCGA-18-3417       TCGA-18-4721       TCGA-18-5592       TCGA-18-5595 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4599       TCGA-22-4601       TCGA-22-4613 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5471       TCGA-22-5472       TCGA-22-5473       TCGA-22-5474 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5482 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-33-4566       TCGA-33-4582       TCGA-33-4583       TCGA-33-4586 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-33-6737       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-5819 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5016       TCGA-39-5019       TCGA-39-5021       TCGA-39-5022 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5027       TCGA-39-5028       TCGA-39-5029       TCGA-39-5031 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5035       TCGA-39-5036       TCGA-39-5037       TCGA-39-5039 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-43-5668       TCGA-43-6143       TCGA-43-6647       TCGA-43-6770 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-43-6771       TCGA-46-6025       TCGA-46-6026       TCGA-56-5897 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-56-5898       TCGA-56-6545       TCGA-56-6546       TCGA-60-2709 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-63-5128       TCGA-63-5131       TCGA-63-6202       TCGA-70-6722 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-70-6723       TCGA-85-6175       TCGA-85-6560       TCGA-85-6561 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
D51V5, multiclass
        clus
vv       ZNF567 MUTATED ZNF567 WILD-TYPE
  CLUS_1              0               34
  CLUS_2              1               46
  CLUS_3              2               29
D51V6, multiclass
        clus
vv       ZNF567 MUTATED ZNF567 WILD-TYPE
  CLUS_1              2               29
  CLUS_2              1               26
  CLUS_3              0               33
  CLUS_4              0               21
D51V7, multiclass
        clus
vv       ZNF567 MUTATED ZNF567 WILD-TYPE
  CLUS_1              1               34
  CLUS_2              0               62
  CLUS_3              1               52
  CLUS_4              1               27
D51V8, multiclass
        clus
vv       ZNF567 MUTATED ZNF567 WILD-TYPE
  CLUS_1              0               64
  CLUS_2              2               28
  CLUS_3              1               83
D51V9, multiclass
        clus
vv       ZNF567 MUTATED ZNF567 WILD-TYPE
  CLUS_1              2              103
  CLUS_2              1               26
  CLUS_3              0               30
D51V10, multiclass
        clus
vv       ZNF567 MUTATED ZNF567 WILD-TYPE
  CLUS_1              2               37
  CLUS_2              1               88
  CLUS_3              0               34

Clustering(52) Variable = OR2A5 MUTATION ANALYSIS
D52V1, multiclass
        clus
vv       OR2A5 MUTATED OR2A5 WILD-TYPE
  CLUS_1             0              38
  CLUS_2             3              43
  CLUS_3             1              14
  CLUS_4             1              21
D52V2, multiclass
        clus
vv       OR2A5 MUTATED OR2A5 WILD-TYPE
  CLUS_1             1              10
  CLUS_2             3              47
  CLUS_3             1              59
D52V3, multiclass
        clus
vv       OR2A5 MUTATED OR2A5 WILD-TYPE
  CLUS_1             3              53
  CLUS_2             2              65
  CLUS_3             3              52
D52V4, multiclass
        clus
vv       OR2A5 MUTATED OR2A5 WILD-TYPE
  CLUS_1             2              25
  CLUS_2             1              29
  CLUS_3             1              16
D52V5, multiclass
        clus
vv       OR2A5 MUTATED OR2A5 WILD-TYPE
  CLUS_1             5              29
  CLUS_2             0              47
  CLUS_3             0              31
D52V6, multiclass
        clus
vv       OR2A5 MUTATED OR2A5 WILD-TYPE
  CLUS_1             4              27
  CLUS_2             1              26
  CLUS_3             0              33
  CLUS_4             0              21
D52V7, multiclass
        clus
vv       OR2A5 MUTATED OR2A5 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             4              58
  CLUS_3             3              50
  CLUS_4             0              28
D52V8, multiclass
        clus
vv       OR2A5 MUTATED OR2A5 WILD-TYPE
  CLUS_1             4              60
  CLUS_2             2              28
  CLUS_3             2              82
D52V9, multiclass
        clus
vv       OR2A5 MUTATED OR2A5 WILD-TYPE
  CLUS_1             2             103
  CLUS_2             2              25
  CLUS_3             2              28
D52V10, multiclass
        clus
vv       OR2A5 MUTATED OR2A5 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             3              86
  CLUS_3             2              32

Clustering(53) Variable = PARK2 MUTATION ANALYSIS
D53V1, multiclass
        clus
vv       PARK2 MUTATED PARK2 WILD-TYPE
  CLUS_1             2              36
  CLUS_2             1              45
  CLUS_3             2              13
  CLUS_4             3              19
D53V2, multiclass
        clus
vv       PARK2 MUTATED PARK2 WILD-TYPE
  CLUS_1             2               9
  CLUS_2             2              48
  CLUS_3             4              56
D53V3, multiclass
        clus
vv       PARK2 MUTATED PARK2 WILD-TYPE
  CLUS_1             1              55
  CLUS_2             4              63
  CLUS_3             5              50
D53V4, multiclass
[1] "Remove cluster labels:" "PARK2 MUTATED"         
clus
  PARK2 MUTATED PARK2 WILD-TYPE 
              2              72 
     TCGA-18-3417      TCGA-18-4721      TCGA-18-5592      TCGA-18-5595 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-22-4599 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-4601      TCGA-22-4613      TCGA-22-5471      TCGA-22-5472 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-5473      TCGA-22-5474      TCGA-22-5477      TCGA-22-5478 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-5480      TCGA-22-5482      TCGA-22-5485      TCGA-22-5489 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-5491      TCGA-22-5492      TCGA-33-4566      TCGA-33-4582 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-33-4583      TCGA-33-4586      TCGA-33-6737      TCGA-34-5231 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-34-5232      TCGA-34-5234      TCGA-34-5236      TCGA-34-5239 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-34-5240      TCGA-34-5241      TCGA-34-5927      TCGA-34-5928 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-34-5929      TCGA-37-5819      TCGA-39-5016      TCGA-39-5019 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-39-5021      TCGA-39-5022      TCGA-39-5024      TCGA-39-5027 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-39-5028      TCGA-39-5029      TCGA-39-5030      TCGA-39-5031 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-39-5035      TCGA-39-5036      TCGA-39-5037      TCGA-39-5039 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-43-5668      TCGA-43-6143      TCGA-43-6647      TCGA-43-6770 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-43-6771      TCGA-46-6025      TCGA-46-6026      TCGA-56-5897 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-56-5898      TCGA-56-6545      TCGA-56-6546      TCGA-60-2709 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-63-5128      TCGA-63-5131      TCGA-63-6202      TCGA-70-6722 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-70-6723      TCGA-85-6175      TCGA-85-6560      TCGA-85-6561 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
D53V5, multiclass
        clus
vv       PARK2 MUTATED PARK2 WILD-TYPE
  CLUS_1             0              34
  CLUS_2             2              45
  CLUS_3             3              28
D53V6, multiclass
        clus
vv       PARK2 MUTATED PARK2 WILD-TYPE
  CLUS_1             2              29
  CLUS_2             2              25
  CLUS_3             1              32
  CLUS_4             0              21
D53V7, multiclass
        clus
vv       PARK2 MUTATED PARK2 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             0              62
  CLUS_3             5              48
  CLUS_4             3              25
D53V8, multiclass
        clus
vv       PARK2 MUTATED PARK2 WILD-TYPE
  CLUS_1             1              63
  CLUS_2             4              26
  CLUS_3             5              79
D53V9, multiclass
        clus
vv       PARK2 MUTATED PARK2 WILD-TYPE
  CLUS_1             5             100
  CLUS_2             1              26
  CLUS_3             1              29
D53V10, multiclass
        clus
vv       PARK2 MUTATED PARK2 WILD-TYPE
  CLUS_1             3              36
  CLUS_2             4              85
  CLUS_3             0              34

Clustering(54) Variable = HS6ST1 MUTATION ANALYSIS
D54V1, multiclass
        clus
vv       HS6ST1 MUTATED HS6ST1 WILD-TYPE
  CLUS_1              1               37
  CLUS_2              1               45
  CLUS_3              2               13
  CLUS_4              1               21
D54V2, multiclass
        clus
vv       HS6ST1 MUTATED HS6ST1 WILD-TYPE
  CLUS_1              1               10
  CLUS_2              1               49
  CLUS_3              3               57
D54V3, multiclass
        clus
vv       HS6ST1 MUTATED HS6ST1 WILD-TYPE
  CLUS_1              2               54
  CLUS_2              1               66
  CLUS_3              2               53
D54V4, multiclass
[1] "Remove cluster labels:" "HS6ST1 MUTATED"        
clus
  HS6ST1 MUTATED HS6ST1 WILD-TYPE 
               1               73 
      TCGA-18-3417       TCGA-18-4721       TCGA-18-5592       TCGA-18-5595 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4599       TCGA-22-4601       TCGA-22-4613 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-5471       TCGA-22-5472       TCGA-22-5473       TCGA-22-5474 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5482 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-33-4566       TCGA-33-4582       TCGA-33-4583       TCGA-33-4586 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-33-6737       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-5819 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-39-5016       TCGA-39-5019       TCGA-39-5021       TCGA-39-5022 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-39-5024       TCGA-39-5027       TCGA-39-5028       TCGA-39-5029 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-39-5031       TCGA-39-5035       TCGA-39-5036       TCGA-39-5037 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-39-5039       TCGA-43-5668       TCGA-43-6143       TCGA-43-6647 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-43-6770       TCGA-43-6771       TCGA-46-6025       TCGA-46-6026 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-56-5897       TCGA-56-5898       TCGA-56-6545       TCGA-56-6546 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-60-2709       TCGA-63-5128       TCGA-63-5131       TCGA-63-6202 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-70-6722       TCGA-70-6723       TCGA-85-6175       TCGA-85-6560 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-85-6561 
"HS6ST1 WILD-TYPE" 
D54V5, multiclass
[1] "Remove cluster labels:" "HS6ST1 MUTATED"        
clus
  HS6ST1 MUTATED HS6ST1 WILD-TYPE 
               2              110 
      TCGA-18-4721       TCGA-18-5592       TCGA-18-5595       TCGA-21-1070 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-21-1071       TCGA-21-1076       TCGA-21-1078       TCGA-21-1081 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-1011       TCGA-22-4591       TCGA-22-4607       TCGA-22-5471 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-5472       TCGA-22-5473       TCGA-22-5474       TCGA-22-5477 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-5478       TCGA-22-5480       TCGA-22-5482       TCGA-22-5485 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-5489       TCGA-22-5491       TCGA-22-5492       TCGA-33-4532 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4586 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-33-6737       TCGA-34-2596       TCGA-34-2608       TCGA-34-5231 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-34-5232       TCGA-34-5234       TCGA-34-5236       TCGA-34-5239 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-34-5241       TCGA-34-5927       TCGA-34-5928       TCGA-34-5929 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5031       TCGA-39-5035       TCGA-39-5037 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-43-2578       TCGA-43-5668       TCGA-43-6143       TCGA-43-6770 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-43-6771       TCGA-46-6025       TCGA-46-6026       TCGA-56-5897 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-56-5898       TCGA-56-6545       TCGA-56-6546       TCGA-60-2698 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-60-2708       TCGA-60-2709       TCGA-60-2710       TCGA-60-2711 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2713       TCGA-60-2719       TCGA-60-2720 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2724       TCGA-60-2725       TCGA-60-2726 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-63-5128       TCGA-63-5131       TCGA-63-6202       TCGA-66-2727 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2758       TCGA-66-2766       TCGA-66-2767       TCGA-66-2768 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2770       TCGA-66-2773       TCGA-66-2777       TCGA-66-2778 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2781       TCGA-66-2782       TCGA-66-2783       TCGA-66-2785 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2788       TCGA-66-2791       TCGA-66-2794       TCGA-66-2795 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2800       TCGA-70-6722       TCGA-70-6723       TCGA-85-6175 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-85-6560       TCGA-85-6561 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
D54V6, multiclass
[1] "Remove cluster labels:" "HS6ST1 MUTATED"        
clus
  HS6ST1 MUTATED HS6ST1 WILD-TYPE 
               2              110 
      TCGA-18-4721       TCGA-18-5592       TCGA-18-5595       TCGA-21-1070 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-21-1071       TCGA-21-1076       TCGA-21-1078       TCGA-21-1081 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-1011       TCGA-22-4591       TCGA-22-4607       TCGA-22-5471 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-5472       TCGA-22-5473       TCGA-22-5474       TCGA-22-5477 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-5478       TCGA-22-5480       TCGA-22-5482       TCGA-22-5485 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-5489       TCGA-22-5491       TCGA-22-5492       TCGA-33-4532 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4586 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-33-6737       TCGA-34-2596       TCGA-34-2608       TCGA-34-5231 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-34-5232       TCGA-34-5234       TCGA-34-5236       TCGA-34-5239 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-34-5241       TCGA-34-5927       TCGA-34-5928       TCGA-34-5929 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5031       TCGA-39-5035       TCGA-39-5037 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-43-2578       TCGA-43-5668       TCGA-43-6143       TCGA-43-6770 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-43-6771       TCGA-46-6025       TCGA-46-6026       TCGA-56-5897 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-56-5898       TCGA-56-6545       TCGA-56-6546       TCGA-60-2698 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-60-2708       TCGA-60-2709       TCGA-60-2710       TCGA-60-2711 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2713       TCGA-60-2719       TCGA-60-2720 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2724       TCGA-60-2725       TCGA-60-2726 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-63-5128       TCGA-63-5131       TCGA-63-6202       TCGA-66-2727 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2758       TCGA-66-2766       TCGA-66-2767       TCGA-66-2768 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2770       TCGA-66-2773       TCGA-66-2777       TCGA-66-2778 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2781       TCGA-66-2782       TCGA-66-2783       TCGA-66-2785 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2788       TCGA-66-2791       TCGA-66-2794       TCGA-66-2795 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2800       TCGA-70-6722       TCGA-70-6723       TCGA-85-6175 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-85-6560       TCGA-85-6561 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
D54V7, multiclass
        clus
vv       HS6ST1 MUTATED HS6ST1 WILD-TYPE
  CLUS_1              1               34
  CLUS_2              1               61
  CLUS_3              3               50
  CLUS_4              0               28
D54V8, multiclass
        clus
vv       HS6ST1 MUTATED HS6ST1 WILD-TYPE
  CLUS_1              1               63
  CLUS_2              3               27
  CLUS_3              1               83
D54V9, multiclass
        clus
vv       HS6ST1 MUTATED HS6ST1 WILD-TYPE
  CLUS_1              3              102
  CLUS_2              0               27
  CLUS_3              0               30
D54V10, multiclass
        clus
vv       HS6ST1 MUTATED HS6ST1 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              2               87
  CLUS_3              0               34

Clustering(55) Variable = RNF144A MUTATION ANALYSIS
D55V1, multiclass
        clus
vv       RNF144A MUTATED RNF144A WILD-TYPE
  CLUS_1               1                37
  CLUS_2               1                45
  CLUS_3               2                13
  CLUS_4               1                21
D55V2, multiclass
        clus
vv       RNF144A MUTATED RNF144A WILD-TYPE
  CLUS_1               1                10
  CLUS_2               1                49
  CLUS_3               3                57
D55V3, multiclass
        clus
vv       RNF144A MUTATED RNF144A WILD-TYPE
  CLUS_1               2                54
  CLUS_2               3                64
  CLUS_3               2                53
D55V4, multiclass
[1] "Remove cluster labels:" "RNF144A MUTATED"       
clus
  RNF144A MUTATED RNF144A WILD-TYPE 
                2                72 
       TCGA-18-3417        TCGA-18-4721        TCGA-18-5592        TCGA-18-5595 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-4593        TCGA-22-4599        TCGA-22-4601        TCGA-22-4613 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5480        TCGA-22-5482 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-33-6737        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-34-5239        TCGA-34-5240        TCGA-34-5241        TCGA-34-5927 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-34-5928        TCGA-34-5929        TCGA-37-5819        TCGA-39-5016 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-39-5021        TCGA-39-5022        TCGA-39-5024        TCGA-39-5027 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-39-5028        TCGA-39-5029        TCGA-39-5030        TCGA-39-5031 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-43-5668        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-43-6771        TCGA-46-6025        TCGA-46-6026        TCGA-56-5897 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-60-2709 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-63-5128        TCGA-63-5131        TCGA-63-6202        TCGA-70-6722 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-70-6723        TCGA-85-6175        TCGA-85-6560        TCGA-85-6561 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
D55V5, multiclass
        clus
vv       RNF144A MUTATED RNF144A WILD-TYPE
  CLUS_1               0                34
  CLUS_2               2                45
  CLUS_3               1                30
D55V6, multiclass
        clus
vv       RNF144A MUTATED RNF144A WILD-TYPE
  CLUS_1               0                31
  CLUS_2               1                26
  CLUS_3               2                31
  CLUS_4               0                21
D55V7, multiclass
        clus
vv       RNF144A MUTATED RNF144A WILD-TYPE
  CLUS_1               1                34
  CLUS_2               2                60
  CLUS_3               3                50
  CLUS_4               1                27
D55V8, multiclass
        clus
vv       RNF144A MUTATED RNF144A WILD-TYPE
  CLUS_1               1                63
  CLUS_2               1                29
  CLUS_3               5                79
D55V9, multiclass
        clus
vv       RNF144A MUTATED RNF144A WILD-TYPE
  CLUS_1               2               103
  CLUS_2               2                25
  CLUS_3               1                29
D55V10, multiclass
        clus
vv       RNF144A MUTATED RNF144A WILD-TYPE
  CLUS_1               3                36
  CLUS_2               2                87
  CLUS_3               0                34

Clustering(56) Variable = CALN1 MUTATION ANALYSIS
D56V1, multiclass
        clus
vv       CALN1 MUTATED CALN1 WILD-TYPE
  CLUS_1             3              35
  CLUS_2             2              44
  CLUS_3             0              15
  CLUS_4             1              21
D56V2, multiclass
        clus
vv       CALN1 MUTATED CALN1 WILD-TYPE
  CLUS_1             1              10
  CLUS_2             2              48
  CLUS_3             3              57
D56V3, multiclass
        clus
vv       CALN1 MUTATED CALN1 WILD-TYPE
  CLUS_1             2              54
  CLUS_2             4              63
  CLUS_3             3              52
D56V4, multiclass
        clus
vv       CALN1 MUTATED CALN1 WILD-TYPE
  CLUS_1             0              27
  CLUS_2             3              27
  CLUS_3             1              16
D56V5, multiclass
        clus
vv       CALN1 MUTATED CALN1 WILD-TYPE
  CLUS_1             4              30
  CLUS_2             3              44
  CLUS_3             1              30
D56V6, multiclass
        clus
vv       CALN1 MUTATED CALN1 WILD-TYPE
  CLUS_1             3              28
  CLUS_2             1              26
  CLUS_3             3              30
  CLUS_4             1              20
D56V7, multiclass
        clus
vv       CALN1 MUTATED CALN1 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             3              59
  CLUS_3             3              50
  CLUS_4             1              27
D56V8, multiclass
        clus
vv       CALN1 MUTATED CALN1 WILD-TYPE
  CLUS_1             3              61
  CLUS_2             2              28
  CLUS_3             4              80
D56V9, multiclass
        clus
vv       CALN1 MUTATED CALN1 WILD-TYPE
  CLUS_1             7              98
  CLUS_2             0              27
  CLUS_3             1              29
D56V10, multiclass
        clus
vv       CALN1 MUTATED CALN1 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             6              83
  CLUS_3             1              33

Clustering(57) Variable = ZNF80 MUTATION ANALYSIS
D57V1, multiclass
        clus
vv       ZNF80 MUTATED ZNF80 WILD-TYPE
  CLUS_1             3              35
  CLUS_2             3              43
  CLUS_3             1              14
  CLUS_4             0              22
D57V2, multiclass
        clus
vv       ZNF80 MUTATED ZNF80 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             3              47
  CLUS_3             4              56
D57V3, multiclass
        clus
vv       ZNF80 MUTATED ZNF80 WILD-TYPE
  CLUS_1             1              55
  CLUS_2             3              64
  CLUS_3             3              52
D57V4, multiclass
[1] "Remove cluster labels:" "ZNF80 MUTATED"         
clus
  ZNF80 MUTATED ZNF80 WILD-TYPE 
              1              73 
     TCGA-18-3417      TCGA-18-4721      TCGA-18-5592      TCGA-18-5595 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4599      TCGA-22-4601      TCGA-22-4613 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-5471      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-33-4566      TCGA-33-4582      TCGA-33-4583      TCGA-33-4586 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-33-6737      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-5819 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-39-5016      TCGA-39-5019      TCGA-39-5022      TCGA-39-5024 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-39-5027      TCGA-39-5028      TCGA-39-5029      TCGA-39-5030 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-39-5031      TCGA-39-5035      TCGA-39-5036      TCGA-39-5037 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-39-5039      TCGA-43-5668      TCGA-43-6143      TCGA-43-6647 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-43-6770      TCGA-43-6771      TCGA-46-6025      TCGA-46-6026 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-56-5897      TCGA-56-5898      TCGA-56-6545      TCGA-56-6546 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-60-2709      TCGA-63-5128      TCGA-63-5131      TCGA-63-6202 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723      TCGA-85-6175      TCGA-85-6560 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-85-6561 
"ZNF80 WILD-TYPE" 
D57V5, multiclass
        clus
vv       ZNF80 MUTATED ZNF80 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             3              44
  CLUS_3             0              31
D57V6, multiclass
        clus
vv       ZNF80 MUTATED ZNF80 WILD-TYPE
  CLUS_1             0              31
  CLUS_2             1              26
  CLUS_3             3              30
  CLUS_4             0              21
D57V7, multiclass
        clus
vv       ZNF80 MUTATED ZNF80 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             3              59
  CLUS_3             2              51
  CLUS_4             1              27
D57V8, multiclass
        clus
vv       ZNF80 MUTATED ZNF80 WILD-TYPE
  CLUS_1             3              61
  CLUS_2             1              29
  CLUS_3             3              81
D57V9, multiclass
        clus
vv       ZNF80 MUTATED ZNF80 WILD-TYPE
  CLUS_1             5             100
  CLUS_2             0              27
  CLUS_3             1              29
D57V10, multiclass
        clus
vv       ZNF80 MUTATED ZNF80 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             4              85
  CLUS_3             1              33

Clustering(58) Variable = CLVS2 MUTATION ANALYSIS
D58V1, multiclass
        clus
vv       CLVS2 MUTATED CLVS2 WILD-TYPE
  CLUS_1             2              36
  CLUS_2             3              43
  CLUS_3             2              13
  CLUS_4             0              22
D58V2, multiclass
        clus
vv       CLVS2 MUTATED CLVS2 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             3              47
  CLUS_3             4              56
D58V3, multiclass
        clus
vv       CLVS2 MUTATED CLVS2 WILD-TYPE
  CLUS_1             1              55
  CLUS_2             4              63
  CLUS_3             4              51
D58V4, multiclass
[1] "Remove cluster labels:" "CLVS2 MUTATED"         
clus
  CLVS2 MUTATED CLVS2 WILD-TYPE 
              2              72 
     TCGA-18-3417      TCGA-18-4721      TCGA-18-5592      TCGA-18-5595 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4599      TCGA-22-4601      TCGA-22-4613 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-5471      TCGA-22-5472      TCGA-22-5474      TCGA-22-5477 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-5478      TCGA-22-5480      TCGA-22-5482      TCGA-22-5485 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-33-4566 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-33-4582      TCGA-33-4583      TCGA-33-4586      TCGA-33-6737 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-34-5231      TCGA-34-5232      TCGA-34-5234      TCGA-34-5236 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-34-5239      TCGA-34-5240      TCGA-34-5241      TCGA-34-5927 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-34-5928      TCGA-37-5819      TCGA-39-5016      TCGA-39-5019 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-39-5021      TCGA-39-5022      TCGA-39-5024      TCGA-39-5027 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-39-5028      TCGA-39-5029      TCGA-39-5030      TCGA-39-5031 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-39-5035      TCGA-39-5036      TCGA-39-5037      TCGA-39-5039 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-43-5668      TCGA-43-6143      TCGA-43-6647      TCGA-43-6770 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-43-6771      TCGA-46-6025      TCGA-46-6026      TCGA-56-5897 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-56-5898      TCGA-56-6545      TCGA-56-6546      TCGA-60-2709 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-63-5128      TCGA-63-5131      TCGA-63-6202      TCGA-70-6722 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-70-6723      TCGA-85-6175      TCGA-85-6560      TCGA-85-6561 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
D58V5, multiclass
[1] "Remove cluster labels:" "CLVS2 MUTATED"         
clus
  CLVS2 MUTATED CLVS2 WILD-TYPE 
              2             110 
     TCGA-18-4721      TCGA-18-5592      TCGA-18-5595      TCGA-21-1070 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-21-1071      TCGA-21-1076      TCGA-21-1078      TCGA-21-1081 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-1011      TCGA-22-4591      TCGA-22-4607      TCGA-22-5471 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-5472      TCGA-22-5474      TCGA-22-5477      TCGA-22-5478 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-5480      TCGA-22-5482      TCGA-22-5485      TCGA-22-5489 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-5491      TCGA-22-5492      TCGA-33-4532      TCGA-33-4547 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-33-4566      TCGA-33-4582      TCGA-33-4586      TCGA-33-6737 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-34-2596      TCGA-34-2608      TCGA-34-5231      TCGA-34-5232 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-34-5234      TCGA-34-5236      TCGA-34-5239      TCGA-34-5241 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-37-3789      TCGA-37-4133 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-37-4135      TCGA-37-4141      TCGA-37-5819      TCGA-39-5016 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-39-5019      TCGA-39-5021      TCGA-39-5022      TCGA-39-5024 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-39-5027      TCGA-39-5028      TCGA-39-5029      TCGA-39-5030 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-39-5031      TCGA-39-5035      TCGA-39-5037      TCGA-43-2578 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-5668      TCGA-43-6143      TCGA-43-6770 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-43-6771      TCGA-46-6025      TCGA-46-6026      TCGA-56-5897 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-56-5898      TCGA-56-6545      TCGA-56-6546      TCGA-60-2698 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-60-2708      TCGA-60-2709      TCGA-60-2710      TCGA-60-2711 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2713      TCGA-60-2719      TCGA-60-2720 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2724      TCGA-60-2725      TCGA-60-2726 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-63-5128      TCGA-63-5131      TCGA-63-6202      TCGA-66-2727 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2758      TCGA-66-2766      TCGA-66-2767      TCGA-66-2768 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2770      TCGA-66-2773      TCGA-66-2777      TCGA-66-2778 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2781      TCGA-66-2782      TCGA-66-2783      TCGA-66-2785 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2788      TCGA-66-2791      TCGA-66-2794      TCGA-66-2795 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2800      TCGA-70-6722      TCGA-70-6723      TCGA-85-6175 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-85-6560      TCGA-85-6561 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
D58V6, multiclass
[1] "Remove cluster labels:" "CLVS2 MUTATED"         
clus
  CLVS2 MUTATED CLVS2 WILD-TYPE 
              2             110 
     TCGA-18-4721      TCGA-18-5592      TCGA-18-5595      TCGA-21-1070 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-21-1071      TCGA-21-1076      TCGA-21-1078      TCGA-21-1081 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-1011      TCGA-22-4591      TCGA-22-4607      TCGA-22-5471 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-5472      TCGA-22-5474      TCGA-22-5477      TCGA-22-5478 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-5480      TCGA-22-5482      TCGA-22-5485      TCGA-22-5489 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-5491      TCGA-22-5492      TCGA-33-4532      TCGA-33-4547 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-33-4566      TCGA-33-4582      TCGA-33-4586      TCGA-33-6737 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-34-2596      TCGA-34-2608      TCGA-34-5231      TCGA-34-5232 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-34-5234      TCGA-34-5236      TCGA-34-5239      TCGA-34-5241 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-37-3789      TCGA-37-4133 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-37-4135      TCGA-37-4141      TCGA-37-5819      TCGA-39-5016 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-39-5019      TCGA-39-5021      TCGA-39-5022      TCGA-39-5024 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-39-5027      TCGA-39-5028      TCGA-39-5029      TCGA-39-5030 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-39-5031      TCGA-39-5035      TCGA-39-5037      TCGA-43-2578 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-5668      TCGA-43-6143      TCGA-43-6770 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-43-6771      TCGA-46-6025      TCGA-46-6026      TCGA-56-5897 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-56-5898      TCGA-56-6545      TCGA-56-6546      TCGA-60-2698 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-60-2708      TCGA-60-2709      TCGA-60-2710      TCGA-60-2711 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2713      TCGA-60-2719      TCGA-60-2720 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2724      TCGA-60-2725      TCGA-60-2726 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-63-5128      TCGA-63-5131      TCGA-63-6202      TCGA-66-2727 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2758      TCGA-66-2766      TCGA-66-2767      TCGA-66-2768 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2770      TCGA-66-2773      TCGA-66-2777      TCGA-66-2778 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2781      TCGA-66-2782      TCGA-66-2783      TCGA-66-2785 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2788      TCGA-66-2791      TCGA-66-2794      TCGA-66-2795 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2800      TCGA-70-6722      TCGA-70-6723      TCGA-85-6175 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-85-6560      TCGA-85-6561 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
D58V7, multiclass
        clus
vv       CLVS2 MUTATED CLVS2 WILD-TYPE
  CLUS_1             0              35
  CLUS_2             4              58
  CLUS_3             3              50
  CLUS_4             2              26
D58V8, multiclass
        clus
vv       CLVS2 MUTATED CLVS2 WILD-TYPE
  CLUS_1             4              60
  CLUS_2             2              28
  CLUS_3             3              81
D58V9, multiclass
        clus
vv       CLVS2 MUTATED CLVS2 WILD-TYPE
  CLUS_1             4             101
  CLUS_2             1              26
  CLUS_3             3              27
D58V10, multiclass
        clus
vv       CLVS2 MUTATED CLVS2 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             4              85
  CLUS_3             3              31

