
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.81.4078/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.81.4078/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/396215/SKCM-TM.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/SKCM-TM/3132753/1.GDAC_clinicalDataPicker.Finished/SKCM-TM.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=180, in cluster file=225, common to both=159
[1] "Reduce the number of clustering variables from 129 to 126."
[1] 126 159
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
            25            134 
  TP53 MUTATED TP53 WILD-TYPE 
            25            134 
[1] "BRAF MUTATION ANALYSIS"
[1] 3
  BRAF MUTATED BRAF WILD-TYPE 
            80             79 
  BRAF MUTATED BRAF WILD-TYPE 
            80             79 
[1] "C15ORF23 MUTATION ANALYSIS"
[1] 3
  C15ORF23 MUTATED C15ORF23 WILD-TYPE 
                11                148 
  C15ORF23 MUTATED C15ORF23 WILD-TYPE 
                11                148 
[1] "CDKN2A MUTATION ANALYSIS"
[1] 3
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              25              134 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              25              134 
[1] "NRAS MUTATION ANALYSIS"
[1] 3
  NRAS MUTATED NRAS WILD-TYPE 
            48            111 
  NRAS MUTATED NRAS WILD-TYPE 
            48            111 
[1] "OXA1L MUTATION ANALYSIS"
[1] 3
  OXA1L MUTATED OXA1L WILD-TYPE 
              4             155 
  OXA1L MUTATED OXA1L WILD-TYPE 
              4             155 
[1] "STK19 MUTATION ANALYSIS"
[1] 3
  STK19 MUTATED STK19 WILD-TYPE 
              9             150 
  STK19 MUTATED STK19 WILD-TYPE 
              9             150 
[1] "PTEN MUTATION ANALYSIS"
[1] 3
  PTEN MUTATED PTEN WILD-TYPE 
            13            146 
  PTEN MUTATED PTEN WILD-TYPE 
            13            146 
[1] "RAC1 MUTATION ANALYSIS"
[1] 3
  RAC1 MUTATED RAC1 WILD-TYPE 
            11            148 
  RAC1 MUTATED RAC1 WILD-TYPE 
            11            148 
[1] "ACSM2B MUTATION ANALYSIS"
[1] 3
  ACSM2B MUTATED ACSM2B WILD-TYPE 
              29              130 
  ACSM2B MUTATED ACSM2B WILD-TYPE 
              29              130 
[1] "CADM2 MUTATION ANALYSIS"
[1] 3
  CADM2 MUTATED CADM2 WILD-TYPE 
             17             142 
  CADM2 MUTATED CADM2 WILD-TYPE 
             17             142 
[1] "OR51S1 MUTATION ANALYSIS"
[1] 3
  OR51S1 MUTATED OR51S1 WILD-TYPE 
              16              143 
  OR51S1 MUTATED OR51S1 WILD-TYPE 
              16              143 
[1] "LCE1B MUTATION ANALYSIS"
[1] 3
  LCE1B MUTATED LCE1B WILD-TYPE 
             10             149 
  LCE1B MUTATED LCE1B WILD-TYPE 
             10             149 
[1] "IDH1 MUTATION ANALYSIS"
[1] 3
  IDH1 MUTATED IDH1 WILD-TYPE 
             7            152 
  IDH1 MUTATED IDH1 WILD-TYPE 
             7            152 
[1] "TAF1A MUTATION ANALYSIS"
[1] 3
  TAF1A MUTATED TAF1A WILD-TYPE 
             11             148 
  TAF1A MUTATED TAF1A WILD-TYPE 
             11             148 
[1] "NAP1L2 MUTATION ANALYSIS"
[1] 3
  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
              15              144 
  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
              15              144 
[1] "MUC7 MUTATION ANALYSIS"
[1] 3
  MUC7 MUTATED MUC7 WILD-TYPE 
            11            148 
  MUC7 MUTATED MUC7 WILD-TYPE 
            11            148 
[1] "PPP6C MUTATION ANALYSIS"
[1] 3
  PPP6C MUTATED PPP6C WILD-TYPE 
             14             145 
  PPP6C MUTATED PPP6C WILD-TYPE 
             14             145 
[1] "FRG2B MUTATION ANALYSIS"
[1] 3
  FRG2B MUTATED FRG2B WILD-TYPE 
             10             149 
  FRG2B MUTATED FRG2B WILD-TYPE 
             10             149 
[1] "USP29 MUTATION ANALYSIS"
[1] 3
  USP29 MUTATED USP29 WILD-TYPE 
             27             132 
  USP29 MUTATED USP29 WILD-TYPE 
             27             132 
[1] "PRB4 MUTATION ANALYSIS"
[1] 3
  PRB4 MUTATED PRB4 WILD-TYPE 
            17            142 
  PRB4 MUTATED PRB4 WILD-TYPE 
            17            142 
[1] "HIST1H2AA MUTATION ANALYSIS"
[1] 3
  HIST1H2AA MUTATED HIST1H2AA WILD-TYPE 
                  7                 152 
  HIST1H2AA MUTATED HIST1H2AA WILD-TYPE 
                  7                 152 
[1] "RPTN MUTATION ANALYSIS"
[1] 3
  RPTN MUTATED RPTN WILD-TYPE 
            26            133 
  RPTN MUTATED RPTN WILD-TYPE 
            26            133 
[1] "ZNF479 MUTATION ANALYSIS"
[1] 3
  ZNF479 MUTATED ZNF479 WILD-TYPE 
              13              146 
  ZNF479 MUTATED ZNF479 WILD-TYPE 
              13              146 
[1] "C8A MUTATION ANALYSIS"
[1] 3
  C8A MUTATED C8A WILD-TYPE 
           20           139 
  C8A MUTATED C8A WILD-TYPE 
           20           139 
[1] "FUT9 MUTATION ANALYSIS"
[1] 3
  FUT9 MUTATED FUT9 WILD-TYPE 
            17            142 
  FUT9 MUTATED FUT9 WILD-TYPE 
            17            142 
[1] "ZNF679 MUTATION ANALYSIS"
[1] 3
  ZNF679 MUTATED ZNF679 WILD-TYPE 
              15              144 
  ZNF679 MUTATED ZNF679 WILD-TYPE 
              15              144 
[1] "NRK MUTATION ANALYSIS"
[1] 3
  NRK MUTATED NRK WILD-TYPE 
           20           139 
  NRK MUTATED NRK WILD-TYPE 
           20           139 
[1] "CDH9 MUTATION ANALYSIS"
[1] 3
  CDH9 MUTATED CDH9 WILD-TYPE 
            26            133 
  CDH9 MUTATED CDH9 WILD-TYPE 
            26            133 
[1] "PRAMEF11 MUTATION ANALYSIS"
[1] 3
  PRAMEF11 MUTATED PRAMEF11 WILD-TYPE 
                15                144 
  PRAMEF11 MUTATED PRAMEF11 WILD-TYPE 
                15                144 
[1] "DDX3X MUTATION ANALYSIS"
[1] 3
  DDX3X MUTATED DDX3X WILD-TYPE 
             16             143 
  DDX3X MUTATED DDX3X WILD-TYPE 
             16             143 
[1] "GRXCR1 MUTATION ANALYSIS"
[1] 3
  GRXCR1 MUTATED GRXCR1 WILD-TYPE 
              15              144 
  GRXCR1 MUTATED GRXCR1 WILD-TYPE 
              15              144 
[1] "PRB2 MUTATION ANALYSIS"
[1] 3
  PRB2 MUTATED PRB2 WILD-TYPE 
            22            137 
  PRB2 MUTATED PRB2 WILD-TYPE 
            22            137 
[1] "ELF5 MUTATION ANALYSIS"
[1] 3
  ELF5 MUTATED ELF5 WILD-TYPE 
             5            154 
  ELF5 MUTATED ELF5 WILD-TYPE 
             5            154 
[1] "IL32 MUTATION ANALYSIS"
[1] 3
  IL32 MUTATED IL32 WILD-TYPE 
             7            152 
  IL32 MUTATED IL32 WILD-TYPE 
             7            152 
[1] "LUZP2 MUTATION ANALYSIS"
[1] 3
  LUZP2 MUTATED LUZP2 WILD-TYPE 
             13             146 
  LUZP2 MUTATED LUZP2 WILD-TYPE 
             13             146 
[1] "PDE1A MUTATION ANALYSIS"
[1] 3
  PDE1A MUTATED PDE1A WILD-TYPE 
             24             135 
  PDE1A MUTATED PDE1A WILD-TYPE 
             24             135 
[1] "RBM11 MUTATION ANALYSIS"
[1] 3
  RBM11 MUTATED RBM11 WILD-TYPE 
             10             149 
  RBM11 MUTATED RBM11 WILD-TYPE 
             10             149 
[1] "GLRB MUTATION ANALYSIS"
[1] 3
  GLRB MUTATED GLRB WILD-TYPE 
            18            141 
  GLRB MUTATED GLRB WILD-TYPE 
            18            141 
[1] "PRB1 MUTATION ANALYSIS"
[1] 3
  PRB1 MUTATED PRB1 WILD-TYPE 
            15            144 
  PRB1 MUTATED PRB1 WILD-TYPE 
            15            144 
[1] "KIAA1257 MUTATION ANALYSIS"
[1] 3
  KIAA1257 MUTATED KIAA1257 WILD-TYPE 
                 7                152 
  KIAA1257 MUTATED KIAA1257 WILD-TYPE 
                 7                152 
[1] "USP17L2 MUTATION ANALYSIS"
[1] 3
  USP17L2 MUTATED USP17L2 WILD-TYPE 
               15               144 
  USP17L2 MUTATED USP17L2 WILD-TYPE 
               15               144 
[1] "SPAG16 MUTATION ANALYSIS"
[1] 3
  SPAG16 MUTATED SPAG16 WILD-TYPE 
              13              146 
  SPAG16 MUTATED SPAG16 WILD-TYPE 
              13              146 
[1] "OR4M2 MUTATION ANALYSIS"
[1] 3
  OR4M2 MUTATED OR4M2 WILD-TYPE 
             17             142 
  OR4M2 MUTATED OR4M2 WILD-TYPE 
             17             142 
[1] "GFRAL MUTATION ANALYSIS"
[1] 3
  GFRAL MUTATED GFRAL WILD-TYPE 
             21             138 
  GFRAL MUTATED GFRAL WILD-TYPE 
             21             138 
[1] "UNC119B MUTATION ANALYSIS"
[1] 3
  UNC119B MUTATED UNC119B WILD-TYPE 
                3               156 
  UNC119B MUTATED UNC119B WILD-TYPE 
                3               156 
[1] "PHGDH MUTATION ANALYSIS"
[1] 3
  PHGDH MUTATED PHGDH WILD-TYPE 
              7             152 
  PHGDH MUTATED PHGDH WILD-TYPE 
              7             152 
[1] "STXBP5L MUTATION ANALYSIS"
[1] 3
  STXBP5L MUTATED STXBP5L WILD-TYPE 
               32               127 
  STXBP5L MUTATED STXBP5L WILD-TYPE 
               32               127 
[1] "TRAT1 MUTATION ANALYSIS"
[1] 3
  TRAT1 MUTATED TRAT1 WILD-TYPE 
             10             149 
  TRAT1 MUTATED TRAT1 WILD-TYPE 
             10             149 
[1] "ZNF844 MUTATION ANALYSIS"
[1] 3
  ZNF844 MUTATED ZNF844 WILD-TYPE 
               4              155 
  ZNF844 MUTATED ZNF844 WILD-TYPE 
               4              155 
[1] "TTN MUTATION ANALYSIS"
[1] 3
  TTN MUTATED TTN WILD-TYPE 
          123            36 
  TTN MUTATED TTN WILD-TYPE 
          123            36 
[1] "COPG2 MUTATION ANALYSIS"
[1] 3
  COPG2 MUTATED COPG2 WILD-TYPE 
              3             156 
  COPG2 MUTATED COPG2 WILD-TYPE 
              3             156 
[1] "DSG3 MUTATION ANALYSIS"
[1] 3
  DSG3 MUTATED DSG3 WILD-TYPE 
            34            125 
  DSG3 MUTATED DSG3 WILD-TYPE 
            34            125 
[1] "GML MUTATION ANALYSIS"
[1] 3
  GML MUTATED GML WILD-TYPE 
            8           151 
  GML MUTATED GML WILD-TYPE 
            8           151 
[1] "HHLA2 MUTATION ANALYSIS"
[1] 3
  HHLA2 MUTATED HHLA2 WILD-TYPE 
             10             149 
  HHLA2 MUTATED HHLA2 WILD-TYPE 
             10             149 
[1] "LILRB4 MUTATION ANALYSIS"
[1] 3
  LILRB4 MUTATED LILRB4 WILD-TYPE 
              23              136 
  LILRB4 MUTATED LILRB4 WILD-TYPE 
              23              136 
[1] "SLC38A4 MUTATION ANALYSIS"
[1] 3
  SLC38A4 MUTATED SLC38A4 WILD-TYPE 
               19               140 
  SLC38A4 MUTATED SLC38A4 WILD-TYPE 
               19               140 
[1] "OR2L3 MUTATION ANALYSIS"
[1] 3
  OR2L3 MUTATED OR2L3 WILD-TYPE 
             12             147 
  OR2L3 MUTATED OR2L3 WILD-TYPE 
             12             147 
[1] "HBD MUTATION ANALYSIS"
[1] 3
  HBD MUTATED HBD WILD-TYPE 
            8           151 
  HBD MUTATED HBD WILD-TYPE 
            8           151 
[1] "TBC1D3B MUTATION ANALYSIS"
[1] 3
  TBC1D3B MUTATED TBC1D3B WILD-TYPE 
                3               156 
  TBC1D3B MUTATED TBC1D3B WILD-TYPE 
                3               156 
[1] "TCEB3C MUTATION ANALYSIS"
[1] 3
  TCEB3C MUTATED TCEB3C WILD-TYPE 
              23              136 
  TCEB3C MUTATED TCEB3C WILD-TYPE 
              23              136 
[1] "CYLC2 MUTATION ANALYSIS"
[1] 3
  CYLC2 MUTATED CYLC2 WILD-TYPE 
             16             143 
  CYLC2 MUTATED CYLC2 WILD-TYPE 
             16             143 
[1] "HBG2 MUTATION ANALYSIS"
[1] 3
  HBG2 MUTATED HBG2 WILD-TYPE 
             6            153 
  HBG2 MUTATED HBG2 WILD-TYPE 
             6            153 
[1] "LOC649330 MUTATION ANALYSIS"
[1] 3
  LOC649330 MUTATED LOC649330 WILD-TYPE 
