
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.4.4139/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.4.4139/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/411582/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/SARC-TP/3144297/1.GDAC_mergedClustering.Finished/SARC-TP.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=SARC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=SARC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=52, in cluster file=51, common to both=51
[1] 40 51
[1] "Amp Peak  1(1p32.1)"
[1] 3
      AMP PEAK  1(1P32.1) CNV AMP PEAK  1(1P32.1) WILD-TYPE 
                           15                            36 
      AMP PEAK  1(1P32.1) CNV AMP PEAK  1(1P32.1) WILD-TYPE 
                           15                            36 
[1] "Amp Peak  2(1q24.3)"
[1] 3
      AMP PEAK  2(1Q24.3) CNV AMP PEAK  2(1Q24.3) WILD-TYPE 
                           22                            29 
      AMP PEAK  2(1Q24.3) CNV AMP PEAK  2(1Q24.3) WILD-TYPE 
                           22                            29 
[1] "Amp Peak  3(4p15.2)"
[1] 3
      AMP PEAK  3(4P15.2) CNV AMP PEAK  3(4P15.2) WILD-TYPE 
                           16                            35 
      AMP PEAK  3(4P15.2) CNV AMP PEAK  3(4P15.2) WILD-TYPE 
                           16                            35 
[1] "Amp Peak  4(5p14.2)"
[1] 3
      AMP PEAK  4(5P14.2) CNV AMP PEAK  4(5P14.2) WILD-TYPE 
                           21                            30 
      AMP PEAK  4(5P14.2) CNV AMP PEAK  4(5P14.2) WILD-TYPE 
                           21                            30 
[1] "Amp Peak  5(6p21.1)"
[1] 3
      AMP PEAK  5(6P21.1) CNV AMP PEAK  5(6P21.1) WILD-TYPE 
                           12                            39 
      AMP PEAK  5(6P21.1) CNV AMP PEAK  5(6P21.1) WILD-TYPE 
                           12                            39 
[1] "Amp Peak  6(6q25.1)"
[1] 3
      AMP PEAK  6(6Q25.1) CNV AMP PEAK  6(6Q25.1) WILD-TYPE 
                           14                            37 
      AMP PEAK  6(6Q25.1) CNV AMP PEAK  6(6Q25.1) WILD-TYPE 
                           14                            37 
[1] "Amp Peak  7(7p15.3)"
[1] 3
      AMP PEAK  7(7P15.3) CNV AMP PEAK  7(7P15.3) WILD-TYPE 
                           19                            32 
      AMP PEAK  7(7P15.3) CNV AMP PEAK  7(7P15.3) WILD-TYPE 
                           19                            32 
[1] "Amp Peak  8(11q22.2)"
[1] 3
      AMP PEAK  8(11Q22.2) CNV AMP PEAK  8(11Q22.2) WILD-TYPE 
                            12                             39 
      AMP PEAK  8(11Q22.2) CNV AMP PEAK  8(11Q22.2) WILD-TYPE 
                            12                             39 
[1] "Amp Peak  9(12p13.32)"
[1] 3
      AMP PEAK  9(12P13.32) CNV AMP PEAK  9(12P13.32) WILD-TYPE 
                             15                              36 
      AMP PEAK  9(12P13.32) CNV AMP PEAK  9(12P13.32) WILD-TYPE 
                             15                              36 
[1] "Amp Peak 10(12q15)"
[1] 3
      AMP PEAK 10(12Q15) CNV AMP PEAK 10(12Q15) WILD-TYPE 
                          26                           25 
      AMP PEAK 10(12Q15) CNV AMP PEAK 10(12Q15) WILD-TYPE 
                          26                           25 
[1] "Amp Peak 11(17p12)"
[1] 3
      AMP PEAK 11(17P12) CNV AMP PEAK 11(17P12) WILD-TYPE 
                          18                           33 
      AMP PEAK 11(17P12) CNV AMP PEAK 11(17P12) WILD-TYPE 
                          18                           33 
[1] "Amp Peak 12(19p13.2)"
[1] 3
      AMP PEAK 12(19P13.2) CNV AMP PEAK 12(19P13.2) WILD-TYPE 
                            21                             30 
      AMP PEAK 12(19P13.2) CNV AMP PEAK 12(19P13.2) WILD-TYPE 
                            21                             30 
[1] "Amp Peak 13(Xq21.1)"
[1] 3
      AMP PEAK 13(XQ21.1) CNV AMP PEAK 13(XQ21.1) WILD-TYPE 
                           10                            41 
      AMP PEAK 13(XQ21.1) CNV AMP PEAK 13(XQ21.1) WILD-TYPE 
                           10                            41 
[1] "Del Peak  1(1p36.32)"
[1] 3
      DEL PEAK  1(1P36.32) CNV DEL PEAK  1(1P36.32) WILD-TYPE 
                            18                             33 
      DEL PEAK  1(1P36.32) CNV DEL PEAK  1(1P36.32) WILD-TYPE 
                            18                             33 
[1] "Del Peak  2(1p32.3)"
[1] 3
      DEL PEAK  2(1P32.3) CNV DEL PEAK  2(1P32.3) WILD-TYPE 
                           13                            38 
      DEL PEAK  2(1P32.3) CNV DEL PEAK  2(1P32.3) WILD-TYPE 
                           13                            38 
[1] "Del Peak  3(1q44)"
[1] 3
      DEL PEAK  3(1Q44) CNV DEL PEAK  3(1Q44) WILD-TYPE 
                         18                          33 
      DEL PEAK  3(1Q44) CNV DEL PEAK  3(1Q44) WILD-TYPE 
                         18                          33 
[1] "Del Peak  4(2q37.3)"
[1] 3
      DEL PEAK  4(2Q37.3) CNV DEL PEAK  4(2Q37.3) WILD-TYPE 
                           24                            27 
      DEL PEAK  4(2Q37.3) CNV DEL PEAK  4(2Q37.3) WILD-TYPE 
                           24                            27 
[1] "Del Peak  5(3p21.31)"
[1] 3
      DEL PEAK  5(3P21.31) CNV DEL PEAK  5(3P21.31) WILD-TYPE 
                            15                             36 
      DEL PEAK  5(3P21.31) CNV DEL PEAK  5(3P21.31) WILD-TYPE 
                            15                             36 
[1] "Del Peak  6(3q25.1)"
[1] 3
      DEL PEAK  6(3Q25.1) CNV DEL PEAK  6(3Q25.1) WILD-TYPE 
                           17                            34 
      DEL PEAK  6(3Q25.1) CNV DEL PEAK  6(3Q25.1) WILD-TYPE 
                           17                            34 
[1] "Del Peak  7(4q35.1)"
[1] 3
      DEL PEAK  7(4Q35.1) CNV DEL PEAK  7(4Q35.1) WILD-TYPE 
                           25                            26 
      DEL PEAK  7(4Q35.1) CNV DEL PEAK  7(4Q35.1) WILD-TYPE 
                           25                            26 
[1] "Del Peak  8(5q23.3)"
[1] 3
      DEL PEAK  8(5Q23.3) CNV DEL PEAK  8(5Q23.3) WILD-TYPE 
                           10                            41 
      DEL PEAK  8(5Q23.3) CNV DEL PEAK  8(5Q23.3) WILD-TYPE 
                           10                            41 
[1] "Del Peak  9(6q15)"
[1] 3
      DEL PEAK  9(6Q15) CNV DEL PEAK  9(6Q15) WILD-TYPE 
                         14                          37 
      DEL PEAK  9(6Q15) CNV DEL PEAK  9(6Q15) WILD-TYPE 
                         14                          37 
[1] "Del Peak 10(7q36.3)"
[1] 3
      DEL PEAK 10(7Q36.3) CNV DEL PEAK 10(7Q36.3) WILD-TYPE 
                           14                            37 
      DEL PEAK 10(7Q36.3) CNV DEL PEAK 10(7Q36.3) WILD-TYPE 
                           14                            37 
[1] "Del Peak 11(8p23.2)"
[1] 3
      DEL PEAK 11(8P23.2) CNV DEL PEAK 11(8P23.2) WILD-TYPE 
                           16                            35 
      DEL PEAK 11(8P23.2) CNV DEL PEAK 11(8P23.2) WILD-TYPE 
                           16                            35 
[1] "Del Peak 12(9p21.3)"
[1] 3
      DEL PEAK 12(9P21.3) CNV DEL PEAK 12(9P21.3) WILD-TYPE 
                           24                            27 
      DEL PEAK 12(9P21.3) CNV DEL PEAK 12(9P21.3) WILD-TYPE 
                           24                            27 
[1] "Del Peak 13(9q34.3)"
[1] 3
      DEL PEAK 13(9Q34.3) CNV DEL PEAK 13(9Q34.3) WILD-TYPE 
                           15                            36 
      DEL PEAK 13(9Q34.3) CNV DEL PEAK 13(9Q34.3) WILD-TYPE 
                           15                            36 
[1] "Del Peak 14(10p15.3)"
[1] 3
      DEL PEAK 14(10P15.3) CNV DEL PEAK 14(10P15.3) WILD-TYPE 
                            23                             28 
      DEL PEAK 14(10P15.3) CNV DEL PEAK 14(10P15.3) WILD-TYPE 
                            23                             28 
[1] "Del Peak 15(11p15.5)"
[1] 3
      DEL PEAK 15(11P15.5) CNV DEL PEAK 15(11P15.5) WILD-TYPE 
                            23                             28 
      DEL PEAK 15(11P15.5) CNV DEL PEAK 15(11P15.5) WILD-TYPE 
                            23                             28 
[1] "Del Peak 16(11q22.3)"
[1] 3
      DEL PEAK 16(11Q22.3) CNV DEL PEAK 16(11Q22.3) WILD-TYPE 
                            21                             30 
      DEL PEAK 16(11Q22.3) CNV DEL PEAK 16(11Q22.3) WILD-TYPE 
                            21                             30 
[1] "Del Peak 17(11q24.3)"
[1] 3
      DEL PEAK 17(11Q24.3) CNV DEL PEAK 17(11Q24.3) WILD-TYPE 
                            23                             28 
      DEL PEAK 17(11Q24.3) CNV DEL PEAK 17(11Q24.3) WILD-TYPE 
                            23                             28 
[1] "Del Peak 18(12p12.3)"
[1] 3
      DEL PEAK 18(12P12.3) CNV DEL PEAK 18(12P12.3) WILD-TYPE 
                            13                             38 
      DEL PEAK 18(12P12.3) CNV DEL PEAK 18(12P12.3) WILD-TYPE 
                            13                             38 
[1] "Del Peak 19(13q14.2)"
[1] 3
      DEL PEAK 19(13Q14.2) CNV DEL PEAK 19(13Q14.2) WILD-TYPE 
                            37                             14 
      DEL PEAK 19(13Q14.2) CNV DEL PEAK 19(13Q14.2) WILD-TYPE 
                            37                             14 
[1] "Del Peak 20(14q24.1)"
[1] 3
      DEL PEAK 20(14Q24.1) CNV DEL PEAK 20(14Q24.1) WILD-TYPE 
                            25                             26 
      DEL PEAK 20(14Q24.1) CNV DEL PEAK 20(14Q24.1) WILD-TYPE 
                            25                             26 
[1] "Del Peak 21(17p13.1)"
[1] 3
      DEL PEAK 21(17P13.1) CNV DEL PEAK 21(17P13.1) WILD-TYPE 
                            15                             36 
      DEL PEAK 21(17P13.1) CNV DEL PEAK 21(17P13.1) WILD-TYPE 
                            15                             36 
[1] "Del Peak 22(17q25.3)"
[1] 3
      DEL PEAK 22(17Q25.3) CNV DEL PEAK 22(17Q25.3) WILD-TYPE 
                            14                             37 
      DEL PEAK 22(17Q25.3) CNV DEL PEAK 22(17Q25.3) WILD-TYPE 
                            14                             37 
[1] "Del Peak 23(19p13.3)"
[1] 3
      DEL PEAK 23(19P13.3) CNV DEL PEAK 23(19P13.3) WILD-TYPE 
                            15                             36 
      DEL PEAK 23(19P13.3) CNV DEL PEAK 23(19P13.3) WILD-TYPE 
                            15                             36 
[1] "Del Peak 24(19q13.33)"
[1] 3
      DEL PEAK 24(19Q13.33) CNV DEL PEAK 24(19Q13.33) WILD-TYPE 
                             17                              34 
      DEL PEAK 24(19Q13.33) CNV DEL PEAK 24(19Q13.33) WILD-TYPE 
                             17                              34 
[1] "Del Peak 25(21q22.3)"
[1] 3
      DEL PEAK 25(21Q22.3) CNV DEL PEAK 25(21Q22.3) WILD-TYPE 
                            20                             31 
      DEL PEAK 25(21Q22.3) CNV DEL PEAK 25(21Q22.3) WILD-TYPE 
                            20                             31 
[1] "Del Peak 26(Xq21.1)"
[1] 3
      DEL PEAK 26(XQ21.1) CNV DEL PEAK 26(XQ21.1) WILD-TYPE 
                           26                            25 
      DEL PEAK 26(XQ21.1) CNV DEL PEAK 26(XQ21.1) WILD-TYPE 
                           26                            25 
[1] "Del Peak 27(Xq28)"
[1] 3
      DEL PEAK 27(XQ28) CNV DEL PEAK 27(XQ28) WILD-TYPE 
                         25                          26 
      DEL PEAK 27(XQ28) CNV DEL PEAK 27(XQ28) WILD-TYPE 
                         25                          26 
[1] "data2feature, selection=ALL"
[1] "CN_CNMF"              "METHLYATION_CNMF"     "MIRSEQ_CNMF"         
[4] "MIRSEQ_CHIERARCHICAL"