Clustering(59) Variable = OR5M9 MUTATION ANALYSIS
D59V1, multiclass
        clus
vv       OR5M9 MUTATED OR5M9 WILD-TYPE
  CLUS_1             2              36
  CLUS_2             1              45
  CLUS_3             0              15
  CLUS_4             2              20
D59V2, multiclass
        clus
vv       OR5M9 MUTATED OR5M9 WILD-TYPE
  CLUS_1             1              10
  CLUS_2             1              49
  CLUS_3             3              57
D59V3, multiclass
        clus
vv       OR5M9 MUTATED OR5M9 WILD-TYPE
  CLUS_1             1              55
  CLUS_2             5              62
  CLUS_3             2              53
D59V4, multiclass
        clus
vv       OR5M9 MUTATED OR5M9 WILD-TYPE
  CLUS_1             1              26
  CLUS_2             3              27
  CLUS_3             1              16
D59V5, multiclass
        clus
vv       OR5M9 MUTATED OR5M9 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             1              46
  CLUS_3             1              30
D59V6, multiclass
        clus
vv       OR5M9 MUTATED OR5M9 WILD-TYPE
  CLUS_1             1              30
  CLUS_2             1              26
  CLUS_3             1              32
  CLUS_4             0              21
D59V7, multiclass
        clus
vv       OR5M9 MUTATED OR5M9 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             2              60
  CLUS_3             4              49
  CLUS_4             1              27
D59V8, multiclass
        clus
vv       OR5M9 MUTATED OR5M9 WILD-TYPE
  CLUS_1             2              62
  CLUS_2             1              29
  CLUS_3             5              79
D59V9, multiclass
        clus
vv       OR5M9 MUTATED OR5M9 WILD-TYPE
  CLUS_1             5             100
  CLUS_2             2              25
  CLUS_3             1              29
D59V10, multiclass
        clus
vv       OR5M9 MUTATED OR5M9 WILD-TYPE
  CLUS_1             3              36
  CLUS_2             4              85
  CLUS_3             1              33

Clustering(60) Variable = SLC17A8 MUTATION ANALYSIS
D60V1, multiclass
        clus
vv       SLC17A8 MUTATED SLC17A8 WILD-TYPE
  CLUS_1               1                37
  CLUS_2               3                43
  CLUS_3               1                14
  CLUS_4               3                19
D60V2, multiclass
        clus
vv       SLC17A8 MUTATED SLC17A8 WILD-TYPE
  CLUS_1               1                10
  CLUS_2               3                47
  CLUS_3               4                56
D60V3, multiclass
        clus
vv       SLC17A8 MUTATED SLC17A8 WILD-TYPE
  CLUS_1               1                55
  CLUS_2               6                61
  CLUS_3               6                49
D60V4, multiclass
        clus
vv       SLC17A8 MUTATED SLC17A8 WILD-TYPE
  CLUS_1               0                27
  CLUS_2               3                27
  CLUS_3               3                14
D60V5, multiclass
        clus
vv       SLC17A8 MUTATED SLC17A8 WILD-TYPE
  CLUS_1               3                31
  CLUS_2               2                45
  CLUS_3               2                29
D60V6, multiclass
        clus
vv       SLC17A8 MUTATED SLC17A8 WILD-TYPE
  CLUS_1               2                29
  CLUS_2               2                25
  CLUS_3               2                31
  CLUS_4               1                20
D60V7, multiclass
        clus
vv       SLC17A8 MUTATED SLC17A8 WILD-TYPE
  CLUS_1               2                33
  CLUS_2               5                57
  CLUS_3               6                47
  CLUS_4               0                28
D60V8, multiclass
        clus
vv       SLC17A8 MUTATED SLC17A8 WILD-TYPE
  CLUS_1               5                59
  CLUS_2               3                27
  CLUS_3               5                79
D60V9, multiclass
        clus
vv       SLC17A8 MUTATED SLC17A8 WILD-TYPE
  CLUS_1               5               100
  CLUS_2               3                24
  CLUS_3               3                27
D60V10, multiclass
        clus
vv       SLC17A8 MUTATED SLC17A8 WILD-TYPE
  CLUS_1               4                35
  CLUS_2               4                85
  CLUS_3               3                31

Clustering(61) Variable = TECRL MUTATION ANALYSIS
D61V1, multiclass
        clus
vv       TECRL MUTATED TECRL WILD-TYPE
  CLUS_1             1              37
  CLUS_2             1              45
  CLUS_3             0              15
  CLUS_4             2              20
D61V2, multiclass
        clus
vv       TECRL MUTATED TECRL WILD-TYPE
  CLUS_1             2               9
  CLUS_2             1              49
  CLUS_3             1              59
D61V3, multiclass
        clus
vv       TECRL MUTATED TECRL WILD-TYPE
  CLUS_1             3              53
  CLUS_2             3              64
  CLUS_3             3              52
D61V4, multiclass
        clus
vv       TECRL MUTATED TECRL WILD-TYPE
  CLUS_1             3              24
  CLUS_2             2              28
  CLUS_3             1              16
D61V5, multiclass
        clus
vv       TECRL MUTATED TECRL WILD-TYPE
  CLUS_1             3              31
  CLUS_2             2              45
  CLUS_3             1              30
D61V6, multiclass
        clus
vv       TECRL MUTATED TECRL WILD-TYPE
  CLUS_1             3              28
  CLUS_2             1              26
  CLUS_3             1              32
  CLUS_4             1              20
D61V7, multiclass
        clus
vv       TECRL MUTATED TECRL WILD-TYPE
  CLUS_1             2              33
  CLUS_2             2              60
  CLUS_3             3              50
  CLUS_4             2              26
D61V8, multiclass
        clus
vv       TECRL MUTATED TECRL WILD-TYPE
  CLUS_1             2              62
  CLUS_2             3              27
  CLUS_3             4              80
D61V9, multiclass
        clus
vv       TECRL MUTATED TECRL WILD-TYPE
  CLUS_1             3             102
  CLUS_2             3              24
  CLUS_3             1              29
D61V10, multiclass
        clus
vv       TECRL MUTATED TECRL WILD-TYPE
  CLUS_1             2              37
  CLUS_2             4              85
  CLUS_3             1              33

Clustering(62) Variable = OR4D5 MUTATION ANALYSIS
D62V1, multiclass
        clus
vv       OR4D5 MUTATED OR4D5 WILD-TYPE
  CLUS_1             1              37
  CLUS_2             4              42
  CLUS_3             1              14
  CLUS_4             2              20
D62V2, multiclass
        clus
vv       OR4D5 MUTATED OR4D5 WILD-TYPE
  CLUS_1             1              10
  CLUS_2             4              46
  CLUS_3             3              57
D62V3, multiclass
        clus
vv       OR4D5 MUTATED OR4D5 WILD-TYPE
  CLUS_1             0              56
  CLUS_2             6              61
  CLUS_3             3              52
D62V4, multiclass
        clus
vv       OR4D5 MUTATED OR4D5 WILD-TYPE
  CLUS_1             0              27
  CLUS_2             3              27
  CLUS_3             1              16
D62V5, multiclass
        clus
vv       OR4D5 MUTATED OR4D5 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             2              45
  CLUS_3             2              29
D62V6, multiclass
        clus
vv       OR4D5 MUTATED OR4D5 WILD-TYPE
  CLUS_1             1              30
  CLUS_2             1              26
  CLUS_3             2              31
  CLUS_4             1              20
D62V7, multiclass
        clus
vv       OR4D5 MUTATED OR4D5 WILD-TYPE
  CLUS_1             0              35
  CLUS_2             5              57
  CLUS_3             4              49
  CLUS_4             0              28
D62V8, multiclass
        clus
vv       OR4D5 MUTATED OR4D5 WILD-TYPE
  CLUS_1             5              59
  CLUS_2             2              28
  CLUS_3             2              82
D62V9, multiclass
        clus
vv       OR4D5 MUTATED OR4D5 WILD-TYPE
  CLUS_1             6              99
  CLUS_2             0              27
  CLUS_3             1              29
D62V10, multiclass
        clus
vv       OR4D5 MUTATED OR4D5 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             4              85
  CLUS_3             1              33

Clustering(63) Variable = POTEG MUTATION ANALYSIS
D63V1, multiclass
        clus
vv       POTEG MUTATED POTEG WILD-TYPE
  CLUS_1             1              37
  CLUS_2             2              44
  CLUS_3             0              15
  CLUS_4             3              19
D63V2, multiclass
        clus
vv       POTEG MUTATED POTEG WILD-TYPE
  CLUS_1             2               9
  CLUS_2             2              48
  CLUS_3             2              58
D63V3, multiclass
        clus
vv       POTEG MUTATED POTEG WILD-TYPE
  CLUS_1             3              53
  CLUS_2             3              64
  CLUS_3             4              51
D63V4, multiclass
        clus
vv       POTEG MUTATED POTEG WILD-TYPE
  CLUS_1             1              26
  CLUS_2             2              28
  CLUS_3             2              15
D63V5, multiclass
        clus
vv       POTEG MUTATED POTEG WILD-TYPE
  CLUS_1             1              33
  CLUS_2             5              42
  CLUS_3             1              30
D63V6, multiclass
        clus
vv       POTEG MUTATED POTEG WILD-TYPE
  CLUS_1             2              29
  CLUS_2             0              27
  CLUS_3             4              29
  CLUS_4             1              20
D63V7, multiclass
        clus
vv       POTEG MUTATED POTEG WILD-TYPE
  CLUS_1             2              33
  CLUS_2             3              59
  CLUS_3             5              48
  CLUS_4             0              28
D63V8, multiclass
        clus
vv       POTEG MUTATED POTEG WILD-TYPE
  CLUS_1             2              62
  CLUS_2             2              28
  CLUS_3             6              78
D63V9, multiclass
        clus
vv       POTEG MUTATED POTEG WILD-TYPE
  CLUS_1             5             100
  CLUS_2             1              26
  CLUS_3             0              30
D63V10, multiclass
        clus
vv       POTEG MUTATED POTEG WILD-TYPE
  CLUS_1             1              38
  CLUS_2             5              84
  CLUS_3             0              34

Clustering(64) Variable = TEX13A MUTATION ANALYSIS
D64V1, multiclass
        clus
vv       TEX13A MUTATED TEX13A WILD-TYPE
  CLUS_1              1               37
  CLUS_2              3               43
  CLUS_3              2               13
  CLUS_4              1               21
D64V2, multiclass
        clus
vv       TEX13A MUTATED TEX13A WILD-TYPE
  CLUS_1              0               11
  CLUS_2              3               47
  CLUS_3              4               56
D64V3, multiclass
        clus
vv       TEX13A MUTATED TEX13A WILD-TYPE
  CLUS_1              2               54
  CLUS_2              5               62
  CLUS_3              1               54
D64V4, multiclass
[1] "Remove cluster labels:" "TEX13A MUTATED"        
clus
  TEX13A MUTATED TEX13A WILD-TYPE 
               2               72 
      TCGA-18-3417       TCGA-18-4721       TCGA-18-5592       TCGA-18-5595 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4599       TCGA-22-4601       TCGA-22-5471 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-5472       TCGA-22-5473       TCGA-22-5474       TCGA-22-5477 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-5478       TCGA-22-5480       TCGA-22-5482       TCGA-22-5485 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-5489       TCGA-22-5491       TCGA-22-5492       TCGA-33-4566 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-33-4582       TCGA-33-4583       TCGA-33-4586       TCGA-33-6737 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-34-5231       TCGA-34-5232       TCGA-34-5234       TCGA-34-5236 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-34-5239       TCGA-34-5240       TCGA-34-5241       TCGA-34-5927 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-34-5928       TCGA-34-5929       TCGA-37-5819       TCGA-39-5016 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-39-5019       TCGA-39-5021       TCGA-39-5022       TCGA-39-5024 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-39-5027       TCGA-39-5028       TCGA-39-5029       TCGA-39-5030 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-39-5031       TCGA-39-5035       TCGA-39-5036       TCGA-39-5037 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-39-5039       TCGA-43-5668       TCGA-43-6143       TCGA-43-6647 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-43-6771       TCGA-46-6025       TCGA-46-6026       TCGA-56-5897 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-56-5898       TCGA-56-6545       TCGA-56-6546       TCGA-60-2709 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-63-5128       TCGA-63-5131       TCGA-63-6202       TCGA-70-6722 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-70-6723       TCGA-85-6175       TCGA-85-6560       TCGA-85-6561 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
D64V5, multiclass
        clus
vv       TEX13A MUTATED TEX13A WILD-TYPE
  CLUS_1              2               32
  CLUS_2              3               44
  CLUS_3              1               30
D64V6, multiclass
        clus
vv       TEX13A MUTATED TEX13A WILD-TYPE
  CLUS_1              1               30
  CLUS_2              2               25
  CLUS_3              3               30
  CLUS_4              0               21
D64V7, multiclass
        clus
vv       TEX13A MUTATED TEX13A WILD-TYPE
  CLUS_1              2               33
  CLUS_2              5               57
  CLUS_3              1               52
  CLUS_4              0               28
D64V8, multiclass
        clus
vv       TEX13A MUTATED TEX13A WILD-TYPE
  CLUS_1              6               58
  CLUS_2              0               30
  CLUS_3              2               82
D64V9, multiclass
        clus
vv       TEX13A MUTATED TEX13A WILD-TYPE
  CLUS_1              4              101
  CLUS_2              0               27
  CLUS_3              2               28
D64V10, multiclass
        clus
vv       TEX13A MUTATED TEX13A WILD-TYPE
  CLUS_1              2               37
  CLUS_2              1               88
  CLUS_3              3               31

Clustering(65) Variable = HIST2H2BE MUTATION ANALYSIS
D65V1, multiclass
[1] "Remove cluster labels:" "HIST2H2BE MUTATED"     
clus
  HIST2H2BE MUTATED HIST2H2BE WILD-TYPE 
                  2                 119 
         TCGA-18-3406          TCGA-18-3407          TCGA-18-3408 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-18-3409          TCGA-18-3410          TCGA-18-3411 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-18-3412          TCGA-18-3415          TCGA-18-3416 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-18-3417          TCGA-18-3419          TCGA-18-3421 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-18-4083          TCGA-18-4086          TCGA-21-1070 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-21-1071          TCGA-21-1076          TCGA-21-1077 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-21-1078          TCGA-21-1081          TCGA-22-0944 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-1002          TCGA-22-1011          TCGA-22-1012 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-1016          TCGA-22-4591          TCGA-22-4595 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-4599          TCGA-22-4601          TCGA-22-4604 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-4607          TCGA-22-4613          TCGA-33-4532 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-33-4533          TCGA-33-4538          TCGA-33-4547 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-33-4566          TCGA-33-4582          TCGA-34-2596 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-2600          TCGA-34-2608          TCGA-34-5240 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-5241          TCGA-37-3783          TCGA-37-3789 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-37-4133          TCGA-37-4135          TCGA-37-4141 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5016          TCGA-39-5021          TCGA-39-5029 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5030          TCGA-39-5035          TCGA-39-5036 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5037          TCGA-43-2578          TCGA-43-3394 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-43-3920          TCGA-46-3765          TCGA-46-3766 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-46-3767          TCGA-46-3768          TCGA-46-3769 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-51-4079          TCGA-51-4080          TCGA-51-4081 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-56-1622          TCGA-60-2698          TCGA-60-2707 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2708          TCGA-60-2710          TCGA-60-2711 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2712          TCGA-60-2713          TCGA-60-2715 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2719          TCGA-60-2720          TCGA-60-2721 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2722          TCGA-60-2724          TCGA-60-2725 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2726          TCGA-63-5128          TCGA-63-5131 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2727          TCGA-66-2734          TCGA-66-2742 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2744          TCGA-66-2754          TCGA-66-2755 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2756          TCGA-66-2757          TCGA-66-2758 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2759          TCGA-66-2763          TCGA-66-2765 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2766          TCGA-66-2767          TCGA-66-2768 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2770          TCGA-66-2771          TCGA-66-2773 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2777          TCGA-66-2778          TCGA-66-2780 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2781          TCGA-66-2782          TCGA-66-2783 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2785          TCGA-66-2786          TCGA-66-2787 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2788          TCGA-66-2789          TCGA-66-2791 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2792          TCGA-66-2793          TCGA-66-2794 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2795          TCGA-66-2800 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
D65V2, multiclass
[1] "Remove cluster labels:" "HIST2H2BE MUTATED"     
clus
  HIST2H2BE MUTATED HIST2H2BE WILD-TYPE 
                  2                 119 
         TCGA-18-3406          TCGA-18-3407          TCGA-18-3408 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-18-3409          TCGA-18-3410          TCGA-18-3411 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-18-3412          TCGA-18-3415          TCGA-18-3416 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-18-3417          TCGA-18-3419          TCGA-18-3421 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-18-4083          TCGA-18-4086          TCGA-21-1070 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-21-1071          TCGA-21-1076          TCGA-21-1077 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-21-1078          TCGA-21-1081          TCGA-22-0944 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-1002          TCGA-22-1011          TCGA-22-1012 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-1016          TCGA-22-4591          TCGA-22-4595 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-4599          TCGA-22-4601          TCGA-22-4604 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-4607          TCGA-22-4613          TCGA-33-4532 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-33-4533          TCGA-33-4538          TCGA-33-4547 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-33-4566          TCGA-33-4582          TCGA-34-2596 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-2600          TCGA-34-2608          TCGA-34-5240 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-5241          TCGA-37-3783          TCGA-37-3789 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-37-4133          TCGA-37-4135          TCGA-37-4141 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5016          TCGA-39-5021          TCGA-39-5029 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5030          TCGA-39-5035          TCGA-39-5036 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5037          TCGA-43-2578          TCGA-43-3394 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-43-3920          TCGA-46-3765          TCGA-46-3766 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-46-3767          TCGA-46-3768          TCGA-46-3769 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-51-4079          TCGA-51-4080          TCGA-51-4081 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-56-1622          TCGA-60-2698          TCGA-60-2707 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2708          TCGA-60-2710          TCGA-60-2711 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2712          TCGA-60-2713          TCGA-60-2715 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2719          TCGA-60-2720          TCGA-60-2721 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2722          TCGA-60-2724          TCGA-60-2725 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2726          TCGA-63-5128          TCGA-63-5131 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2727          TCGA-66-2734          TCGA-66-2742 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2744          TCGA-66-2754          TCGA-66-2755 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2756          TCGA-66-2757          TCGA-66-2758 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2759          TCGA-66-2763          TCGA-66-2765 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2766          TCGA-66-2767          TCGA-66-2768 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2770          TCGA-66-2771          TCGA-66-2773 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2777          TCGA-66-2778          TCGA-66-2780 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2781          TCGA-66-2782          TCGA-66-2783 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2785          TCGA-66-2786          TCGA-66-2787 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2788          TCGA-66-2789          TCGA-66-2791 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2792          TCGA-66-2793          TCGA-66-2794 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2795          TCGA-66-2800 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
D65V3, multiclass
        clus
vv       HIST2H2BE MUTATED HIST2H2BE WILD-TYPE
  CLUS_1                 0                  56
  CLUS_2                 1                  66
  CLUS_3                 2                  53
D65V4, multiclass
[1] "Remove cluster labels:" "HIST2H2BE MUTATED"     
clus
  HIST2H2BE MUTATED HIST2H2BE WILD-TYPE 
                  1                  73 
         TCGA-18-3417          TCGA-18-4721          TCGA-18-5592 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-18-5595          TCGA-21-5782          TCGA-21-5784 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-21-5786          TCGA-21-5787          TCGA-22-4593 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-4599          TCGA-22-4601          TCGA-22-4613 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5471          TCGA-22-5472          TCGA-22-5473 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5474          TCGA-22-5478          TCGA-22-5480 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5482          TCGA-22-5485          TCGA-22-5489 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5491          TCGA-22-5492          TCGA-33-4566 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-33-4582          TCGA-33-4583          TCGA-33-4586 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-33-6737          TCGA-34-5231          TCGA-34-5232 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-5234          TCGA-34-5236          TCGA-34-5239 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-5240          TCGA-34-5241          TCGA-34-5927 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-5928          TCGA-34-5929          TCGA-37-5819 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5016          TCGA-39-5019          TCGA-39-5021 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5022          TCGA-39-5024          TCGA-39-5027 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5028          TCGA-39-5029          TCGA-39-5030 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5031          TCGA-39-5035          TCGA-39-5036 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5037          TCGA-39-5039          TCGA-43-5668 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-43-6143          TCGA-43-6647          TCGA-43-6770 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-43-6771          TCGA-46-6025          TCGA-46-6026 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-56-5897          TCGA-56-5898          TCGA-56-6545 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-56-6546          TCGA-60-2709          TCGA-63-5128 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-63-5131          TCGA-63-6202          TCGA-70-6722 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-70-6723          TCGA-85-6175          TCGA-85-6560 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-85-6561 
"HIST2H2BE WILD-TYPE" 
D65V5, multiclass
[1] "Remove cluster labels:" "HIST2H2BE MUTATED"     
clus
  HIST2H2BE MUTATED HIST2H2BE WILD-TYPE 
                  1                 111 
         TCGA-18-4721          TCGA-18-5592          TCGA-18-5595 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-21-1070          TCGA-21-1071          TCGA-21-1076 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-21-1078          TCGA-21-1081          TCGA-21-5782 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-21-5784          TCGA-21-5786          TCGA-21-5787 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-1011          TCGA-22-4591          TCGA-22-4607 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5471          TCGA-22-5472          TCGA-22-5473 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5474          TCGA-22-5478          TCGA-22-5480 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5482          TCGA-22-5485          TCGA-22-5489 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5491          TCGA-22-5492          TCGA-33-4532 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-33-4547          TCGA-33-4566          TCGA-33-4582 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-33-4586          TCGA-33-6737          TCGA-34-2596 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-2608          TCGA-34-5231          TCGA-34-5232 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-5234          TCGA-34-5236          TCGA-34-5239 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-5241          TCGA-34-5927          TCGA-34-5928 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-5929          TCGA-37-3789          TCGA-37-4133 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-37-4135          TCGA-37-4141          TCGA-37-5819 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5016          TCGA-39-5019          TCGA-39-5021 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5022          TCGA-39-5024          TCGA-39-5027 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5028          TCGA-39-5029          TCGA-39-5030 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5031          TCGA-39-5035          TCGA-39-5037 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-43-2578          TCGA-43-3394          TCGA-43-5668 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-43-6143          TCGA-43-6770          TCGA-43-6771 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-46-6025          TCGA-46-6026          TCGA-56-5897 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-56-5898          TCGA-56-6545          TCGA-56-6546 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2698          TCGA-60-2708          TCGA-60-2709 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2710          TCGA-60-2711          TCGA-60-2712 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2713          TCGA-60-2719          TCGA-60-2720 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2721          TCGA-60-2724          TCGA-60-2725 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2726          TCGA-63-5128          TCGA-63-5131 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-63-6202          TCGA-66-2727          TCGA-66-2758 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2766          TCGA-66-2767          TCGA-66-2768 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2770          TCGA-66-2773          TCGA-66-2777 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2778          TCGA-66-2781          TCGA-66-2782 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2783          TCGA-66-2785          TCGA-66-2788 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2791          TCGA-66-2794          TCGA-66-2795 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2800          TCGA-70-6722          TCGA-70-6723 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-85-6175          TCGA-85-6560          TCGA-85-6561 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
D65V6, multiclass
[1] "Remove cluster labels:" "HIST2H2BE MUTATED"     
clus
  HIST2H2BE MUTATED HIST2H2BE WILD-TYPE 
                  1                 111 
         TCGA-18-4721          TCGA-18-5592          TCGA-18-5595 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-21-1070          TCGA-21-1071          TCGA-21-1076 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-21-1078          TCGA-21-1081          TCGA-21-5782 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-21-5784          TCGA-21-5786          TCGA-21-5787 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-1011          TCGA-22-4591          TCGA-22-4607 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5471          TCGA-22-5472          TCGA-22-5473 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5474          TCGA-22-5478          TCGA-22-5480 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5482          TCGA-22-5485          TCGA-22-5489 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5491          TCGA-22-5492          TCGA-33-4532 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-33-4547          TCGA-33-4566          TCGA-33-4582 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-33-4586          TCGA-33-6737          TCGA-34-2596 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-2608          TCGA-34-5231          TCGA-34-5232 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-5234          TCGA-34-5236          TCGA-34-5239 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-5241          TCGA-34-5927          TCGA-34-5928 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-5929          TCGA-37-3789          TCGA-37-4133 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-37-4135          TCGA-37-4141          TCGA-37-5819 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5016          TCGA-39-5019          TCGA-39-5021 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5022          TCGA-39-5024          TCGA-39-5027 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5028          TCGA-39-5029          TCGA-39-5030 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5031          TCGA-39-5035          TCGA-39-5037 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-43-2578          TCGA-43-3394          TCGA-43-5668 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-43-6143          TCGA-43-6770          TCGA-43-6771 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-46-6025          TCGA-46-6026          TCGA-56-5897 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-56-5898          TCGA-56-6545          TCGA-56-6546 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2698          TCGA-60-2708          TCGA-60-2709 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2710          TCGA-60-2711          TCGA-60-2712 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2713          TCGA-60-2719          TCGA-60-2720 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2721          TCGA-60-2724          TCGA-60-2725 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2726          TCGA-63-5128          TCGA-63-5131 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-63-6202          TCGA-66-2727          TCGA-66-2758 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2766          TCGA-66-2767          TCGA-66-2768 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2770          TCGA-66-2773          TCGA-66-2777 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2778          TCGA-66-2781          TCGA-66-2782 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2783          TCGA-66-2785          TCGA-66-2788 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2791          TCGA-66-2794          TCGA-66-2795 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2800          TCGA-70-6722          TCGA-70-6723 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-85-6175          TCGA-85-6560          TCGA-85-6561 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
D65V7, multiclass
        clus
vv       HIST2H2BE MUTATED HIST2H2BE WILD-TYPE
  CLUS_1                 0                  35
  CLUS_2                 2                  60
  CLUS_3                 1                  52
  CLUS_4                 0                  28
D65V8, multiclass
        clus
vv       HIST2H2BE MUTATED HIST2H2BE WILD-TYPE
  CLUS_1                 2                  62
  CLUS_2                 0                  30
  CLUS_3                 1                  83
D65V9, multiclass
        clus
vv       HIST2H2BE MUTATED HIST2H2BE WILD-TYPE
  CLUS_1                 2                 103
  CLUS_2                 0                  27
  CLUS_3                 1                  29
D65V10, multiclass
        clus
vv       HIST2H2BE MUTATED HIST2H2BE WILD-TYPE
  CLUS_1                 0                  39
  CLUS_2                 1                  88
  CLUS_3                 2                  32