                 18                 141 
  LOC649330 MUTATED LOC649330 WILD-TYPE 
                 18                 141 
[1] "PARM1 MUTATION ANALYSIS"
[1] 3
  PARM1 MUTATED PARM1 WILD-TYPE 
             13             146 
  PARM1 MUTATED PARM1 WILD-TYPE 
             13             146 
[1] "CCK MUTATION ANALYSIS"
[1] 3
  CCK MUTATED CCK WILD-TYPE 
            5           154 
  CCK MUTATED CCK WILD-TYPE 
            5           154 
[1] "ZFP106 MUTATION ANALYSIS"
[1] 3
  ZFP106 MUTATED ZFP106 WILD-TYPE 
               6              153 
  ZFP106 MUTATED ZFP106 WILD-TYPE 
               6              153 
[1] "UGT2B15 MUTATION ANALYSIS"
[1] 3
  UGT2B15 MUTATED UGT2B15 WILD-TYPE 
               15               144 
  UGT2B15 MUTATED UGT2B15 WILD-TYPE 
               15               144 
[1] "DSG1 MUTATION ANALYSIS"
[1] 3
  DSG1 MUTATED DSG1 WILD-TYPE 
            24            135 
  DSG1 MUTATED DSG1 WILD-TYPE 
            24            135 
[1] "ARL16 MUTATION ANALYSIS"
[1] 3
  ARL16 MUTATED ARL16 WILD-TYPE 
              5             154 
  ARL16 MUTATED ARL16 WILD-TYPE 
              5             154 
[1] "VEGFC MUTATION ANALYSIS"
[1] 3
  VEGFC MUTATED VEGFC WILD-TYPE 
             15             144 
  VEGFC MUTATED VEGFC WILD-TYPE 
             15             144 
[1] "PSG4 MUTATION ANALYSIS"
[1] 3
  PSG4 MUTATED PSG4 WILD-TYPE 
            16            143 
  PSG4 MUTATED PSG4 WILD-TYPE 
            16            143 
[1] "DEFB119 MUTATION ANALYSIS"
[1] 3
  DEFB119 MUTATED DEFB119 WILD-TYPE 
                6               153 
  DEFB119 MUTATED DEFB119 WILD-TYPE 
                6               153 
[1] "KLHL4 MUTATION ANALYSIS"
[1] 3
  KLHL4 MUTATED KLHL4 WILD-TYPE 
             15             144 
  KLHL4 MUTATED KLHL4 WILD-TYPE 
             15             144 
[1] "EIF3D MUTATION ANALYSIS"
[1] 3
  EIF3D MUTATED EIF3D WILD-TYPE 
              3             156 
  EIF3D MUTATED EIF3D WILD-TYPE 
              3             156 
[1] "OR2W1 MUTATION ANALYSIS"
[1] 3
  OR2W1 MUTATED OR2W1 WILD-TYPE 
             12             147 
  OR2W1 MUTATED OR2W1 WILD-TYPE 
             12             147 
[1] "OR4N2 MUTATION ANALYSIS"
[1] 3
  OR4N2 MUTATED OR4N2 WILD-TYPE 
             18             141 
  OR4N2 MUTATED OR4N2 WILD-TYPE 
             18             141 
[1] "CCDC11 MUTATION ANALYSIS"
[1] 3
  CCDC11 MUTATED CCDC11 WILD-TYPE 
              15              144 
  CCDC11 MUTATED CCDC11 WILD-TYPE 
              15              144 
[1] "LIN7A MUTATION ANALYSIS"
[1] 3
  LIN7A MUTATED LIN7A WILD-TYPE 
              8             151 
  LIN7A MUTATED LIN7A WILD-TYPE 
              8             151 
[1] "RAPGEF5 MUTATION ANALYSIS"
[1] 3
  RAPGEF5 MUTATED RAPGEF5 WILD-TYPE 
                7               152 
  RAPGEF5 MUTATED RAPGEF5 WILD-TYPE 
                7               152 
[1] "CD2 MUTATION ANALYSIS"
[1] 3
  CD2 MUTATED CD2 WILD-TYPE 
           14           145 
  CD2 MUTATED CD2 WILD-TYPE 
           14           145 
[1] "C2ORF40 MUTATION ANALYSIS"
[1] 3
  C2ORF40 MUTATED C2ORF40 WILD-TYPE 
                4               155 
  C2ORF40 MUTATED C2ORF40 WILD-TYPE 
                4               155 
[1] "SGCZ MUTATION ANALYSIS"
[1] 3
  SGCZ MUTATED SGCZ WILD-TYPE 
            16            143 
  SGCZ MUTATED SGCZ WILD-TYPE 
            16            143 
[1] "SPANXN2 MUTATION ANALYSIS"
[1] 3
  SPANXN2 MUTATED SPANXN2 WILD-TYPE 
               13               146 
  SPANXN2 MUTATED SPANXN2 WILD-TYPE 
               13               146 
[1] "TLL1 MUTATION ANALYSIS"
[1] 3
  TLL1 MUTATED TLL1 WILD-TYPE 
            31            128 
  TLL1 MUTATED TLL1 WILD-TYPE 
            31            128 
[1] "C9ORF119 MUTATION ANALYSIS"
[1] 3
  C9ORF119 MUTATED C9ORF119 WILD-TYPE 
                 5                154 
  C9ORF119 MUTATED C9ORF119 WILD-TYPE 
                 5                154 
[1] "CCDC54 MUTATION ANALYSIS"
[1] 3
  CCDC54 MUTATED CCDC54 WILD-TYPE 
              10              149 
  CCDC54 MUTATED CCDC54 WILD-TYPE 
              10              149 
[1] "DEFB118 MUTATION ANALYSIS"
[1] 3
  DEFB118 MUTATED DEFB118 WILD-TYPE 
                6               153 
  DEFB118 MUTATED DEFB118 WILD-TYPE 
                6               153 
[1] "HTR3B MUTATION ANALYSIS"
[1] 3
  HTR3B MUTATED HTR3B WILD-TYPE 
             11             148 
  HTR3B MUTATED HTR3B WILD-TYPE 
             11             148 
[1] "MARCH11 MUTATION ANALYSIS"
[1] 3
  MARCH11 MUTATED MARCH11 WILD-TYPE 
                7               152 
  MARCH11 MUTATED MARCH11 WILD-TYPE 
                7               152 
[1] "MKX MUTATION ANALYSIS"
[1] 3
  MKX MUTATED MKX WILD-TYPE 
           10           149 
  MKX MUTATED MKX WILD-TYPE 
           10           149 
[1] "OR5H2 MUTATION ANALYSIS"
[1] 3
  OR5H2 MUTATED OR5H2 WILD-TYPE 
             11             148 
  OR5H2 MUTATED OR5H2 WILD-TYPE 
             11             148 
[1] "SIGLEC14 MUTATION ANALYSIS"
[1] 3
  SIGLEC14 MUTATED SIGLEC14 WILD-TYPE 
                 7                152 
  SIGLEC14 MUTATED SIGLEC14 WILD-TYPE 
                 7                152 
[1] "TUBB8 MUTATION ANALYSIS"
[1] 3
  TUBB8 MUTATED TUBB8 WILD-TYPE 
              7             152 
  TUBB8 MUTATED TUBB8 WILD-TYPE 
              7             152 
[1] "ZIM3 MUTATION ANALYSIS"
[1] 3
  ZIM3 MUTATED ZIM3 WILD-TYPE 
            14            145 
  ZIM3 MUTATED ZIM3 WILD-TYPE 
            14            145 
[1] "PRC1 MUTATION ANALYSIS"
[1] 3
  PRC1 MUTATED PRC1 WILD-TYPE 
             9            150 
  PRC1 MUTATED PRC1 WILD-TYPE 
             9            150 
[1] "MUM1L1 MUTATION ANALYSIS"
[1] 3
  MUM1L1 MUTATED MUM1L1 WILD-TYPE 
              16              143 
  MUM1L1 MUTATED MUM1L1 WILD-TYPE 
              16              143 
[1] "TRIM58 MUTATION ANALYSIS"
[1] 3
  TRIM58 MUTATED TRIM58 WILD-TYPE 
              12              147 
  TRIM58 MUTATED TRIM58 WILD-TYPE 
              12              147 
[1] "ANKRD20A4 MUTATION ANALYSIS"
[1] 3
  ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE 
                  3                 156 
  ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE 
                  3                 156 
[1] "OR5J2 MUTATION ANALYSIS"
[1] 3
  OR5J2 MUTATED OR5J2 WILD-TYPE 
             10             149 
  OR5J2 MUTATED OR5J2 WILD-TYPE 
             10             149 
[1] "CLEC14A MUTATION ANALYSIS"
[1] 3
  CLEC14A MUTATED CLEC14A WILD-TYPE 
               14               145 
  CLEC14A MUTATED CLEC14A WILD-TYPE 
               14               145 
[1] "FAM19A1 MUTATION ANALYSIS"
[1] 3
  FAM19A1 MUTATED FAM19A1 WILD-TYPE 
                7               152 
  FAM19A1 MUTATED FAM19A1 WILD-TYPE 
                7               152 
[1] "GK2 MUTATION ANALYSIS"
[1] 3
  GK2 MUTATED GK2 WILD-TYPE 
           20           139 
  GK2 MUTATED GK2 WILD-TYPE 
           20           139 
[1] "LONRF2 MUTATION ANALYSIS"
[1] 3
  LONRF2 MUTATED LONRF2 WILD-TYPE 
              13              146 
  LONRF2 MUTATED LONRF2 WILD-TYPE 
              13              146 
[1] "HAPLN1 MUTATION ANALYSIS"
[1] 3
  HAPLN1 MUTATED HAPLN1 WILD-TYPE 
               8              151 
  HAPLN1 MUTATED HAPLN1 WILD-TYPE 
               8              151 
[1] "NAP1L4 MUTATION ANALYSIS"
[1] 3
  NAP1L4 MUTATED NAP1L4 WILD-TYPE 
               6              153 
  NAP1L4 MUTATED NAP1L4 WILD-TYPE 
               6              153 
[1] "CLCC1 MUTATION ANALYSIS"
[1] 3
  CLCC1 MUTATED CLCC1 WILD-TYPE 
              9             150 
  CLCC1 MUTATED CLCC1 WILD-TYPE 
              9             150 
[1] "OR52J3 MUTATION ANALYSIS"
[1] 3
  OR52J3 MUTATED OR52J3 WILD-TYPE 
              10              149 
  OR52J3 MUTATED OR52J3 WILD-TYPE 
              10              149 
[1] "TMCO5A MUTATION ANALYSIS"
[1] 3
  TMCO5A MUTATED TMCO5A WILD-TYPE 
               6              153 
  TMCO5A MUTATED TMCO5A WILD-TYPE 
               6              153 
[1] "C4ORF22 MUTATION ANALYSIS"
[1] 3
  C4ORF22 MUTATED C4ORF22 WILD-TYPE 
                8               151 
  C4ORF22 MUTATED C4ORF22 WILD-TYPE 
                8               151 
[1] "MAP2K1 MUTATION ANALYSIS"
[1] 3
  MAP2K1 MUTATED MAP2K1 WILD-TYPE 
               8              151 
  MAP2K1 MUTATED MAP2K1 WILD-TYPE 
               8              151 
[1] "OR7D2 MUTATION ANALYSIS"
[1] 3
  OR7D2 MUTATED OR7D2 WILD-TYPE 
             14             145 
  OR7D2 MUTATED OR7D2 WILD-TYPE 
             14             145 
[1] "CXCR2 MUTATION ANALYSIS"
[1] 3
  CXCR2 MUTATED CXCR2 WILD-TYPE 
              9             150 
  CXCR2 MUTATED CXCR2 WILD-TYPE 
              9             150 
[1] "RBM22 MUTATION ANALYSIS"
[1] 3
  RBM22 MUTATED RBM22 WILD-TYPE 
              4             155 
  RBM22 MUTATED RBM22 WILD-TYPE 
              4             155 
[1] "CX3CL1 MUTATION ANALYSIS"
[1] 3
  CX3CL1 MUTATED CX3CL1 WILD-TYPE 
               3              156 
  CX3CL1 MUTATED CX3CL1 WILD-TYPE 
               3              156 
[1] "IGF2BP3 MUTATION ANALYSIS"
[1] 3
  IGF2BP3 MUTATED IGF2BP3 WILD-TYPE 
                3               156 
  IGF2BP3 MUTATED IGF2BP3 WILD-TYPE 
                3               156 
[1] "KLRC3 MUTATION ANALYSIS"
[1] 3
  KLRC3 MUTATED KLRC3 WILD-TYPE 
              4             155 
  KLRC3 MUTATED KLRC3 WILD-TYPE 
              4             155 
[1] "LRRIQ4 MUTATION ANALYSIS"
[1] 3
  LRRIQ4 MUTATED LRRIQ4 WILD-TYPE 
              15              144 
  LRRIQ4 MUTATED LRRIQ4 WILD-TYPE 
              15              144 
[1] "NR1H4 MUTATION ANALYSIS"
[1] 3
  NR1H4 MUTATED NR1H4 WILD-TYPE 
              9             150 
  NR1H4 MUTATED NR1H4 WILD-TYPE 
              9             150 
[1] "OR4A15 MUTATION ANALYSIS"
[1] 3
  OR4A15 MUTATED OR4A15 WILD-TYPE 
              14              145 
  OR4A15 MUTATED OR4A15 WILD-TYPE 
              14              145 
[1] "MAGEA4 MUTATION ANALYSIS"
[1] 3
  MAGEA4 MUTATED MAGEA4 WILD-TYPE 
               8              151 
  MAGEA4 MUTATED MAGEA4 WILD-TYPE 
               8              151 
[1] "DGAT2L6 MUTATION ANALYSIS"
[1] 3
  DGAT2L6 MUTATED DGAT2L6 WILD-TYPE 
                8               151 
  DGAT2L6 MUTATED DGAT2L6 WILD-TYPE 
                8               151 
[1] "RGS18 MUTATION ANALYSIS"
[1] 3
  RGS18 MUTATED RGS18 WILD-TYPE 
              7             152 
  RGS18 MUTATED RGS18 WILD-TYPE 
              7             152 
[1] "TSGA13 MUTATION ANALYSIS"
[1] 3
  TSGA13 MUTATED TSGA13 WILD-TYPE 
               6              153 
  TSGA13 MUTATED TSGA13 WILD-TYPE 
               6              153 
[1] "OPN5 MUTATION ANALYSIS"
[1] 3
  OPN5 MUTATED OPN5 WILD-TYPE 
             5            154 
  OPN5 MUTATED OPN5 WILD-TYPE 
             5            154 
[1] "SPINK13 MUTATION ANALYSIS"
[1] 3
  SPINK13 MUTATED SPINK13 WILD-TYPE 
                5               154 
  SPINK13 MUTATED SPINK13 WILD-TYPE 
                5               154 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "RADIATIONTHERAPY"                      
[10] "RADIATIONS.RADIATION.REGIMENINDICATION"
[11] "DISTANT.METASTASIS"                    
[12] "LYMPH.NODE.METASTASIS"                 
[13] "TUMOR.STAGECODE"                       
[14] "NEOPLASM.DISEASESTAGE"                 
[15] "BATCHNUMBER"                           