Input Data has 4 rows and 51 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MIRSEQ_CNMF':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "CN_CNMF"              "METHLYATION_CNMF"     "MIRSEQ_CNMF"         
[4] "MIRSEQ_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 51 columns, 0 survival variables, and 4 non-survival variables.
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=2, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = Amp Peak  1(1p32.1)
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P32.1) CNV AMP PEAK  1(1P32.1) WILD-TYPE
  CLUS_1                       6                             7
  CLUS_2                       2                            14
  CLUS_3                       7                            15
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P32.1) CNV AMP PEAK  1(1P32.1) WILD-TYPE
  CLUS_1                       4                            14
  CLUS_2                       7                             8
  CLUS_3                       4                            14
D1V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1P32.1) CNV          7    2
  AMP PEAK  1(1P32.1) WILD-TYPE    9   11
        clus
vv       AMP PEAK  1(1P32.1) CNV AMP PEAK  1(1P32.1) WILD-TYPE
  CLUS_1                       7                             9
  CLUS_2                       2                            11
D1V4, multiclass
        clus
vv       AMP PEAK  1(1P32.1) CNV AMP PEAK  1(1P32.1) WILD-TYPE
  CLUS_1                       0                             1
  CLUS_2                       2                            10
  CLUS_3                       7                             9