Clustering(66) Variable = KCNJ3 MUTATION ANALYSIS
D66V1, multiclass
        clus
vv       KCNJ3 MUTATED KCNJ3 WILD-TYPE
  CLUS_1             3              35
  CLUS_2             4              42
  CLUS_3             1              14
  CLUS_4             2              20
D66V2, multiclass
        clus
vv       KCNJ3 MUTATED KCNJ3 WILD-TYPE
  CLUS_1             3               8
  CLUS_2             5              45
  CLUS_3             2              58
D66V3, multiclass
        clus
vv       KCNJ3 MUTATED KCNJ3 WILD-TYPE
  CLUS_1             3              53
  CLUS_2             3              64
  CLUS_3             5              50
D66V4, multiclass
        clus
vv       KCNJ3 MUTATED KCNJ3 WILD-TYPE
  CLUS_1             2              25
  CLUS_2             1              29
  CLUS_3             0              17
D66V5, multiclass
        clus
vv       KCNJ3 MUTATED KCNJ3 WILD-TYPE
  CLUS_1             4              30
  CLUS_2             1              46
  CLUS_3             1              30
D66V6, multiclass
        clus
vv       KCNJ3 MUTATED KCNJ3 WILD-TYPE
  CLUS_1             3              28
  CLUS_2             2              25
  CLUS_3             1              32
  CLUS_4             0              21
D66V7, multiclass
        clus
vv       KCNJ3 MUTATED KCNJ3 WILD-TYPE
  CLUS_1             4              31
  CLUS_2             4              58
  CLUS_3             1              52
  CLUS_4             2              26
D66V8, multiclass
        clus
vv       KCNJ3 MUTATED KCNJ3 WILD-TYPE
  CLUS_1             5              59
  CLUS_2             1              29
  CLUS_3             5              79
D66V9, multiclass
        clus
vv       KCNJ3 MUTATED KCNJ3 WILD-TYPE
  CLUS_1             8              97
  CLUS_2             0              27
  CLUS_3             2              28
D66V10, multiclass
        clus
vv       KCNJ3 MUTATED KCNJ3 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             6              83
  CLUS_3             2              32

Clustering(67) Variable = NUCB2 MUTATION ANALYSIS
D67V1, multiclass
        clus
vv       NUCB2 MUTATED NUCB2 WILD-TYPE
  CLUS_1             0              38
  CLUS_2             3              43
  CLUS_3             1              14
  CLUS_4             0              22
D67V2, multiclass
        clus
vv       NUCB2 MUTATED NUCB2 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             3              47
  CLUS_3             1              59
D67V3, multiclass
        clus
vv       NUCB2 MUTATED NUCB2 WILD-TYPE
  CLUS_1             3              53
  CLUS_2             3              64
  CLUS_3             0              55
D67V4, multiclass
        clus
vv       NUCB2 MUTATED NUCB2 WILD-TYPE
  CLUS_1             1              26
  CLUS_2             2              28
  CLUS_3             0              17
D67V5, multiclass
        clus
vv       NUCB2 MUTATED NUCB2 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             2              45
  CLUS_3             0              31
D67V6, multiclass
        clus
vv       NUCB2 MUTATED NUCB2 WILD-TYPE
  CLUS_1             0              31
  CLUS_2             1              26
  CLUS_3             2              31
  CLUS_4             0              21
D67V7, multiclass
        clus
vv       NUCB2 MUTATED NUCB2 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             3              59
  CLUS_3             1              52
  CLUS_4             0              28
D67V8, multiclass
        clus
vv       NUCB2 MUTATED NUCB2 WILD-TYPE
  CLUS_1             5              59
  CLUS_2             0              30
  CLUS_3             1              83
D67V9, multiclass
        clus
vv       NUCB2 MUTATED NUCB2 WILD-TYPE
  CLUS_1             2             103
  CLUS_2             2              25
  CLUS_3             1              29
D67V10, multiclass
        clus
vv       NUCB2 MUTATED NUCB2 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             3              86
  CLUS_3             1              33

Clustering(68) Variable = TRHDE MUTATION ANALYSIS
D68V1, multiclass
        clus
vv       TRHDE MUTATED TRHDE WILD-TYPE
  CLUS_1             4              34
  CLUS_2             2              44
  CLUS_3             2              13
  CLUS_4             3              19
D68V2, multiclass
        clus
vv       TRHDE MUTATED TRHDE WILD-TYPE
  CLUS_1             2               9
  CLUS_2             2              48
  CLUS_3             7              53
D68V3, multiclass
        clus
vv       TRHDE MUTATED TRHDE WILD-TYPE
  CLUS_1             3              53
  CLUS_2             7              60
  CLUS_3             4              51
D68V4, multiclass
        clus
vv       TRHDE MUTATED TRHDE WILD-TYPE
  CLUS_1             1              26
  CLUS_2             3              27
  CLUS_3             0              17
D68V5, multiclass
        clus
vv       TRHDE MUTATED TRHDE WILD-TYPE
  CLUS_1             4              30
  CLUS_2             3              44
  CLUS_3             0              31
D68V6, multiclass
        clus
vv       TRHDE MUTATED TRHDE WILD-TYPE
  CLUS_1             1              30
  CLUS_2             3              24
  CLUS_3             2              31
  CLUS_4             1              20
D68V7, multiclass
        clus
vv       TRHDE MUTATED TRHDE WILD-TYPE
  CLUS_1             4              31
  CLUS_2             4              58
  CLUS_3             5              48
  CLUS_4             1              27
D68V8, multiclass
        clus
vv       TRHDE MUTATED TRHDE WILD-TYPE
  CLUS_1             5              59
  CLUS_2             4              26
  CLUS_3             5              79
D68V9, multiclass
        clus
vv       TRHDE MUTATED TRHDE WILD-TYPE
  CLUS_1            10              95
  CLUS_2             1              26
  CLUS_3             2              28
D68V10, multiclass
        clus
vv       TRHDE MUTATED TRHDE WILD-TYPE
  CLUS_1             0              39
  CLUS_2            10              79
  CLUS_3             3              31

Clustering(69) Variable = OR14A16 MUTATION ANALYSIS
D69V1, multiclass
        clus
vv       OR14A16 MUTATED OR14A16 WILD-TYPE
  CLUS_1               2                36
  CLUS_2               2                44
  CLUS_3               1                14
  CLUS_4               2                20
D69V2, multiclass
        clus
vv       OR14A16 MUTATED OR14A16 WILD-TYPE
  CLUS_1               2                 9
  CLUS_2               2                48
  CLUS_3               3                57
D69V3, multiclass
        clus
vv       OR14A16 MUTATED OR14A16 WILD-TYPE
  CLUS_1               4                52
  CLUS_2               2                65
  CLUS_3               4                51
D69V4, multiclass
        clus
vv       OR14A16 MUTATED OR14A16 WILD-TYPE
  CLUS_1               2                25
  CLUS_2               2                28
  CLUS_3               0                17
D69V5, multiclass
        clus
vv       OR14A16 MUTATED OR14A16 WILD-TYPE
  CLUS_1               1                33
  CLUS_2               3                44
  CLUS_3               1                30
D69V6, multiclass
        clus
vv       OR14A16 MUTATED OR14A16 WILD-TYPE
  CLUS_1               1                30
  CLUS_2               0                27
  CLUS_3               2                31
  CLUS_4               2                19
D69V7, multiclass
        clus
vv       OR14A16 MUTATED OR14A16 WILD-TYPE
  CLUS_1               0                35
  CLUS_2               4                58
  CLUS_3               4                49
  CLUS_4               2                26
D69V8, multiclass
        clus
vv       OR14A16 MUTATED OR14A16 WILD-TYPE
  CLUS_1               4                60
  CLUS_2               3                27
  CLUS_3               3                81
D69V9, multiclass
        clus
vv       OR14A16 MUTATED OR14A16 WILD-TYPE
  CLUS_1               5               100
  CLUS_2               3                24
  CLUS_3               1                29
D69V10, multiclass
        clus
vv       OR14A16 MUTATED OR14A16 WILD-TYPE
  CLUS_1               2                37
  CLUS_2               6                83
  CLUS_3               1                33

Clustering(70) Variable = OR6K3 MUTATION ANALYSIS
D70V1, multiclass
        clus
vv       OR6K3 MUTATED OR6K3 WILD-TYPE
  CLUS_1             1              37
  CLUS_2             3              43
  CLUS_3             1              14
  CLUS_4             2              20
D70V2, multiclass
        clus
vv       OR6K3 MUTATED OR6K3 WILD-TYPE
  CLUS_1             2               9
  CLUS_2             4              46
  CLUS_3             1              59
D70V3, multiclass
        clus
vv       OR6K3 MUTATED OR6K3 WILD-TYPE
  CLUS_1             1              55
  CLUS_2             5              62
  CLUS_3             2              53
D70V4, multiclass
[1] "Remove cluster labels:" "OR6K3 MUTATED"         
clus
  OR6K3 MUTATED OR6K3 WILD-TYPE 
              2              72 
     TCGA-18-3417      TCGA-18-4721      TCGA-18-5592      TCGA-18-5595 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4599      TCGA-22-4601      TCGA-22-4613 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-5471      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-33-4566      TCGA-33-4582      TCGA-33-4586      TCGA-33-6737 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-34-5231      TCGA-34-5232      TCGA-34-5234      TCGA-34-5236 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-34-5239      TCGA-34-5241      TCGA-34-5927      TCGA-34-5928 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-34-5929      TCGA-37-5819      TCGA-39-5016      TCGA-39-5019 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-39-5021      TCGA-39-5022      TCGA-39-5024      TCGA-39-5027 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-39-5028      TCGA-39-5029      TCGA-39-5030      TCGA-39-5031 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-39-5035      TCGA-39-5036      TCGA-39-5037      TCGA-39-5039 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-43-5668      TCGA-43-6143      TCGA-43-6647      TCGA-43-6770 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-43-6771      TCGA-46-6025      TCGA-46-6026      TCGA-56-5897 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-56-5898      TCGA-56-6545      TCGA-56-6546      TCGA-60-2709 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-63-5128      TCGA-63-5131      TCGA-63-6202      TCGA-70-6722 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-70-6723      TCGA-85-6175      TCGA-85-6560      TCGA-85-6561 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
D70V5, multiclass
        clus
vv       OR6K3 MUTATED OR6K3 WILD-TYPE
  CLUS_1             2              32
  CLUS_2             1              46
  CLUS_3             0              31
D70V6, multiclass
        clus
vv       OR6K3 MUTATED OR6K3 WILD-TYPE
  CLUS_1             1              30
  CLUS_2             1              26
  CLUS_3             1              32
  CLUS_4             0              21
D70V7, multiclass
        clus
vv       OR6K3 MUTATED OR6K3 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             4              58
  CLUS_3             2              51
  CLUS_4             0              28
D70V8, multiclass
        clus
vv       OR6K3 MUTATED OR6K3 WILD-TYPE
  CLUS_1             5              59
  CLUS_2             1              29
  CLUS_3             2              82
D70V9, multiclass
        clus
vv       OR6K3 MUTATED OR6K3 WILD-TYPE
  CLUS_1             4             101
  CLUS_2             0              27
  CLUS_3             1              29
D70V10, multiclass
        clus
vv       OR6K3 MUTATED OR6K3 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             3              86
  CLUS_3             2              32

Clustering(71) Variable = SLC6A5 MUTATION ANALYSIS
D71V1, multiclass
        clus
vv       SLC6A5 MUTATED SLC6A5 WILD-TYPE
  CLUS_1              1               37
  CLUS_2              2               44
  CLUS_3              0               15
  CLUS_4              0               22
D71V2, multiclass
        clus
vv       SLC6A5 MUTATED SLC6A5 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              2               48
  CLUS_3              1               59
D71V3, multiclass
        clus
vv       SLC6A5 MUTATED SLC6A5 WILD-TYPE
  CLUS_1              3               53
  CLUS_2              3               64
  CLUS_3              0               55
D71V4, multiclass
        clus
vv       SLC6A5 MUTATED SLC6A5 WILD-TYPE
  CLUS_1              1               26
  CLUS_2              2               28
  CLUS_3              1               16
D71V5, multiclass
        clus
vv       SLC6A5 MUTATED SLC6A5 WILD-TYPE
  CLUS_1              0               34
  CLUS_2              2               45
  CLUS_3              1               30
D71V6, multiclass
        clus
vv       SLC6A5 MUTATED SLC6A5 WILD-TYPE
  CLUS_1              0               31
  CLUS_2              1               26
  CLUS_3              0               33
  CLUS_4              2               19
D71V7, multiclass
        clus
vv       SLC6A5 MUTATED SLC6A5 WILD-TYPE
  CLUS_1              1               34
  CLUS_2              3               59
  CLUS_3              1               52
  CLUS_4              1               27
D71V8, multiclass
        clus
vv       SLC6A5 MUTATED SLC6A5 WILD-TYPE
  CLUS_1              3               61
  CLUS_2              0               30
  CLUS_3              3               81
D71V9, multiclass
        clus
vv       SLC6A5 MUTATED SLC6A5 WILD-TYPE
  CLUS_1              4              101
  CLUS_2              0               27
  CLUS_3              2               28
D71V10, multiclass
        clus
vv       SLC6A5 MUTATED SLC6A5 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              4               85
  CLUS_3              1               33

Clustering(72) Variable = OR2AK2 MUTATION ANALYSIS
D72V1, multiclass
        clus
vv       OR2AK2 MUTATED OR2AK2 WILD-TYPE
  CLUS_1              1               37
  CLUS_2              1               45
  CLUS_3              0               15
  CLUS_4              2               20
D72V2, multiclass
        clus
vv       OR2AK2 MUTATED OR2AK2 WILD-TYPE
  CLUS_1              2                9
  CLUS_2              1               49
  CLUS_3              1               59
D72V3, multiclass
        clus
vv       OR2AK2 MUTATED OR2AK2 WILD-TYPE
  CLUS_1              2               54
  CLUS_2              1               66
  CLUS_3              5               50
D72V4, multiclass
        clus
vv       OR2AK2 MUTATED OR2AK2 WILD-TYPE
  CLUS_1              3               24
  CLUS_2              1               29
  CLUS_3              1               16
D72V5, multiclass
        clus
vv       OR2AK2 MUTATED OR2AK2 WILD-TYPE
  CLUS_1              2               32
  CLUS_2              3               44
  CLUS_3              1               30
D72V6, multiclass
        clus
vv       OR2AK2 MUTATED OR2AK2 WILD-TYPE
  CLUS_1              2               29
  CLUS_2              0               27
  CLUS_3              3               30
  CLUS_4              1               20
D72V7, multiclass
        clus
vv       OR2AK2 MUTATED OR2AK2 WILD-TYPE
  CLUS_1              0               35
  CLUS_2              2               60
  CLUS_3              5               48
  CLUS_4              1               27
D72V8, multiclass
        clus
vv       OR2AK2 MUTATED OR2AK2 WILD-TYPE
  CLUS_1              2               62
  CLUS_2              2               28
  CLUS_3              4               80
D72V9, multiclass
        clus
vv       OR2AK2 MUTATED OR2AK2 WILD-TYPE
  CLUS_1              6               99
  CLUS_2              2               25
  CLUS_3              0               30
D72V10, multiclass
        clus
vv       OR2AK2 MUTATED OR2AK2 WILD-TYPE
  CLUS_1              2               37
  CLUS_2              5               84
  CLUS_3              1               33

Clustering(73) Variable = FAM5B MUTATION ANALYSIS
D73V1, multiclass
        clus
vv       FAM5B MUTATED FAM5B WILD-TYPE
  CLUS_1             3              35
  CLUS_2             3              43
  CLUS_3             1              14
  CLUS_4             1              21
D73V2, multiclass
        clus
vv       FAM5B MUTATED FAM5B WILD-TYPE
  CLUS_1             1              10
  CLUS_2             3              47
  CLUS_3             4              56
D73V3, multiclass
        clus
vv       FAM5B MUTATED FAM5B WILD-TYPE
  CLUS_1             6              50
  CLUS_2             4              63
  CLUS_3             4              51
D73V4, multiclass
        clus
vv       FAM5B MUTATED FAM5B WILD-TYPE
  CLUS_1             5              22
  CLUS_2             2              28
  CLUS_3             1              16
D73V5, multiclass
        clus
vv       FAM5B MUTATED FAM5B WILD-TYPE
  CLUS_1             3              31
  CLUS_2             6              41
  CLUS_3             2              29
D73V6, multiclass
        clus
vv       FAM5B MUTATED FAM5B WILD-TYPE
  CLUS_1             2              29
  CLUS_2             3              24
  CLUS_3             5              28
  CLUS_4             1              20
D73V7, multiclass
        clus
vv       FAM5B MUTATED FAM5B WILD-TYPE
  CLUS_1             0              35
  CLUS_2             5              57
  CLUS_3             7              46
  CLUS_4             2              26
D73V8, multiclass
        clus
vv       FAM5B MUTATED FAM5B WILD-TYPE
  CLUS_1             4              60
  CLUS_2             3              27
  CLUS_3             7              77
D73V9, multiclass
        clus
vv       FAM5B MUTATED FAM5B WILD-TYPE
  CLUS_1             8              97
  CLUS_2             2              25
  CLUS_3             3              27
D73V10, multiclass
        clus
vv       FAM5B MUTATED FAM5B WILD-TYPE
  CLUS_1             2              37
  CLUS_2             7              82
  CLUS_3             4              30

Clustering(74) Variable = OR10A4 MUTATION ANALYSIS
D74V1, multiclass
        clus
vv       OR10A4 MUTATED OR10A4 WILD-TYPE
  CLUS_1              2               36
  CLUS_2              2               44
  CLUS_3              0               15
  CLUS_4              2               20
D74V2, multiclass
        clus
vv       OR10A4 MUTATED OR10A4 WILD-TYPE
  CLUS_1              1               10
  CLUS_2              2               48
  CLUS_3              3               57
D74V3, multiclass
        clus
vv       OR10A4 MUTATED OR10A4 WILD-TYPE
  CLUS_1              1               55
  CLUS_2              3               64
  CLUS_3              4               51
D74V4, multiclass
        clus
vv       OR10A4 MUTATED OR10A4 WILD-TYPE
  CLUS_1              2               25
  CLUS_2              2               28
  CLUS_3              0               17
D74V5, multiclass
        clus
vv       OR10A4 MUTATED OR10A4 WILD-TYPE
  CLUS_1              2               32
  CLUS_2              1               46
  CLUS_3              1               30
D74V6, multiclass
        clus
vv       OR10A4 MUTATED OR10A4 WILD-TYPE
  CLUS_1              2               29
  CLUS_2              2               25
  CLUS_3              0               33
  CLUS_4              0               21
D74V7, multiclass
        clus
vv       OR10A4 MUTATED OR10A4 WILD-TYPE
  CLUS_1              0               35
  CLUS_2              3               59
  CLUS_3              2               51
  CLUS_4              3               25
D74V8, multiclass
        clus
vv       OR10A4 MUTATED OR10A4 WILD-TYPE
  CLUS_1              3               61
  CLUS_2              1               29
  CLUS_3              4               80
D74V9, multiclass
        clus
vv       OR10A4 MUTATED OR10A4 WILD-TYPE
  CLUS_1              8               97
  CLUS_2              0               27
  CLUS_3              0               30
D74V10, multiclass
        clus
vv       OR10A4 MUTATED OR10A4 WILD-TYPE
  CLUS_1              2               37
  CLUS_2              5               84
  CLUS_3              1               33

Clustering(75) Variable = OR8H1 MUTATION ANALYSIS
D75V1, multiclass
        clus
vv       OR8H1 MUTATED OR8H1 WILD-TYPE
  CLUS_1             2              36
  CLUS_2             1              45
  CLUS_3             1              14
  CLUS_4             2              20
D75V2, multiclass
        clus
vv       OR8H1 MUTATED OR8H1 WILD-TYPE
  CLUS_1             3               8
  CLUS_2             1              49
  CLUS_3             2              58
D75V3, multiclass
        clus
vv       OR8H1 MUTATED OR8H1 WILD-TYPE
  CLUS_1             1              55
  CLUS_2             4              63
  CLUS_3             3              52
D75V4, multiclass
        clus
vv       OR8H1 MUTATED OR8H1 WILD-TYPE
  CLUS_1             1              26
  CLUS_2             2              28
  CLUS_3             0              17
D75V5, multiclass
        clus
vv       OR8H1 MUTATED OR8H1 WILD-TYPE
  CLUS_1             4              30
  CLUS_2             2              45
  CLUS_3             1              30
D75V6, multiclass
        clus
vv       OR8H1 MUTATED OR8H1 WILD-TYPE
  CLUS_1             2              29
  CLUS_2             3              24
  CLUS_3             2              31
  CLUS_4             0              21
D75V7, multiclass
        clus
vv       OR8H1 MUTATED OR8H1 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             2              60
  CLUS_3             2              51
  CLUS_4             2              26
D75V8, multiclass
        clus
vv       OR8H1 MUTATED OR8H1 WILD-TYPE
  CLUS_1             3              61
  CLUS_2             1              29
  CLUS_3             4              80
D75V9, multiclass
        clus
vv       OR8H1 MUTATED OR8H1 WILD-TYPE
  CLUS_1             6              99
  CLUS_2             0              27
  CLUS_3             0              30
D75V10, multiclass
        clus
vv       OR8H1 MUTATED OR8H1 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             3              86
  CLUS_3             2              32

Clustering(76) Variable = PYHIN1 MUTATION ANALYSIS
D76V1, multiclass
        clus
vv       PYHIN1 MUTATED PYHIN1 WILD-TYPE
  CLUS_1              2               36
  CLUS_2              3               43
  CLUS_3              2               13
  CLUS_4              1               21
D76V2, multiclass
        clus
vv       PYHIN1 MUTATED PYHIN1 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              4               46
  CLUS_3              4               56
D76V3, multiclass
        clus
vv       PYHIN1 MUTATED PYHIN1 WILD-TYPE
  CLUS_1              4               52
  CLUS_2              3               64
  CLUS_3              4               51
D76V4, multiclass
        clus
vv       PYHIN1 MUTATED PYHIN1 WILD-TYPE
  CLUS_1              3               24
  CLUS_2              2               28
  CLUS_3              0               17
D76V5, multiclass
        clus
vv       PYHIN1 MUTATED PYHIN1 WILD-TYPE
  CLUS_1              1               33
  CLUS_2              5               42
  CLUS_3              2               29
D76V6, multiclass
        clus
vv       PYHIN1 MUTATED PYHIN1 WILD-TYPE
  CLUS_1              2               29
  CLUS_2              1               26
  CLUS_3              4               29
  CLUS_4              1               20
D76V7, multiclass
        clus
vv       PYHIN1 MUTATED PYHIN1 WILD-TYPE
  CLUS_1              2               33
  CLUS_2              4               58
  CLUS_3              3               50
  CLUS_4              2               26
D76V8, multiclass
        clus
vv       PYHIN1 MUTATED PYHIN1 WILD-TYPE
  CLUS_1              4               60
  CLUS_2              2               28
  CLUS_3              5               79
D76V9, multiclass
        clus
vv       PYHIN1 MUTATED PYHIN1 WILD-TYPE
  CLUS_1              5              100
  CLUS_2              1               26
  CLUS_3              1               29
D76V10, multiclass
        clus
vv       PYHIN1 MUTATED PYHIN1 WILD-TYPE
  CLUS_1              3               36
  CLUS_2              3               86
  CLUS_3              1               33

Clustering(77) Variable = CNTNAP4 MUTATION ANALYSIS
D77V1, multiclass
        clus
vv       CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  CLUS_1               3                35
  CLUS_2               3                43
  CLUS_3               2                13
  CLUS_4               1                21
D77V2, multiclass
        clus
vv       CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  CLUS_1               0                11
  CLUS_2               5                45
  CLUS_3               4                56
D77V3, multiclass
        clus
vv       CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  CLUS_1               2                54
  CLUS_2               8                59
  CLUS_3               6                49
D77V4, multiclass
        clus
vv       CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  CLUS_1               3                24
  CLUS_2               3                27
  CLUS_3               2                15
D77V5, multiclass
        clus
vv       CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  CLUS_1               3                31
  CLUS_2               6                41
  CLUS_3               0                31
D77V6, multiclass
        clus
vv       CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  CLUS_1               2                29
  CLUS_2               1                26
  CLUS_3               5                28
  CLUS_4               1                20
D77V7, multiclass
        clus
vv       CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  CLUS_1               3                32
  CLUS_2               6                56
  CLUS_3               4                49
  CLUS_4               3                25
D77V8, multiclass
        clus
vv       CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  CLUS_1               7                57
  CLUS_2               2                28
  CLUS_3               7                77
D77V9, multiclass
        clus
vv       CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  CLUS_1               9                96
  CLUS_2               6                21
  CLUS_3               0                30
D77V10, multiclass
        clus
vv       CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  CLUS_1               6                33
  CLUS_2               8                81
  CLUS_3               1                33