Input Data has 15 rows and 159 columns.

[1] "Batch" "15"   
[1] "Last Follow UP"
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
          NA           NA           NA         3687           NA           NA 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
          NA           NA           NA           NA         1483           NA 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
          NA         2167           NA           NA           NA          653 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW 
        4511         1513           82          194         1487           NA 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
        3564           NA         5926           NA           NA         3265 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
        1861           NA           NA          713           NA          870 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
          NA         6553          477           NA           NA           NA 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H 
          NA           NA           NA         3335         2399           NA 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L 
          NA         1455           NA         1205          979           NA 
TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
        1349           NA         1716         1136          440         1700 
TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
       10523           NA           NA           NA         2401          743 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE 
          NA         1787         1446         1315         9567         4134 
TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM 
        5536          686         2717         1664         1673         2296 
TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT 
        2766         3101           NA          435         1691          595 
TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC 
        2042           NA         3931           NA           NA           NA 
TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ 
          NA           NA           NA           NA           NA           NA 
TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ 
        4403         6175           NA           NA         7562           NA 
TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB 
        3150         4150         1265         1620          129         3733 
TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH 
         786          112          813           NA          714           NA 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A19O 
          NA           NA           NA           NA         1340           NA 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 
        2433         2443           NA           NA           NA           NA 
TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC 
          NA           NA           NA           NA           NA           NA 
TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ 
          NA         1225           NA           NA           NA           NA 
TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS 
          NA         3080           NA           NA           NA         4525 
TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 
        1617           NA         1505           NA           NA            6 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 
          NA         3664           NA         2577           NA           NA 
TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
          NA           NA         1204 
Variable 1:'AGE':	nDistinctValues=63,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=84,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=73,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=26,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 10:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'DISTANT.METASTASIS':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'LYMPH.NODE.METASTASIS':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'TUMOR.STAGECODE':	nDistinctValues=15,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'NEOPLASM.DISEASESTAGE':	nDistinctValues=13,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'BATCH.NUMBER':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                     "PRIMARY.SITE.OF.DISEASE"
[3] "GENDER"                  "DISTANT.METASTASIS"     
[5] "LYMPH.NODE.METASTASIS"   "TUMOR.STAGECODE"        
[7] "NEOPLASM.DISEASESTAGE"  
[1] "TUMOR.?STAGE" "6"           
[1] "stage2"
vv
 T0  T1 T1A T1B  T2 T2A T2B  T3 T3A T3B  T4 T4A T4B TIS  TX 
  6   3  14   3  17  13   6   4  19  12   5   6  25   1  11 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 159 columns, 1 survival variables, and 7 non-survival variables.
AGE, nv=63, binary=FALSE, numeric=TRUE
PRIMARY.SITE.OF.DISEASE, nv=4, binary=FALSE, numeric=FALSE
GENDER, nv=2, binary=FALSE, numeric=FALSE
DISTANT.METASTASIS, nv=5, binary=FALSE, numeric=FALSE
LYMPH.NODE.METASTASIS, nv=9, binary=FALSE, numeric=FALSE
TUMOR.STAGECODE, nv=0, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=13, binary=FALSE, numeric=FALSE

