Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
GDAC_mergedClustering1.PredictionU133aTCGA	SKCM-TM.bestclus.txt	gdac.broadinstitute.org_SKCM-TM.RPPA_Clustering_CNMF.Level_4.2013042100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00255:23	Aggregate_Molecular_Subtype_Clusters_2013042100	SKCM-TM.mergedcluster.txt	Merged_clusteing	Level_4	txt	gdac.broadinstitute.org_SKCM-TM.Aggregate_Molecular_Subtype_Clusters.Level_4.2013042100.0.0	yes
GDAC_mergedClustering1.PredictionU133aTCGA	SKCM-TM.bestclus.txt	gdac.broadinstitute.org_SKCM-TM.RPPA_Clustering_CNMF.Level_4.2013042100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00255:23	Aggregate_Molecular_Subtype_Clusters_2013042100	report.html	report	Level_4	html	gdac.broadinstitute.org_SKCM-TM.Aggregate_Molecular_Subtype_Clusters.Level_4.2013042100.0.0	yes
GDAC_mergedClustering1.mRNAseqhc	SKCM-TM.bestclus.txt	gdac.broadinstitute.org_SKCM-TM.mRNAseq_Clustering_Consensus.Level_4.2013042100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00255:23	Aggregate_Molecular_Subtype_Clusters_2013042100	SKCM-TM.mergedcluster.txt	Merged_clusteing	Level_4	txt	gdac.broadinstitute.org_SKCM-TM.Aggregate_Molecular_Subtype_Clusters.Level_4.2013042100.0.0	yes
GDAC_mergedClustering1.mRNAseqhc	SKCM-TM.bestclus.txt	gdac.broadinstitute.org_SKCM-TM.mRNAseq_Clustering_Consensus.Level_4.2013042100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00255:23	Aggregate_Molecular_Subtype_Clusters_2013042100	report.html	report	Level_4	html	gdac.broadinstitute.org_SKCM-TM.Aggregate_Molecular_Subtype_Clusters.Level_4.2013042100.0.0	yes
GDAC_mergedClustering1.miRseqhc	SKCM-TM.bestclus.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2013042100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00255:23	Aggregate_Molecular_Subtype_Clusters_2013042100	SKCM-TM.mergedcluster.txt	Merged_clusteing	Level_4	txt	gdac.broadinstitute.org_SKCM-TM.Aggregate_Molecular_Subtype_Clusters.Level_4.2013042100.0.0	yes
GDAC_mergedClustering1.miRseqhc	SKCM-TM.bestclus.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2013042100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00255:23	Aggregate_Molecular_Subtype_Clusters_2013042100	report.html	report	Level_4	html	gdac.broadinstitute.org_SKCM-TM.Aggregate_Molecular_Subtype_Clusters.Level_4.2013042100.0.0	yes
GDAC_mergedClustering1.miRseqcnmf	SKCM-TM.bestclus.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_CNMF.Level_4.2013042100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00255:23	Aggregate_Molecular_Subtype_Clusters_2013042100	SKCM-TM.mergedcluster.txt	Merged_clusteing	Level_4	txt	gdac.broadinstitute.org_SKCM-TM.Aggregate_Molecular_Subtype_Clusters.Level_4.2013042100.0.0	yes
GDAC_mergedClustering1.miRseqcnmf	SKCM-TM.bestclus.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_CNMF.Level_4.2013042100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00255:23	Aggregate_Molecular_Subtype_Clusters_2013042100	report.html	report	Level_4	html	gdac.broadinstitute.org_SKCM-TM.Aggregate_Molecular_Subtype_Clusters.Level_4.2013042100.0.0	yes
GDAC_mergedClustering1.PredictionU133aPhilips	SKCM-TM.bestclus.txt	gdac.broadinstitute.org_SKCM-TM.RPPA_Clustering_Consensus.Level_4.2013042100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00255:23	Aggregate_Molecular_Subtype_Clusters_2013042100	SKCM-TM.mergedcluster.txt	Merged_clusteing	Level_4	txt	gdac.broadinstitute.org_SKCM-TM.Aggregate_Molecular_Subtype_Clusters.Level_4.2013042100.0.0	yes
GDAC_mergedClustering1.PredictionU133aPhilips	SKCM-TM.bestclus.txt	gdac.broadinstitute.org_SKCM-TM.RPPA_Clustering_Consensus.Level_4.2013042100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00255:23	Aggregate_Molecular_Subtype_Clusters_2013042100	report.html	report	Level_4	html	gdac.broadinstitute.org_SKCM-TM.Aggregate_Molecular_Subtype_Clusters.Level_4.2013042100.0.0	yes
GDAC_mergedClustering1.mRNAseqcnmf	SKCM-TM.bestclus.txt	gdac.broadinstitute.org_SKCM-TM.mRNAseq_Clustering_CNMF.Level_4.2013042100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00255:23	Aggregate_Molecular_Subtype_Clusters_2013042100	SKCM-TM.mergedcluster.txt	Merged_clusteing	Level_4	txt	gdac.broadinstitute.org_SKCM-TM.Aggregate_Molecular_Subtype_Clusters.Level_4.2013042100.0.0	yes
GDAC_mergedClustering1.mRNAseqcnmf	SKCM-TM.bestclus.txt	gdac.broadinstitute.org_SKCM-TM.mRNAseq_Clustering_CNMF.Level_4.2013042100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00255:23	Aggregate_Molecular_Subtype_Clusters_2013042100	report.html	report	Level_4	html	gdac.broadinstitute.org_SKCM-TM.Aggregate_Molecular_Subtype_Clusters.Level_4.2013042100.0.0	yes
GDAC_mergedClustering1.copynumber	SKCM-TM.bestclus.txt	gdac.broadinstitute.org_SKCM-TM.CopyNumber_Clustering_CNMF.Level_4.2013042100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00255:23	Aggregate_Molecular_Subtype_Clusters_2013042100	SKCM-TM.mergedcluster.txt	Merged_clusteing	Level_4	txt	gdac.broadinstitute.org_SKCM-TM.Aggregate_Molecular_Subtype_Clusters.Level_4.2013042100.0.0	yes
GDAC_mergedClustering1.copynumber	SKCM-TM.bestclus.txt	gdac.broadinstitute.org_SKCM-TM.CopyNumber_Clustering_CNMF.Level_4.2013042100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00255:23	Aggregate_Molecular_Subtype_Clusters_2013042100	report.html	report	Level_4	html	gdac.broadinstitute.org_SKCM-TM.Aggregate_Molecular_Subtype_Clusters.Level_4.2013042100.0.0	yes
GDAC_mergedClustering1.methlyationcnmf	SKCM-TM.bestclus.txt	gdac.broadinstitute.org_SKCM-TM.Methylation_Clustering_CNMF.Level_4.2013042100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00255:23	Aggregate_Molecular_Subtype_Clusters_2013042100	SKCM-TM.mergedcluster.txt	Merged_clusteing	Level_4	txt	gdac.broadinstitute.org_SKCM-TM.Aggregate_Molecular_Subtype_Clusters.Level_4.2013042100.0.0	yes
GDAC_mergedClustering1.methlyationcnmf	SKCM-TM.bestclus.txt	gdac.broadinstitute.org_SKCM-TM.Methylation_Clustering_CNMF.Level_4.2013042100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00255:23	Aggregate_Molecular_Subtype_Clusters_2013042100	report.html	report	Level_4	html	gdac.broadinstitute.org_SKCM-TM.Aggregate_Molecular_Subtype_Clusters.Level_4.2013042100.0.0	yes