Clustering(78) Variable = HRAS MUTATION ANALYSIS
D78V1, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            2             36
  CLUS_2            2             44
  CLUS_3            0             15
  CLUS_4            0             22
D78V2, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            0             11
  CLUS_2            2             48
  CLUS_3            2             58
D78V3, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            0             56
  CLUS_2            4             63
  CLUS_3            1             54
D78V4, multiclass
[1] "Remove cluster labels:" "HRAS MUTATED"          
clus
  HRAS MUTATED HRAS WILD-TYPE 
             2             72 
    TCGA-18-3417     TCGA-18-4721     TCGA-18-5592     TCGA-18-5595 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5787     TCGA-22-4593 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4613     TCGA-22-5471 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-5472     TCGA-22-5473     TCGA-22-5474     TCGA-22-5477 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-5478     TCGA-22-5480     TCGA-22-5482     TCGA-22-5485 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-5489     TCGA-22-5491     TCGA-22-5492     TCGA-33-4566 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-33-4582     TCGA-33-4583     TCGA-33-4586     TCGA-33-6737 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-34-5231     TCGA-34-5232     TCGA-34-5234     TCGA-34-5236 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-34-5239     TCGA-34-5241     TCGA-34-5927     TCGA-34-5928 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-34-5929     TCGA-37-5819     TCGA-39-5016     TCGA-39-5019 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-39-5021     TCGA-39-5022     TCGA-39-5024     TCGA-39-5027 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-39-5028     TCGA-39-5029     TCGA-39-5030     TCGA-39-5031 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-39-5035     TCGA-39-5036     TCGA-39-5037     TCGA-39-5039 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-43-5668     TCGA-43-6143     TCGA-43-6647     TCGA-43-6770 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-43-6771     TCGA-46-6025     TCGA-46-6026     TCGA-56-5897 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-56-5898     TCGA-56-6545     TCGA-56-6546     TCGA-60-2709 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-63-5128     TCGA-63-5131     TCGA-63-6202     TCGA-70-6722 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-70-6723     TCGA-85-6175     TCGA-85-6560     TCGA-85-6561 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
D78V5, multiclass
[1] "Remove cluster labels:" "HRAS MUTATED"          
clus
  HRAS MUTATED HRAS WILD-TYPE 
             2            110 
    TCGA-18-4721     TCGA-18-5592     TCGA-18-5595     TCGA-21-1070 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-21-1071     TCGA-21-1076     TCGA-21-1078     TCGA-21-1081 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5787     TCGA-22-1011 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-4591     TCGA-22-4607     TCGA-22-5471     TCGA-22-5472 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-5473     TCGA-22-5474     TCGA-22-5477     TCGA-22-5478 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-5480     TCGA-22-5482     TCGA-22-5485     TCGA-22-5489 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-5491     TCGA-22-5492     TCGA-33-4532     TCGA-33-4547 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-33-4566     TCGA-33-4582     TCGA-33-4586     TCGA-33-6737 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-34-2596     TCGA-34-2608     TCGA-34-5231     TCGA-34-5232 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-34-5234     TCGA-34-5236     TCGA-34-5239     TCGA-34-5241 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3789 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-37-4133     TCGA-37-4135     TCGA-37-4141     TCGA-37-5819 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-39-5016     TCGA-39-5019     TCGA-39-5021     TCGA-39-5022 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-39-5024     TCGA-39-5027     TCGA-39-5028     TCGA-39-5029 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-39-5030     TCGA-39-5031     TCGA-39-5035     TCGA-39-5037 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-43-2578     TCGA-43-3394     TCGA-43-5668     TCGA-43-6143 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-43-6770     TCGA-43-6771     TCGA-46-6025     TCGA-46-6026 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-56-5897     TCGA-56-5898     TCGA-56-6545     TCGA-56-6546 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-60-2698     TCGA-60-2708     TCGA-60-2709     TCGA-60-2710 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-60-2711     TCGA-60-2712     TCGA-60-2713     TCGA-60-2719 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-60-2720     TCGA-60-2721     TCGA-60-2724     TCGA-60-2725 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-60-2726     TCGA-63-5128     TCGA-63-5131     TCGA-63-6202 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2727     TCGA-66-2766     TCGA-66-2767     TCGA-66-2768 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2770     TCGA-66-2773     TCGA-66-2777     TCGA-66-2778 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2781     TCGA-66-2782     TCGA-66-2783     TCGA-66-2785 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2788     TCGA-66-2791     TCGA-66-2794     TCGA-66-2795 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2800     TCGA-70-6722     TCGA-70-6723     TCGA-85-6175 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-85-6560     TCGA-85-6561 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" 
D78V6, multiclass
[1] "Remove cluster labels:" "HRAS MUTATED"          
clus
  HRAS MUTATED HRAS WILD-TYPE 
             2            110 
    TCGA-18-4721     TCGA-18-5592     TCGA-18-5595     TCGA-21-1070 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-21-1071     TCGA-21-1076     TCGA-21-1078     TCGA-21-1081 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5787     TCGA-22-1011 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-4591     TCGA-22-4607     TCGA-22-5471     TCGA-22-5472 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-5473     TCGA-22-5474     TCGA-22-5477     TCGA-22-5478 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-5480     TCGA-22-5482     TCGA-22-5485     TCGA-22-5489 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-5491     TCGA-22-5492     TCGA-33-4532     TCGA-33-4547 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-33-4566     TCGA-33-4582     TCGA-33-4586     TCGA-33-6737 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-34-2596     TCGA-34-2608     TCGA-34-5231     TCGA-34-5232 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-34-5234     TCGA-34-5236     TCGA-34-5239     TCGA-34-5241 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3789 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-37-4133     TCGA-37-4135     TCGA-37-4141     TCGA-37-5819 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-39-5016     TCGA-39-5019     TCGA-39-5021     TCGA-39-5022 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-39-5024     TCGA-39-5027     TCGA-39-5028     TCGA-39-5029 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-39-5030     TCGA-39-5031     TCGA-39-5035     TCGA-39-5037 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-43-2578     TCGA-43-3394     TCGA-43-5668     TCGA-43-6143 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-43-6770     TCGA-43-6771     TCGA-46-6025     TCGA-46-6026 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-56-5897     TCGA-56-5898     TCGA-56-6545     TCGA-56-6546 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-60-2698     TCGA-60-2708     TCGA-60-2709     TCGA-60-2710 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-60-2711     TCGA-60-2712     TCGA-60-2713     TCGA-60-2719 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-60-2720     TCGA-60-2721     TCGA-60-2724     TCGA-60-2725 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-60-2726     TCGA-63-5128     TCGA-63-5131     TCGA-63-6202 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2727     TCGA-66-2766     TCGA-66-2767     TCGA-66-2768 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2770     TCGA-66-2773     TCGA-66-2777     TCGA-66-2778 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2781     TCGA-66-2782     TCGA-66-2783     TCGA-66-2785 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2788     TCGA-66-2791     TCGA-66-2794     TCGA-66-2795 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2800     TCGA-70-6722     TCGA-70-6723     TCGA-85-6175 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-85-6560     TCGA-85-6561 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" 
D78V7, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            0             35
  CLUS_2            2             60
  CLUS_3            3             50
  CLUS_4            0             28
D78V8, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            2             62
  CLUS_2            0             30
  CLUS_3            3             81
D78V9, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            2            103
  CLUS_2            0             27
  CLUS_3            3             27
D78V10, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            1             38
  CLUS_2            2             87
  CLUS_3            2             32

Clustering(79) Variable = PRIM2 MUTATION ANALYSIS
D79V1, multiclass
        clus
vv       PRIM2 MUTATED PRIM2 WILD-TYPE
  CLUS_1             1              37
  CLUS_2             3              43
  CLUS_3             2              13
  CLUS_4             1              21
D79V2, multiclass
        clus
vv       PRIM2 MUTATED PRIM2 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             4              46
  CLUS_3             3              57
D79V3, multiclass
        clus
vv       PRIM2 MUTATED PRIM2 WILD-TYPE
  CLUS_1             5              51
  CLUS_2             2              65
  CLUS_3             6              49
D79V4, multiclass
        clus
vv       PRIM2 MUTATED PRIM2 WILD-TYPE
  CLUS_1             3              24
  CLUS_2             1              29
  CLUS_3             2              15
D79V5, multiclass
        clus
vv       PRIM2 MUTATED PRIM2 WILD-TYPE
  CLUS_1             5              29
  CLUS_2             2              45
  CLUS_3             2              29
D79V6, multiclass
        clus
vv       PRIM2 MUTATED PRIM2 WILD-TYPE
  CLUS_1             5              26
  CLUS_2             1              26
  CLUS_3             1              32
  CLUS_4             2              19
D79V7, multiclass
        clus
vv       PRIM2 MUTATED PRIM2 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             6              56
  CLUS_3             5              48
  CLUS_4             1              27
D79V8, multiclass
        clus
vv       PRIM2 MUTATED PRIM2 WILD-TYPE
  CLUS_1             6              58
  CLUS_2             5              25
  CLUS_3             2              82
D79V9, multiclass
        clus
vv       PRIM2 MUTATED PRIM2 WILD-TYPE
  CLUS_1             6              99
  CLUS_2             3              24
  CLUS_3             2              28
D79V10, multiclass
        clus
vv       PRIM2 MUTATED PRIM2 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             5              84
  CLUS_3             5              29

Clustering(80) Variable = SPOPL MUTATION ANALYSIS
D80V1, multiclass
        clus
vv       SPOPL MUTATED SPOPL WILD-TYPE
  CLUS_1             2              36
  CLUS_2             1              45
  CLUS_3             1              14
  CLUS_4             1              21
D80V2, multiclass
        clus
vv       SPOPL MUTATED SPOPL WILD-TYPE
  CLUS_1             1              10
  CLUS_2             1              49
  CLUS_3             3              57
D80V3, multiclass
        clus
vv       SPOPL MUTATED SPOPL WILD-TYPE
  CLUS_1             0              56
  CLUS_2             2              65
  CLUS_3             4              51
D80V4, multiclass
[1] "Remove cluster labels:" "SPOPL MUTATED"         
clus
  SPOPL MUTATED SPOPL WILD-TYPE 
              1              73 
     TCGA-18-3417      TCGA-18-4721      TCGA-18-5592      TCGA-18-5595 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4599      TCGA-22-4601      TCGA-22-4613 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-5471      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-33-4566      TCGA-33-4582      TCGA-33-4583      TCGA-33-4586 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-33-6737      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-39-5016 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-39-5019      TCGA-39-5021      TCGA-39-5022      TCGA-39-5024 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-39-5027      TCGA-39-5028      TCGA-39-5029      TCGA-39-5030 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-39-5031      TCGA-39-5035      TCGA-39-5036      TCGA-39-5037 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-39-5039      TCGA-43-5668      TCGA-43-6143      TCGA-43-6647 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-43-6770      TCGA-43-6771      TCGA-46-6025      TCGA-46-6026 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-56-5897      TCGA-56-5898      TCGA-56-6545      TCGA-56-6546 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-60-2709      TCGA-63-5128      TCGA-63-5131      TCGA-63-6202 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723      TCGA-85-6175      TCGA-85-6560 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-85-6561 
"SPOPL WILD-TYPE" 
D80V5, multiclass
        clus
vv       SPOPL MUTATED SPOPL WILD-TYPE
  CLUS_1             3              31
  CLUS_2             1              46
  CLUS_3             0              31
D80V6, multiclass
        clus
vv       SPOPL MUTATED SPOPL WILD-TYPE
  CLUS_1             2              29
  CLUS_2             1              26
  CLUS_3             1              32
  CLUS_4             0              21
D80V7, multiclass
        clus
vv       SPOPL MUTATED SPOPL WILD-TYPE
  CLUS_1             1              34
  CLUS_2             1              61
  CLUS_3             4              49
  CLUS_4             0              28
D80V8, multiclass
        clus
vv       SPOPL MUTATED SPOPL WILD-TYPE
  CLUS_1             1              63
  CLUS_2             2              28
  CLUS_3             3              81
D80V9, multiclass
        clus
vv       SPOPL MUTATED SPOPL WILD-TYPE
  CLUS_1             6              99
  CLUS_2             0              27
  CLUS_3             0              30
D80V10, multiclass
        clus
vv       SPOPL MUTATED SPOPL WILD-TYPE
  CLUS_1             2              37
  CLUS_2             4              85
  CLUS_3             0              34

Clustering(81) Variable = GPC5 MUTATION ANALYSIS
D81V1, multiclass
        clus
vv       GPC5 MUTATED GPC5 WILD-TYPE
  CLUS_1            3             35
  CLUS_2            3             43
  CLUS_3            3             12
  CLUS_4            1             21
D81V2, multiclass
        clus
vv       GPC5 MUTATED GPC5 WILD-TYPE
  CLUS_1            0             11
  CLUS_2            4             46
  CLUS_3            6             54
D81V3, multiclass
        clus
vv       GPC5 MUTATED GPC5 WILD-TYPE
  CLUS_1            3             53
  CLUS_2            6             61
  CLUS_3            2             53
D81V4, multiclass
[1] "Remove cluster labels:" "GPC5 MUTATED"          
clus
  GPC5 MUTATED GPC5 WILD-TYPE 
             2             72 
    TCGA-18-3417     TCGA-18-4721     TCGA-18-5592     TCGA-18-5595 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-4593     TCGA-22-4599     TCGA-22-4601     TCGA-22-4613 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-5471     TCGA-22-5472     TCGA-22-5473     TCGA-22-5474 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-5477     TCGA-22-5478     TCGA-22-5480     TCGA-22-5482 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-5485     TCGA-22-5489     TCGA-22-5491     TCGA-22-5492 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-33-4566     TCGA-33-4582     TCGA-33-4586     TCGA-33-6737 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-34-5231     TCGA-34-5232     TCGA-34-5234     TCGA-34-5236 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-34-5239     TCGA-34-5240     TCGA-34-5241     TCGA-34-5927 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-34-5928     TCGA-34-5929     TCGA-37-5819     TCGA-39-5019 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-39-5021     TCGA-39-5022     TCGA-39-5024     TCGA-39-5027 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-39-5028     TCGA-39-5029     TCGA-39-5030     TCGA-39-5031 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-39-5035     TCGA-39-5036     TCGA-39-5037     TCGA-39-5039 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-43-5668     TCGA-43-6143     TCGA-43-6647     TCGA-43-6770 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-43-6771     TCGA-46-6025     TCGA-46-6026     TCGA-56-5897 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-56-5898     TCGA-56-6545     TCGA-56-6546     TCGA-60-2709 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-63-5128     TCGA-63-5131     TCGA-63-6202     TCGA-70-6722 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-70-6723     TCGA-85-6175     TCGA-85-6560     TCGA-85-6561 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
D81V5, multiclass
        clus
vv       GPC5 MUTATED GPC5 WILD-TYPE
  CLUS_1            3             31
  CLUS_2            1             46
  CLUS_3            1             30
D81V6, multiclass
        clus
vv       GPC5 MUTATED GPC5 WILD-TYPE
  CLUS_1            2             29
  CLUS_2            2             25
  CLUS_3            1             32
  CLUS_4            0             21
D81V7, multiclass
        clus
vv       GPC5 MUTATED GPC5 WILD-TYPE
  CLUS_1            1             34
  CLUS_2            5             57
  CLUS_3            3             50
  CLUS_4            2             26
D81V8, multiclass
        clus
vv       GPC5 MUTATED GPC5 WILD-TYPE
  CLUS_1            5             59
  CLUS_2            2             28
  CLUS_3            4             80
D81V9, multiclass
        clus
vv       GPC5 MUTATED GPC5 WILD-TYPE
  CLUS_1            7             98
  CLUS_2            0             27
  CLUS_3            1             29
D81V10, multiclass
        clus
vv       GPC5 MUTATED GPC5 WILD-TYPE
  CLUS_1            2             37
  CLUS_2            4             85
  CLUS_3            2             32

Clustering(82) Variable = HLA-A MUTATION ANALYSIS
D82V1, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             1              37
  CLUS_2             0              46
  CLUS_3             2              13
  CLUS_4             0              22
D82V2, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             0              11
  CLUS_2             0              50
  CLUS_3             3              57
D82V3, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             1              55
  CLUS_2             2              65
  CLUS_3             3              52
D82V4, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             1              26
  CLUS_2             0              30
  CLUS_3             2              15
D82V5, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             1              33
  CLUS_2             2              45
  CLUS_3             1              30
D82V6, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             2              29
  CLUS_2             0              27
  CLUS_3             2              31
  CLUS_4             0              21
D82V7, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             1              34
  CLUS_2             0              62
  CLUS_3             3              50
  CLUS_4             2              26
D82V8, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             0              64
  CLUS_2             1              29
  CLUS_3             5              79
D82V9, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             5             100
  CLUS_2             1              26
  CLUS_3             0              30
D82V10, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             2              37
  CLUS_2             4              85
  CLUS_3             0              34

Clustering(83) Variable = OR5AC2 MUTATION ANALYSIS
D83V1, multiclass
        clus
vv       OR5AC2 MUTATED OR5AC2 WILD-TYPE
  CLUS_1              1               37
  CLUS_2              1               45
  CLUS_3              1               14
  CLUS_4              2               20
D83V2, multiclass
        clus
vv       OR5AC2 MUTATED OR5AC2 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              1               49
  CLUS_3              4               56
D83V3, multiclass
        clus
vv       OR5AC2 MUTATED OR5AC2 WILD-TYPE
  CLUS_1              2               54
  CLUS_2              2               65
  CLUS_3              3               52
D83V4, multiclass
        clus
vv       OR5AC2 MUTATED OR5AC2 WILD-TYPE
  CLUS_1              1               26
  CLUS_2              2               28
  CLUS_3              0               17
D83V5, multiclass
        clus
vv       OR5AC2 MUTATED OR5AC2 WILD-TYPE
  CLUS_1              1               33
  CLUS_2              2               45
  CLUS_3              1               30
D83V6, multiclass
        clus
vv       OR5AC2 MUTATED OR5AC2 WILD-TYPE
  CLUS_1              1               30
  CLUS_2              1               26
  CLUS_3              1               32
  CLUS_4              1               20
D83V7, multiclass
        clus
vv       OR5AC2 MUTATED OR5AC2 WILD-TYPE
  CLUS_1              1               34
  CLUS_2              1               61
  CLUS_3              3               50
  CLUS_4              2               26
D83V8, multiclass
        clus
vv       OR5AC2 MUTATED OR5AC2 WILD-TYPE
  CLUS_1              1               63
  CLUS_2              2               28
  CLUS_3              4               80
D83V9, multiclass
        clus
vv       OR5AC2 MUTATED OR5AC2 WILD-TYPE
  CLUS_1              3              102
  CLUS_2              2               25
  CLUS_3              0               30
D83V10, multiclass
        clus
vv       OR5AC2 MUTATED OR5AC2 WILD-TYPE
  CLUS_1              3               36
  CLUS_2              2               87
  CLUS_3              0               34

Clustering(84) Variable = GABRA2 MUTATION ANALYSIS
D84V1, multiclass
        clus
vv       GABRA2 MUTATED GABRA2 WILD-TYPE
  CLUS_1              1               37
  CLUS_2              3               43
  CLUS_3              3               12
  CLUS_4              1               21
D84V2, multiclass
        clus
vv       GABRA2 MUTATED GABRA2 WILD-TYPE
  CLUS_1              1               10
  CLUS_2              3               47
  CLUS_3              4               56
D84V3, multiclass
        clus
vv       GABRA2 MUTATED GABRA2 WILD-TYPE
  CLUS_1              3               53
  CLUS_2              6               61
  CLUS_3              3               52
D84V4, multiclass
        clus
vv       GABRA2 MUTATED GABRA2 WILD-TYPE
  CLUS_1              2               25
  CLUS_2              1               29
  CLUS_3              1               16
D84V5, multiclass
        clus
vv       GABRA2 MUTATED GABRA2 WILD-TYPE
  CLUS_1              2               32
  CLUS_2              4               43
  CLUS_3              2               29
D84V6, multiclass
        clus
vv       GABRA2 MUTATED GABRA2 WILD-TYPE
  CLUS_1              2               29
  CLUS_2              2               25
  CLUS_3              4               29
  CLUS_4              0               21
D84V7, multiclass
        clus
vv       GABRA2 MUTATED GABRA2 WILD-TYPE
  CLUS_1              2               33
  CLUS_2              1               61
  CLUS_3              5               48
  CLUS_4              4               24
D84V8, multiclass
        clus
vv       GABRA2 MUTATED GABRA2 WILD-TYPE
  CLUS_1              1               63
  CLUS_2              2               28
  CLUS_3              9               75
D84V9, multiclass
        clus
vv       GABRA2 MUTATED GABRA2 WILD-TYPE
  CLUS_1              5              100
  CLUS_2              3               24
  CLUS_3              1               29
D84V10, multiclass
        clus
vv       GABRA2 MUTATED GABRA2 WILD-TYPE
  CLUS_1              2               37
  CLUS_2              6               83
  CLUS_3              1               33

Clustering(85) Variable = GBA3 MUTATION ANALYSIS
D85V1, multiclass
        clus
vv       GBA3 MUTATED GBA3 WILD-TYPE
  CLUS_1            0             38
  CLUS_2            5             41
  CLUS_3            1             14
  CLUS_4            1             21
D85V2, multiclass
        clus
vv       GBA3 MUTATED GBA3 WILD-TYPE
  CLUS_1            1             10
  CLUS_2            5             45
  CLUS_3            1             59
D85V3, multiclass
        clus
vv       GBA3 MUTATED GBA3 WILD-TYPE
  CLUS_1            1             55
  CLUS_2            6             61
  CLUS_3            2             53
D85V4, multiclass
        clus
vv       GBA3 MUTATED GBA3 WILD-TYPE
  CLUS_1            1             26
  CLUS_2            3             27
  CLUS_3            0             17
D85V5, multiclass
        clus
vv       GBA3 MUTATED GBA3 WILD-TYPE
  CLUS_1            0             34
  CLUS_2            2             45
  CLUS_3            2             29
D85V6, multiclass
        clus
vv       GBA3 MUTATED GBA3 WILD-TYPE
  CLUS_1            0             31
  CLUS_2            2             25
  CLUS_3            2             31
  CLUS_4            0             21
D85V7, multiclass
        clus
vv       GBA3 MUTATED GBA3 WILD-TYPE
  CLUS_1            0             35
  CLUS_2            5             57
  CLUS_3            4             49
  CLUS_4            0             28
D85V8, multiclass
        clus
vv       GBA3 MUTATED GBA3 WILD-TYPE
  CLUS_1            5             59
  CLUS_2            2             28
  CLUS_3            2             82
D85V9, multiclass
        clus
vv       GBA3 MUTATED GBA3 WILD-TYPE
  CLUS_1            4            101
  CLUS_2            0             27
  CLUS_3            3             27
D85V10, multiclass
        clus
vv       GBA3 MUTATED GBA3 WILD-TYPE
  CLUS_1            2             37
  CLUS_2            2             87
  CLUS_3            3             31

Clustering(86) Variable = KIRREL2 MUTATION ANALYSIS
D86V1, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CLUS_1               2                36
  CLUS_2               3                43
  CLUS_3               2                13
  CLUS_4               1                21
D86V2, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CLUS_1               1                10
  CLUS_2               3                47
  CLUS_3               4                56
D86V3, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CLUS_1               2                54
  CLUS_2               6                61
  CLUS_3               3                52
D86V4, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CLUS_1               2                25
  CLUS_2               3                27
  CLUS_3               0                17
D86V5, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CLUS_1               2                32
  CLUS_2               2                45
  CLUS_3               0                31
D86V6, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CLUS_1               2                29
  CLUS_2               1                26
  CLUS_3               1                32
  CLUS_4               0                21
D86V7, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CLUS_1               0                35
  CLUS_2               5                57
  CLUS_3               3                50
  CLUS_4               3                25
D86V8, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CLUS_1               5                59
  CLUS_2               1                29
  CLUS_3               5                79
D86V9, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CLUS_1               8                97
  CLUS_2               1                26
  CLUS_3               1                29
D86V10, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CLUS_1               1                38
  CLUS_2               5                84
  CLUS_3               4                30

Clustering(87) Variable = MS4A14 MUTATION ANALYSIS
D87V1, multiclass
        clus
vv       MS4A14 MUTATED MS4A14 WILD-TYPE
  CLUS_1              4               34
  CLUS_2              3               43
  CLUS_3              1               14
  CLUS_4              3               19
D87V2, multiclass
        clus
vv       MS4A14 MUTATED MS4A14 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              4               46
  CLUS_3              7               53
D87V3, multiclass
        clus
vv       MS4A14 MUTATED MS4A14 WILD-TYPE
  CLUS_1              3               53
  CLUS_2              5               62
  CLUS_3              4               51
D87V4, multiclass
        clus
vv       MS4A14 MUTATED MS4A14 WILD-TYPE
  CLUS_1              1               26
  CLUS_2              2               28
  CLUS_3              0               17
D87V5, multiclass
        clus
vv       MS4A14 MUTATED MS4A14 WILD-TYPE
  CLUS_1              0               34
  CLUS_2              3               44
  CLUS_3              1               30
D87V6, multiclass
        clus
vv       MS4A14 MUTATED MS4A14 WILD-TYPE
  CLUS_1              0               31
  CLUS_2              1               26
  CLUS_3              3               30
  CLUS_4              0               21
D87V7, multiclass
        clus
vv       MS4A14 MUTATED MS4A14 WILD-TYPE
  CLUS_1              2               33
  CLUS_2              5               57
  CLUS_3              5               48
  CLUS_4              0               28
D87V8, multiclass
        clus
vv       MS4A14 MUTATED MS4A14 WILD-TYPE
  CLUS_1              5               59
  CLUS_2              2               28
  CLUS_3              5               79
D87V9, multiclass
        clus
vv       MS4A14 MUTATED MS4A14 WILD-TYPE
  CLUS_1              9               96
  CLUS_2              0               27
  CLUS_3              0               30
D87V10, multiclass
        clus
vv       MS4A14 MUTATED MS4A14 WILD-TYPE
  CLUS_1              3               36
  CLUS_2              6               83
  CLUS_3              0               34

Clustering(88) Variable = TMEM195 MUTATION ANALYSIS
D88V1, multiclass
        clus
vv       TMEM195 MUTATED TMEM195 WILD-TYPE
  CLUS_1               1                37
  CLUS_2               1                45
  CLUS_3               1                14
  CLUS_4               1                21
D88V2, multiclass
        clus
vv       TMEM195 MUTATED TMEM195 WILD-TYPE
  CLUS_1               1                10
  CLUS_2               1                49
  CLUS_3               2                58
D88V3, multiclass
        clus
vv       TMEM195 MUTATED TMEM195 WILD-TYPE
  CLUS_1               4                52
  CLUS_2               2                65
  CLUS_3               2                53
D88V4, multiclass
        clus
vv       TMEM195 MUTATED TMEM195 WILD-TYPE
  CLUS_1               2                25
  CLUS_2               2                28
  CLUS_3               1                16
D88V5, multiclass
        clus
vv       TMEM195 MUTATED TMEM195 WILD-TYPE
  CLUS_1               2                32
  CLUS_2               1                46
  CLUS_3               2                29
D88V6, multiclass
        clus
vv       TMEM195 MUTATED TMEM195 WILD-TYPE
  CLUS_1               2                29
  CLUS_2               2                25
  CLUS_3               1                32
  CLUS_4               0                21
D88V7, multiclass
        clus
vv       TMEM195 MUTATED TMEM195 WILD-TYPE
  CLUS_1               1                34
  CLUS_2               2                60
  CLUS_3               2                51
  CLUS_4               3                25
D88V8, multiclass
        clus
vv       TMEM195 MUTATED TMEM195 WILD-TYPE
  CLUS_1               2                62
  CLUS_2               1                29
  CLUS_3               5                79
D88V9, multiclass
        clus
vv       TMEM195 MUTATED TMEM195 WILD-TYPE
  CLUS_1               6                99
  CLUS_2               1                26
  CLUS_3               1                29
D88V10, multiclass
        clus
vv       TMEM195 MUTATED TMEM195 WILD-TYPE
  CLUS_1               1                38
  CLUS_2               6                83
  CLUS_3               1                33