Clustering(1) Variable = TP53 MUTATION ANALYSIS
D1V1, survival
                sevent
clus2             0  1
  TP53 MUTATED   15 10
  TP53 WILD-TYPE 58 75
  TP53 MUTATED TP53 WILD-TYPE 
            25            133 
  TP53 MUTATED TP53 WILD-TYPE 
            10             75 
$`TP53 MUTATED`
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I5 TCGA-EE-A181 TCGA-EE-A29E TCGA-EE-A29L 
       48.89        36.03       107.34        33.73        39.62         2.56 
TCGA-EE-A29M TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A2 TCGA-EE-A2GC TCGA-EE-A2GJ 
       44.35        25.87        17.92        24.43        43.23        89.33 
TCGA-EE-A2GP TCGA-EE-A2GT TCGA-EE-A2MM TCGA-EE-A2MQ TCGA-EE-A2MU TCGA-EE-A3AA 
       13.87        19.56       167.87        43.23        53.26         4.24 
TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AG TCGA-ER-A3ET TCGA-FS-A1Z4 TCGA-FS-A1ZW 
        3.68        26.73        23.47        80.32        28.08        49.48 
TCGA-GN-A266 
       10.09 

$`TP53 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HY TCGA-DA-A1I0 
      148.31        49.74         2.70         6.38       117.17        20.38 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
      194.83       176.55        35.93        61.18        53.92        65.92 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       23.44        68.09        28.60        10.49       215.44        15.68 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
       29.82         8.65        14.70        26.86         4.93       109.64 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29H 
       78.87       168.26        63.32        47.84        13.97        32.19 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T 
       18.58        56.42        37.35        14.47        55.89       345.96 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GD 
       46.82        78.94        39.25        58.75        47.54       314.53 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM 
      135.91       182.01        22.55        54.71        55.00        75.48 
TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GU TCGA-EE-A2M5 
       90.94       101.95        14.30        55.59        67.13        21.67 
TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME 
      129.24        28.80        19.76        61.51        47.28       103.27 
TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML 
      103.17        16.96       204.62        96.23       144.76       203.01 
TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A3AB 
       47.54       248.61       103.56       136.44        41.59       122.73 
TCGA-EE-A3AC TCGA-EE-A3AF TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       25.84        13.81       138.77        12.59        26.37         6.41 
TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY 
      131.08        44.05        79.99       216.92        48.59       228.59 
TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC 
      202.62        20.91         7.76        27.68        48.85       357.37 
TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ 
       53.52        40.27        15.45         9.70        32.71        47.38 
TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS 
       23.93       101.26        74.73       133.55        11.41       148.77 
TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 
       53.16        26.56        27.06        27.02         0.20        76.41 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
      120.46       117.93        84.72        64.41        62.76        32.48 
TCGA-GN-A26D 
       39.58 

  TP53 MUTATED TP53 WILD-TYPE 
          2.56           0.20 
  TP53 MUTATED TP53 WILD-TYPE 
        167.87         357.37 
  TP53 MUTATED TP53 WILD-TYPE 
         33.73          49.74 
[1] "2.6 - 167.9 (33.7)" "0.2 - 357.4 (49.7)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" 
[1] "hr=" "1.2"
D1V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  TP53 MUTATED                    2             1
  TP53 WILD-TYPE                 20             0
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  TP53 MUTATED                                                                                          5
  TP53 WILD-TYPE                                                                                       27
                vv
clus             REGIONAL LYMPH NODE
  TP53 MUTATED                    17
  TP53 WILD-TYPE                  87
D1V3, multiclass
                                                                                          clus
vv                                                                                         TP53 MUTATED
  DISTANT METASTASIS                                                                                  2
  PRIMARY TUMOR                                                                                       1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            5
  REGIONAL LYMPH NODE                                                                                17
                                                                                          clus
vv                                                                                         TP53 WILD-TYPE
  DISTANT METASTASIS                                                                                   20
  PRIMARY TUMOR                                                                                         0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             27
  REGIONAL LYMPH NODE                                                                                  87
D1V4, binary
                cls
clus              0  1
  TP53 MUTATED   10 15
  TP53 WILD-TYPE 50 84
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED     10   15
  TP53 WILD-TYPE   50   84
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  FEMALE           10             50
  MALE             15             84
                vv
clus              M0  M1 M1A M1B M1C
  TP53 MUTATED    20   0   0   0   1
  TP53 WILD-TYPE 118   2   1   2   1
D1V5, multiclass
                vv
clus             N0 N1 N1A N1B N2A N2B N2C N3 NX
  TP53 MUTATED   11  0   3   4   1   1   0  1  0
  TP53 WILD-TYPE 76  2   4  11   3   9   5 13  2
D1V6, multiclass
D1V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  TP53 MUTATED             0       2        3        2        1         1
  TP53 WILD-TYPE           3      15        7       10       17         6
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  TP53 MUTATED           1         0         0          2          6          2
  TP53 WILD-TYPE         8         7         7          4         11         19
                vv
clus             STAGE IV
  TP53 MUTATED          1
  TP53 WILD-TYPE        4
D1V8, multiclass

Clustering(2) Variable = BRAF MUTATION ANALYSIS
D2V1, survival
                sevent
clus2             0  1
  BRAF MUTATED   39 40
  BRAF WILD-TYPE 34 45
  BRAF MUTATED BRAF WILD-TYPE 
            79             79 
  BRAF MUTATED BRAF WILD-TYPE 
            40             45 
$`BRAF MUTATED`
TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q9 TCGA-D3-A2J9 TCGA-D3-A2JD 
      112.54        71.80       121.22        31.59        23.77        11.87 
TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CE TCGA-D3-A3MO TCGA-D9-A148 TCGA-D9-A1JW 
       12.10        58.03        60.23         9.30       148.31         2.70 
TCGA-D9-A1JX TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I4 
        6.38        36.03       117.17        20.38       176.55        35.93 
TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A3F5 TCGA-DA-A3F8 
      107.34        61.18        53.92        23.44       215.44        15.68 
TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A 
       33.73        26.86       109.64        78.87       168.26        63.32 
TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
       47.84        39.62        32.19        44.35        18.58        56.42 
TCGA-EE-A29T TCGA-EE-A2A0 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GE 
      345.96        46.82        58.75        47.54        43.23       135.91 
TCGA-EE-A2GH TCGA-EE-A2GJ TCGA-EE-A2GM TCGA-EE-A2GO TCGA-EE-A2GS TCGA-EE-A2GT 
      182.01        89.33        75.48       101.95        55.59        19.56 
TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2ME TCGA-EE-A2MG 
       21.67       129.24        28.80        19.76       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MK TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A3AA TCGA-EE-A3AB 
       16.96       144.76       248.61        43.23         4.24       122.73 
TCGA-EE-A3AD TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19F TCGA-ER-A19J 
        3.68        13.81        23.47       138.77        26.37         6.41 
TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z7 TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZF 
       48.59       228.59         7.76       357.37        53.52        15.45 
TCGA-FS-A1ZH TCGA-FS-A1ZM TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZZ TCGA-GN-A262 
       32.71       101.26        11.41       148.77        27.02       120.46 
TCGA-GN-A265 
       84.72 

$`BRAF WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q8 TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2JF TCGA-D3-A3CC 
       16.57        28.08        43.40        65.49        48.76        71.24 
TCGA-D3-A3CF TCGA-D3-A3MV TCGA-D9-A149 TCGA-DA-A1HV TCGA-DA-A1I1 TCGA-DA-A1IA 
       24.53        21.47        49.74        48.89       194.83        65.92 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 
       68.09        28.60        10.49        29.82         8.65        14.70 
TCGA-EE-A185 TCGA-EE-A29D TCGA-EE-A29L TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
        4.93        13.97         2.56        37.35        14.47        55.89 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2GD 
       25.87        17.92        78.94        24.43        39.25       314.53 
TCGA-EE-A2GI TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GN TCGA-EE-A2GP TCGA-EE-A2GR 
       22.55        54.71        55.00        90.94        13.87        14.30 
TCGA-EE-A2GU TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2ML 
       67.13        61.51        47.28       204.62        96.23       203.01 
TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU 
      167.87        47.54       103.56       136.44        41.59        53.26 
TCGA-EE-A3AC TCGA-EE-A3AE TCGA-ER-A19D TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 
       25.84        26.73        12.59       131.08        44.05        79.99 
TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1ZA 
       80.32       216.92       202.62        20.91        28.08        27.68 
TCGA-FS-A1ZB TCGA-FS-A1ZE TCGA-FS-A1ZG TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZP 
       48.85        40.27         9.70        47.38        23.93        74.73 
TCGA-FS-A1ZQ TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FW-A3I3 
      133.55        53.16        26.56        49.48        27.06         0.20 
TCGA-GN-A261 TCGA-GN-A264 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
       76.41       117.93        10.09        64.41        62.76        32.48 
TCGA-GN-A26D 
       39.58 

  BRAF MUTATED BRAF WILD-TYPE 
           2.7            0.2 
  BRAF MUTATED BRAF WILD-TYPE 
        357.37         314.53 
  BRAF MUTATED BRAF WILD-TYPE 
         48.59          47.28 
[1] "2.7 - 357.4 (48.6)" "0.2 - 314.5 (47.3)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
  "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
  "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
  "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
  "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
  "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
  "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
  "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
  "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
  "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
  "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
  "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
  "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
  "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
  "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
  "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
  "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
  "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
  "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
  "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
  "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
  "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
  "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
  "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
  "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
  "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
  "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
  "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" 
[1] "hr=" "1.3"
D2V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  BRAF MUTATED                    7             1
  BRAF WILD-TYPE                 15             0
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  BRAF MUTATED                                                                                         14
  BRAF WILD-TYPE                                                                                       18
                vv
clus             REGIONAL LYMPH NODE
  BRAF MUTATED                    58
  BRAF WILD-TYPE                  46
D2V3, multiclass
                                                                                          clus
vv                                                                                         BRAF MUTATED
  DISTANT METASTASIS                                                                                  7
  PRIMARY TUMOR                                                                                       1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)           14
  REGIONAL LYMPH NODE                                                                                58
                                                                                          clus
vv                                                                                         BRAF WILD-TYPE
  DISTANT METASTASIS                                                                                   15
  PRIMARY TUMOR                                                                                         0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             18
  REGIONAL LYMPH NODE                                                                                  46
D2V4, binary
                cls
clus              0  1
  BRAF MUTATED   29 51
  BRAF WILD-TYPE 31 48
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRAF MUTATED     29   51
  BRAF WILD-TYPE   31   48
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  FEMALE           29             31
  MALE             51             48
                vv
clus             M0 M1 M1A M1B M1C
  BRAF MUTATED   68  1   1   1   2
  BRAF WILD-TYPE 70  1   0   1   0
D2V5, multiclass
                vv
clus             N0 N1 N1A N1B N2A N2B N2C N3 NX
  BRAF MUTATED   42  1   2   7   3   6   3  7  2
  BRAF WILD-TYPE 45  1   5   8   1   4   2  7  0
D2V6, multiclass
D2V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  BRAF MUTATED             2      10        3        5       10         4
  BRAF WILD-TYPE           1       7        7        7        8         3
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  BRAF MUTATED           2         3         5          3          7         10
  BRAF WILD-TYPE         7         4         2          3         10         11
                vv
clus             STAGE IV
  BRAF MUTATED          3
  BRAF WILD-TYPE        2
D2V8, multiclass