Clustering(2) Variable = Amp Peak  2(1q24.3)
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q24.3) CNV AMP PEAK  2(1Q24.3) WILD-TYPE
  CLUS_1                       5                             8
  CLUS_2                       9                             7
  CLUS_3                       8                            14
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q24.3) CNV AMP PEAK  2(1Q24.3) WILD-TYPE
  CLUS_1                       6                            12
  CLUS_2                       6                             9
  CLUS_3                      10                             8
D2V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(1Q24.3) CNV          6    4
  AMP PEAK  2(1Q24.3) WILD-TYPE   10    9
        clus
vv       AMP PEAK  2(1Q24.3) CNV AMP PEAK  2(1Q24.3) WILD-TYPE
  CLUS_1                       6                            10
  CLUS_2                       4                             9
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q24.3) CNV AMP PEAK  2(1Q24.3) WILD-TYPE
  CLUS_1                       0                             1
  CLUS_2                       4                             8
  CLUS_3                       6                            10

Clustering(3) Variable = Amp Peak  3(4p15.2)
D3V1, multiclass
        clus
vv       AMP PEAK  3(4P15.2) CNV AMP PEAK  3(4P15.2) WILD-TYPE
  CLUS_1                       5                             8
  CLUS_2                       7                             9
  CLUS_3                       4                            18
D3V2, multiclass
        clus
vv       AMP PEAK  3(4P15.2) CNV AMP PEAK  3(4P15.2) WILD-TYPE
  CLUS_1                       7                            11
  CLUS_2                       7                             8
  CLUS_3                       2                            16
D3V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(4P15.2) CNV          5    3
  AMP PEAK  3(4P15.2) WILD-TYPE   11   10
        clus
vv       AMP PEAK  3(4P15.2) CNV AMP PEAK  3(4P15.2) WILD-TYPE
  CLUS_1                       5                            11
  CLUS_2                       3                            10
D3V4, multiclass
        clus
vv       AMP PEAK  3(4P15.2) CNV AMP PEAK  3(4P15.2) WILD-TYPE
  CLUS_1                       0                             1
  CLUS_2                       3                             9
  CLUS_3                       5                            11

Clustering(4) Variable = Amp Peak  4(5p14.2)
D4V1, multiclass
        clus
vv       AMP PEAK  4(5P14.2) CNV AMP PEAK  4(5P14.2) WILD-TYPE
  CLUS_1                       4                             9
  CLUS_2                       8                             8
  CLUS_3                       9                            13
D4V2, multiclass
        clus
vv       AMP PEAK  4(5P14.2) CNV AMP PEAK  4(5P14.2) WILD-TYPE
  CLUS_1                      10                             8
  CLUS_2                       5                            10
  CLUS_3                       6                            12
D4V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(5P14.2) CNV          5    3
  AMP PEAK  4(5P14.2) WILD-TYPE   11   10
        clus
vv       AMP PEAK  4(5P14.2) CNV AMP PEAK  4(5P14.2) WILD-TYPE
  CLUS_1                       5                            11
  CLUS_2                       3                            10
D4V4, multiclass
        clus
vv       AMP PEAK  4(5P14.2) CNV AMP PEAK  4(5P14.2) WILD-TYPE
  CLUS_1                       0                             1
  CLUS_2                       3                             9
  CLUS_3                       5                            11

Clustering(5) Variable = Amp Peak  5(6p21.1)
D5V1, multiclass
        clus
vv       AMP PEAK  5(6P21.1) CNV AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                       3                            10
  CLUS_2                       5                            11
  CLUS_3                       4                            18
D5V2, multiclass
        clus
vv       AMP PEAK  5(6P21.1) CNV AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                       8                            10
  CLUS_2                       4                            11
  CLUS_3                       0                            18
D5V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  5(6P21.1) CNV          5    2
  AMP PEAK  5(6P21.1) WILD-TYPE   11   11
        clus
vv       AMP PEAK  5(6P21.1) CNV AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                       5                            11
  CLUS_2                       2                            11
D5V4, multiclass
        clus
vv       AMP PEAK  5(6P21.1) CNV AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                       0                             1
  CLUS_2                       2                            10
  CLUS_3                       5                            11

Clustering(6) Variable = Amp Peak  6(6q25.1)
D6V1, multiclass
        clus
vv       AMP PEAK  6(6Q25.1) CNV AMP PEAK  6(6Q25.1) WILD-TYPE
  CLUS_1                       7                             6
  CLUS_2                       4                            12
  CLUS_3                       3                            19
D6V2, multiclass
        clus
vv       AMP PEAK  6(6Q25.1) CNV AMP PEAK  6(6Q25.1) WILD-TYPE
  CLUS_1                      10                             8
  CLUS_2                       3                            12
  CLUS_3                       1                            17
D6V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  6(6Q25.1) CNV          7    2
  AMP PEAK  6(6Q25.1) WILD-TYPE    9   11
        clus
vv       AMP PEAK  6(6Q25.1) CNV AMP PEAK  6(6Q25.1) WILD-TYPE
  CLUS_1                       7                             9
  CLUS_2                       2                            11
D6V4, multiclass
        clus
vv       AMP PEAK  6(6Q25.1) CNV AMP PEAK  6(6Q25.1) WILD-TYPE
  CLUS_1                       0                             1
  CLUS_2                       2                            10
  CLUS_3                       7                             9

Clustering(7) Variable = Amp Peak  7(7p15.3)
D7V1, multiclass
        clus
vv       AMP PEAK  7(7P15.3) CNV AMP PEAK  7(7P15.3) WILD-TYPE
  CLUS_1                       6                             7
  CLUS_2                      11                             5
  CLUS_3                       2                            20
D7V2, multiclass
        clus
vv       AMP PEAK  7(7P15.3) CNV AMP PEAK  7(7P15.3) WILD-TYPE
  CLUS_1                       9                             9
  CLUS_2                       8                             7
  CLUS_3                       2                            16
D7V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  7(7P15.3) CNV          8    2
  AMP PEAK  7(7P15.3) WILD-TYPE    8   11
        clus
vv       AMP PEAK  7(7P15.3) CNV AMP PEAK  7(7P15.3) WILD-TYPE
  CLUS_1                       8                             8
  CLUS_2                       2                            11
D7V4, multiclass
        clus
vv       AMP PEAK  7(7P15.3) CNV AMP PEAK  7(7P15.3) WILD-TYPE
  CLUS_1                       0                             1
  CLUS_2                       2                            10
  CLUS_3                       8                             8