Clustering(89) Variable = TMEM90A MUTATION ANALYSIS
D89V1, multiclass
        clus
vv       TMEM90A MUTATED TMEM90A WILD-TYPE
  CLUS_1               2                36
  CLUS_2               1                45
  CLUS_3               0                15
  CLUS_4               1                21
D89V2, multiclass
        clus
vv       TMEM90A MUTATED TMEM90A WILD-TYPE
  CLUS_1               0                11
  CLUS_2               2                48
  CLUS_3               2                58
D89V3, multiclass
        clus
vv       TMEM90A MUTATED TMEM90A WILD-TYPE
  CLUS_1               1                55
  CLUS_2               2                65
  CLUS_3               1                54
D89V4, multiclass
D89V5, multiclass
D89V6, multiclass
D89V7, multiclass
        clus
vv       TMEM90A MUTATED TMEM90A WILD-TYPE
  CLUS_1               1                34
  CLUS_2               2                60
  CLUS_3               1                52
  CLUS_4               0                28
D89V8, multiclass
        clus
vv       TMEM90A MUTATED TMEM90A WILD-TYPE
  CLUS_1               2                62
  CLUS_2               0                30
  CLUS_3               2                82
D89V9, multiclass
        clus
vv       TMEM90A MUTATED TMEM90A WILD-TYPE
  CLUS_1               2               103
  CLUS_2               1                26
  CLUS_3               0                30
D89V10, multiclass
        clus
vv       TMEM90A MUTATED TMEM90A WILD-TYPE
  CLUS_1               0                39
  CLUS_2               2                87
  CLUS_3               1                33

Clustering(90) Variable = ZFP42 MUTATION ANALYSIS
D90V1, multiclass
        clus
vv       ZFP42 MUTATED ZFP42 WILD-TYPE
  CLUS_1             3              35
  CLUS_2             0              46
  CLUS_3             1              14
  CLUS_4             2              20
D90V2, multiclass
        clus
vv       ZFP42 MUTATED ZFP42 WILD-TYPE
  CLUS_1             2               9
  CLUS_2             1              49
  CLUS_3             3              57
D90V3, multiclass
        clus
vv       ZFP42 MUTATED ZFP42 WILD-TYPE
  CLUS_1             2              54
  CLUS_2             3              64
  CLUS_3             3              52
D90V4, multiclass
[1] "Remove cluster labels:" "ZFP42 MUTATED"         
clus
  ZFP42 MUTATED ZFP42 WILD-TYPE 
              2              72 
     TCGA-18-3417      TCGA-18-4721      TCGA-18-5595      TCGA-21-5782 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-21-5784      TCGA-21-5786      TCGA-21-5787      TCGA-22-4593 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4613      TCGA-22-5472 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-5473      TCGA-22-5474      TCGA-22-5477      TCGA-22-5478 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-5480      TCGA-22-5482      TCGA-22-5485      TCGA-22-5489 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-5491      TCGA-22-5492      TCGA-33-4566      TCGA-33-4582 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-33-4583      TCGA-33-4586      TCGA-33-6737      TCGA-34-5231 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-34-5232      TCGA-34-5234      TCGA-34-5236      TCGA-34-5239 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-34-5240      TCGA-34-5241      TCGA-34-5927      TCGA-34-5928 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-34-5929      TCGA-37-5819      TCGA-39-5016      TCGA-39-5019 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-39-5021      TCGA-39-5022      TCGA-39-5024      TCGA-39-5027 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-39-5028      TCGA-39-5029      TCGA-39-5030      TCGA-39-5031 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-39-5035      TCGA-39-5036      TCGA-39-5037      TCGA-39-5039 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-43-5668      TCGA-43-6143      TCGA-43-6647      TCGA-43-6770 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-43-6771      TCGA-46-6025      TCGA-46-6026      TCGA-56-5897 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-56-5898      TCGA-56-6545      TCGA-56-6546      TCGA-60-2709 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-63-5128      TCGA-63-5131      TCGA-63-6202      TCGA-70-6722 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-70-6723      TCGA-85-6175      TCGA-85-6560      TCGA-85-6561 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
D90V5, multiclass
        clus
vv       ZFP42 MUTATED ZFP42 WILD-TYPE
  CLUS_1             2              32
  CLUS_2             2              45
  CLUS_3             1              30
D90V6, multiclass
        clus
vv       ZFP42 MUTATED ZFP42 WILD-TYPE
  CLUS_1             3              28
  CLUS_2             1              26
  CLUS_3             1              32
  CLUS_4             0              21
D90V7, multiclass
        clus
vv       ZFP42 MUTATED ZFP42 WILD-TYPE
  CLUS_1             4              31
  CLUS_2             1              61
  CLUS_3             2              51
  CLUS_4             1              27
D90V8, multiclass
        clus
vv       ZFP42 MUTATED ZFP42 WILD-TYPE
  CLUS_1             3              61
  CLUS_2             1              29
  CLUS_3             4              80
D90V9, multiclass
        clus
vv       ZFP42 MUTATED ZFP42 WILD-TYPE
  CLUS_1             7              98
  CLUS_2             0              27
  CLUS_3             1              29
D90V10, multiclass
        clus
vv       ZFP42 MUTATED ZFP42 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             7              82
  CLUS_3             1              33

Clustering(91) Variable = LEPROT MUTATION ANALYSIS
D91V1, multiclass
        clus
vv       LEPROT MUTATED LEPROT WILD-TYPE
  CLUS_1              1               37
  CLUS_2              1               45
  CLUS_3              2               13
  CLUS_4              0               22
D91V2, multiclass
        clus
vv       LEPROT MUTATED LEPROT WILD-TYPE
  CLUS_1              0               11
  CLUS_2              1               49
  CLUS_3              3               57
D91V3, multiclass
        clus
vv       LEPROT MUTATED LEPROT WILD-TYPE
  CLUS_1              2               54
  CLUS_2              1               66
  CLUS_3              1               54
D91V4, multiclass
D91V5, multiclass
[1] "Remove cluster labels:" "LEPROT MUTATED"        
clus
  LEPROT MUTATED LEPROT WILD-TYPE 
               1              111 
      TCGA-18-4721       TCGA-18-5592       TCGA-18-5595       TCGA-21-1070 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-21-1071       TCGA-21-1076       TCGA-21-1078       TCGA-21-1081 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-1011       TCGA-22-4591       TCGA-22-4607       TCGA-22-5471 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-5472       TCGA-22-5473       TCGA-22-5474       TCGA-22-5477 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-5478       TCGA-22-5480       TCGA-22-5482       TCGA-22-5485 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-5489       TCGA-22-5491       TCGA-22-5492       TCGA-33-4532 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4586 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-33-6737       TCGA-34-2596       TCGA-34-2608       TCGA-34-5231 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-34-5232       TCGA-34-5234       TCGA-34-5236       TCGA-34-5239 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-34-5241       TCGA-34-5927       TCGA-34-5928       TCGA-34-5929 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-39-5037       TCGA-43-2578       TCGA-43-3394       TCGA-43-5668 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-43-6143       TCGA-43-6770       TCGA-43-6771       TCGA-46-6025 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-46-6026       TCGA-56-5897       TCGA-56-5898       TCGA-56-6545 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2708       TCGA-60-2709 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2710       TCGA-60-2711       TCGA-60-2712       TCGA-60-2713 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2719       TCGA-60-2720       TCGA-60-2721       TCGA-60-2724 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-63-5128       TCGA-63-5131 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-63-6202       TCGA-66-2758       TCGA-66-2766       TCGA-66-2767 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2773       TCGA-66-2777 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2778       TCGA-66-2781       TCGA-66-2782       TCGA-66-2783 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2785       TCGA-66-2788       TCGA-66-2791       TCGA-66-2794 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2795       TCGA-66-2800       TCGA-70-6722       TCGA-70-6723 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-85-6175       TCGA-85-6560       TCGA-85-6561 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
D91V6, multiclass
[1] "Remove cluster labels:" "LEPROT MUTATED"        
clus
  LEPROT MUTATED LEPROT WILD-TYPE 
               1              111 
      TCGA-18-4721       TCGA-18-5592       TCGA-18-5595       TCGA-21-1070 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-21-1071       TCGA-21-1076       TCGA-21-1078       TCGA-21-1081 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-1011       TCGA-22-4591       TCGA-22-4607       TCGA-22-5471 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-5472       TCGA-22-5473       TCGA-22-5474       TCGA-22-5477 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-5478       TCGA-22-5480       TCGA-22-5482       TCGA-22-5485 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-5489       TCGA-22-5491       TCGA-22-5492       TCGA-33-4532 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4586 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-33-6737       TCGA-34-2596       TCGA-34-2608       TCGA-34-5231 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-34-5232       TCGA-34-5234       TCGA-34-5236       TCGA-34-5239 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-34-5241       TCGA-34-5927       TCGA-34-5928       TCGA-34-5929 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-39-5037       TCGA-43-2578       TCGA-43-3394       TCGA-43-5668 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-43-6143       TCGA-43-6770       TCGA-43-6771       TCGA-46-6025 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-46-6026       TCGA-56-5897       TCGA-56-5898       TCGA-56-6545 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2708       TCGA-60-2709 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2710       TCGA-60-2711       TCGA-60-2712       TCGA-60-2713 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2719       TCGA-60-2720       TCGA-60-2721       TCGA-60-2724 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-63-5128       TCGA-63-5131 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-63-6202       TCGA-66-2758       TCGA-66-2766       TCGA-66-2767 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2773       TCGA-66-2777 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2778       TCGA-66-2781       TCGA-66-2782       TCGA-66-2783 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2785       TCGA-66-2788       TCGA-66-2791       TCGA-66-2794 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2795       TCGA-66-2800       TCGA-70-6722       TCGA-70-6723 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-85-6175       TCGA-85-6560       TCGA-85-6561 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
D91V7, multiclass
        clus
vv       LEPROT MUTATED LEPROT WILD-TYPE
  CLUS_1              0               35
  CLUS_2              1               61
  CLUS_3              2               51
  CLUS_4              1               27
D91V8, multiclass
        clus
vv       LEPROT MUTATED LEPROT WILD-TYPE
  CLUS_1              1               63
  CLUS_2              0               30
  CLUS_3              3               81
D91V9, multiclass
        clus
vv       LEPROT MUTATED LEPROT WILD-TYPE
  CLUS_1              3              102
  CLUS_2              0               27
  CLUS_3              0               30
D91V10, multiclass
        clus
vv       LEPROT MUTATED LEPROT WILD-TYPE
  CLUS_1              1               38
  CLUS_2              1               88
  CLUS_3              1               33

Clustering(92) Variable = LRRTM3 MUTATION ANALYSIS
D92V1, multiclass
        clus
vv       LRRTM3 MUTATED LRRTM3 WILD-TYPE
  CLUS_1              1               37
  CLUS_2              3               43
  CLUS_3              1               14
  CLUS_4              0               22
D92V2, multiclass
        clus
vv       LRRTM3 MUTATED LRRTM3 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              3               47
  CLUS_3              2               58
D92V3, multiclass
        clus
vv       LRRTM3 MUTATED LRRTM3 WILD-TYPE
  CLUS_1              1               55
  CLUS_2              6               61
  CLUS_3              1               54
D92V4, multiclass
        clus
vv       LRRTM3 MUTATED LRRTM3 WILD-TYPE
  CLUS_1              1               26
  CLUS_2              2               28
  CLUS_3              1               16
D92V5, multiclass
        clus
vv       LRRTM3 MUTATED LRRTM3 WILD-TYPE
  CLUS_1              1               33
  CLUS_2              4               43
  CLUS_3              1               30
D92V6, multiclass
        clus
vv       LRRTM3 MUTATED LRRTM3 WILD-TYPE
  CLUS_1              0               31
  CLUS_2              2               25
  CLUS_3              3               30
  CLUS_4              1               20
D92V7, multiclass
        clus
vv       LRRTM3 MUTATED LRRTM3 WILD-TYPE
  CLUS_1              3               32
  CLUS_2              3               59
  CLUS_3              1               52
  CLUS_4              1               27
D92V8, multiclass
        clus
vv       LRRTM3 MUTATED LRRTM3 WILD-TYPE
  CLUS_1              4               60
  CLUS_2              0               30
  CLUS_3              4               80
D92V9, multiclass
        clus
vv       LRRTM3 MUTATED LRRTM3 WILD-TYPE
  CLUS_1              5              100
  CLUS_2              1               26
  CLUS_3              2               28
D92V10, multiclass
        clus
vv       LRRTM3 MUTATED LRRTM3 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              4               85
  CLUS_3              3               31

Clustering(93) Variable = OR4N4 MUTATION ANALYSIS
D93V1, multiclass
        clus
vv       OR4N4 MUTATED OR4N4 WILD-TYPE
  CLUS_1             2              36
  CLUS_2             3              43
  CLUS_3             2              13
  CLUS_4             1              21
D93V2, multiclass
        clus
vv       OR4N4 MUTATED OR4N4 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             3              47
  CLUS_3             5              55
D93V3, multiclass
        clus
vv       OR4N4 MUTATED OR4N4 WILD-TYPE
  CLUS_1             2              54
  CLUS_2             6              61
  CLUS_3             1              54
D93V4, multiclass
[1] "Remove cluster labels:" "OR4N4 MUTATED"         
clus
  OR4N4 MUTATED OR4N4 WILD-TYPE 
              2              72 
     TCGA-18-3417      TCGA-18-4721      TCGA-18-5592      TCGA-18-5595 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4599      TCGA-22-4601      TCGA-22-5471 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-5472      TCGA-22-5473      TCGA-22-5474      TCGA-22-5477 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-5478      TCGA-22-5480      TCGA-22-5482      TCGA-22-5485 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-33-4566 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-33-4582      TCGA-33-4583      TCGA-33-4586      TCGA-33-6737 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-34-5231      TCGA-34-5232      TCGA-34-5234      TCGA-34-5236 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-34-5239      TCGA-34-5240      TCGA-34-5241      TCGA-34-5927 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-34-5928      TCGA-34-5929      TCGA-37-5819      TCGA-39-5016 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-39-5019      TCGA-39-5021      TCGA-39-5022      TCGA-39-5024 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-39-5027      TCGA-39-5028      TCGA-39-5029      TCGA-39-5030 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-39-5031      TCGA-39-5035      TCGA-39-5036      TCGA-39-5037 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-39-5039      TCGA-43-5668      TCGA-43-6143      TCGA-43-6647 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-43-6770      TCGA-43-6771      TCGA-46-6025      TCGA-46-6026 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-56-5897      TCGA-56-5898      TCGA-56-6545      TCGA-56-6546 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-60-2709      TCGA-63-5128      TCGA-63-5131      TCGA-63-6202 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-70-6722      TCGA-85-6175      TCGA-85-6560      TCGA-85-6561 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
D93V5, multiclass
        clus
vv       OR4N4 MUTATED OR4N4 WILD-TYPE
  CLUS_1             2              32
  CLUS_2             2              45
  CLUS_3             0              31
D93V6, multiclass
        clus
vv       OR4N4 MUTATED OR4N4 WILD-TYPE
  CLUS_1             1              30
  CLUS_2             1              26
  CLUS_3             2              31
  CLUS_4             0              21
D93V7, multiclass
        clus
vv       OR4N4 MUTATED OR4N4 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             5              57
  CLUS_3             1              52
  CLUS_4             1              27
D93V8, multiclass
        clus
vv       OR4N4 MUTATED OR4N4 WILD-TYPE
  CLUS_1             6              58
  CLUS_2             0              30
  CLUS_3             3              81
D93V9, multiclass
        clus
vv       OR4N4 MUTATED OR4N4 WILD-TYPE
  CLUS_1             5             100
  CLUS_2             1              26
  CLUS_3             2              28
D93V10, multiclass
        clus
vv       OR4N4 MUTATED OR4N4 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             4              85
  CLUS_3             2              32

Clustering(94) Variable = SNAI1 MUTATION ANALYSIS
D94V1, multiclass
        clus
vv       SNAI1 MUTATED SNAI1 WILD-TYPE
  CLUS_1             1              37
  CLUS_2             1              45
  CLUS_3             1              14
  CLUS_4             1              21
D94V2, multiclass
        clus
vv       SNAI1 MUTATED SNAI1 WILD-TYPE
  CLUS_1             1              10
  CLUS_2             1              49
  CLUS_3             2              58
D94V3, multiclass
        clus
vv       SNAI1 MUTATED SNAI1 WILD-TYPE
  CLUS_1             1              55
  CLUS_2             1              66
  CLUS_3             2              53
D94V4, multiclass
D94V5, multiclass
[1] "Remove cluster labels:" "SNAI1 MUTATED"         
clus
  SNAI1 MUTATED SNAI1 WILD-TYPE 
              1             111 
     TCGA-18-4721      TCGA-18-5592      TCGA-18-5595      TCGA-21-1070 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-21-1071      TCGA-21-1076      TCGA-21-1078      TCGA-21-1081 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-1011      TCGA-22-4591      TCGA-22-4607      TCGA-22-5471 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-5472      TCGA-22-5473      TCGA-22-5474      TCGA-22-5477 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-5478      TCGA-22-5480      TCGA-22-5482      TCGA-22-5485 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-33-4532 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4586 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-33-6737      TCGA-34-2596      TCGA-34-2608      TCGA-34-5231 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-34-5232      TCGA-34-5234      TCGA-34-5236      TCGA-34-5239 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-34-5241      TCGA-34-5927      TCGA-34-5928      TCGA-34-5929 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-39-5016      TCGA-39-5019      TCGA-39-5021      TCGA-39-5022 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-39-5024      TCGA-39-5027      TCGA-39-5028      TCGA-39-5029 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-39-5030      TCGA-39-5031      TCGA-39-5035      TCGA-39-5037 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-43-2578      TCGA-43-3394      TCGA-43-5668      TCGA-43-6143 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-43-6770      TCGA-43-6771      TCGA-46-6025      TCGA-46-6026 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-56-5897      TCGA-56-5898      TCGA-56-6545      TCGA-56-6546 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2708      TCGA-60-2709      TCGA-60-2710 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2711      TCGA-60-2712      TCGA-60-2713      TCGA-60-2719 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2720      TCGA-60-2721      TCGA-60-2724      TCGA-60-2725 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2726      TCGA-63-5128      TCGA-63-5131      TCGA-63-6202 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2727      TCGA-66-2758      TCGA-66-2766      TCGA-66-2767 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2773      TCGA-66-2777 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2778      TCGA-66-2781      TCGA-66-2782      TCGA-66-2783 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2785      TCGA-66-2788      TCGA-66-2791      TCGA-66-2794 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2795      TCGA-66-2800      TCGA-70-6722      TCGA-70-6723 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-85-6175      TCGA-85-6560      TCGA-85-6561 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
D94V6, multiclass
[1] "Remove cluster labels:" "SNAI1 MUTATED"         
clus
  SNAI1 MUTATED SNAI1 WILD-TYPE 
              1             111 
     TCGA-18-4721      TCGA-18-5592      TCGA-18-5595      TCGA-21-1070 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-21-1071      TCGA-21-1076      TCGA-21-1078      TCGA-21-1081 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-1011      TCGA-22-4591      TCGA-22-4607      TCGA-22-5471 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-5472      TCGA-22-5473      TCGA-22-5474      TCGA-22-5477 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-5478      TCGA-22-5480      TCGA-22-5482      TCGA-22-5485 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-33-4532 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4586 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-33-6737      TCGA-34-2596      TCGA-34-2608      TCGA-34-5231 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-34-5232      TCGA-34-5234      TCGA-34-5236      TCGA-34-5239 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-34-5241      TCGA-34-5927      TCGA-34-5928      TCGA-34-5929 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-39-5016      TCGA-39-5019      TCGA-39-5021      TCGA-39-5022 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-39-5024      TCGA-39-5027      TCGA-39-5028      TCGA-39-5029 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-39-5030      TCGA-39-5031      TCGA-39-5035      TCGA-39-5037 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-43-2578      TCGA-43-3394      TCGA-43-5668      TCGA-43-6143 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-43-6770      TCGA-43-6771      TCGA-46-6025      TCGA-46-6026 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-56-5897      TCGA-56-5898      TCGA-56-6545      TCGA-56-6546 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2708      TCGA-60-2709      TCGA-60-2710 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2711      TCGA-60-2712      TCGA-60-2713      TCGA-60-2719 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2720      TCGA-60-2721      TCGA-60-2724      TCGA-60-2725 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2726      TCGA-63-5128      TCGA-63-5131      TCGA-63-6202 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2727      TCGA-66-2758      TCGA-66-2766      TCGA-66-2767 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2773      TCGA-66-2777 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2778      TCGA-66-2781      TCGA-66-2782      TCGA-66-2783 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2785      TCGA-66-2788      TCGA-66-2791      TCGA-66-2794 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2795      TCGA-66-2800      TCGA-70-6722      TCGA-70-6723 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-85-6175      TCGA-85-6560      TCGA-85-6561 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
D94V7, multiclass
        clus
vv       SNAI1 MUTATED SNAI1 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             0              62
  CLUS_3             3              50
  CLUS_4             0              28
D94V8, multiclass
        clus
vv       SNAI1 MUTATED SNAI1 WILD-TYPE
  CLUS_1             1              63
  CLUS_2             1              29
  CLUS_3             2              82
D94V9, multiclass
        clus
vv       SNAI1 MUTATED SNAI1 WILD-TYPE
  CLUS_1             4             101
  CLUS_2             0              27
  CLUS_3             0              30
D94V10, multiclass
        clus
vv       SNAI1 MUTATED SNAI1 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             3              86
  CLUS_3             0              34

Clustering(95) Variable = APOBEC1 MUTATION ANALYSIS
D95V1, multiclass
        clus
vv       APOBEC1 MUTATED APOBEC1 WILD-TYPE
  CLUS_1               0                38
  CLUS_2               1                45
  CLUS_3               2                13
  CLUS_4               0                22
D95V2, multiclass
        clus
vv       APOBEC1 MUTATED APOBEC1 WILD-TYPE
  CLUS_1               1                10
  CLUS_2               1                49
  CLUS_3               1                59
D95V3, multiclass
        clus
vv       APOBEC1 MUTATED APOBEC1 WILD-TYPE
  CLUS_1               3                53
  CLUS_2               0                67
  CLUS_3               4                51
D95V4, multiclass
        clus
vv       APOBEC1 MUTATED APOBEC1 WILD-TYPE
  CLUS_1               4                23
  CLUS_2               0                30
  CLUS_3               0                17
D95V5, multiclass
        clus
vv       APOBEC1 MUTATED APOBEC1 WILD-TYPE
  CLUS_1               2                32
  CLUS_2               2                45
  CLUS_3               1                30
D95V6, multiclass
        clus
vv       APOBEC1 MUTATED APOBEC1 WILD-TYPE
  CLUS_1               3                28
  CLUS_2               0                27
  CLUS_3               2                31
  CLUS_4               0                21
D95V7, multiclass
        clus
vv       APOBEC1 MUTATED APOBEC1 WILD-TYPE
  CLUS_1               1                34
  CLUS_2               1                61
  CLUS_3               3                50
  CLUS_4               2                26
D95V8, multiclass
        clus
vv       APOBEC1 MUTATED APOBEC1 WILD-TYPE
  CLUS_1               1                63
  CLUS_2               1                29
  CLUS_3               5                79
D95V9, multiclass
        clus
vv       APOBEC1 MUTATED APOBEC1 WILD-TYPE
  CLUS_1               3               102
  CLUS_2               3                24
  CLUS_3               0                30
D95V10, multiclass
        clus
vv       APOBEC1 MUTATED APOBEC1 WILD-TYPE
  CLUS_1               1                38
  CLUS_2               4                85
  CLUS_3               1                33