Clustering(3) Variable = C15ORF23 MUTATION ANALYSIS
D3V1, survival
                    sevent
clus2                 0  1
  C15ORF23 MUTATED    5  6
  C15ORF23 WILD-TYPE 68 79
  C15ORF23 MUTATED C15ORF23 WILD-TYPE 
                11                147 
  C15ORF23 MUTATED C15ORF23 WILD-TYPE 
                 6                 79 
$`C15ORF23 MUTATED`
TCGA-D3-A2JD TCGA-DA-A1IC TCGA-EE-A181 TCGA-EE-A2A2 TCGA-EE-A2GC TCGA-EE-A2GD 
       11.87        68.09        33.73        24.43        43.23       314.53 
TCGA-EE-A2M5 TCGA-EE-A2MP TCGA-EE-A3AH TCGA-FS-A1ZT TCGA-GN-A266 
       21.67       248.61       138.77        53.16        10.09 

$`C15ORF23 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 
       43.40        65.49        23.77        48.76        12.10        58.03 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
       71.24        60.23        24.53         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
       49.74         2.70         6.38        48.89        36.03       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
       20.38       194.83       176.55        35.93       107.34        61.18 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       53.92        65.92        23.44        28.60        10.49       215.44 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       15.68        29.82         8.65        14.70        26.86         4.93 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
      109.64        78.87       168.26        63.32        47.84        13.97 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
       39.62        32.19         2.56        44.35        18.58        56.42 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X 
       37.35        14.47        55.89       345.96        25.87        17.92 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GE 
       46.82        78.94        39.25        58.75        47.54       135.91 
TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM 
      182.01        22.55        89.33        54.71        55.00        75.48 
TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT 
       90.94       101.95        13.87        14.30        55.59        19.56 
TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD 
       67.13       129.24        28.80        19.76        61.51        47.28 
TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK 
      103.27       103.17        16.96       204.62        96.23       144.76 
TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS 
      203.01       167.87        47.54        43.23       103.56       136.44 
TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD 
       41.59        53.26         4.24       122.73        25.84         3.68 
TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       26.73        13.81        23.47        12.59        26.37         6.41 
TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX 
      131.08        44.05        79.99        80.32       216.92        48.59 
TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA 
      228.59       202.62        20.91        28.08         7.76        27.68 
TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG 
       48.85       357.37        53.52        40.27        15.45         9.70 
TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ 
       32.71        47.38        23.93       101.26        74.73       133.55 
TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ 
       11.41       148.77        26.56        49.48        27.06        27.02 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 
        0.20        76.41       120.46       117.93        84.72        64.41 
TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       62.76        32.48        39.58 