Clustering(8) Variable = Amp Peak  8(11q22.2)
D8V1, multiclass
        clus
vv       AMP PEAK  8(11Q22.2) CNV AMP PEAK  8(11Q22.2) WILD-TYPE
  CLUS_1                        3                             10
  CLUS_2                        5                             11
  CLUS_3                        4                             18
D8V2, multiclass
        clus
vv       AMP PEAK  8(11Q22.2) CNV AMP PEAK  8(11Q22.2) WILD-TYPE
  CLUS_1                        7                             11
  CLUS_2                        3                             12
  CLUS_3                        2                             16
D8V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  8(11Q22.2) CNV          6    0
  AMP PEAK  8(11Q22.2) WILD-TYPE   10   13
        clus
vv       AMP PEAK  8(11Q22.2) CNV AMP PEAK  8(11Q22.2) WILD-TYPE
  CLUS_1                        6                             10
  CLUS_2                        0                             13
D8V4, multiclass
        clus
vv       AMP PEAK  8(11Q22.2) CNV AMP PEAK  8(11Q22.2) WILD-TYPE
  CLUS_1                        0                              1
  CLUS_2                        0                             12
  CLUS_3                        6                             10

Clustering(9) Variable = Amp Peak  9(12p13.32)
D9V1, multiclass
        clus
vv       AMP PEAK  9(12P13.32) CNV AMP PEAK  9(12P13.32) WILD-TYPE
  CLUS_1                         5                               8
  CLUS_2                         7                               9
  CLUS_3                         3                              19
D9V2, multiclass
        clus
vv       AMP PEAK  9(12P13.32) CNV AMP PEAK  9(12P13.32) WILD-TYPE
  CLUS_1                         7                              11
  CLUS_2                         5                              10
  CLUS_3                         3                              15
D9V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK  9(12P13.32) CNV          6    1
  AMP PEAK  9(12P13.32) WILD-TYPE   10   12
        clus
vv       AMP PEAK  9(12P13.32) CNV AMP PEAK  9(12P13.32) WILD-TYPE
  CLUS_1                         6                              10
  CLUS_2                         1                              12
D9V4, multiclass
        clus
vv       AMP PEAK  9(12P13.32) CNV AMP PEAK  9(12P13.32) WILD-TYPE
  CLUS_1                         0                               1
  CLUS_2                         1                              11
  CLUS_3                         6                              10

Clustering(10) Variable = Amp Peak 10(12q15)
D10V1, multiclass
        clus
vv       AMP PEAK 10(12Q15) CNV AMP PEAK 10(12Q15) WILD-TYPE
  CLUS_1                     13                            0
  CLUS_2                      7                            9
  CLUS_3                      6                           16
D10V2, multiclass
        clus
vv       AMP PEAK 10(12Q15) CNV AMP PEAK 10(12Q15) WILD-TYPE
  CLUS_1                     14                            4
  CLUS_2                     12                            3
  CLUS_3                      0                           18
D10V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 10(12Q15) CNV         14    1
  AMP PEAK 10(12Q15) WILD-TYPE    2   12
        clus
vv       AMP PEAK 10(12Q15) CNV AMP PEAK 10(12Q15) WILD-TYPE
  CLUS_1                     14                            2
  CLUS_2                      1                           12
D10V4, multiclass
        clus
vv       AMP PEAK 10(12Q15) CNV AMP PEAK 10(12Q15) WILD-TYPE
  CLUS_1                      0                            1
  CLUS_2                      1                           11
  CLUS_3                     14                            2

Clustering(11) Variable = Amp Peak 11(17p12)
D11V1, multiclass
        clus
vv       AMP PEAK 11(17P12) CNV AMP PEAK 11(17P12) WILD-TYPE
  CLUS_1                      2                           11
  CLUS_2                     10                            6
  CLUS_3                      6                           16
D11V2, multiclass
        clus
vv       AMP PEAK 11(17P12) CNV AMP PEAK 11(17P12) WILD-TYPE
  CLUS_1                      5                           13
  CLUS_2                      6                            9
  CLUS_3                      7                           11
D11V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 11(17P12) CNV          2    5
  AMP PEAK 11(17P12) WILD-TYPE   14    8
        clus
vv       AMP PEAK 11(17P12) CNV AMP PEAK 11(17P12) WILD-TYPE
  CLUS_1                      2                           14
  CLUS_2                      5                            8
D11V4, multiclass
        clus
vv       AMP PEAK 11(17P12) CNV AMP PEAK 11(17P12) WILD-TYPE
  CLUS_1                      1                            0
  CLUS_2                      4                            8
  CLUS_3                      2                           14

Clustering(12) Variable = Amp Peak 12(19p13.2)
D12V1, multiclass
        clus
vv       AMP PEAK 12(19P13.2) CNV AMP PEAK 12(19P13.2) WILD-TYPE
  CLUS_1                        6                              7
  CLUS_2                       11                              5
  CLUS_3                        4                             18
D12V2, multiclass
        clus
vv       AMP PEAK 12(19P13.2) CNV AMP PEAK 12(19P13.2) WILD-TYPE
  CLUS_1                        8                             10
  CLUS_2                        7                              8
  CLUS_3                        6                             12
D12V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(19P13.2) CNV          5    2
  AMP PEAK 12(19P13.2) WILD-TYPE   11   11
        clus
vv       AMP PEAK 12(19P13.2) CNV AMP PEAK 12(19P13.2) WILD-TYPE
  CLUS_1                        5                             11
  CLUS_2                        2                             11
D12V4, multiclass
        clus
vv       AMP PEAK 12(19P13.2) CNV AMP PEAK 12(19P13.2) WILD-TYPE
  CLUS_1                        1                              0
  CLUS_2                        1                             11
  CLUS_3                        5                             11

Clustering(13) Variable = Amp Peak 13(Xq21.1)
D13V1, multiclass
        clus
vv       AMP PEAK 13(XQ21.1) CNV AMP PEAK 13(XQ21.1) WILD-TYPE
  CLUS_1                       3                            10
  CLUS_2                       5                            11
  CLUS_3                       2                            20
D13V2, multiclass
        clus
vv       AMP PEAK 13(XQ21.1) CNV AMP PEAK 13(XQ21.1) WILD-TYPE
  CLUS_1                       2                            16
  CLUS_2                       6                             9
  CLUS_3                       2                            16
D13V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 13(XQ21.1) CNV          2    1
  AMP PEAK 13(XQ21.1) WILD-TYPE   14   12
        clus
vv       AMP PEAK 13(XQ21.1) CNV AMP PEAK 13(XQ21.1) WILD-TYPE
  CLUS_1                       2                            14
  CLUS_2                       1                            12
D13V4, multiclass
        clus
vv       AMP PEAK 13(XQ21.1) CNV AMP PEAK 13(XQ21.1) WILD-TYPE
  CLUS_1                       0                             1
  CLUS_2                       1                            11
  CLUS_3                       2                            14

Clustering(14) Variable = Del Peak  1(1p36.32)
D14V1, multiclass
        clus
vv       DEL PEAK  1(1P36.32) CNV DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                        3                             10
  CLUS_2                        7                              9
  CLUS_3                        8                             14
D14V2, multiclass
        clus
vv       DEL PEAK  1(1P36.32) CNV DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                        3                             15
  CLUS_2                        5                             10
  CLUS_3                       10                              8
D14V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.32) CNV          3    6
  DEL PEAK  1(1P36.32) WILD-TYPE   13    7
        clus
vv       DEL PEAK  1(1P36.32) CNV DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                        3                             13
  CLUS_2                        6                              7
D14V4, multiclass
        clus
vv       DEL PEAK  1(1P36.32) CNV DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                        1                              0
  CLUS_2                        5                              7
  CLUS_3                        3                             13