Clustering(96) Variable = BAGE2 MUTATION ANALYSIS
D96V1, multiclass
        clus
vv       BAGE2 MUTATED BAGE2 WILD-TYPE
  CLUS_1             0              38
  CLUS_2             1              45
  CLUS_3             1              14
  CLUS_4             1              21
D96V2, multiclass
        clus
vv       BAGE2 MUTATED BAGE2 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             2              48
  CLUS_3             1              59
D96V3, multiclass
        clus
vv       BAGE2 MUTATED BAGE2 WILD-TYPE
  CLUS_1             1              55
  CLUS_2             2              65
  CLUS_3             0              55
D96V4, multiclass
D96V5, multiclass
[1] "Remove cluster labels:" "BAGE2 MUTATED"         
clus
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              2             110 
     TCGA-18-4721      TCGA-18-5592      TCGA-18-5595      TCGA-21-1070 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-21-1071      TCGA-21-1076      TCGA-21-1078      TCGA-21-1081 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-1011      TCGA-22-4591      TCGA-22-4607      TCGA-22-5471 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-5472      TCGA-22-5473      TCGA-22-5474      TCGA-22-5477 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-5478      TCGA-22-5480      TCGA-22-5482      TCGA-22-5485 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-33-4532 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4586 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-33-6737      TCGA-34-2596      TCGA-34-2608      TCGA-34-5231 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-34-5232      TCGA-34-5234      TCGA-34-5236      TCGA-34-5239 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-34-5241      TCGA-34-5927      TCGA-34-5928      TCGA-34-5929 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4135      TCGA-37-4141      TCGA-37-5819 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-39-5016      TCGA-39-5019      TCGA-39-5021      TCGA-39-5022 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-39-5024      TCGA-39-5027      TCGA-39-5028      TCGA-39-5029 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-39-5030      TCGA-39-5031      TCGA-39-5035      TCGA-39-5037 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-43-2578      TCGA-43-3394      TCGA-43-5668      TCGA-43-6143 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-43-6770      TCGA-43-6771      TCGA-46-6025      TCGA-46-6026 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-56-5897      TCGA-56-5898      TCGA-56-6545      TCGA-56-6546 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2708      TCGA-60-2709      TCGA-60-2710 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-60-2711      TCGA-60-2712      TCGA-60-2713      TCGA-60-2719 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-60-2720      TCGA-60-2721      TCGA-60-2724      TCGA-60-2726 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-63-5128      TCGA-63-5131      TCGA-63-6202      TCGA-66-2727 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2758      TCGA-66-2766      TCGA-66-2767      TCGA-66-2768 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2770      TCGA-66-2773      TCGA-66-2777      TCGA-66-2778 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2781      TCGA-66-2782      TCGA-66-2783      TCGA-66-2785 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2788      TCGA-66-2791      TCGA-66-2794      TCGA-66-2795 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2800      TCGA-70-6722      TCGA-70-6723      TCGA-85-6175 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-85-6560      TCGA-85-6561 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
D96V6, multiclass
[1] "Remove cluster labels:" "BAGE2 MUTATED"         
clus
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              2             110 
     TCGA-18-4721      TCGA-18-5592      TCGA-18-5595      TCGA-21-1070 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-21-1071      TCGA-21-1076      TCGA-21-1078      TCGA-21-1081 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-1011      TCGA-22-4591      TCGA-22-4607      TCGA-22-5471 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-5472      TCGA-22-5473      TCGA-22-5474      TCGA-22-5477 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-5478      TCGA-22-5480      TCGA-22-5482      TCGA-22-5485 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-33-4532 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4586 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-33-6737      TCGA-34-2596      TCGA-34-2608      TCGA-34-5231 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-34-5232      TCGA-34-5234      TCGA-34-5236      TCGA-34-5239 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-34-5241      TCGA-34-5927      TCGA-34-5928      TCGA-34-5929 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4135      TCGA-37-4141      TCGA-37-5819 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-39-5016      TCGA-39-5019      TCGA-39-5021      TCGA-39-5022 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-39-5024      TCGA-39-5027      TCGA-39-5028      TCGA-39-5029 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-39-5030      TCGA-39-5031      TCGA-39-5035      TCGA-39-5037 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-43-2578      TCGA-43-3394      TCGA-43-5668      TCGA-43-6143 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-43-6770      TCGA-43-6771      TCGA-46-6025      TCGA-46-6026 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-56-5897      TCGA-56-5898      TCGA-56-6545      TCGA-56-6546 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2708      TCGA-60-2709      TCGA-60-2710 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-60-2711      TCGA-60-2712      TCGA-60-2713      TCGA-60-2719 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-60-2720      TCGA-60-2721      TCGA-60-2724      TCGA-60-2726 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-63-5128      TCGA-63-5131      TCGA-63-6202      TCGA-66-2727 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2758      TCGA-66-2766      TCGA-66-2767      TCGA-66-2768 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2770      TCGA-66-2773      TCGA-66-2777      TCGA-66-2778 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2781      TCGA-66-2782      TCGA-66-2783      TCGA-66-2785 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2788      TCGA-66-2791      TCGA-66-2794      TCGA-66-2795 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2800      TCGA-70-6722      TCGA-70-6723      TCGA-85-6175 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-85-6560      TCGA-85-6561 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
D96V7, multiclass
        clus
vv       BAGE2 MUTATED BAGE2 WILD-TYPE
  CLUS_1             0              35
  CLUS_2             2              60
  CLUS_3             0              53
  CLUS_4             1              27
D96V8, multiclass
        clus
vv       BAGE2 MUTATED BAGE2 WILD-TYPE
  CLUS_1             2              62
  CLUS_2             0              30
  CLUS_3             1              83
D96V9, multiclass
        clus
vv       BAGE2 MUTATED BAGE2 WILD-TYPE
  CLUS_1             2             103
  CLUS_2             0              27
  CLUS_3             1              29
D96V10, multiclass
        clus
vv       BAGE2 MUTATED BAGE2 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             1              88
  CLUS_3             0              34

Clustering(97) Variable = CD5L MUTATION ANALYSIS
D97V1, multiclass
        clus
vv       CD5L MUTATED CD5L WILD-TYPE
  CLUS_1            3             35
  CLUS_2            0             46
  CLUS_3            0             15
  CLUS_4            0             22
D97V2, multiclass
        clus
vv       CD5L MUTATED CD5L WILD-TYPE
  CLUS_1            0             11
  CLUS_2            0             50
  CLUS_3            3             57
D97V3, multiclass
        clus
vv       CD5L MUTATED CD5L WILD-TYPE
  CLUS_1            4             52
  CLUS_2            3             64
  CLUS_3            1             54
D97V4, multiclass
        clus
vv       CD5L MUTATED CD5L WILD-TYPE
  CLUS_1            2             25
  CLUS_2            1             29
  CLUS_3            2             15
D97V5, multiclass
        clus
vv       CD5L MUTATED CD5L WILD-TYPE
  CLUS_1            1             33
  CLUS_2            5             42
  CLUS_3            0             31
D97V6, multiclass
        clus
vv       CD5L MUTATED CD5L WILD-TYPE
  CLUS_1            1             30
  CLUS_2            0             27
  CLUS_3            2             31
  CLUS_4            3             18
D97V7, multiclass
        clus
vv       CD5L MUTATED CD5L WILD-TYPE
  CLUS_1            2             33
  CLUS_2            1             61
  CLUS_3            3             50
  CLUS_4            2             26
D97V8, multiclass
        clus
vv       CD5L MUTATED CD5L WILD-TYPE
  CLUS_1            1             63
  CLUS_2            1             29
  CLUS_3            6             78
D97V9, multiclass
        clus
vv       CD5L MUTATED CD5L WILD-TYPE
  CLUS_1            3            102
  CLUS_2            3             24
  CLUS_3            2             28
D97V10, multiclass
        clus
vv       CD5L MUTATED CD5L WILD-TYPE
  CLUS_1            2             37
  CLUS_2            5             84
  CLUS_3            1             33

Clustering(98) Variable = LIN37 MUTATION ANALYSIS
D98V1, multiclass
[1] "Remove cluster labels:" "LIN37 MUTATED"         
clus
  LIN37 MUTATED LIN37 WILD-TYPE 
              1             120 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-21-1070 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-21-1071      TCGA-21-1076      TCGA-21-1077      TCGA-21-1078 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-21-1081      TCGA-22-0944      TCGA-22-1002      TCGA-22-1011 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-1012      TCGA-22-1016      TCGA-22-4591      TCGA-22-4595 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-4613      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-34-2596 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-34-2600      TCGA-34-2608      TCGA-34-5240      TCGA-34-5241 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-37-3783      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5016      TCGA-39-5021      TCGA-39-5029      TCGA-39-5030 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5035      TCGA-39-5036      TCGA-39-5037      TCGA-43-2578 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-46-3765      TCGA-46-3766 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-46-3767      TCGA-46-3768      TCGA-46-3769      TCGA-51-4079 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-51-4080      TCGA-51-4081      TCGA-56-1622      TCGA-60-2698 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2707      TCGA-60-2708      TCGA-60-2710      TCGA-60-2711 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2713      TCGA-60-2715      TCGA-60-2719 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2720      TCGA-60-2721      TCGA-60-2722      TCGA-60-2723 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2724      TCGA-60-2725      TCGA-60-2726      TCGA-63-5128 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-63-5131      TCGA-66-2727      TCGA-66-2734      TCGA-66-2742 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2744      TCGA-66-2754      TCGA-66-2755      TCGA-66-2756 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2757      TCGA-66-2758      TCGA-66-2759      TCGA-66-2763 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2765      TCGA-66-2766      TCGA-66-2767      TCGA-66-2768 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2770      TCGA-66-2771      TCGA-66-2773      TCGA-66-2777 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2778      TCGA-66-2780      TCGA-66-2781      TCGA-66-2782 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2783      TCGA-66-2785      TCGA-66-2786      TCGA-66-2787 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2788      TCGA-66-2789      TCGA-66-2791      TCGA-66-2792 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2793      TCGA-66-2794      TCGA-66-2795      TCGA-66-2800 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
D98V2, multiclass
[1] "Remove cluster labels:" "LIN37 MUTATED"         
clus
  LIN37 MUTATED LIN37 WILD-TYPE 
              1             120 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-21-1070 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-21-1071      TCGA-21-1076      TCGA-21-1077      TCGA-21-1078 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-21-1081      TCGA-22-0944      TCGA-22-1002      TCGA-22-1011 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-1012      TCGA-22-1016      TCGA-22-4591      TCGA-22-4595 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-4613      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-34-2596 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-34-2600      TCGA-34-2608      TCGA-34-5240      TCGA-34-5241 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-37-3783      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5016      TCGA-39-5021      TCGA-39-5029      TCGA-39-5030 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5035      TCGA-39-5036      TCGA-39-5037      TCGA-43-2578 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-46-3765      TCGA-46-3766 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-46-3767      TCGA-46-3768      TCGA-46-3769      TCGA-51-4079 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-51-4080      TCGA-51-4081      TCGA-56-1622      TCGA-60-2698 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2707      TCGA-60-2708      TCGA-60-2710      TCGA-60-2711 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2713      TCGA-60-2715      TCGA-60-2719 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2720      TCGA-60-2721      TCGA-60-2722      TCGA-60-2723 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2724      TCGA-60-2725      TCGA-60-2726      TCGA-63-5128 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-63-5131      TCGA-66-2727      TCGA-66-2734      TCGA-66-2742 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2744      TCGA-66-2754      TCGA-66-2755      TCGA-66-2756 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2757      TCGA-66-2758      TCGA-66-2759      TCGA-66-2763 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2765      TCGA-66-2766      TCGA-66-2767      TCGA-66-2768 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2770      TCGA-66-2771      TCGA-66-2773      TCGA-66-2777 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2778      TCGA-66-2780      TCGA-66-2781      TCGA-66-2782 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2783      TCGA-66-2785      TCGA-66-2786      TCGA-66-2787 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2788      TCGA-66-2789      TCGA-66-2791      TCGA-66-2792 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2793      TCGA-66-2794      TCGA-66-2795      TCGA-66-2800 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
D98V3, multiclass
        clus
vv       LIN37 MUTATED LIN37 WILD-TYPE
  CLUS_1             1              55
  CLUS_2             1              66
  CLUS_3             1              54
D98V4, multiclass
[1] "Remove cluster labels:" "LIN37 MUTATED"         
clus
  LIN37 MUTATED LIN37 WILD-TYPE 
              2              72 
     TCGA-18-3417      TCGA-18-4721      TCGA-18-5595      TCGA-21-5782 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-21-5784      TCGA-21-5786      TCGA-21-5787      TCGA-22-4593 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4613      TCGA-22-5471 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5472      TCGA-22-5473      TCGA-22-5474      TCGA-22-5477 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5478      TCGA-22-5480      TCGA-22-5482      TCGA-22-5485 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-33-4566 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-33-4582      TCGA-33-4583      TCGA-33-4586      TCGA-33-6737 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-34-5231      TCGA-34-5232      TCGA-34-5234      TCGA-34-5236 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-34-5239      TCGA-34-5240      TCGA-34-5241      TCGA-34-5927 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-34-5928      TCGA-34-5929      TCGA-37-5819      TCGA-39-5016 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5019      TCGA-39-5021      TCGA-39-5022      TCGA-39-5024 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5027      TCGA-39-5028      TCGA-39-5029      TCGA-39-5030 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5031      TCGA-39-5035      TCGA-39-5036      TCGA-39-5037 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5039      TCGA-43-5668      TCGA-43-6143      TCGA-43-6770 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-43-6771      TCGA-46-6025      TCGA-46-6026      TCGA-56-5897 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-56-5898      TCGA-56-6545      TCGA-56-6546      TCGA-60-2709 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-63-5128      TCGA-63-5131      TCGA-63-6202      TCGA-70-6722 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-70-6723      TCGA-85-6175      TCGA-85-6560      TCGA-85-6561 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
D98V5, multiclass
[1] "Remove cluster labels:" "LIN37 MUTATED"         
clus
  LIN37 MUTATED LIN37 WILD-TYPE 
              2             110 
     TCGA-18-4721      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1078      TCGA-21-1081      TCGA-21-5782 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-21-5784      TCGA-21-5786      TCGA-21-5787      TCGA-22-1011 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-4591      TCGA-22-4607      TCGA-22-5471      TCGA-22-5472 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5473      TCGA-22-5474      TCGA-22-5477      TCGA-22-5478 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5480      TCGA-22-5482      TCGA-22-5485      TCGA-22-5489 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5491      TCGA-22-5492      TCGA-33-4532      TCGA-33-4547 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-33-4566      TCGA-33-4582      TCGA-33-4586      TCGA-33-6737 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-34-2596      TCGA-34-2608      TCGA-34-5231      TCGA-34-5232 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-34-5234      TCGA-34-5236      TCGA-34-5239      TCGA-34-5241 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-4133 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-37-4135      TCGA-37-4141      TCGA-37-5819      TCGA-39-5016 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5019      TCGA-39-5021      TCGA-39-5022      TCGA-39-5024 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5027      TCGA-39-5028      TCGA-39-5029      TCGA-39-5030 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5031      TCGA-39-5035      TCGA-39-5037      TCGA-43-2578 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-5668      TCGA-43-6143      TCGA-43-6770 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-43-6771      TCGA-46-6025      TCGA-46-6026      TCGA-56-5897 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-56-5898      TCGA-56-6545      TCGA-56-6546      TCGA-60-2698 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2708      TCGA-60-2709      TCGA-60-2710      TCGA-60-2711 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2713      TCGA-60-2719      TCGA-60-2720 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2724      TCGA-60-2725      TCGA-60-2726 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-63-5128      TCGA-63-5131      TCGA-63-6202      TCGA-66-2727 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2758      TCGA-66-2766      TCGA-66-2767      TCGA-66-2768 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2770      TCGA-66-2773      TCGA-66-2777      TCGA-66-2778 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2781      TCGA-66-2782      TCGA-66-2783      TCGA-66-2785 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2788      TCGA-66-2791      TCGA-66-2794      TCGA-66-2795 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2800      TCGA-70-6722      TCGA-70-6723      TCGA-85-6175 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-85-6560      TCGA-85-6561 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
D98V6, multiclass
[1] "Remove cluster labels:" "LIN37 MUTATED"         
clus
  LIN37 MUTATED LIN37 WILD-TYPE 
              2             110 
     TCGA-18-4721      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1078      TCGA-21-1081      TCGA-21-5782 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-21-5784      TCGA-21-5786      TCGA-21-5787      TCGA-22-1011 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-4591      TCGA-22-4607      TCGA-22-5471      TCGA-22-5472 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5473      TCGA-22-5474      TCGA-22-5477      TCGA-22-5478 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5480      TCGA-22-5482      TCGA-22-5485      TCGA-22-5489 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5491      TCGA-22-5492      TCGA-33-4532      TCGA-33-4547 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-33-4566      TCGA-33-4582      TCGA-33-4586      TCGA-33-6737 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-34-2596      TCGA-34-2608      TCGA-34-5231      TCGA-34-5232 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-34-5234      TCGA-34-5236      TCGA-34-5239      TCGA-34-5241 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-4133 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-37-4135      TCGA-37-4141      TCGA-37-5819      TCGA-39-5016 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5019      TCGA-39-5021      TCGA-39-5022      TCGA-39-5024 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5027      TCGA-39-5028      TCGA-39-5029      TCGA-39-5030 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5031      TCGA-39-5035      TCGA-39-5037      TCGA-43-2578 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-5668      TCGA-43-6143      TCGA-43-6770 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-43-6771      TCGA-46-6025      TCGA-46-6026      TCGA-56-5897 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-56-5898      TCGA-56-6545      TCGA-56-6546      TCGA-60-2698 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2708      TCGA-60-2709      TCGA-60-2710      TCGA-60-2711 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2713      TCGA-60-2719      TCGA-60-2720 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2724      TCGA-60-2725      TCGA-60-2726 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-63-5128      TCGA-63-5131      TCGA-63-6202      TCGA-66-2727 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2758      TCGA-66-2766      TCGA-66-2767      TCGA-66-2768 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2770      TCGA-66-2773      TCGA-66-2777      TCGA-66-2778 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2781      TCGA-66-2782      TCGA-66-2783      TCGA-66-2785 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2788      TCGA-66-2791      TCGA-66-2794      TCGA-66-2795 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2800      TCGA-70-6722      TCGA-70-6723      TCGA-85-6175 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-85-6560      TCGA-85-6561 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
D98V7, multiclass
        clus
vv       LIN37 MUTATED LIN37 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             1              61
  CLUS_3             1              52
  CLUS_4             0              28
D98V8, multiclass
        clus
vv       LIN37 MUTATED LIN37 WILD-TYPE
  CLUS_1             1              63
  CLUS_2             0              30
  CLUS_3             2              82
D98V9, multiclass
        clus
vv       LIN37 MUTATED LIN37 WILD-TYPE
  CLUS_1             2             103
  CLUS_2             1              26
  CLUS_3             0              30
D98V10, multiclass
        clus
vv       LIN37 MUTATED LIN37 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             3              86
  CLUS_3             0              34

Clustering(99) Variable = OR4C11 MUTATION ANALYSIS
D99V1, multiclass
        clus
vv       OR4C11 MUTATED OR4C11 WILD-TYPE
  CLUS_1              2               36
  CLUS_2              4               42
  CLUS_3              0               15
  CLUS_4              0               22
D99V2, multiclass
        clus
vv       OR4C11 MUTATED OR4C11 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              4               46
  CLUS_3              2               58
D99V3, multiclass
        clus
vv       OR4C11 MUTATED OR4C11 WILD-TYPE
  CLUS_1              0               56
  CLUS_2              6               61
  CLUS_3              1               54
D99V4, multiclass
        clus
vv       OR4C11 MUTATED OR4C11 WILD-TYPE
  CLUS_1              0               27
  CLUS_2              4               26
  CLUS_3              0               17
D99V5, multiclass
        clus
vv       OR4C11 MUTATED OR4C11 WILD-TYPE
  CLUS_1              1               33
  CLUS_2              2               45
  CLUS_3              2               29
D99V6, multiclass
        clus
vv       OR4C11 MUTATED OR4C11 WILD-TYPE
  CLUS_1              1               30
  CLUS_2              1               26
  CLUS_3              2               31
  CLUS_4              1               20
D99V7, multiclass
        clus
vv       OR4C11 MUTATED OR4C11 WILD-TYPE
  CLUS_1              2               33
  CLUS_2              4               58
  CLUS_3              0               53
  CLUS_4              1               27
D99V8, multiclass
        clus
vv       OR4C11 MUTATED OR4C11 WILD-TYPE
  CLUS_1              4               60
  CLUS_2              0               30
  CLUS_3              3               81
D99V9, multiclass
        clus
vv       OR4C11 MUTATED OR4C11 WILD-TYPE
  CLUS_1              4              101
  CLUS_2              0               27
  CLUS_3              0               30
D99V10, multiclass
        clus
vv       OR4C11 MUTATED OR4C11 WILD-TYPE
  CLUS_1              2               37
  CLUS_2              2               87
  CLUS_3              0               34

Clustering(100) Variable = OR8K5 MUTATION ANALYSIS
D100V1, multiclass
        clus
vv       OR8K5 MUTATED OR8K5 WILD-TYPE
  CLUS_1             2              36
  CLUS_2             1              45
  CLUS_3             0              15
  CLUS_4             1              21
D100V2, multiclass
        clus
vv       OR8K5 MUTATED OR8K5 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             1              49
  CLUS_3             3              57
D100V3, multiclass
        clus
vv       OR8K5 MUTATED OR8K5 WILD-TYPE
  CLUS_1             2              54
  CLUS_2             3              64
  CLUS_3             1              54
D100V4, multiclass
        clus
vv       OR8K5 MUTATED OR8K5 WILD-TYPE
  CLUS_1             1              26
  CLUS_2             1              29
  CLUS_3             1              16
D100V5, multiclass
[1] "Remove cluster labels:" "OR8K5 MUTATED"         
clus
  OR8K5 MUTATED OR8K5 WILD-TYPE 
              1             111 
     TCGA-18-4721      TCGA-18-5592      TCGA-18-5595      TCGA-21-1070 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-21-1071      TCGA-21-1076      TCGA-21-1078      TCGA-21-1081 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-1011      TCGA-22-4591      TCGA-22-4607      TCGA-22-5471 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-5472      TCGA-22-5473      TCGA-22-5474      TCGA-22-5477 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-5478      TCGA-22-5480      TCGA-22-5482      TCGA-22-5485 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-33-4532 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4586 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-33-6737      TCGA-34-2596      TCGA-34-2608      TCGA-34-5231 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-34-5232      TCGA-34-5234      TCGA-34-5236      TCGA-34-5239 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-34-5241      TCGA-34-5928      TCGA-34-5929      TCGA-37-3789 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-4141      TCGA-37-5819 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-39-5016      TCGA-39-5019      TCGA-39-5021      TCGA-39-5022 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-39-5024      TCGA-39-5027      TCGA-39-5028      TCGA-39-5029 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-39-5030      TCGA-39-5031      TCGA-39-5035      TCGA-39-5037 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-43-2578      TCGA-43-3394      TCGA-43-5668      TCGA-43-6143 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-43-6770      TCGA-43-6771      TCGA-46-6025      TCGA-46-6026 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-56-5897      TCGA-56-5898      TCGA-56-6545      TCGA-56-6546 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2708      TCGA-60-2709      TCGA-60-2710 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-60-2711      TCGA-60-2712      TCGA-60-2713      TCGA-60-2719 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-60-2720      TCGA-60-2721      TCGA-60-2724      TCGA-60-2725 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-60-2726      TCGA-63-5128      TCGA-63-5131      TCGA-63-6202 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2727      TCGA-66-2758      TCGA-66-2766      TCGA-66-2767 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2773      TCGA-66-2777 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2778      TCGA-66-2781      TCGA-66-2782      TCGA-66-2783 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2785      TCGA-66-2788      TCGA-66-2791      TCGA-66-2794 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2795      TCGA-66-2800      TCGA-70-6722      TCGA-70-6723 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-85-6175      TCGA-85-6560      TCGA-85-6561 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
D100V6, multiclass
[1] "Remove cluster labels:" "OR8K5 MUTATED"         
clus
  OR8K5 MUTATED OR8K5 WILD-TYPE 
              1             111 
     TCGA-18-4721      TCGA-18-5592      TCGA-18-5595      TCGA-21-1070 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-21-1071      TCGA-21-1076      TCGA-21-1078      TCGA-21-1081 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-1011      TCGA-22-4591      TCGA-22-4607      TCGA-22-5471 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-5472      TCGA-22-5473      TCGA-22-5474      TCGA-22-5477 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-5478      TCGA-22-5480      TCGA-22-5482      TCGA-22-5485 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-33-4532 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4586 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-33-6737      TCGA-34-2596      TCGA-34-2608      TCGA-34-5231 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-34-5232      TCGA-34-5234      TCGA-34-5236      TCGA-34-5239 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-34-5241      TCGA-34-5928      TCGA-34-5929      TCGA-37-3789 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-4141      TCGA-37-5819 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-39-5016      TCGA-39-5019      TCGA-39-5021      TCGA-39-5022 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-39-5024      TCGA-39-5027      TCGA-39-5028      TCGA-39-5029 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-39-5030      TCGA-39-5031      TCGA-39-5035      TCGA-39-5037 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-43-2578      TCGA-43-3394      TCGA-43-5668      TCGA-43-6143 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-43-6770      TCGA-43-6771      TCGA-46-6025      TCGA-46-6026 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-56-5897      TCGA-56-5898      TCGA-56-6545      TCGA-56-6546 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2708      TCGA-60-2709      TCGA-60-2710 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-60-2711      TCGA-60-2712      TCGA-60-2713      TCGA-60-2719 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-60-2720      TCGA-60-2721      TCGA-60-2724      TCGA-60-2725 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-60-2726      TCGA-63-5128      TCGA-63-5131      TCGA-63-6202 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2727      TCGA-66-2758      TCGA-66-2766      TCGA-66-2767 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2773      TCGA-66-2777 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2778      TCGA-66-2781      TCGA-66-2782      TCGA-66-2783 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2785      TCGA-66-2788      TCGA-66-2791      TCGA-66-2794 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2795      TCGA-66-2800      TCGA-70-6722      TCGA-70-6723 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-85-6175      TCGA-85-6560      TCGA-85-6561 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
D100V7, multiclass
        clus
vv       OR8K5 MUTATED OR8K5 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             2              60
  CLUS_3             2              51
  CLUS_4             1              27
D100V8, multiclass
        clus
vv       OR8K5 MUTATED OR8K5 WILD-TYPE
  CLUS_1             2              62
  CLUS_2             2              28
  CLUS_3             2              82
D100V9, multiclass
        clus
vv       OR8K5 MUTATED OR8K5 WILD-TYPE
  CLUS_1             3             102
  CLUS_2             2              25
  CLUS_3             1              29
D100V10, multiclass
        clus
vv       OR8K5 MUTATED OR8K5 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             3              86
  CLUS_3             2              32

Clustering(101) Variable = GABRG3 MUTATION ANALYSIS
D101V1, multiclass
        clus
vv       GABRG3 MUTATED GABRG3 WILD-TYPE
  CLUS_1              2               36
  CLUS_2              2               44
  CLUS_3              0               15
  CLUS_4              1               21
D101V2, multiclass
        clus
vv       GABRG3 MUTATED GABRG3 WILD-TYPE
  CLUS_1              1               10
  CLUS_2              2               48
  CLUS_3              2               58
D101V3, multiclass
        clus
vv       GABRG3 MUTATED GABRG3 WILD-TYPE
  CLUS_1              6               50
  CLUS_2              2               65
  CLUS_3              2               53
D101V4, multiclass
        clus
vv       GABRG3 MUTATED GABRG3 WILD-TYPE
  CLUS_1              4               23
  CLUS_2              3               27
  CLUS_3              0               17
D101V5, multiclass
        clus
vv       GABRG3 MUTATED GABRG3 WILD-TYPE
  CLUS_1              2               32
  CLUS_2              3               44
  CLUS_3              2               29
D101V6, multiclass
        clus
vv       GABRG3 MUTATED GABRG3 WILD-TYPE
  CLUS_1              3               28
  CLUS_2              0               27
  CLUS_3              2               31
  CLUS_4              2               19
D101V7, multiclass
        clus
vv       GABRG3 MUTATED GABRG3 WILD-TYPE
  CLUS_1              2               33
  CLUS_2              4               58
  CLUS_3              1               52
  CLUS_4              3               25
D101V8, multiclass
        clus
vv       GABRG3 MUTATED GABRG3 WILD-TYPE
  CLUS_1              4               60
  CLUS_2              1               29
  CLUS_3              5               79
D101V9, multiclass
        clus
vv       GABRG3 MUTATED GABRG3 WILD-TYPE
  CLUS_1              3              102
  CLUS_2              4               23
  CLUS_3              2               28
D101V10, multiclass
        clus
vv       GABRG3 MUTATED GABRG3 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              6               83
  CLUS_3              2               32