  C15ORF23 MUTATED C15ORF23 WILD-TYPE 
             10.09               0.20 
  C15ORF23 MUTATED C15ORF23 WILD-TYPE 
            314.53             357.37 
  C15ORF23 MUTATED C15ORF23 WILD-TYPE 
             43.23              47.54 
[1] "10.1 - 314.5 (43.2)" "0.2 - 357.4 (47.5)" 
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JF         TCGA-D3-A2JK 
  "C15ORF23 MUTATED" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A3C6         TCGA-D3-A3CC         TCGA-D3-A3CE 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A3CF         TCGA-D3-A3MO         TCGA-D3-A3MV 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D9-A148         TCGA-D9-A149         TCGA-D9-A1JW 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D9-A1JX         TCGA-DA-A1HV         TCGA-DA-A1HW 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-DA-A1HY         TCGA-DA-A1I0         TCGA-DA-A1I1 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-DA-A1I2         TCGA-DA-A1I4         TCGA-DA-A1I5 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-DA-A1I7         TCGA-DA-A1I8         TCGA-DA-A1IA 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-DA-A1IB         TCGA-DA-A1IC         TCGA-DA-A3F2 
"C15ORF23 WILD-TYPE"   "C15ORF23 MUTATED" "C15ORF23 WILD-TYPE" 
        TCGA-DA-A3F3         TCGA-DA-A3F5         TCGA-DA-A3F8 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A17X         TCGA-EE-A17Z         TCGA-EE-A181 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE"   "C15ORF23 MUTATED" 
        TCGA-EE-A182         TCGA-EE-A183         TCGA-EE-A185 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A20B         TCGA-EE-A20F         TCGA-EE-A20H 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A29A         TCGA-EE-A29C         TCGA-EE-A29D 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A29E         TCGA-EE-A29H         TCGA-EE-A29L 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A29M         TCGA-EE-A29N         TCGA-EE-A29P 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A29Q         TCGA-EE-A29R         TCGA-EE-A29S 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A29T         TCGA-EE-A29V         TCGA-EE-A29X 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2A0         TCGA-EE-A2A1         TCGA-EE-A2A2 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE"   "C15ORF23 MUTATED" 
        TCGA-EE-A2A5         TCGA-EE-A2A6         TCGA-EE-A2GB 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2GC         TCGA-EE-A2GD         TCGA-EE-A2GE 
  "C15ORF23 MUTATED"   "C15ORF23 MUTATED" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2GH         TCGA-EE-A2GI         TCGA-EE-A2GJ 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2GK         TCGA-EE-A2GL         TCGA-EE-A2GM 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2GN         TCGA-EE-A2GO         TCGA-EE-A2GP 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2GR         TCGA-EE-A2GS         TCGA-EE-A2GT 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2GU         TCGA-EE-A2M5         TCGA-EE-A2M6 
"C15ORF23 WILD-TYPE"   "C15ORF23 MUTATED" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2M7         TCGA-EE-A2M8         TCGA-EE-A2MC 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2MD         TCGA-EE-A2ME         TCGA-EE-A2MG 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2MH         TCGA-EE-A2MI         TCGA-EE-A2MJ 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2MK         TCGA-EE-A2ML         TCGA-EE-A2MM 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2MN         TCGA-EE-A2MP         TCGA-EE-A2MQ 
"C15ORF23 WILD-TYPE"   "C15ORF23 MUTATED" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2MR         TCGA-EE-A2MS         TCGA-EE-A2MT 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2MU         TCGA-EE-A3AA         TCGA-EE-A3AB 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A3AC         TCGA-EE-A3AD         TCGA-EE-A3AE 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A3AF         TCGA-EE-A3AG         TCGA-EE-A3AH 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE"   "C15ORF23 MUTATED" 
        TCGA-ER-A19D         TCGA-ER-A19F         TCGA-ER-A19J 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-ER-A19L         TCGA-ER-A19N         TCGA-ER-A1A1 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-ER-A3ET         TCGA-FS-A1YW         TCGA-FS-A1YX 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-FS-A1YY         TCGA-FS-A1Z0         TCGA-FS-A1Z3 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-FS-A1Z4         TCGA-FS-A1Z7         TCGA-FS-A1ZA 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-FS-A1ZB         TCGA-FS-A1ZC         TCGA-FS-A1ZD 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZQ 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-FS-A1ZR         TCGA-FS-A1ZS         TCGA-FS-A1ZT 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE"   "C15ORF23 MUTATED" 
        TCGA-FS-A1ZU         TCGA-FS-A1ZW         TCGA-FS-A1ZY 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-FS-A1ZZ         TCGA-FW-A3I3         TCGA-GN-A261 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-GN-A262         TCGA-GN-A264         TCGA-GN-A265 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-GN-A266         TCGA-GN-A267         TCGA-GN-A268 
  "C15ORF23 MUTATED" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-GN-A26A         TCGA-GN-A26D 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JF         TCGA-D3-A2JK 
  "C15ORF23 MUTATED" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A3C6         TCGA-D3-A3CC         TCGA-D3-A3CE 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A3CF         TCGA-D3-A3MO         TCGA-D3-A3MV 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D9-A148         TCGA-D9-A149         TCGA-D9-A1JW 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D9-A1JX         TCGA-DA-A1HV         TCGA-DA-A1HW 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-DA-A1HY         TCGA-DA-A1I0         TCGA-DA-A1I1 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-DA-A1I2         TCGA-DA-A1I4         TCGA-DA-A1I5 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-DA-A1I7         TCGA-DA-A1I8         TCGA-DA-A1IA 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-DA-A1IB         TCGA-DA-A1IC         TCGA-DA-A3F2 
"C15ORF23 WILD-TYPE"   "C15ORF23 MUTATED" "C15ORF23 WILD-TYPE" 
        TCGA-DA-A3F3         TCGA-DA-A3F5         TCGA-DA-A3F8 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A17X         TCGA-EE-A17Z         TCGA-EE-A181 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE"   "C15ORF23 MUTATED" 
        TCGA-EE-A182         TCGA-EE-A183         TCGA-EE-A185 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A20B         TCGA-EE-A20F         TCGA-EE-A20H 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A29A         TCGA-EE-A29C         TCGA-EE-A29D 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A29E         TCGA-EE-A29H         TCGA-EE-A29L 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A29M         TCGA-EE-A29N         TCGA-EE-A29P 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A29Q         TCGA-EE-A29R         TCGA-EE-A29S 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A29T         TCGA-EE-A29V         TCGA-EE-A29X 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2A0         TCGA-EE-A2A1         TCGA-EE-A2A2 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE"   "C15ORF23 MUTATED" 
        TCGA-EE-A2A5         TCGA-EE-A2A6         TCGA-EE-A2GB 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2GC         TCGA-EE-A2GD         TCGA-EE-A2GE 
  "C15ORF23 MUTATED"   "C15ORF23 MUTATED" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2GH         TCGA-EE-A2GI         TCGA-EE-A2GJ 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2GK         TCGA-EE-A2GL         TCGA-EE-A2GM 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2GN         TCGA-EE-A2GO         TCGA-EE-A2GP 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2GR         TCGA-EE-A2GS         TCGA-EE-A2GT 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2GU         TCGA-EE-A2M5         TCGA-EE-A2M6 
"C15ORF23 WILD-TYPE"   "C15ORF23 MUTATED" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2M7         TCGA-EE-A2M8         TCGA-EE-A2MC 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2MD         TCGA-EE-A2ME         TCGA-EE-A2MG 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2MH         TCGA-EE-A2MI         TCGA-EE-A2MJ 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2MK         TCGA-EE-A2ML         TCGA-EE-A2MM 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2MN         TCGA-EE-A2MP         TCGA-EE-A2MQ 
"C15ORF23 WILD-TYPE"   "C15ORF23 MUTATED" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2MR         TCGA-EE-A2MS         TCGA-EE-A2MT 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2MU         TCGA-EE-A3AA         TCGA-EE-A3AB 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A3AC         TCGA-EE-A3AD         TCGA-EE-A3AE 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A3AF         TCGA-EE-A3AG         TCGA-EE-A3AH 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE"   "C15ORF23 MUTATED" 
        TCGA-ER-A19D         TCGA-ER-A19F         TCGA-ER-A19J 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-ER-A19L         TCGA-ER-A19N         TCGA-ER-A1A1 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-ER-A3ET         TCGA-FS-A1YW         TCGA-FS-A1YX 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-FS-A1YY         TCGA-FS-A1Z0         TCGA-FS-A1Z3 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-FS-A1Z4         TCGA-FS-A1Z7         TCGA-FS-A1ZA 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-FS-A1ZB         TCGA-FS-A1ZC         TCGA-FS-A1ZD 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZQ 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-FS-A1ZR         TCGA-FS-A1ZS         TCGA-FS-A1ZT 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE"   "C15ORF23 MUTATED" 
        TCGA-FS-A1ZU         TCGA-FS-A1ZW         TCGA-FS-A1ZY 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-FS-A1ZZ         TCGA-FW-A3I3         TCGA-GN-A261 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-GN-A262         TCGA-GN-A264         TCGA-GN-A265 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-GN-A266         TCGA-GN-A267         TCGA-GN-A268 
  "C15ORF23 MUTATED" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-GN-A26A         TCGA-GN-A26D 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JF         TCGA-D3-A2JK 
  "C15ORF23 MUTATED" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A3C6         TCGA-D3-A3CC         TCGA-D3-A3CE 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D3-A3CF         TCGA-D3-A3MO         TCGA-D3-A3MV 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D9-A148         TCGA-D9-A149         TCGA-D9-A1JW 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-D9-A1JX         TCGA-DA-A1HV         TCGA-DA-A1HW 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-DA-A1HY         TCGA-DA-A1I0         TCGA-DA-A1I1 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-DA-A1I2         TCGA-DA-A1I4         TCGA-DA-A1I5 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-DA-A1I7         TCGA-DA-A1I8         TCGA-DA-A1IA 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-DA-A1IB         TCGA-DA-A1IC         TCGA-DA-A3F2 
"C15ORF23 WILD-TYPE"   "C15ORF23 MUTATED" "C15ORF23 WILD-TYPE" 
        TCGA-DA-A3F3         TCGA-DA-A3F5         TCGA-DA-A3F8 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A17X         TCGA-EE-A17Z         TCGA-EE-A181 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE"   "C15ORF23 MUTATED" 
        TCGA-EE-A182         TCGA-EE-A183         TCGA-EE-A185 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A20B         TCGA-EE-A20F         TCGA-EE-A20H 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A29A         TCGA-EE-A29C         TCGA-EE-A29D 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A29E         TCGA-EE-A29H         TCGA-EE-A29L 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A29M         TCGA-EE-A29N         TCGA-EE-A29P 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A29Q         TCGA-EE-A29R         TCGA-EE-A29S 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A29T         TCGA-EE-A29V         TCGA-EE-A29X 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2A0         TCGA-EE-A2A1         TCGA-EE-A2A2 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE"   "C15ORF23 MUTATED" 
        TCGA-EE-A2A5         TCGA-EE-A2A6         TCGA-EE-A2GB 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2GC         TCGA-EE-A2GD         TCGA-EE-A2GE 
  "C15ORF23 MUTATED"   "C15ORF23 MUTATED" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2GH         TCGA-EE-A2GI         TCGA-EE-A2GJ 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2GK         TCGA-EE-A2GL         TCGA-EE-A2GM 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2GN         TCGA-EE-A2GO         TCGA-EE-A2GP 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2GR         TCGA-EE-A2GS         TCGA-EE-A2GT 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2GU         TCGA-EE-A2M5         TCGA-EE-A2M6 
"C15ORF23 WILD-TYPE"   "C15ORF23 MUTATED" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2M7         TCGA-EE-A2M8         TCGA-EE-A2MC 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2MD         TCGA-EE-A2ME         TCGA-EE-A2MG 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2MH         TCGA-EE-A2MI         TCGA-EE-A2MJ 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2MK         TCGA-EE-A2ML         TCGA-EE-A2MM 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2MN         TCGA-EE-A2MP         TCGA-EE-A2MQ 
"C15ORF23 WILD-TYPE"   "C15ORF23 MUTATED" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2MR         TCGA-EE-A2MS         TCGA-EE-A2MT 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A2MU         TCGA-EE-A3AA         TCGA-EE-A3AB 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A3AC         TCGA-EE-A3AD         TCGA-EE-A3AE 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-EE-A3AF         TCGA-EE-A3AG         TCGA-EE-A3AH 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE"   "C15ORF23 MUTATED" 
        TCGA-ER-A19D         TCGA-ER-A19F         TCGA-ER-A19J 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-ER-A19L         TCGA-ER-A19N         TCGA-ER-A1A1 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-ER-A3ET         TCGA-FS-A1YW         TCGA-FS-A1YX 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-FS-A1YY         TCGA-FS-A1Z0         TCGA-FS-A1Z3 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-FS-A1Z4         TCGA-FS-A1Z7         TCGA-FS-A1ZA 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-FS-A1ZB         TCGA-FS-A1ZC         TCGA-FS-A1ZD 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZQ 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-FS-A1ZR         TCGA-FS-A1ZS         TCGA-FS-A1ZT 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE"   "C15ORF23 MUTATED" 
        TCGA-FS-A1ZU         TCGA-FS-A1ZW         TCGA-FS-A1ZY 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-FS-A1ZZ         TCGA-FW-A3I3         TCGA-GN-A261 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-GN-A262         TCGA-GN-A264         TCGA-GN-A265 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-GN-A266         TCGA-GN-A267         TCGA-GN-A268 
  "C15ORF23 MUTATED" "C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
        TCGA-GN-A26A         TCGA-GN-A26D 
"C15ORF23 WILD-TYPE" "C15ORF23 WILD-TYPE" 
[1] "hr=" "1.2"
D3V2, continuous
                    vv
clus                 DISTANT METASTASIS PRIMARY TUMOR
  C15ORF23 MUTATED                    1             0
  C15ORF23 WILD-TYPE                 21             1
                    vv
clus                 REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  C15ORF23 MUTATED                                                                                          3
  C15ORF23 WILD-TYPE                                                                                       29
                    vv
clus                 REGIONAL LYMPH NODE
  C15ORF23 MUTATED                     7
  C15ORF23 WILD-TYPE                  97
D3V3, multiclass
                                                                                          clus
vv                                                                                         C15ORF23 MUTATED
  DISTANT METASTASIS                                                                                      1
  PRIMARY TUMOR                                                                                           0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                3
  REGIONAL LYMPH NODE                                                                                     7
                                                                                          clus
vv                                                                                         C15ORF23 WILD-TYPE
  DISTANT METASTASIS                                                                                       21
  PRIMARY TUMOR                                                                                             1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                 29
  REGIONAL LYMPH NODE                                                                                      97
D3V4, binary
                    cls
clus                  0  1
  C15ORF23 MUTATED    3  8
  C15ORF23 WILD-TYPE 57 91
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C15ORF23 MUTATED      3    8
  C15ORF23 WILD-TYPE   57   91
        clus
vv       C15ORF23 MUTATED C15ORF23 WILD-TYPE
  FEMALE                3                 57
  MALE                  8                 91
                    vv
clus                  M0  M1 M1A M1B M1C
  C15ORF23 MUTATED    10   0   0   0   0
  C15ORF23 WILD-TYPE 128   2   1   2   2
D3V5, multiclass
                    vv
clus                 N0 N1 N1A N1B N2A N2B N2C N3 NX
  C15ORF23 MUTATED    6  0   0   3   0   0   1  0  0
  C15ORF23 WILD-TYPE 81  2   7  12   4  10   4 14  2
D3V6, multiclass
D3V7, continuous
                    vv
clus                 I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  C15ORF23 MUTATED             0       2        0        0        2         0
  C15ORF23 WILD-TYPE           3      15       10       12       16         7
                    vv
clus                 STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  C15ORF23 MUTATED           2         0         1          0          2
  C15ORF23 WILD-TYPE         7         7         6          6         15
                    vv
clus                 STAGE IIIC STAGE IV
  C15ORF23 MUTATED            1        0
  C15ORF23 WILD-TYPE         20        5
D3V8, multiclass

Clustering(4) Variable = CDKN2A MUTATION ANALYSIS
D4V1, survival
                  sevent
clus2               0  1
  CDKN2A MUTATED   12 13
  CDKN2A WILD-TYPE 61 72
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              25              133 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              13               72 
$`CDKN2A MUTATED`
TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3MV TCGA-DA-A1HV TCGA-DA-A1HY 
       11.87        48.76        12.10        21.47        48.89       117.17 
TCGA-EE-A181 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A29E TCGA-EE-A29V TCGA-EE-A2A6 
       33.73         4.93       109.64        39.62        25.87        58.75 
TCGA-EE-A2GC TCGA-EE-A2GM TCGA-EE-A2GP TCGA-EE-A2M5 TCGA-EE-A2MD TCGA-EE-A3AE 
       43.23        75.48        13.87        21.67        47.28        26.73 
TCGA-EE-A3AG TCGA-ER-A19D TCGA-ER-A19L TCGA-FS-A1YW TCGA-FS-A1ZQ TCGA-FS-A1ZW 
       23.47        12.59       131.08       216.92       133.55        49.48 
TCGA-GN-A26A 
       32.48 

$`CDKN2A WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE 
       43.40        65.49        23.77        58.03        71.24        60.23 
TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX 
       24.53         9.30       148.31        49.74         2.70         6.38 
TCGA-DA-A1HW TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
       36.03        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       61.18        53.92        65.92        23.44        68.09        28.60 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 
       10.49       215.44        15.68        29.82         8.65        14.70 
TCGA-EE-A183 TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
       26.86        78.87       168.26        63.32        47.84        13.97 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       32.19         2.56        44.35        18.58        56.42        37.35 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
       14.47        55.89       345.96        17.92        46.82        78.94 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2GB TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH 
       24.43        39.25        47.54       314.53       135.91       182.01 
TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GN TCGA-EE-A2GO 
       22.55        89.33        54.71        55.00        90.94       101.95 
TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2M7 
       14.30        55.59        19.56        67.13       129.24        28.80 
TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI 
       19.76        61.51       103.27       103.17        16.96       204.62 
TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP 
       96.23       144.76       203.01       167.87        47.54       248.61 
TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA 
       43.23       103.56       136.44        41.59        53.26         4.24 
TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AF TCGA-EE-A3AH TCGA-ER-A19F 
      122.73        25.84         3.68        13.81       138.77        26.37 
TCGA-ER-A19J TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YX TCGA-FS-A1YY 
        6.41        44.05        79.99        80.32        48.59       228.59 
TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB 
      202.62        20.91        28.08         7.76        27.68        48.85 
TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH 
      357.37        53.52        40.27        15.45         9.70        32.71 
TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS 
       47.38        23.93       101.26        74.73        11.41       148.77 
TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 
       53.16        26.56        27.06        27.02         0.20        76.41 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 
      120.46       117.93        84.72        10.09        64.41        62.76 
TCGA-GN-A26D 
       39.58 