Clustering(15) Variable = Del Peak  2(1p32.3)
D15V1, multiclass
        clus
vv       DEL PEAK  2(1P32.3) CNV DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                       0                            13
  CLUS_2                       9                             7
  CLUS_3                       4                            18
D15V2, multiclass
        clus
vv       DEL PEAK  2(1P32.3) CNV DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                       3                            15
  CLUS_2                       4                            11
  CLUS_3                       6                            12
D15V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P32.3) CNV          1    5
  DEL PEAK  2(1P32.3) WILD-TYPE   15    8
        clus
vv       DEL PEAK  2(1P32.3) CNV DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                       1                            15
  CLUS_2                       5                             8
D15V4, multiclass
        clus
vv       DEL PEAK  2(1P32.3) CNV DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                       1                             0
  CLUS_2                       4                             8
  CLUS_3                       1                            15

Clustering(16) Variable = Del Peak  3(1q44)
D16V1, multiclass
        clus
vv       DEL PEAK  3(1Q44) CNV DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                     7                           6
  CLUS_2                     8                           8
  CLUS_3                     3                          19
D16V2, multiclass
        clus
vv       DEL PEAK  3(1Q44) CNV DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                     8                          10
  CLUS_2                     9                           6
  CLUS_3                     1                          17
D16V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  3(1Q44) CNV          5    3
  DEL PEAK  3(1Q44) WILD-TYPE   11   10
        clus
vv       DEL PEAK  3(1Q44) CNV DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                     5                          11
  CLUS_2                     3                          10
D16V4, multiclass
        clus
vv       DEL PEAK  3(1Q44) CNV DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                     0                           1
  CLUS_2                     3                           9
  CLUS_3                     5                          11

Clustering(17) Variable = Del Peak  4(2q37.3)
D17V1, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) CNV DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                       6                             7
  CLUS_2                      11                             5
  CLUS_3                       7                            15
D17V2, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) CNV DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                       7                            11
  CLUS_2                      10                             5
  CLUS_3                       7                            11
D17V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(2Q37.3) CNV          6    8
  DEL PEAK  4(2Q37.3) WILD-TYPE   10    5
        clus
vv       DEL PEAK  4(2Q37.3) CNV DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                       6                            10
  CLUS_2                       8                             5
D17V4, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) CNV DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                       1                             0
  CLUS_2                       7                             5
  CLUS_3                       6                            10

Clustering(18) Variable = Del Peak  5(3p21.31)
D18V1, multiclass
        clus
vv       DEL PEAK  5(3P21.31) CNV DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                        4                              9
  CLUS_2                       10                              6
  CLUS_3                        1                             21
D18V2, multiclass
        clus
vv       DEL PEAK  5(3P21.31) CNV DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                        7                             11
  CLUS_2                        7                              8
  CLUS_3                        1                             17
D18V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  5(3P21.31) CNV          6    2
  DEL PEAK  5(3P21.31) WILD-TYPE   10   11
        clus
vv       DEL PEAK  5(3P21.31) CNV DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                        6                             10
  CLUS_2                        2                             11
D18V4, multiclass
        clus
vv       DEL PEAK  5(3P21.31) CNV DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                        1                              0
  CLUS_2                        1                             11
  CLUS_3                        6                             10

Clustering(19) Variable = Del Peak  6(3q25.1)
D19V1, multiclass
        clus
vv       DEL PEAK  6(3Q25.1) CNV DEL PEAK  6(3Q25.1) WILD-TYPE
  CLUS_1                       5                             8
  CLUS_2                       9                             7
  CLUS_3                       3                            19
D19V2, multiclass
        clus
vv       DEL PEAK  6(3Q25.1) CNV DEL PEAK  6(3Q25.1) WILD-TYPE
  CLUS_1                       6                            12
  CLUS_2                       8                             7
  CLUS_3                       3                            15
D19V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(3Q25.1) CNV          7    2
  DEL PEAK  6(3Q25.1) WILD-TYPE    9   11
        clus
vv       DEL PEAK  6(3Q25.1) CNV DEL PEAK  6(3Q25.1) WILD-TYPE
  CLUS_1                       7                             9
  CLUS_2                       2                            11
D19V4, multiclass
        clus
vv       DEL PEAK  6(3Q25.1) CNV DEL PEAK  6(3Q25.1) WILD-TYPE
  CLUS_1                       1                             0
  CLUS_2                       1                            11
  CLUS_3                       7                             9

Clustering(20) Variable = Del Peak  7(4q35.1)
D20V1, multiclass
        clus
vv       DEL PEAK  7(4Q35.1) CNV DEL PEAK  7(4Q35.1) WILD-TYPE
  CLUS_1                       3                            10
  CLUS_2                      10                             6
  CLUS_3                      12                            10
D20V2, multiclass
        clus
vv       DEL PEAK  7(4Q35.1) CNV DEL PEAK  7(4Q35.1) WILD-TYPE
  CLUS_1                       7                            11
  CLUS_2                      10                             5
  CLUS_3                       8                            10
D20V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(4Q35.1) CNV          9    4
  DEL PEAK  7(4Q35.1) WILD-TYPE    7    9
        clus
vv       DEL PEAK  7(4Q35.1) CNV DEL PEAK  7(4Q35.1) WILD-TYPE
  CLUS_1                       9                             7
  CLUS_2                       4                             9
D20V4, multiclass
        clus
vv       DEL PEAK  7(4Q35.1) CNV DEL PEAK  7(4Q35.1) WILD-TYPE
  CLUS_1                       0                             1
  CLUS_2                       4                             8
  CLUS_3                       9                             7

Clustering(21) Variable = Del Peak  8(5q23.3)
D21V1, multiclass
        clus
vv       DEL PEAK  8(5Q23.3) CNV DEL PEAK  8(5Q23.3) WILD-TYPE
  CLUS_1                       4                             9
  CLUS_2                       2                            14
  CLUS_3                       4                            18
D21V2, multiclass
        clus
vv       DEL PEAK  8(5Q23.3) CNV DEL PEAK  8(5Q23.3) WILD-TYPE
  CLUS_1                       3                            15
  CLUS_2                       3                            12
  CLUS_3                       4                            14
D21V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(5Q23.3) CNV          3    3
  DEL PEAK  8(5Q23.3) WILD-TYPE   13   10
        clus
vv       DEL PEAK  8(5Q23.3) CNV DEL PEAK  8(5Q23.3) WILD-TYPE
  CLUS_1                       3                            13
  CLUS_2                       3                            10
D21V4, multiclass
        clus
vv       DEL PEAK  8(5Q23.3) CNV DEL PEAK  8(5Q23.3) WILD-TYPE
  CLUS_1                       0                             1
  CLUS_2                       3                             9
  CLUS_3                       3                            13