Clustering(102) Variable = KRTAP10-7 MUTATION ANALYSIS
D102V1, multiclass
        clus
vv       KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE
  CLUS_1                 0                  38
  CLUS_2                 1                  45
  CLUS_3                 3                  12
  CLUS_4                 1                  21
D102V2, multiclass
        clus
vv       KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE
  CLUS_1                 1                  10
  CLUS_2                 2                  48
  CLUS_3                 2                  58
D102V3, multiclass
        clus
vv       KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE
  CLUS_1                 3                  53
  CLUS_2                 3                  64
  CLUS_3                 1                  54
D102V4, multiclass
[1] "Remove cluster labels:" "KRTAP10-7 MUTATED"     
clus
  KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE 
                  2                  72 
         TCGA-18-3417          TCGA-18-4721          TCGA-18-5592 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-18-5595          TCGA-21-5782          TCGA-21-5784 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-21-5786          TCGA-21-5787          TCGA-22-4593 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-4599          TCGA-22-4601          TCGA-22-4613 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5471          TCGA-22-5472          TCGA-22-5473 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5474          TCGA-22-5477          TCGA-22-5478 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5480          TCGA-22-5482          TCGA-22-5485 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5489          TCGA-22-5491          TCGA-22-5492 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-33-4566          TCGA-33-4582          TCGA-33-4583 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-33-4586          TCGA-33-6737          TCGA-34-5231 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-34-5234          TCGA-34-5236          TCGA-34-5239 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-34-5240          TCGA-34-5241          TCGA-34-5927 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-34-5928          TCGA-34-5929          TCGA-37-5819 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5016          TCGA-39-5019          TCGA-39-5021 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5022          TCGA-39-5024          TCGA-39-5027 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5029          TCGA-39-5030          TCGA-39-5031 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5035          TCGA-39-5036          TCGA-39-5037 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5039          TCGA-43-5668          TCGA-43-6143 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-43-6647          TCGA-43-6770          TCGA-43-6771 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-46-6025          TCGA-46-6026          TCGA-56-5897 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-56-5898          TCGA-56-6545          TCGA-56-6546 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2709          TCGA-63-5128          TCGA-63-5131 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-63-6202          TCGA-70-6722          TCGA-70-6723 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-85-6175          TCGA-85-6560          TCGA-85-6561 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
D102V5, multiclass
        clus
vv       KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE
  CLUS_1                 2                  32
  CLUS_2                 2                  45
  CLUS_3                 0                  31
D102V6, multiclass
        clus
vv       KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE
  CLUS_1                 1                  30
  CLUS_2                 1                  26
  CLUS_3                 1                  32
  CLUS_4                 1                  20
D102V7, multiclass
        clus
vv       KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE
  CLUS_1                 3                  32
  CLUS_2                 2                  60
  CLUS_3                 2                  51
  CLUS_4                 0                  28
D102V8, multiclass
        clus
vv       KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE
  CLUS_1                 3                  61
  CLUS_2                 0                  30
  CLUS_3                 4                  80
D102V9, multiclass
        clus
vv       KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE
  CLUS_1                 4                 101
  CLUS_2                 1                  26
  CLUS_3                 1                  29
D102V10, multiclass
        clus
vv       KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE
  CLUS_1                 1                  38
  CLUS_2                 4                  85
  CLUS_3                 1                  33

Clustering(103) Variable = UGT3A2 MUTATION ANALYSIS
D103V1, multiclass
        clus
vv       UGT3A2 MUTATED UGT3A2 WILD-TYPE
  CLUS_1              4               34
  CLUS_2              3               43
  CLUS_3              1               14
  CLUS_4              1               21
D103V2, multiclass
        clus
vv       UGT3A2 MUTATED UGT3A2 WILD-TYPE
  CLUS_1              1               10
  CLUS_2              3               47
  CLUS_3              5               55
D103V3, multiclass
        clus
vv       UGT3A2 MUTATED UGT3A2 WILD-TYPE
  CLUS_1              1               55
  CLUS_2              5               62
  CLUS_3              4               51
D103V4, multiclass
        clus
vv       UGT3A2 MUTATED UGT3A2 WILD-TYPE
  CLUS_1              1               26
  CLUS_2              2               28
  CLUS_3              1               16
D103V5, multiclass
        clus
vv       UGT3A2 MUTATED UGT3A2 WILD-TYPE
  CLUS_1              1               33
  CLUS_2              2               45
  CLUS_3              1               30
D103V6, multiclass
        clus
vv       UGT3A2 MUTATED UGT3A2 WILD-TYPE
  CLUS_1              1               30
  CLUS_2              0               27
  CLUS_3              2               31
  CLUS_4              1               20
D103V7, multiclass
        clus
vv       UGT3A2 MUTATED UGT3A2 WILD-TYPE
  CLUS_1              2               33
  CLUS_2              4               58
  CLUS_3              3               50
  CLUS_4              1               27
D103V8, multiclass
        clus
vv       UGT3A2 MUTATED UGT3A2 WILD-TYPE
  CLUS_1              4               60
  CLUS_2              0               30
  CLUS_3              6               78
D103V9, multiclass
        clus
vv       UGT3A2 MUTATED UGT3A2 WILD-TYPE
  CLUS_1              8               97
  CLUS_2              0               27
  CLUS_3              1               29
D103V10, multiclass
        clus
vv       UGT3A2 MUTATED UGT3A2 WILD-TYPE
  CLUS_1              3               36
  CLUS_2              5               84
  CLUS_3              1               33

Clustering(104) Variable = PRB2 MUTATION ANALYSIS
D104V1, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            2             36
  CLUS_2            2             44
  CLUS_3            0             15
  CLUS_4            1             21
D104V2, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            1             10
  CLUS_2            2             48
  CLUS_3            2             58
D104V3, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            3             53
  CLUS_2            1             66
  CLUS_3            3             52
D104V4, multiclass
[1] "Remove cluster labels:" "PRB2 MUTATED"          
clus
  PRB2 MUTATED PRB2 WILD-TYPE 
             2             72 
    TCGA-18-3417     TCGA-18-5592     TCGA-18-5595     TCGA-21-5782 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-21-5784     TCGA-21-5786     TCGA-21-5787     TCGA-22-4593 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4613     TCGA-22-5471 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-5472     TCGA-22-5473     TCGA-22-5474     TCGA-22-5477 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-5478     TCGA-22-5480     TCGA-22-5482     TCGA-22-5485 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-5489     TCGA-22-5491     TCGA-22-5492     TCGA-33-4566 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-33-4582     TCGA-33-4583     TCGA-33-4586     TCGA-33-6737 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-34-5231     TCGA-34-5232     TCGA-34-5234     TCGA-34-5236 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-34-5239     TCGA-34-5240     TCGA-34-5241     TCGA-34-5927 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-34-5928     TCGA-34-5929     TCGA-37-5819     TCGA-39-5016 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-39-5019     TCGA-39-5021     TCGA-39-5024     TCGA-39-5027 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-39-5028     TCGA-39-5029     TCGA-39-5030     TCGA-39-5031 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-39-5035     TCGA-39-5036     TCGA-39-5037     TCGA-39-5039 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-43-5668     TCGA-43-6143     TCGA-43-6647     TCGA-43-6770 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-43-6771     TCGA-46-6025     TCGA-46-6026     TCGA-56-5897 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-56-5898     TCGA-56-6545     TCGA-56-6546     TCGA-60-2709 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-63-5128     TCGA-63-5131     TCGA-63-6202     TCGA-70-6722 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-70-6723     TCGA-85-6175     TCGA-85-6560     TCGA-85-6561 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
D104V5, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            4             30
  CLUS_2            1             46
  CLUS_3            0             31
D104V6, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            3             28
  CLUS_2            1             26
  CLUS_3            1             32
  CLUS_4            0             21
D104V7, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            1             34
  CLUS_2            4             58
  CLUS_3            2             51
  CLUS_4            0             28
D104V8, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            3             61
  CLUS_2            1             29
  CLUS_3            3             81
D104V9, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            4            101
  CLUS_2            0             27
  CLUS_3            3             27
D104V10, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            3             86
  CLUS_3            3             31

Clustering(105) Variable = HDAC9 MUTATION ANALYSIS
D105V1, multiclass
        clus
vv       HDAC9 MUTATED HDAC9 WILD-TYPE
  CLUS_1             3              35
  CLUS_2             4              42
  CLUS_3             1              14
  CLUS_4             2              20
D105V2, multiclass
        clus
vv       HDAC9 MUTATED HDAC9 WILD-TYPE
  CLUS_1             2               9
  CLUS_2             5              45
  CLUS_3             3              57
D105V3, multiclass
        clus
vv       HDAC9 MUTATED HDAC9 WILD-TYPE
  CLUS_1             5              51
  CLUS_2             6              61
  CLUS_3             3              52
D105V4, multiclass
        clus
vv       HDAC9 MUTATED HDAC9 WILD-TYPE
  CLUS_1             2              25
  CLUS_2             2              28
  CLUS_3             2              15
D105V5, multiclass
        clus
vv       HDAC9 MUTATED HDAC9 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             4              43
  CLUS_3             4              27
D105V6, multiclass
        clus
vv       HDAC9 MUTATED HDAC9 WILD-TYPE
  CLUS_1             1              30
  CLUS_2             1              26
  CLUS_3             3              30
  CLUS_4             4              17
D105V7, multiclass
        clus
vv       HDAC9 MUTATED HDAC9 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             5              57
  CLUS_3             3              50
  CLUS_4             4              24
D105V8, multiclass
        clus
vv       HDAC9 MUTATED HDAC9 WILD-TYPE
  CLUS_1             6              58
  CLUS_2             3              27
  CLUS_3             5              79
D105V9, multiclass
        clus
vv       HDAC9 MUTATED HDAC9 WILD-TYPE
  CLUS_1             5             100
  CLUS_2             3              24
  CLUS_3             4              26
D105V10, multiclass
        clus
vv       HDAC9 MUTATED HDAC9 WILD-TYPE
  CLUS_1             3              36
  CLUS_2             6              83
  CLUS_3             3              31

Clustering(106) Variable = HAO1 MUTATION ANALYSIS
D106V1, multiclass
        clus
vv       HAO1 MUTATED HAO1 WILD-TYPE
  CLUS_1            3             35
  CLUS_2            1             45
  CLUS_3            1             14
  CLUS_4            2             20
D106V2, multiclass
        clus
vv       HAO1 MUTATED HAO1 WILD-TYPE
  CLUS_1            1             10
  CLUS_2            2             48
  CLUS_3            4             56
D106V3, multiclass
        clus
vv       HAO1 MUTATED HAO1 WILD-TYPE
  CLUS_1            2             54
  CLUS_2            3             64
  CLUS_3            2             53
D106V4, multiclass
[1] "Remove cluster labels:" "HAO1 MUTATED"          
clus
  HAO1 MUTATED HAO1 WILD-TYPE 
             1             73 
    TCGA-18-3417     TCGA-18-4721     TCGA-18-5592     TCGA-18-5595 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-4593     TCGA-22-4601     TCGA-22-4613     TCGA-22-5471 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-5472     TCGA-22-5473     TCGA-22-5474     TCGA-22-5477 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-5478     TCGA-22-5480     TCGA-22-5482     TCGA-22-5485 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-5489     TCGA-22-5491     TCGA-22-5492     TCGA-33-4566 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-33-4582     TCGA-33-4583     TCGA-33-4586     TCGA-33-6737 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-34-5231     TCGA-34-5232     TCGA-34-5234     TCGA-34-5236 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-34-5239     TCGA-34-5240     TCGA-34-5241     TCGA-34-5927 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-34-5928     TCGA-34-5929     TCGA-37-5819     TCGA-39-5016 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-39-5019     TCGA-39-5021     TCGA-39-5022     TCGA-39-5024 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-39-5027     TCGA-39-5028     TCGA-39-5029     TCGA-39-5030 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-39-5031     TCGA-39-5035     TCGA-39-5036     TCGA-39-5037 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-39-5039     TCGA-43-5668     TCGA-43-6143     TCGA-43-6647 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-43-6770     TCGA-43-6771     TCGA-46-6025     TCGA-46-6026 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-56-5897     TCGA-56-5898     TCGA-56-6545     TCGA-56-6546 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-60-2709     TCGA-63-5128     TCGA-63-5131     TCGA-63-6202 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-70-6722     TCGA-70-6723     TCGA-85-6175     TCGA-85-6560 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-85-6561 
"HAO1 WILD-TYPE" 
D106V5, multiclass
        clus
vv       HAO1 MUTATED HAO1 WILD-TYPE
  CLUS_1            1             33
  CLUS_2            1             46
  CLUS_3            1             30
D106V6, multiclass
        clus
vv       HAO1 MUTATED HAO1 WILD-TYPE
  CLUS_1            1             30
  CLUS_2            1             26
  CLUS_3            1             32
  CLUS_4            0             21
D106V7, multiclass
        clus
vv       HAO1 MUTATED HAO1 WILD-TYPE
  CLUS_1            2             33
  CLUS_2            1             61
  CLUS_3            4             49
  CLUS_4            0             28
D106V8, multiclass
        clus
vv       HAO1 MUTATED HAO1 WILD-TYPE
  CLUS_1            2             62
  CLUS_2            2             28
  CLUS_3            3             81
D106V9, multiclass
        clus
vv       HAO1 MUTATED HAO1 WILD-TYPE
  CLUS_1            4            101
  CLUS_2            1             26
  CLUS_3            0             30
D106V10, multiclass
        clus
vv       HAO1 MUTATED HAO1 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            4             85
  CLUS_3            0             34

Clustering(107) Variable = OR2T12 MUTATION ANALYSIS
D107V1, multiclass
        clus
vv       OR2T12 MUTATED OR2T12 WILD-TYPE
  CLUS_1              0               38
  CLUS_2              2               44
  CLUS_3              1               14
  CLUS_4              1               21
D107V2, multiclass
        clus
vv       OR2T12 MUTATED OR2T12 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              3               47
  CLUS_3              1               59
D107V3, multiclass
        clus
vv       OR2T12 MUTATED OR2T12 WILD-TYPE
  CLUS_1              1               55
  CLUS_2              6               61
  CLUS_3              1               54
D107V4, multiclass
        clus
vv       OR2T12 MUTATED OR2T12 WILD-TYPE
  CLUS_1              1               26
  CLUS_2              3               27
  CLUS_3              0               17
D107V5, multiclass
        clus
vv       OR2T12 MUTATED OR2T12 WILD-TYPE
  CLUS_1              0               34
  CLUS_2              4               43
  CLUS_3              2               29
D107V6, multiclass
        clus
vv       OR2T12 MUTATED OR2T12 WILD-TYPE
  CLUS_1              1               30
  CLUS_2              2               25
  CLUS_3              2               31
  CLUS_4              1               20
D107V7, multiclass
        clus
vv       OR2T12 MUTATED OR2T12 WILD-TYPE
  CLUS_1              1               34
  CLUS_2              3               59
  CLUS_3              3               50
  CLUS_4              1               27
D107V8, multiclass
        clus
vv       OR2T12 MUTATED OR2T12 WILD-TYPE
  CLUS_1              4               60
  CLUS_2              1               29
  CLUS_3              3               81
D107V9, multiclass
        clus
vv       OR2T12 MUTATED OR2T12 WILD-TYPE
  CLUS_1              4              101
  CLUS_2              1               26
  CLUS_3              2               28
D107V10, multiclass
        clus
vv       OR2T12 MUTATED OR2T12 WILD-TYPE
  CLUS_1              3               36
  CLUS_2              2               87
  CLUS_3              2               32

Clustering(108) Variable = OR5AS1 MUTATION ANALYSIS
D108V1, multiclass
        clus
vv       OR5AS1 MUTATED OR5AS1 WILD-TYPE
  CLUS_1              2               36
  CLUS_2              1               45
  CLUS_3              1               14
  CLUS_4              1               21
D108V2, multiclass
        clus
vv       OR5AS1 MUTATED OR5AS1 WILD-TYPE
  CLUS_1              1               10
  CLUS_2              1               49
  CLUS_3              3               57
D108V3, multiclass
        clus
vv       OR5AS1 MUTATED OR5AS1 WILD-TYPE
  CLUS_1              3               53
  CLUS_2              2               65
  CLUS_3              2               53
D108V4, multiclass
        clus
vv       OR5AS1 MUTATED OR5AS1 WILD-TYPE
  CLUS_1              1               26
  CLUS_2              3               27
  CLUS_3              0               17
D108V5, multiclass
        clus
vv       OR5AS1 MUTATED OR5AS1 WILD-TYPE
  CLUS_1              2               32
  CLUS_2              0               47
  CLUS_3              1               30
D108V6, multiclass
        clus
vv       OR5AS1 MUTATED OR5AS1 WILD-TYPE
  CLUS_1              2               29
  CLUS_2              1               26
  CLUS_3              0               33
  CLUS_4              0               21
D108V7, multiclass
        clus
vv       OR5AS1 MUTATED OR5AS1 WILD-TYPE
  CLUS_1              1               34
  CLUS_2              2               60
  CLUS_3              3               50
  CLUS_4              1               27
D108V8, multiclass
        clus
vv       OR5AS1 MUTATED OR5AS1 WILD-TYPE
  CLUS_1              2               62
  CLUS_2              2               28
  CLUS_3              3               81
D108V9, multiclass
        clus
vv       OR5AS1 MUTATED OR5AS1 WILD-TYPE
  CLUS_1              5              100
  CLUS_2              0               27
  CLUS_3              1               29
D108V10, multiclass
        clus
vv       OR5AS1 MUTATED OR5AS1 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              4               85
  CLUS_3              1               33

Clustering(109) Variable = SCN7A MUTATION ANALYSIS
D109V1, multiclass
        clus
vv       SCN7A MUTATED SCN7A WILD-TYPE
  CLUS_1             3              35
  CLUS_2             2              44
  CLUS_3             3              12
  CLUS_4             2              20
D109V2, multiclass
        clus
vv       SCN7A MUTATED SCN7A WILD-TYPE
  CLUS_1             3               8
  CLUS_2             2              48
  CLUS_3             5              55
D109V3, multiclass
        clus
vv       SCN7A MUTATED SCN7A WILD-TYPE
  CLUS_1             5              51
  CLUS_2             3              64
  CLUS_3             6              49
D109V4, multiclass
        clus
vv       SCN7A MUTATED SCN7A WILD-TYPE
  CLUS_1             2              25
  CLUS_2             1              29
  CLUS_3             3              14
D109V5, multiclass
        clus
vv       SCN7A MUTATED SCN7A WILD-TYPE
  CLUS_1             4              30
  CLUS_2             4              43
  CLUS_3             2              29
D109V6, multiclass
        clus
vv       SCN7A MUTATED SCN7A WILD-TYPE
  CLUS_1             7              24
  CLUS_2             0              27
  CLUS_3             2              31
  CLUS_4             1              20
D109V7, multiclass
        clus
vv       SCN7A MUTATED SCN7A WILD-TYPE
  CLUS_1             3              32
  CLUS_2             3              59
  CLUS_3             5              48
  CLUS_4             3              25
D109V8, multiclass
        clus
vv       SCN7A MUTATED SCN7A WILD-TYPE
  CLUS_1             3              61
  CLUS_2             4              26
  CLUS_3             7              77
D109V9, multiclass
        clus
vv       SCN7A MUTATED SCN7A WILD-TYPE
  CLUS_1             9              96
  CLUS_2             2              25
  CLUS_3             2              28
D109V10, multiclass
        clus
vv       SCN7A MUTATED SCN7A WILD-TYPE
  CLUS_1             3              36
  CLUS_2             7              82
  CLUS_3             3              31

Clustering(110) Variable = SNTG2 MUTATION ANALYSIS
D110V1, multiclass
        clus
vv       SNTG2 MUTATED SNTG2 WILD-TYPE
  CLUS_1             1              37
  CLUS_2             3              43
  CLUS_3             0              15
  CLUS_4             0              22
D110V2, multiclass
        clus
vv       SNTG2 MUTATED SNTG2 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             3              47
  CLUS_3             1              59
D110V3, multiclass
        clus
vv       SNTG2 MUTATED SNTG2 WILD-TYPE
  CLUS_1             0              56
  CLUS_2             4              63
  CLUS_3             4              51
D110V4, multiclass
        clus
vv       SNTG2 MUTATED SNTG2 WILD-TYPE
  CLUS_1             2              25
  CLUS_2             1              29
  CLUS_3             1              16
D110V5, multiclass
        clus
vv       SNTG2 MUTATED SNTG2 WILD-TYPE
  CLUS_1             0              34
  CLUS_2             2              45
  CLUS_3             2              29
D110V6, multiclass
        clus
vv       SNTG2 MUTATED SNTG2 WILD-TYPE
  CLUS_1             1              30
  CLUS_2             0              27
  CLUS_3             2              31
  CLUS_4             1              20
D110V7, multiclass
        clus
vv       SNTG2 MUTATED SNTG2 WILD-TYPE
  CLUS_1             0              35
  CLUS_2             4              58
  CLUS_3             2              51
  CLUS_4             2              26
D110V8, multiclass
        clus
vv       SNTG2 MUTATED SNTG2 WILD-TYPE
  CLUS_1             4              60
  CLUS_2             1              29
  CLUS_3             3              81
D110V9, multiclass
        clus
vv       SNTG2 MUTATED SNTG2 WILD-TYPE
  CLUS_1             5             100
  CLUS_2             1              26
  CLUS_3             2              28
D110V10, multiclass
        clus
vv       SNTG2 MUTATED SNTG2 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             4              85
  CLUS_3             3              31

Clustering(111) Variable = FRG2B MUTATION ANALYSIS
D111V1, multiclass
        clus
vv       FRG2B MUTATED FRG2B WILD-TYPE
  CLUS_1             0              38
  CLUS_2             3              43
  CLUS_3             0              15
  CLUS_4             0              22
D111V2, multiclass
        clus
vv       FRG2B MUTATED FRG2B WILD-TYPE
  CLUS_1             0              11
  CLUS_2             3              47
  CLUS_3             0              60
D111V3, multiclass
        clus
vv       FRG2B MUTATED FRG2B WILD-TYPE
  CLUS_1             0              56
  CLUS_2             4              63
  CLUS_3             1              54
D111V4, multiclass
[1] "Remove cluster labels:" "FRG2B MUTATED"         
clus
  FRG2B MUTATED FRG2B WILD-TYPE 
              2              72 
     TCGA-18-3417      TCGA-18-4721      TCGA-18-5592      TCGA-18-5595 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-21-5784      TCGA-21-5786      TCGA-21-5787      TCGA-22-4593 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4613      TCGA-22-5471 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-5472      TCGA-22-5473      TCGA-22-5474      TCGA-22-5477 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-5478      TCGA-22-5480      TCGA-22-5482      TCGA-22-5485 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-33-4566 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-33-4582      TCGA-33-4583      TCGA-33-4586      TCGA-33-6737 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-34-5231      TCGA-34-5232      TCGA-34-5234      TCGA-34-5236 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-34-5239      TCGA-34-5240      TCGA-34-5241      TCGA-34-5927 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-34-5928      TCGA-34-5929      TCGA-37-5819      TCGA-39-5016 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-39-5019      TCGA-39-5021      TCGA-39-5022      TCGA-39-5024 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-39-5027      TCGA-39-5028      TCGA-39-5029      TCGA-39-5030 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-39-5031      TCGA-39-5035      TCGA-39-5036      TCGA-39-5037 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-39-5039      TCGA-43-5668      TCGA-43-6647      TCGA-43-6770 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-43-6771      TCGA-46-6025      TCGA-46-6026      TCGA-56-5897 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-56-5898      TCGA-56-6545      TCGA-56-6546      TCGA-60-2709 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-63-5128      TCGA-63-5131      TCGA-63-6202      TCGA-70-6722 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-70-6723      TCGA-85-6175      TCGA-85-6560      TCGA-85-6561 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
D111V5, multiclass
        clus
vv       FRG2B MUTATED FRG2B WILD-TYPE
  CLUS_1             2              32
  CLUS_2             0              47
  CLUS_3             2              29
D111V6, multiclass
        clus
vv       FRG2B MUTATED FRG2B WILD-TYPE
  CLUS_1             1              30
  CLUS_2             1              26
  CLUS_3             1              32
  CLUS_4             1              20
D111V7, multiclass
        clus
vv       FRG2B MUTATED FRG2B WILD-TYPE
  CLUS_1             0              35
  CLUS_2             3              59
  CLUS_3             2              51
  CLUS_4             0              28
D111V8, multiclass
        clus
vv       FRG2B MUTATED FRG2B WILD-TYPE
  CLUS_1             3              61
  CLUS_2             1              29
  CLUS_3             1              83
D111V9, multiclass
        clus
vv       FRG2B MUTATED FRG2B WILD-TYPE
  CLUS_1             3             102
  CLUS_2             1              26
  CLUS_3             1              29
D111V10, multiclass
        clus
vv       FRG2B MUTATED FRG2B WILD-TYPE
  CLUS_1             3              36
  CLUS_2             1              88
  CLUS_3             1              33

Clustering(112) Variable = OR8K3 MUTATION ANALYSIS
D112V1, multiclass
        clus
vv       OR8K3 MUTATED OR8K3 WILD-TYPE
  CLUS_1             1              37
  CLUS_2             1              45
  CLUS_3             2              13
  CLUS_4             1              21
D112V2, multiclass
        clus
vv       OR8K3 MUTATED OR8K3 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             1              49
  CLUS_3             4              56
D112V3, multiclass
        clus
vv       OR8K3 MUTATED OR8K3 WILD-TYPE
  CLUS_1             1              55
  CLUS_2             3              64
  CLUS_3             3              52
D112V4, multiclass
        clus
vv       OR8K3 MUTATED OR8K3 WILD-TYPE
  CLUS_1             0              27
  CLUS_2             1              29
  CLUS_3             2              15
D112V5, multiclass
        clus
vv       OR8K3 MUTATED OR8K3 WILD-TYPE
  CLUS_1             2              32
  CLUS_2             2              45
  CLUS_3             1              30
D112V6, multiclass
        clus
vv       OR8K3 MUTATED OR8K3 WILD-TYPE
  CLUS_1             1              30
  CLUS_2             1              26
  CLUS_3             2              31
  CLUS_4             1              20
D112V7, multiclass
        clus
vv       OR8K3 MUTATED OR8K3 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             1              61
  CLUS_3             4              49
  CLUS_4             0              28
D112V8, multiclass
        clus
vv       OR8K3 MUTATED OR8K3 WILD-TYPE
  CLUS_1             2              62
  CLUS_2             4              26
  CLUS_3             1              83
D112V9, multiclass
        clus
vv       OR8K3 MUTATED OR8K3 WILD-TYPE
  CLUS_1             4             101
  CLUS_2             1              26
  CLUS_3             0              30
D112V10, multiclass
        clus
vv       OR8K3 MUTATED OR8K3 WILD-TYPE
  CLUS_1             3              36
  CLUS_2             2              87
  CLUS_3             0              34

Clustering(113) Variable = OR5T1 MUTATION ANALYSIS
D113V1, multiclass
        clus
vv       OR5T1 MUTATED OR5T1 WILD-TYPE
  CLUS_1             1              37
  CLUS_2             4              42
  CLUS_3             3              12
  CLUS_4             1              21
D113V2, multiclass
        clus
vv       OR5T1 MUTATED OR5T1 WILD-TYPE
  CLUS_1             1              10
  CLUS_2             4              46
  CLUS_3             4              56
D113V3, multiclass
        clus
vv       OR5T1 MUTATED OR5T1 WILD-TYPE
  CLUS_1             3              53
  CLUS_2             5              62
  CLUS_3             2              53
D113V4, multiclass
        clus
vv       OR5T1 MUTATED OR5T1 WILD-TYPE
  CLUS_1             1              26
  CLUS_2             2              28
  CLUS_3             0              17
D113V5, multiclass
        clus
vv       OR5T1 MUTATED OR5T1 WILD-TYPE
  CLUS_1             2              32
  CLUS_2             2              45
  CLUS_3             1              30
D113V6, multiclass
        clus
vv       OR5T1 MUTATED OR5T1 WILD-TYPE
  CLUS_1             1              30
  CLUS_2             2              25
  CLUS_3             2              31
  CLUS_4             0              21
D113V7, multiclass
        clus
vv       OR5T1 MUTATED OR5T1 WILD-TYPE
  CLUS_1             0              35
  CLUS_2             4              58
  CLUS_3             5              48
  CLUS_4             1              27
D113V8, multiclass
        clus
vv       OR5T1 MUTATED OR5T1 WILD-TYPE
  CLUS_1             4              60
  CLUS_2             1              29
  CLUS_3             5              79
D113V9, multiclass
        clus
vv       OR5T1 MUTATED OR5T1 WILD-TYPE
  CLUS_1             6              99
  CLUS_2             0              27
  CLUS_3             3              27
D113V10, multiclass
        clus
vv       OR5T1 MUTATED OR5T1 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             5              84
  CLUS_3             3              31