  CDKN2A MUTATED CDKN2A WILD-TYPE 
            4.93             0.20 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
          216.92           357.37 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
           39.62            48.59 
[1] "4.9 - 216.9 (39.6)" "0.2 - 357.4 (48.6)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED"   "CDKN2A MUTATED" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
  "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED"   "CDKN2A MUTATED" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
  "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED"   "CDKN2A MUTATED" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
  "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
[1] "hr=" "1.2"
D4V2, continuous
                  vv
clus               DISTANT METASTASIS PRIMARY TUMOR
  CDKN2A MUTATED                    3             0
  CDKN2A WILD-TYPE                 19             1
                  vv
clus               REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  CDKN2A MUTATED                                                                                          7
  CDKN2A WILD-TYPE                                                                                       25
                  vv
clus               REGIONAL LYMPH NODE
  CDKN2A MUTATED                    15
  CDKN2A WILD-TYPE                  89
D4V3, multiclass
                                                                                          clus
vv                                                                                         CDKN2A MUTATED
  DISTANT METASTASIS                                                                                    3
  PRIMARY TUMOR                                                                                         0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              7
  REGIONAL LYMPH NODE                                                                                  15
                                                                                          clus
vv                                                                                         CDKN2A WILD-TYPE
  DISTANT METASTASIS                                                                                     19
  PRIMARY TUMOR                                                                                           1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               25
  REGIONAL LYMPH NODE                                                                                    89
D4V4, binary
                  cls
clus                0  1
  CDKN2A MUTATED    9 16
  CDKN2A WILD-TYPE 51 83
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CDKN2A MUTATED      9   16
  CDKN2A WILD-TYPE   51   83
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  FEMALE              9               51
  MALE               16               83
                  vv
clus                M0  M1 M1A M1B M1C
  CDKN2A MUTATED    23   0   0   0   0
  CDKN2A WILD-TYPE 115   2   1   2   2
D4V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2A N2B N2C N3 NX
  CDKN2A MUTATED   12  0   3   3   1   2   0  2  0
  CDKN2A WILD-TYPE 75  2   4  12   3   8   5 12  2
D4V6, multiclass
D4V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  CDKN2A MUTATED             1       1        3        2        3         0
  CDKN2A WILD-TYPE           2      16        7       10       15         7
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  CDKN2A MUTATED           1         1         0          1          5
  CDKN2A WILD-TYPE         8         6         7          5         12
                  vv
clus               STAGE IIIC STAGE IV
  CDKN2A MUTATED            5        0
  CDKN2A WILD-TYPE         16        5
D4V8, multiclass

Clustering(5) Variable = NRAS MUTATION ANALYSIS
D5V1, survival
                sevent
clus2             0  1
  NRAS MUTATED   21 27
  NRAS WILD-TYPE 52 58
  NRAS MUTATED NRAS WILD-TYPE 
            48            110 
  NRAS MUTATED NRAS WILD-TYPE 
            27             58 
$`NRAS MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q8 TCGA-D3-A2J8 TCGA-D3-A3MV TCGA-DA-A1HV TCGA-DA-A1I1 
       16.57        28.08        65.49        21.47        48.89       194.83 
TCGA-DA-A3F3 TCGA-EE-A17X TCGA-EE-A185 TCGA-EE-A29L TCGA-EE-A29Q TCGA-EE-A29R 
       10.49        29.82         4.93         2.56        37.35        14.47 
TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
       55.89        25.87        17.92        78.94        24.43        39.25 
TCGA-EE-A2GD TCGA-EE-A2GJ TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GP 
      314.53        89.33        55.00        75.48        90.94        13.87 
TCGA-EE-A2GU TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN 
       67.13        61.51        47.28       203.01       167.87        47.54 
TCGA-EE-A2MU TCGA-EE-A3AC TCGA-ER-A19D TCGA-ER-A19N TCGA-FS-A1YW TCGA-FS-A1Z0 
       53.26        25.84        12.59        44.05       216.92       202.62 
TCGA-FS-A1Z3 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZE TCGA-FS-A1ZP TCGA-FS-A1ZQ 
       20.91        27.68        48.85        40.27        74.73       133.55 
TCGA-FS-A1ZT TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-GN-A267 TCGA-GN-A268 
       53.16        49.48        27.06        27.02        64.41        62.76 

$`NRAS WILD-TYPE`
TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A2J9 
      112.54        71.80       121.22        31.59        43.40        23.77 
TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE 
       11.87        48.76        12.10        58.03        71.24        60.23 
TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX 
       24.53         9.30       148.31        49.74         2.70         6.38 
TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
       36.03       117.17        20.38       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       61.18        53.92        65.92        23.44        68.09        28.60 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
      215.44        15.68         8.65        33.73        14.70        26.86 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
      109.64        78.87       168.26        63.32        47.84        13.97 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29T 
       39.62        32.19        44.35        18.58        56.42       345.96 
TCGA-EE-A2A0 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GE TCGA-EE-A2GH 
       46.82        58.75        47.54        43.23       135.91       182.01 
TCGA-EE-A2GI TCGA-EE-A2GK TCGA-EE-A2GO TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT 
       22.55        54.71       101.95        14.30        55.59        19.56 
TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2ME TCGA-EE-A2MG 
       21.67       129.24        28.80        19.76       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2MP TCGA-EE-A2MQ 
       16.96       204.62        96.23       144.76       248.61        43.23 
TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AD 
      103.56       136.44        41.59         4.24       122.73         3.68 
TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19F TCGA-ER-A19J 
       26.73        13.81        23.47       138.77        26.37         6.41 
TCGA-ER-A19L TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z4 
      131.08        79.99        80.32        48.59       228.59        28.08 
TCGA-FS-A1Z7 TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH 
        7.76       357.37        53.52        15.45         9.70        32.71 
TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZU 
       47.38        23.93       101.26        11.41       148.77        26.56 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        0.20        76.41       120.46       117.93        84.72        10.09 
TCGA-GN-A26A TCGA-GN-A26D 
       32.48        39.58 

  NRAS MUTATED NRAS WILD-TYPE 
          2.56           0.20 
  NRAS MUTATED NRAS WILD-TYPE 
        314.53         357.37 
  NRAS MUTATED NRAS WILD-TYPE 
        48.195         47.460 
[1] "2.6 - 314.5 (48.2)" "0.2 - 357.4 (47.5)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"NRAS WILD-TYPE"   "NRAS MUTATED"   "NRAS MUTATED"   "NRAS MUTATED" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"NRAS WILD-TYPE"   "NRAS MUTATED"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
  "NRAS MUTATED"   "NRAS MUTATED"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
  "NRAS MUTATED"   "NRAS MUTATED"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"NRAS WILD-TYPE"   "NRAS MUTATED"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"NRAS WILD-TYPE"   "NRAS MUTATED"   "NRAS MUTATED"   "NRAS MUTATED" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
  "NRAS MUTATED"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
  "NRAS MUTATED"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"NRAS WILD-TYPE"   "NRAS MUTATED"   "NRAS MUTATED"   "NRAS MUTATED" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED"   "NRAS MUTATED" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"NRAS WILD-TYPE"   "NRAS MUTATED"   "NRAS MUTATED"   "NRAS MUTATED" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"NRAS WILD-TYPE"   "NRAS MUTATED"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
  "NRAS MUTATED"   "NRAS MUTATED"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
  "NRAS MUTATED"   "NRAS MUTATED"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"NRAS WILD-TYPE"   "NRAS MUTATED"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"NRAS WILD-TYPE"   "NRAS MUTATED"   "NRAS MUTATED"   "NRAS MUTATED" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
  "NRAS MUTATED"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
  "NRAS MUTATED"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"NRAS WILD-TYPE"   "NRAS MUTATED"   "NRAS MUTATED"   "NRAS MUTATED" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED"   "NRAS MUTATED" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"NRAS WILD-TYPE"   "NRAS MUTATED"   "NRAS MUTATED"   "NRAS MUTATED" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"NRAS WILD-TYPE"   "NRAS MUTATED"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
  "NRAS MUTATED"   "NRAS MUTATED"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
  "NRAS MUTATED"   "NRAS MUTATED"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"NRAS WILD-TYPE"   "NRAS MUTATED"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"NRAS WILD-TYPE"   "NRAS MUTATED"   "NRAS MUTATED"   "NRAS MUTATED" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
  "NRAS MUTATED"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
  "NRAS MUTATED"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"NRAS WILD-TYPE"   "NRAS MUTATED"   "NRAS MUTATED"   "NRAS MUTATED" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED"   "NRAS MUTATED" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" 
[1] "hr=" "1.1"
D5V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  NRAS MUTATED                   10             0
  NRAS WILD-TYPE                 12             1
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  NRAS MUTATED                                                                                         10
  NRAS WILD-TYPE                                                                                       22
                vv
clus             REGIONAL LYMPH NODE
  NRAS MUTATED                    28
  NRAS WILD-TYPE                  76
D5V3, multiclass
                                                                                          clus
vv                                                                                         NRAS MUTATED
  DISTANT METASTASIS                                                                                 10
  PRIMARY TUMOR                                                                                       0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)           10
  REGIONAL LYMPH NODE                                                                                28
                                                                                          clus
vv                                                                                         NRAS WILD-TYPE
  DISTANT METASTASIS                                                                                   12
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             22
  REGIONAL LYMPH NODE                                                                                  76
D5V4, binary
                cls
clus              0  1
  NRAS MUTATED   18 30
  NRAS WILD-TYPE 42 69
[1] "tbl2"
                cls
clus             [,1] [,2]
  NRAS MUTATED     18   30
  NRAS WILD-TYPE   42   69
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  FEMALE           18             42
  MALE             30             69
                vv
clus             M0 M1 M1A M1B M1C
  NRAS MUTATED   44  0   0   1   0
  NRAS WILD-TYPE 94  2   1   1   2
D5V5, multiclass
                vv
clus             N0 N1 N1A N1B N2A N2B N2C N3 NX
  NRAS MUTATED   29  0   3   4   1   2   1  5  0
  NRAS WILD-TYPE 58  2   4  11   3   8   4  9  2
D5V6, multiclass
D5V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  NRAS MUTATED             1       3        5        6        4         3
  NRAS WILD-TYPE           2      14        5        6       14         4
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  NRAS MUTATED           5         2         1          1          7          6
  NRAS WILD-TYPE         4         5         6          5         10         15
                vv
clus             STAGE IV
  NRAS MUTATED          1
  NRAS WILD-TYPE        4
D5V8, multiclass