Clustering(22) Variable = Del Peak  9(6q15)
D22V1, multiclass
        clus
vv       DEL PEAK  9(6Q15) CNV DEL PEAK  9(6Q15) WILD-TYPE
  CLUS_1                     3                          10
  CLUS_2                     6                          10
  CLUS_3                     5                          17
D22V2, multiclass
        clus
vv       DEL PEAK  9(6Q15) CNV DEL PEAK  9(6Q15) WILD-TYPE
  CLUS_1                     3                          15
  CLUS_2                     5                          10
  CLUS_3                     6                          12
D22V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  9(6Q15) CNV          4    2
  DEL PEAK  9(6Q15) WILD-TYPE   12   11
        clus
vv       DEL PEAK  9(6Q15) CNV DEL PEAK  9(6Q15) WILD-TYPE
  CLUS_1                     4                          12
  CLUS_2                     2                          11
D22V4, multiclass
        clus
vv       DEL PEAK  9(6Q15) CNV DEL PEAK  9(6Q15) WILD-TYPE
  CLUS_1                     1                           0
  CLUS_2                     1                          11
  CLUS_3                     4                          12

Clustering(23) Variable = Del Peak 10(7q36.3)
D23V1, multiclass
        clus
vv       DEL PEAK 10(7Q36.3) CNV DEL PEAK 10(7Q36.3) WILD-TYPE
  CLUS_1                       4                             9
  CLUS_2                       6                            10
  CLUS_3                       4                            18
D23V2, multiclass
        clus
vv       DEL PEAK 10(7Q36.3) CNV DEL PEAK 10(7Q36.3) WILD-TYPE
  CLUS_1                       3                            15
  CLUS_2                       5                            10
  CLUS_3                       6                            12
D23V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(7Q36.3) CNV          4    2
  DEL PEAK 10(7Q36.3) WILD-TYPE   12   11
        clus
vv       DEL PEAK 10(7Q36.3) CNV DEL PEAK 10(7Q36.3) WILD-TYPE
  CLUS_1                       4                            12
  CLUS_2                       2                            11
D23V4, multiclass
        clus
vv       DEL PEAK 10(7Q36.3) CNV DEL PEAK 10(7Q36.3) WILD-TYPE
  CLUS_1                       0                             1
  CLUS_2                       2                            10
  CLUS_3                       4                            12

Clustering(24) Variable = Del Peak 11(8p23.2)
D24V1, multiclass
        clus
vv       DEL PEAK 11(8P23.2) CNV DEL PEAK 11(8P23.2) WILD-TYPE
  CLUS_1                       6                             7
  CLUS_2                       7                             9
  CLUS_3                       3                            19
D24V2, multiclass
        clus
vv       DEL PEAK 11(8P23.2) CNV DEL PEAK 11(8P23.2) WILD-TYPE
  CLUS_1                       8                            10
  CLUS_2                       6                             9
  CLUS_3                       2                            16
D24V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(8P23.2) CNV          8    3
  DEL PEAK 11(8P23.2) WILD-TYPE    8   10
        clus
vv       DEL PEAK 11(8P23.2) CNV DEL PEAK 11(8P23.2) WILD-TYPE
  CLUS_1                       8                             8
  CLUS_2                       3                            10
D24V4, multiclass
        clus
vv       DEL PEAK 11(8P23.2) CNV DEL PEAK 11(8P23.2) WILD-TYPE
  CLUS_1                       1                             0
  CLUS_2                       2                            10
  CLUS_3                       8                             8

Clustering(25) Variable = Del Peak 12(9p21.3)
D25V1, multiclass
        clus
vv       DEL PEAK 12(9P21.3) CNV DEL PEAK 12(9P21.3) WILD-TYPE
  CLUS_1                       7                             6
  CLUS_2                      13                             3
  CLUS_3                       4                            18
D25V2, multiclass
        clus
vv       DEL PEAK 12(9P21.3) CNV DEL PEAK 12(9P21.3) WILD-TYPE
  CLUS_1                      11                             7
  CLUS_2                       9                             6
  CLUS_3                       4                            14
D25V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(9P21.3) CNV          7    4
  DEL PEAK 12(9P21.3) WILD-TYPE    9    9
        clus
vv       DEL PEAK 12(9P21.3) CNV DEL PEAK 12(9P21.3) WILD-TYPE
  CLUS_1                       7                             9
  CLUS_2                       4                             9
D25V4, multiclass
        clus
vv       DEL PEAK 12(9P21.3) CNV DEL PEAK 12(9P21.3) WILD-TYPE
  CLUS_1                       1                             0
  CLUS_2                       3                             9
  CLUS_3                       7                             9

Clustering(26) Variable = Del Peak 13(9q34.3)
D26V1, multiclass
        clus
vv       DEL PEAK 13(9Q34.3) CNV DEL PEAK 13(9Q34.3) WILD-TYPE
  CLUS_1                       3                            10
  CLUS_2                       5                            11
  CLUS_3                       7                            15
D26V2, multiclass
        clus
vv       DEL PEAK 13(9Q34.3) CNV DEL PEAK 13(9Q34.3) WILD-TYPE
  CLUS_1                       2                            16
  CLUS_2                       6                             9
  CLUS_3                       7                            11
D26V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 13(9Q34.3) CNV          3    3
  DEL PEAK 13(9Q34.3) WILD-TYPE   13   10
        clus
vv       DEL PEAK 13(9Q34.3) CNV DEL PEAK 13(9Q34.3) WILD-TYPE
  CLUS_1                       3                            13
  CLUS_2                       3                            10
D26V4, multiclass
        clus
vv       DEL PEAK 13(9Q34.3) CNV DEL PEAK 13(9Q34.3) WILD-TYPE
  CLUS_1                       0                             1
  CLUS_2                       3                             9
  CLUS_3                       3                            13

Clustering(27) Variable = Del Peak 14(10p15.3)
D27V1, multiclass
        clus
vv       DEL PEAK 14(10P15.3) CNV DEL PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                        5                              8
  CLUS_2                       10                              6
  CLUS_3                        8                             14
D27V2, multiclass
        clus
vv       DEL PEAK 14(10P15.3) CNV DEL PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                        7                             11
  CLUS_2                        8                              7
  CLUS_3                        8                             10
D27V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 14(10P15.3) CNV          5    6
  DEL PEAK 14(10P15.3) WILD-TYPE   11    7
        clus
vv       DEL PEAK 14(10P15.3) CNV DEL PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                        5                             11
  CLUS_2                        6                              7
D27V4, multiclass
        clus
vv       DEL PEAK 14(10P15.3) CNV DEL PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                        1                              0
  CLUS_2                        5                              7
  CLUS_3                        5                             11

Clustering(28) Variable = Del Peak 15(11p15.5)
D28V1, multiclass
        clus
vv       DEL PEAK 15(11P15.5) CNV DEL PEAK 15(11P15.5) WILD-TYPE
  CLUS_1                        7                              6
  CLUS_2                        8                              8
  CLUS_3                        8                             14
D28V2, multiclass
        clus
vv       DEL PEAK 15(11P15.5) CNV DEL PEAK 15(11P15.5) WILD-TYPE
  CLUS_1                        8                             10
  CLUS_2                        7                              8
  CLUS_3                        8                             10
D28V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(11P15.5) CNV          7    5
  DEL PEAK 15(11P15.5) WILD-TYPE    9    8
        clus
vv       DEL PEAK 15(11P15.5) CNV DEL PEAK 15(11P15.5) WILD-TYPE
  CLUS_1                        7                              9
  CLUS_2                        5                              8
D28V4, multiclass
        clus
vv       DEL PEAK 15(11P15.5) CNV DEL PEAK 15(11P15.5) WILD-TYPE
  CLUS_1                        1                              0
  CLUS_2                        4                              8
  CLUS_3                        7                              9