Clustering(114) Variable = FCAR MUTATION ANALYSIS
D114V1, multiclass
        clus
vv       FCAR MUTATED FCAR WILD-TYPE
  CLUS_1            0             38
  CLUS_2            2             44
  CLUS_3            3             12
  CLUS_4            0             22
D114V2, multiclass
        clus
vv       FCAR MUTATED FCAR WILD-TYPE
  CLUS_1            1             10
  CLUS_2            2             48
  CLUS_3            2             58
D114V3, multiclass
        clus
vv       FCAR MUTATED FCAR WILD-TYPE
  CLUS_1            0             56
  CLUS_2            5             62
  CLUS_3            3             52
D114V4, multiclass
        clus
vv       FCAR MUTATED FCAR WILD-TYPE
  CLUS_1            0             27
  CLUS_2            2             28
  CLUS_3            1             16
D114V5, multiclass
        clus
vv       FCAR MUTATED FCAR WILD-TYPE
  CLUS_1            2             32
  CLUS_2            2             45
  CLUS_3            1             30
D114V6, multiclass
        clus
vv       FCAR MUTATED FCAR WILD-TYPE
  CLUS_1            3             28
  CLUS_2            0             27
  CLUS_3            1             32
  CLUS_4            1             20
D114V7, multiclass
        clus
vv       FCAR MUTATED FCAR WILD-TYPE
  CLUS_1            0             35
  CLUS_2            4             58
  CLUS_3            3             50
  CLUS_4            1             27
D114V8, multiclass
        clus
vv       FCAR MUTATED FCAR WILD-TYPE
  CLUS_1            4             60
  CLUS_2            2             28
  CLUS_3            2             82
D114V9, multiclass
        clus
vv       FCAR MUTATED FCAR WILD-TYPE
  CLUS_1            4            101
  CLUS_2            1             26
  CLUS_3            2             28
D114V10, multiclass
        clus
vv       FCAR MUTATED FCAR WILD-TYPE
  CLUS_1            1             38
  CLUS_2            3             86
  CLUS_3            3             31

Clustering(115) Variable = OR2M7 MUTATION ANALYSIS
D115V1, multiclass
        clus
vv       OR2M7 MUTATED OR2M7 WILD-TYPE
  CLUS_1             1              37
  CLUS_2             2              44
  CLUS_3             2              13
  CLUS_4             0              22
D115V2, multiclass
        clus
vv       OR2M7 MUTATED OR2M7 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             2              48
  CLUS_3             3              57
D115V3, multiclass
        clus
vv       OR2M7 MUTATED OR2M7 WILD-TYPE
  CLUS_1             2              54
  CLUS_2             4              63
  CLUS_3             2              53
D115V4, multiclass
        clus
vv       OR2M7 MUTATED OR2M7 WILD-TYPE
  CLUS_1             1              26
  CLUS_2             2              28
  CLUS_3             0              17
D115V5, multiclass
        clus
vv       OR2M7 MUTATED OR2M7 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             4              43
  CLUS_3             1              30
D115V6, multiclass
        clus
vv       OR2M7 MUTATED OR2M7 WILD-TYPE
  CLUS_1             1              30
  CLUS_2             1              26
  CLUS_3             2              31
  CLUS_4             2              19
D115V7, multiclass
        clus
vv       OR2M7 MUTATED OR2M7 WILD-TYPE
  CLUS_1             2              33
  CLUS_2             3              59
  CLUS_3             2              51
  CLUS_4             1              27
D115V8, multiclass
        clus
vv       OR2M7 MUTATED OR2M7 WILD-TYPE
  CLUS_1             4              60
  CLUS_2             2              28
  CLUS_3             2              82
D115V9, multiclass
        clus
vv       OR2M7 MUTATED OR2M7 WILD-TYPE
  CLUS_1             4             101
  CLUS_2             1              26
  CLUS_3             2              28
D115V10, multiclass
        clus
vv       OR2M7 MUTATED OR2M7 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             2              87
  CLUS_3             3              31

Clustering(116) Variable = CPXCR1 MUTATION ANALYSIS
D116V1, multiclass
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  CLUS_1              1               37
  CLUS_2              2               44
  CLUS_3              1               14
  CLUS_4              0               22
D116V2, multiclass
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              2               48
  CLUS_3              2               58
D116V3, multiclass
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  CLUS_1              2               54
  CLUS_2              3               64
  CLUS_3              1               54
D116V4, multiclass
[1] "Remove cluster labels:" "CPXCR1 MUTATED"        
clus
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               2               72 
      TCGA-18-3417       TCGA-18-4721       TCGA-18-5595       TCGA-21-5782 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-21-5784       TCGA-21-5786       TCGA-21-5787       TCGA-22-4593 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4613       TCGA-22-5471 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5472       TCGA-22-5473       TCGA-22-5474       TCGA-22-5477 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5478       TCGA-22-5480       TCGA-22-5482       TCGA-22-5485 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5489       TCGA-22-5491       TCGA-22-5492       TCGA-33-4566 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-33-4582       TCGA-33-4583       TCGA-33-4586       TCGA-33-6737 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-34-5231       TCGA-34-5232       TCGA-34-5234       TCGA-34-5236 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-34-5239       TCGA-34-5240       TCGA-34-5241       TCGA-34-5927 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-34-5928       TCGA-34-5929       TCGA-37-5819       TCGA-39-5016 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-39-5019       TCGA-39-5021       TCGA-39-5022       TCGA-39-5024 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-39-5027       TCGA-39-5028       TCGA-39-5029       TCGA-39-5030 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-39-5031       TCGA-39-5035       TCGA-39-5036       TCGA-39-5037 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-39-5039       TCGA-43-5668       TCGA-43-6143       TCGA-43-6647 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-43-6770       TCGA-43-6771       TCGA-46-6025       TCGA-46-6026 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-56-5897       TCGA-56-5898       TCGA-56-6545       TCGA-56-6546 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2709       TCGA-63-5128       TCGA-63-5131       TCGA-63-6202 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-70-6723       TCGA-85-6175       TCGA-85-6560       TCGA-85-6561 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
D116V5, multiclass
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  CLUS_1              1               33
  CLUS_2              2               45
  CLUS_3              1               30
D116V6, multiclass
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  CLUS_1              2               29
  CLUS_2              1               26
  CLUS_3              1               32
  CLUS_4              0               21
D116V7, multiclass
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  CLUS_1              1               34
  CLUS_2              3               59
  CLUS_3              0               53
  CLUS_4              2               26
D116V8, multiclass
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  CLUS_1              3               61
  CLUS_2              0               30
  CLUS_3              3               81
D116V9, multiclass
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  CLUS_1              2              103
  CLUS_2              2               25
  CLUS_3              2               28
D116V10, multiclass
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              4               85
  CLUS_3              2               32

Clustering(117) Variable = COL6A6 MUTATION ANALYSIS
D117V1, multiclass
        clus
vv       COL6A6 MUTATED COL6A6 WILD-TYPE
  CLUS_1              5               33
  CLUS_2              3               43
  CLUS_3              3               12
  CLUS_4              4               18
D117V2, multiclass
        clus
vv       COL6A6 MUTATED COL6A6 WILD-TYPE
  CLUS_1              1               10
  CLUS_2              3               47
  CLUS_3             11               49
D117V3, multiclass
        clus
vv       COL6A6 MUTATED COL6A6 WILD-TYPE
  CLUS_1              3               53
  CLUS_2              7               60
  CLUS_3              9               46
D117V4, multiclass
        clus
vv       COL6A6 MUTATED COL6A6 WILD-TYPE
  CLUS_1              2               25
  CLUS_2              3               27
  CLUS_3              3               14
D117V5, multiclass
        clus
vv       COL6A6 MUTATED COL6A6 WILD-TYPE
  CLUS_1              7               27
  CLUS_2              3               44
  CLUS_3              1               30
D117V6, multiclass
        clus
vv       COL6A6 MUTATED COL6A6 WILD-TYPE
  CLUS_1              7               24
  CLUS_2              2               25
  CLUS_3              2               31
  CLUS_4              0               21
D117V7, multiclass
        clus
vv       COL6A6 MUTATED COL6A6 WILD-TYPE
  CLUS_1              2               33
  CLUS_2              5               57
  CLUS_3              7               46
  CLUS_4              5               23
D117V8, multiclass
        clus
vv       COL6A6 MUTATED COL6A6 WILD-TYPE
  CLUS_1              4               60
  CLUS_2              4               26
  CLUS_3             11               73
D117V9, multiclass
        clus
vv       COL6A6 MUTATED COL6A6 WILD-TYPE
  CLUS_1             12               93
  CLUS_2              2               25
  CLUS_3              3               27
D117V10, multiclass
        clus
vv       COL6A6 MUTATED COL6A6 WILD-TYPE
  CLUS_1              7               32
  CLUS_2              8               81
  CLUS_3              2               32

Clustering(118) Variable = GP2 MUTATION ANALYSIS
D118V1, multiclass
        clus
vv       GP2 MUTATED GP2 WILD-TYPE
  CLUS_1           2            36
  CLUS_2           2            44
  CLUS_3           2            13
  CLUS_4           2            20
D118V2, multiclass
        clus
vv       GP2 MUTATED GP2 WILD-TYPE
  CLUS_1           1            10
  CLUS_2           2            48
  CLUS_3           5            55
D118V3, multiclass
        clus
vv       GP2 MUTATED GP2 WILD-TYPE
  CLUS_1           3            53
  CLUS_2           6            61
  CLUS_3           2            53
D118V4, multiclass
        clus
vv       GP2 MUTATED GP2 WILD-TYPE
  CLUS_1           1            26
  CLUS_2           1            29
  CLUS_3           2            15
D118V5, multiclass
        clus
vv       GP2 MUTATED GP2 WILD-TYPE
  CLUS_1           2            32
  CLUS_2           1            46
  CLUS_3           2            29
D118V6, multiclass
        clus
vv       GP2 MUTATED GP2 WILD-TYPE
  CLUS_1           2            29
  CLUS_2           2            25
  CLUS_3           1            32
  CLUS_4           0            21
D118V7, multiclass
        clus
vv       GP2 MUTATED GP2 WILD-TYPE
  CLUS_1           0            35
  CLUS_2           3            59
  CLUS_3           6            47
  CLUS_4           2            26
D118V8, multiclass
        clus
vv       GP2 MUTATED GP2 WILD-TYPE
  CLUS_1           3            61
  CLUS_2           2            28
  CLUS_3           6            78
D118V9, multiclass
        clus
vv       GP2 MUTATED GP2 WILD-TYPE
  CLUS_1           7            98
  CLUS_2           2            25
  CLUS_3           2            28
D118V10, multiclass
        clus
vv       GP2 MUTATED GP2 WILD-TYPE
  CLUS_1           5            34
  CLUS_2           4            85
  CLUS_3           2            32

Clustering(119) Variable = CCDC85A MUTATION ANALYSIS
D119V1, multiclass
        clus
vv       CCDC85A MUTATED CCDC85A WILD-TYPE
  CLUS_1               4                34
  CLUS_2               2                44
  CLUS_3               1                14
  CLUS_4               1                21
D119V2, multiclass
        clus
vv       CCDC85A MUTATED CCDC85A WILD-TYPE
  CLUS_1               2                 9
  CLUS_2               2                48
  CLUS_3               4                56
D119V3, multiclass
        clus
vv       CCDC85A MUTATED CCDC85A WILD-TYPE
  CLUS_1               2                54
  CLUS_2               3                64
  CLUS_3               4                51
D119V4, multiclass
        clus
vv       CCDC85A MUTATED CCDC85A WILD-TYPE
  CLUS_1               0                27
  CLUS_2               3                27
  CLUS_3               0                17
D119V5, multiclass
        clus
vv       CCDC85A MUTATED CCDC85A WILD-TYPE
  CLUS_1               2                32
  CLUS_2               1                46
  CLUS_3               1                30
D119V6, multiclass
        clus
vv       CCDC85A MUTATED CCDC85A WILD-TYPE
  CLUS_1               2                29
  CLUS_2               1                26
  CLUS_3               1                32
  CLUS_4               0                21
D119V7, multiclass
        clus
vv       CCDC85A MUTATED CCDC85A WILD-TYPE
  CLUS_1               2                33
  CLUS_2               3                59
  CLUS_3               3                50
  CLUS_4               1                27
D119V8, multiclass
        clus
vv       CCDC85A MUTATED CCDC85A WILD-TYPE
  CLUS_1               3                61
  CLUS_2               1                29
  CLUS_3               5                79
D119V9, multiclass
        clus
vv       CCDC85A MUTATED CCDC85A WILD-TYPE
  CLUS_1               7                98
  CLUS_2               0                27
  CLUS_3               0                30
D119V10, multiclass
        clus
vv       CCDC85A MUTATED CCDC85A WILD-TYPE
  CLUS_1               2                37
  CLUS_2               4                85
  CLUS_3               1                33

Clustering(120) Variable = OR2T3 MUTATION ANALYSIS
D120V1, multiclass
        clus
vv       OR2T3 MUTATED OR2T3 WILD-TYPE
  CLUS_1             1              37
  CLUS_2             2              44
  CLUS_3             0              15
  CLUS_4             2              20
D120V2, multiclass
        clus
vv       OR2T3 MUTATED OR2T3 WILD-TYPE
  CLUS_1             2               9
  CLUS_2             2              48
  CLUS_3             1              59
D120V3, multiclass
        clus
vv       OR2T3 MUTATED OR2T3 WILD-TYPE
  CLUS_1             2              54
  CLUS_2             2              65
  CLUS_3             2              53
D120V4, multiclass
[1] "Remove cluster labels:" "OR2T3 MUTATED"         
clus
  OR2T3 MUTATED OR2T3 WILD-TYPE 
              2              72 
     TCGA-18-3417      TCGA-18-4721      TCGA-18-5592      TCGA-18-5595 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4599      TCGA-22-4601      TCGA-22-4613 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-5471      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-33-4582      TCGA-33-4583      TCGA-33-4586      TCGA-33-6737 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-34-5231      TCGA-34-5232      TCGA-34-5234      TCGA-34-5236 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-34-5239      TCGA-34-5240      TCGA-34-5241      TCGA-34-5927 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-34-5928      TCGA-34-5929      TCGA-37-5819      TCGA-39-5016 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-39-5019      TCGA-39-5021      TCGA-39-5022      TCGA-39-5024 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-39-5027      TCGA-39-5028      TCGA-39-5029      TCGA-39-5030 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-39-5031      TCGA-39-5035      TCGA-39-5036      TCGA-39-5037 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-39-5039      TCGA-43-5668      TCGA-43-6647      TCGA-43-6770 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-43-6771      TCGA-46-6025      TCGA-46-6026      TCGA-56-5897 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-56-5898      TCGA-56-6545      TCGA-56-6546      TCGA-60-2709 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-63-5128      TCGA-63-5131      TCGA-63-6202      TCGA-70-6722 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-70-6723      TCGA-85-6175      TCGA-85-6560      TCGA-85-6561 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
D120V5, multiclass
        clus
vv       OR2T3 MUTATED OR2T3 WILD-TYPE
  CLUS_1             2              32
  CLUS_2             0              47
  CLUS_3             1              30
D120V6, multiclass
        clus
vv       OR2T3 MUTATED OR2T3 WILD-TYPE
  CLUS_1             2              29
  CLUS_2             1              26
  CLUS_3             0              33
  CLUS_4             0              21
D120V7, multiclass
        clus
vv       OR2T3 MUTATED OR2T3 WILD-TYPE
  CLUS_1             0              35
  CLUS_2             1              61
  CLUS_3             3              50
  CLUS_4             2              26
D120V8, multiclass
        clus
vv       OR2T3 MUTATED OR2T3 WILD-TYPE
  CLUS_1             1              63
  CLUS_2             2              28
  CLUS_3             3              81
D120V9, multiclass
        clus
vv       OR2T3 MUTATED OR2T3 WILD-TYPE
  CLUS_1             3             102
  CLUS_2             1              26
  CLUS_3             1              29
D120V10, multiclass
        clus
vv       OR2T3 MUTATED OR2T3 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             3              86
  CLUS_3             1              33

Clustering(121) Variable = EIF3E MUTATION ANALYSIS
D121V1, multiclass
        clus
vv       EIF3E MUTATED EIF3E WILD-TYPE
  CLUS_1             0              38
  CLUS_2             2              44
  CLUS_3             0              15
  CLUS_4             2              20
D121V2, multiclass
        clus
vv       EIF3E MUTATED EIF3E WILD-TYPE
  CLUS_1             0              11
  CLUS_2             2              48
  CLUS_3             2              58
D121V3, multiclass
        clus
vv       EIF3E MUTATED EIF3E WILD-TYPE
  CLUS_1             1              55
  CLUS_2             3              64
  CLUS_3             1              54
D121V4, multiclass
        clus
vv       EIF3E MUTATED EIF3E WILD-TYPE
  CLUS_1             1              26
  CLUS_2             1              29
  CLUS_3             1              16
D121V5, multiclass
[1] "Remove cluster labels:" "EIF3E MUTATED"         
clus
  EIF3E MUTATED EIF3E WILD-TYPE 
              1             111 
     TCGA-18-4721      TCGA-18-5592      TCGA-18-5595      TCGA-21-1070 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-21-1071      TCGA-21-1076      TCGA-21-1078      TCGA-21-1081 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-1011      TCGA-22-4591      TCGA-22-4607      TCGA-22-5471 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-5472      TCGA-22-5473      TCGA-22-5474      TCGA-22-5477 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-5478      TCGA-22-5480      TCGA-22-5482      TCGA-22-5485 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-33-4532 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4586 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-33-6737      TCGA-34-2596      TCGA-34-2608      TCGA-34-5231 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-34-5232      TCGA-34-5234      TCGA-34-5236      TCGA-34-5241 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3789 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-4141      TCGA-37-5819 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-39-5016      TCGA-39-5019      TCGA-39-5021      TCGA-39-5022 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-39-5024      TCGA-39-5027      TCGA-39-5028      TCGA-39-5029 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-39-5030      TCGA-39-5031      TCGA-39-5035      TCGA-39-5037 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-43-2578      TCGA-43-3394      TCGA-43-5668      TCGA-43-6143 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-43-6770      TCGA-43-6771      TCGA-46-6025      TCGA-46-6026 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-56-5897      TCGA-56-5898      TCGA-56-6545      TCGA-56-6546 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2708      TCGA-60-2709      TCGA-60-2710 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2711      TCGA-60-2712      TCGA-60-2713      TCGA-60-2719 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2720      TCGA-60-2721      TCGA-60-2724      TCGA-60-2725 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2726      TCGA-63-5128      TCGA-63-5131      TCGA-63-6202 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2727      TCGA-66-2758      TCGA-66-2766      TCGA-66-2767 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2773      TCGA-66-2777 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2778      TCGA-66-2781      TCGA-66-2782      TCGA-66-2783 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2785      TCGA-66-2788      TCGA-66-2791      TCGA-66-2794 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2795      TCGA-66-2800      TCGA-70-6722      TCGA-70-6723 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-85-6175      TCGA-85-6560      TCGA-85-6561 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
D121V6, multiclass
[1] "Remove cluster labels:" "EIF3E MUTATED"         
clus
  EIF3E MUTATED EIF3E WILD-TYPE 
              1             111 
     TCGA-18-4721      TCGA-18-5592      TCGA-18-5595      TCGA-21-1070 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-21-1071      TCGA-21-1076      TCGA-21-1078      TCGA-21-1081 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-1011      TCGA-22-4591      TCGA-22-4607      TCGA-22-5471 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-5472      TCGA-22-5473      TCGA-22-5474      TCGA-22-5477 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-5478      TCGA-22-5480      TCGA-22-5482      TCGA-22-5485 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-33-4532 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4586 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-33-6737      TCGA-34-2596      TCGA-34-2608      TCGA-34-5231 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-34-5232      TCGA-34-5234      TCGA-34-5236      TCGA-34-5241 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3789 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-4141      TCGA-37-5819 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-39-5016      TCGA-39-5019      TCGA-39-5021      TCGA-39-5022 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-39-5024      TCGA-39-5027      TCGA-39-5028      TCGA-39-5029 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-39-5030      TCGA-39-5031      TCGA-39-5035      TCGA-39-5037 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-43-2578      TCGA-43-3394      TCGA-43-5668      TCGA-43-6143 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-43-6770      TCGA-43-6771      TCGA-46-6025      TCGA-46-6026 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-56-5897      TCGA-56-5898      TCGA-56-6545      TCGA-56-6546 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2708      TCGA-60-2709      TCGA-60-2710 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2711      TCGA-60-2712      TCGA-60-2713      TCGA-60-2719 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2720      TCGA-60-2721      TCGA-60-2724      TCGA-60-2725 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2726      TCGA-63-5128      TCGA-63-5131      TCGA-63-6202 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2727      TCGA-66-2758      TCGA-66-2766      TCGA-66-2767 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2773      TCGA-66-2777 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2778      TCGA-66-2781      TCGA-66-2782      TCGA-66-2783 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2785      TCGA-66-2788      TCGA-66-2791      TCGA-66-2794 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2795      TCGA-66-2800      TCGA-70-6722      TCGA-70-6723 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-85-6175      TCGA-85-6560      TCGA-85-6561 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
D121V7, multiclass
        clus
vv       EIF3E MUTATED EIF3E WILD-TYPE
  CLUS_1             0              35
  CLUS_2             2              60
  CLUS_3             3              50
  CLUS_4             0              28
D121V8, multiclass
        clus
vv       EIF3E MUTATED EIF3E WILD-TYPE
  CLUS_1             2              62
  CLUS_2             3              27
  CLUS_3             0              84
D121V9, multiclass
        clus
vv       EIF3E MUTATED EIF3E WILD-TYPE
  CLUS_1             2             103
  CLUS_2             1              26
  CLUS_3             1              29
D121V10, multiclass
        clus
vv       EIF3E MUTATED EIF3E WILD-TYPE
  CLUS_1             0              39
  CLUS_2             3              86
  CLUS_3             1              33

Clustering(122) Variable = PRR23B MUTATION ANALYSIS
D122V1, multiclass
        clus
vv       PRR23B MUTATED PRR23B WILD-TYPE
  CLUS_1              2               36
  CLUS_2              1               45
  CLUS_3              0               15
  CLUS_4              3               19
D122V2, multiclass
        clus
vv       PRR23B MUTATED PRR23B WILD-TYPE
  CLUS_1              2                9
  CLUS_2              1               49
  CLUS_3              3               57
D122V3, multiclass
        clus
vv       PRR23B MUTATED PRR23B WILD-TYPE
  CLUS_1              2               54
  CLUS_2              3               64
  CLUS_3              4               51
D122V4, multiclass
        clus
vv       PRR23B MUTATED PRR23B WILD-TYPE
  CLUS_1              0               27
  CLUS_2              2               28
  CLUS_3              1               16
D122V5, multiclass
        clus
vv       PRR23B MUTATED PRR23B WILD-TYPE
  CLUS_1              0               34
  CLUS_2              2               45
  CLUS_3              1               30
D122V6, multiclass
        clus
vv       PRR23B MUTATED PRR23B WILD-TYPE
  CLUS_1              0               31
  CLUS_2              0               27
  CLUS_3              3               30
  CLUS_4              0               21
D122V7, multiclass
        clus
vv       PRR23B MUTATED PRR23B WILD-TYPE
  CLUS_1              1               34
  CLUS_2              3               59
  CLUS_3              4               49
  CLUS_4              1               27
D122V8, multiclass
        clus
vv       PRR23B MUTATED PRR23B WILD-TYPE
  CLUS_1              2               62
  CLUS_2              2               28
  CLUS_3              5               79
D122V9, multiclass
        clus
vv       PRR23B MUTATED PRR23B WILD-TYPE
  CLUS_1              8               97
  CLUS_2              1               26
  CLUS_3              0               30
D122V10, multiclass
        clus
vv       PRR23B MUTATED PRR23B WILD-TYPE
  CLUS_1              2               37
  CLUS_2              5               84
  CLUS_3              2               32

Clustering(123) Variable = RTN1 MUTATION ANALYSIS
D123V1, multiclass
        clus
vv       RTN1 MUTATED RTN1 WILD-TYPE
  CLUS_1            1             37
  CLUS_2            0             46
  CLUS_3            2             13
  CLUS_4            3             19
D123V2, multiclass
        clus
vv       RTN1 MUTATED RTN1 WILD-TYPE
  CLUS_1            3              8
  CLUS_2            0             50
  CLUS_3            3             57
D123V3, multiclass
        clus
vv       RTN1 MUTATED RTN1 WILD-TYPE
  CLUS_1            3             53
  CLUS_2            3             64
  CLUS_3            6             49
D123V4, multiclass
        clus
vv       RTN1 MUTATED RTN1 WILD-TYPE
  CLUS_1            3             24
  CLUS_2            3             27
  CLUS_3            1             16
D123V5, multiclass
        clus
vv       RTN1 MUTATED RTN1 WILD-TYPE
  CLUS_1            2             32
  CLUS_2            2             45
  CLUS_3            2             29
D123V6, multiclass
        clus
vv       RTN1 MUTATED RTN1 WILD-TYPE
  CLUS_1            3             28
  CLUS_2            0             27
  CLUS_3            2             31
  CLUS_4            1             20
D123V7, multiclass
        clus
vv       RTN1 MUTATED RTN1 WILD-TYPE
  CLUS_1            0             35
  CLUS_2            3             59
  CLUS_3            6             47
  CLUS_4            3             25
D123V8, multiclass
        clus
vv       RTN1 MUTATED RTN1 WILD-TYPE
  CLUS_1            2             62
  CLUS_2            3             27
  CLUS_3            7             77
D123V9, multiclass
        clus
vv       RTN1 MUTATED RTN1 WILD-TYPE
  CLUS_1            6             99
  CLUS_2            4             23
  CLUS_3            1             29
D123V10, multiclass
        clus
vv       RTN1 MUTATED RTN1 WILD-TYPE
  CLUS_1            2             37
  CLUS_2            7             82
  CLUS_3            2             32
                     V1                      V2                      V3 
            "MRNA_CNMF"    "MRNA_CHIERARCHICAL"               "CN_CNMF" 
                     V4                      V5                      V6 
     "METHLYATION_CNMF"             "RPPA_CNMF"    "RPPA_CHIERARCHICAL" 
                     V7                      V8                      V9 
         "MRNASEQ_CNMF" "MRNASEQ_CHIERARCHICAL"           "MIRSEQ_CNMF" 
                    V10 
 "MIRSEQ_CHIERARCHICAL" 
> q(save="no")