Clustering(29) Variable = Del Peak 16(11q22.3)
D29V1, multiclass
        clus
vv       DEL PEAK 16(11Q22.3) CNV DEL PEAK 16(11Q22.3) WILD-TYPE
  CLUS_1                       10                              3
  CLUS_2                        6                             10
  CLUS_3                        5                             17
D29V2, multiclass
        clus
vv       DEL PEAK 16(11Q22.3) CNV DEL PEAK 16(11Q22.3) WILD-TYPE
  CLUS_1                        6                             12
  CLUS_2                        9                              6
  CLUS_3                        6                             12
D29V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(11Q22.3) CNV          6    6
  DEL PEAK 16(11Q22.3) WILD-TYPE   10    7
        clus
vv       DEL PEAK 16(11Q22.3) CNV DEL PEAK 16(11Q22.3) WILD-TYPE
  CLUS_1                        6                             10
  CLUS_2                        6                              7
D29V4, multiclass
        clus
vv       DEL PEAK 16(11Q22.3) CNV DEL PEAK 16(11Q22.3) WILD-TYPE
  CLUS_1                        0                              1
  CLUS_2                        6                              6
  CLUS_3                        6                             10

Clustering(30) Variable = Del Peak 17(11q24.3)
D30V1, multiclass
        clus
vv       DEL PEAK 17(11Q24.3) CNV DEL PEAK 17(11Q24.3) WILD-TYPE
  CLUS_1                        8                              5
  CLUS_2                        9                              7
  CLUS_3                        6                             16
D30V2, multiclass
        clus
vv       DEL PEAK 17(11Q24.3) CNV DEL PEAK 17(11Q24.3) WILD-TYPE
  CLUS_1                        9                              9
  CLUS_2                        9                              6
  CLUS_3                        5                             13
D30V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 17(11Q24.3) CNV          6    5
  DEL PEAK 17(11Q24.3) WILD-TYPE   10    8
        clus
vv       DEL PEAK 17(11Q24.3) CNV DEL PEAK 17(11Q24.3) WILD-TYPE
  CLUS_1                        6                             10
  CLUS_2                        5                              8
D30V4, multiclass
        clus
vv       DEL PEAK 17(11Q24.3) CNV DEL PEAK 17(11Q24.3) WILD-TYPE
  CLUS_1                        0                              1
  CLUS_2                        5                              7
  CLUS_3                        6                             10

Clustering(31) Variable = Del Peak 18(12p12.3)
D31V1, multiclass
        clus
vv       DEL PEAK 18(12P12.3) CNV DEL PEAK 18(12P12.3) WILD-TYPE
  CLUS_1                        6                              7
  CLUS_2                        4                             12
  CLUS_3                        3                             19
D31V2, multiclass
        clus
vv       DEL PEAK 18(12P12.3) CNV DEL PEAK 18(12P12.3) WILD-TYPE
  CLUS_1                        6                             12
  CLUS_2                        5                             10
  CLUS_3                        2                             16
D31V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(12P12.3) CNV          6    3
  DEL PEAK 18(12P12.3) WILD-TYPE   10   10
        clus
vv       DEL PEAK 18(12P12.3) CNV DEL PEAK 18(12P12.3) WILD-TYPE
  CLUS_1                        6                             10
  CLUS_2                        3                             10
D31V4, multiclass
        clus
vv       DEL PEAK 18(12P12.3) CNV DEL PEAK 18(12P12.3) WILD-TYPE
  CLUS_1                        0                              1
  CLUS_2                        3                              9
  CLUS_3                        6                             10

Clustering(32) Variable = Del Peak 19(13q14.2)
D32V1, multiclass
        clus
vv       DEL PEAK 19(13Q14.2) CNV DEL PEAK 19(13Q14.2) WILD-TYPE
  CLUS_1                        9                              4
  CLUS_2                       12                              4
  CLUS_3                       16                              6
D32V2, multiclass
        clus
vv       DEL PEAK 19(13Q14.2) CNV DEL PEAK 19(13Q14.2) WILD-TYPE
  CLUS_1                       10                              8
  CLUS_2                       12                              3
  CLUS_3                       15                              3
D32V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(13Q14.2) CNV          9   10
  DEL PEAK 19(13Q14.2) WILD-TYPE    7    3
        clus
vv       DEL PEAK 19(13Q14.2) CNV DEL PEAK 19(13Q14.2) WILD-TYPE
  CLUS_1                        9                              7
  CLUS_2                       10                              3
D32V4, multiclass
        clus
vv       DEL PEAK 19(13Q14.2) CNV DEL PEAK 19(13Q14.2) WILD-TYPE
  CLUS_1                        1                              0
  CLUS_2                        9                              3
  CLUS_3                        9                              7

Clustering(33) Variable = Del Peak 20(14q24.1)
D33V1, multiclass
        clus
vv       DEL PEAK 20(14Q24.1) CNV DEL PEAK 20(14Q24.1) WILD-TYPE
  CLUS_1                        6                              7
  CLUS_2                       12                              4
  CLUS_3                        7                             15
D33V2, multiclass
        clus
vv       DEL PEAK 20(14Q24.1) CNV DEL PEAK 20(14Q24.1) WILD-TYPE
  CLUS_1                       10                              8
  CLUS_2                        5                             10
  CLUS_3                       10                              8
D33V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(14Q24.1) CNV          6    8
  DEL PEAK 20(14Q24.1) WILD-TYPE   10    5
        clus
vv       DEL PEAK 20(14Q24.1) CNV DEL PEAK 20(14Q24.1) WILD-TYPE
  CLUS_1                        6                             10
  CLUS_2                        8                              5
D33V4, multiclass
        clus
vv       DEL PEAK 20(14Q24.1) CNV DEL PEAK 20(14Q24.1) WILD-TYPE
  CLUS_1                        1                              0
  CLUS_2                        7                              5
  CLUS_3                        6                             10

Clustering(34) Variable = Del Peak 21(17p13.1)
D34V1, multiclass
        clus
vv       DEL PEAK 21(17P13.1) CNV DEL PEAK 21(17P13.1) WILD-TYPE
  CLUS_1                        1                             12
  CLUS_2                        3                             13
  CLUS_3                       11                             11
D34V2, multiclass
        clus
vv       DEL PEAK 21(17P13.1) CNV DEL PEAK 21(17P13.1) WILD-TYPE
  CLUS_1                        6                             12
  CLUS_2                        1                             14
  CLUS_3                        8                             10
D34V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(17P13.1) CNV          3    5
  DEL PEAK 21(17P13.1) WILD-TYPE   13    8
        clus
vv       DEL PEAK 21(17P13.1) CNV DEL PEAK 21(17P13.1) WILD-TYPE
  CLUS_1                        3                             13
  CLUS_2                        5                              8
D34V4, multiclass
        clus
vv       DEL PEAK 21(17P13.1) CNV DEL PEAK 21(17P13.1) WILD-TYPE
  CLUS_1                        0                              1
  CLUS_2                        5                              7
  CLUS_3                        3                             13

Clustering(35) Variable = Del Peak 22(17q25.3)
D35V1, multiclass
        clus
vv       DEL PEAK 22(17Q25.3) CNV DEL PEAK 22(17Q25.3) WILD-TYPE
  CLUS_1                        2                             11
  CLUS_2                        4                             12
  CLUS_3                        8                             14
D35V2, multiclass
        clus
vv       DEL PEAK 22(17Q25.3) CNV DEL PEAK 22(17Q25.3) WILD-TYPE
  CLUS_1                        5                             13
  CLUS_2                        3                             12
  CLUS_3                        6                             12
D35V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(17Q25.3) CNV          3    3
  DEL PEAK 22(17Q25.3) WILD-TYPE   13   10
        clus
vv       DEL PEAK 22(17Q25.3) CNV DEL PEAK 22(17Q25.3) WILD-TYPE
  CLUS_1                        3                             13
  CLUS_2                        3                             10
D35V4, multiclass
        clus
vv       DEL PEAK 22(17Q25.3) CNV DEL PEAK 22(17Q25.3) WILD-TYPE
  CLUS_1                        0                              1
  CLUS_2                        3                              9
  CLUS_3                        3                             13

Clustering(36) Variable = Del Peak 23(19p13.3)
D36V1, multiclass
        clus
vv       DEL PEAK 23(19P13.3) CNV DEL PEAK 23(19P13.3) WILD-TYPE
  CLUS_1                        1                             12
  CLUS_2                        6                             10
  CLUS_3                        8                             14
D36V2, multiclass
        clus
vv       DEL PEAK 23(19P13.3) CNV DEL PEAK 23(19P13.3) WILD-TYPE
  CLUS_1                        3                             15
  CLUS_2                        3                             12
  CLUS_3                        9                              9
D36V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(19P13.3) CNV          4    3
  DEL PEAK 23(19P13.3) WILD-TYPE   12   10
        clus
vv       DEL PEAK 23(19P13.3) CNV DEL PEAK 23(19P13.3) WILD-TYPE
  CLUS_1                        4                             12
  CLUS_2                        3                             10
D36V4, multiclass
        clus
vv       DEL PEAK 23(19P13.3) CNV DEL PEAK 23(19P13.3) WILD-TYPE
  CLUS_1                        0                              1
  CLUS_2                        3                              9
  CLUS_3                        4                             12

Clustering(37) Variable = Del Peak 24(19q13.33)
D37V1, multiclass
        clus
vv       DEL PEAK 24(19Q13.33) CNV DEL PEAK 24(19Q13.33) WILD-TYPE
  CLUS_1                         5                               8
  CLUS_2                         5                              11
  CLUS_3                         7                              15
D37V2, multiclass
        clus
vv       DEL PEAK 24(19Q13.33) CNV DEL PEAK 24(19Q13.33) WILD-TYPE
  CLUS_1                         3                              15
  CLUS_2                         7                               8
  CLUS_3                         7                              11
D37V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 24(19Q13.33) CNV          5    6
  DEL PEAK 24(19Q13.33) WILD-TYPE   11    7
        clus
vv       DEL PEAK 24(19Q13.33) CNV DEL PEAK 24(19Q13.33) WILD-TYPE
  CLUS_1                         5                              11
  CLUS_2                         6                               7
D37V4, multiclass
        clus
vv       DEL PEAK 24(19Q13.33) CNV DEL PEAK 24(19Q13.33) WILD-TYPE
  CLUS_1                         1                               0
  CLUS_2                         5                               7
  CLUS_3                         5                              11

Clustering(38) Variable = Del Peak 25(21q22.3)
D38V1, multiclass
        clus
vv       DEL PEAK 25(21Q22.3) CNV DEL PEAK 25(21Q22.3) WILD-TYPE
  CLUS_1                        7                              6
  CLUS_2                        7                              9
  CLUS_3                        6                             16
D38V2, multiclass
        clus
vv       DEL PEAK 25(21Q22.3) CNV DEL PEAK 25(21Q22.3) WILD-TYPE
  CLUS_1                        8                             10
  CLUS_2                        7                              8
  CLUS_3                        5                             13
D38V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(21Q22.3) CNV          7    4
  DEL PEAK 25(21Q22.3) WILD-TYPE    9    9
        clus
vv       DEL PEAK 25(21Q22.3) CNV DEL PEAK 25(21Q22.3) WILD-TYPE
  CLUS_1                        7                              9
  CLUS_2                        4                              9
D38V4, multiclass
        clus
vv       DEL PEAK 25(21Q22.3) CNV DEL PEAK 25(21Q22.3) WILD-TYPE
  CLUS_1                        0                              1
  CLUS_2                        4                              8
  CLUS_3                        7                              9

Clustering(39) Variable = Del Peak 26(Xq21.1)
D39V1, multiclass
        clus
vv       DEL PEAK 26(XQ21.1) CNV DEL PEAK 26(XQ21.1) WILD-TYPE
  CLUS_1                       8                             5
  CLUS_2                       9                             7
  CLUS_3                       9                            13
D39V2, multiclass
        clus
vv       DEL PEAK 26(XQ21.1) CNV DEL PEAK 26(XQ21.1) WILD-TYPE
  CLUS_1                       7                            11
  CLUS_2                       7                             8
  CLUS_3                      12                             6
D39V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 26(XQ21.1) CNV          7    8
  DEL PEAK 26(XQ21.1) WILD-TYPE    9    5
        clus
vv       DEL PEAK 26(XQ21.1) CNV DEL PEAK 26(XQ21.1) WILD-TYPE
  CLUS_1                       7                             9
  CLUS_2                       8                             5
D39V4, multiclass
        clus
vv       DEL PEAK 26(XQ21.1) CNV DEL PEAK 26(XQ21.1) WILD-TYPE
  CLUS_1                       1                             0
  CLUS_2                       7                             5
  CLUS_3                       7                             9

Clustering(40) Variable = Del Peak 27(Xq28)
D40V1, multiclass
        clus
vv       DEL PEAK 27(XQ28) CNV DEL PEAK 27(XQ28) WILD-TYPE
  CLUS_1                     7                           6
  CLUS_2                     9                           7
  CLUS_3                     9                          13
D40V2, multiclass
        clus
vv       DEL PEAK 27(XQ28) CNV DEL PEAK 27(XQ28) WILD-TYPE
  CLUS_1                     4                          14
  CLUS_2                    10                           5
  CLUS_3                    11                           7
D40V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 27(XQ28) CNV          5    7
  DEL PEAK 27(XQ28) WILD-TYPE   11    6
        clus
vv       DEL PEAK 27(XQ28) CNV DEL PEAK 27(XQ28) WILD-TYPE
  CLUS_1                     5                          11
  CLUS_2                     7                           6
D40V4, multiclass
        clus
vv       DEL PEAK 27(XQ28) CNV DEL PEAK 27(XQ28) WILD-TYPE
  CLUS_1                     0                           1
  CLUS_2                     7                           5
  CLUS_3                     5                          11
                    V1                     V2                     V3 
             "CN_CNMF"     "METHLYATION_CNMF"          "MIRSEQ_CNMF" 
                    V4 
"MIRSEQ_CHIERARCHICAL" 
> q(save="no")