Clustering(6) Variable = OXA1L MUTATION ANALYSIS
D6V1, survival
                 sevent
clus2              0  1
  OXA1L MUTATED    2  2
  OXA1L WILD-TYPE 71 83
  OXA1L MUTATED OXA1L WILD-TYPE 
              4             154 
  OXA1L MUTATED OXA1L WILD-TYPE 
              2              83 
$`OXA1L MUTATED`
TCGA-DA-A1IA TCGA-EE-A181 TCGA-EE-A2GB TCGA-EE-A2MS 
       65.92        33.73        47.54       136.44 

$`OXA1L WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW 
      148.31        49.74         2.70         6.38        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       61.18        53.92        23.44        68.09        28.60        10.49 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 
      215.44        15.68        29.82         8.65        14.70        26.86 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.93       109.64        78.87       168.26        63.32        47.84 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N 
       13.97        39.62        32.19         2.56        44.35        18.58 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V 
       56.42        37.35        14.47        55.89       345.96        25.87 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
       17.92        46.82        78.94        24.43        39.25        58.75 
TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ 
       43.23       314.53       135.91       182.01        22.55        89.33 
TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP 
       54.71        55.00        75.48        90.94       101.95        13.87 
TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 
       14.30        55.59        19.56        67.13        21.67       129.24 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG 
       28.80        19.76        61.51        47.28       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM 
       16.96       204.62        96.23       144.76       203.01       167.87 
TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MT TCGA-EE-A2MU 
       47.54       248.61        43.23       103.56        41.59        53.26 
TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF 
        4.24       122.73        25.84         3.68        26.73        13.81 
TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
       23.47       138.77        12.59        26.37         6.41       131.08 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY 
       44.05        79.99        80.32       216.92        48.59       228.59 
TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB 
      202.62        20.91        28.08         7.76        27.68        48.85 
TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH 
      357.37        53.52        40.27        15.45         9.70        32.71 
TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR 
       47.38        23.93       101.26        74.73       133.55        11.41 
TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ 
      148.77        53.16        26.56        49.48        27.06        27.02 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        0.20        76.41       120.46       117.93        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       64.41        62.76        32.48        39.58 

  OXA1L MUTATED OXA1L WILD-TYPE 
          33.73            0.20 
  OXA1L MUTATED OXA1L WILD-TYPE 
         136.44          357.37 
  OXA1L MUTATED OXA1L WILD-TYPE 
          56.73           47.46 
[1] "33.7 - 136.4 (56.7)" "0.2 - 357.4 (47.5)" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
  "OXA1L MUTATED" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"OXA1L WILD-TYPE"   "OXA1L MUTATED" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
  "OXA1L MUTATED" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE"   "OXA1L MUTATED" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
  "OXA1L MUTATED" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"OXA1L WILD-TYPE"   "OXA1L MUTATED" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
  "OXA1L MUTATED" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE"   "OXA1L MUTATED" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
  "OXA1L MUTATED" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"OXA1L WILD-TYPE"   "OXA1L MUTATED" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
  "OXA1L MUTATED" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE"   "OXA1L MUTATED" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"OXA1L WILD-TYPE" "OXA1L WILD-TYPE" 
[1] "hr=" "1.2"
D6V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  OXA1L MUTATED                    1             0
  OXA1L WILD-TYPE                 21             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  OXA1L MUTATED                                                                                          0
  OXA1L WILD-TYPE                                                                                       32
                 vv
clus              REGIONAL LYMPH NODE
  OXA1L MUTATED                     3
  OXA1L WILD-TYPE                 101
D6V3, multiclass
                                                                                          clus
vv                                                                                         OXA1L MUTATED
  DISTANT METASTASIS                                                                                   1
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             0
  REGIONAL LYMPH NODE                                                                                  3
                                                                                          clus
vv                                                                                         OXA1L WILD-TYPE
  DISTANT METASTASIS                                                                                    21
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              32
  REGIONAL LYMPH NODE                                                                                  101
D6V4, binary
                 cls
clus               0  1
  OXA1L MUTATED    2  2
  OXA1L WILD-TYPE 58 97
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OXA1L MUTATED      2    2
  OXA1L WILD-TYPE   58   97
        clus
vv       OXA1L MUTATED OXA1L WILD-TYPE
  FEMALE             2              58
  MALE               2              97
                 vv
clus               M0  M1 M1A M1B M1C
  OXA1L MUTATED     4   0   0   0   0
  OXA1L WILD-TYPE 134   2   1   2   2
D6V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2A N2B N2C N3 NX
  OXA1L MUTATED    2  0   1   1   0   0   0  0  0
  OXA1L WILD-TYPE 85  2   6  14   4  10   5 14  2
D6V6, multiclass
D6V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  OXA1L MUTATED             0       0        0        0        2         0
  OXA1L WILD-TYPE           3      17       10       12       16         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  OXA1L MUTATED           0         0         0          1          1
  OXA1L WILD-TYPE         9         7         7          5         16
                 vv
clus              STAGE IIIC STAGE IV
  OXA1L MUTATED            0        0
  OXA1L WILD-TYPE         21        5
D6V8, multiclass

Clustering(7) Variable = STK19 MUTATION ANALYSIS
D7V1, survival
                 sevent
clus2              0  1
  STK19 MUTATED    3  6
  STK19 WILD-TYPE 70 79
  STK19 MUTATED STK19 WILD-TYPE 
              9             149 
  STK19 MUTATED STK19 WILD-TYPE 
              6              79 
$`STK19 MUTATED`
TCGA-DA-A1HV TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A2GD TCGA-EE-A2GI 
       48.89        33.73        26.86         4.93       314.53        22.55 
TCGA-EE-A2MG TCGA-FS-A1ZA TCGA-GN-A266 
      103.17        27.68        10.09 

$`STK19 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HW TCGA-DA-A1HY 
      148.31        49.74         2.70         6.38        36.03       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
       20.38       194.83       176.55        35.93       107.34        61.18 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       53.92        65.92        23.44        68.09        28.60        10.49 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A20B 
      215.44        15.68        29.82         8.65        14.70       109.64 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
       78.87       168.26        63.32        47.84        13.97        39.62 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       32.19         2.56        44.35        18.58        56.42        37.35 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
       14.47        55.89       345.96        25.87        17.92        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC 
       78.94        24.43        39.25        58.75        47.54        43.23 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM 
      135.91       182.01        89.33        54.71        55.00        75.48 
TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT 
       90.94       101.95        13.87        14.30        55.59        19.56 
TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC 
       67.13        21.67       129.24        28.80        19.76        61.51 
TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK 
       47.28       103.27        16.96       204.62        96.23       144.76 
TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR 
      203.01       167.87        47.54       248.61        43.23       103.56 
TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC 
      136.44        41.59        53.26         4.24       122.73        25.84 
TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D 
        3.68        26.73        13.81        23.47       138.77        12.59 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
       26.37         6.41       131.08        44.05        79.99        80.32 
TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 
      216.92        48.59       228.59       202.62        20.91        28.08 
TCGA-FS-A1Z7 TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF 
        7.76        48.85       357.37        53.52        40.27        15.45 
TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP 
        9.70        32.71        47.38        23.93       101.26        74.73 
TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW 
      133.55        11.41       148.77        53.16        26.56        49.48 
TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
       27.06        27.02         0.20        76.41       120.46       117.93 
TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       84.72        64.41        62.76        32.48        39.58 

  STK19 MUTATED STK19 WILD-TYPE 
           4.93            0.20 
  STK19 MUTATED STK19 WILD-TYPE 
         314.53          357.37 
  STK19 MUTATED STK19 WILD-TYPE 
          27.68           47.84 
[1] "4.9 - 314.5 (27.7)" "0.2 - 357.4 (47.8)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"STK19 WILD-TYPE" "STK19 WILD-TYPE"   "STK19 MUTATED" "STK19 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"STK19 WILD-TYPE"   "STK19 MUTATED" "STK19 WILD-TYPE"   "STK19 MUTATED" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
  "STK19 MUTATED" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"STK19 WILD-TYPE" "STK19 WILD-TYPE"   "STK19 MUTATED" "STK19 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"STK19 WILD-TYPE"   "STK19 MUTATED" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
  "STK19 MUTATED" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
  "STK19 MUTATED" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"STK19 WILD-TYPE"   "STK19 MUTATED" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"STK19 WILD-TYPE" "STK19 WILD-TYPE"   "STK19 MUTATED" "STK19 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"STK19 WILD-TYPE"   "STK19 MUTATED" "STK19 WILD-TYPE"   "STK19 MUTATED" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
  "STK19 MUTATED" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"STK19 WILD-TYPE" "STK19 WILD-TYPE"   "STK19 MUTATED" "STK19 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"STK19 WILD-TYPE"   "STK19 MUTATED" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
  "STK19 MUTATED" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
  "STK19 MUTATED" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"STK19 WILD-TYPE"   "STK19 MUTATED" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"STK19 WILD-TYPE" "STK19 WILD-TYPE"   "STK19 MUTATED" "STK19 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"STK19 WILD-TYPE"   "STK19 MUTATED" "STK19 WILD-TYPE"   "STK19 MUTATED" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
  "STK19 MUTATED" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"STK19 WILD-TYPE" "STK19 WILD-TYPE"   "STK19 MUTATED" "STK19 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"STK19 WILD-TYPE"   "STK19 MUTATED" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
  "STK19 MUTATED" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
  "STK19 MUTATED" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"STK19 WILD-TYPE"   "STK19 MUTATED" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" 
[1] "hr=" "1.5"
D7V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  STK19 MUTATED                    1             0
  STK19 WILD-TYPE                 21             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  STK19 MUTATED                                                                                          2
  STK19 WILD-TYPE                                                                                       30
                 vv
clus              REGIONAL LYMPH NODE
  STK19 MUTATED                     6
  STK19 WILD-TYPE                  98
D7V3, multiclass
                                                                                          clus
vv                                                                                         STK19 MUTATED
  DISTANT METASTASIS                                                                                   1
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             2
  REGIONAL LYMPH NODE                                                                                  6
                                                                                          clus
vv                                                                                         STK19 WILD-TYPE
  DISTANT METASTASIS                                                                                    21
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              30
  REGIONAL LYMPH NODE                                                                                   98
D7V4, binary
                 cls
clus               0  1
  STK19 MUTATED    5  4
  STK19 WILD-TYPE 55 95
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STK19 MUTATED      5    4
  STK19 WILD-TYPE   55   95
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  FEMALE             5              55
  MALE               4              95
                 vv
clus               M0  M1 M1A M1B M1C
  STK19 MUTATED     8   0   0   0   0
  STK19 WILD-TYPE 130   2   1   2   2
D7V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2A N2B N2C N3 NX
  STK19 MUTATED    5  0   0   0   0   1   1  1  0
  STK19 WILD-TYPE 82  2   7  15   4   9   4 13  2
D7V6, multiclass
D7V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  STK19 MUTATED             0       2        1        0        1         0
  STK19 WILD-TYPE           3      15        9       12       17         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  STK19 MUTATED           1         0         0          0          2
  STK19 WILD-TYPE         8         7         7          6         15
                 vv
clus              STAGE IIIC STAGE IV
  STK19 MUTATED            1        0
  STK19 WILD-TYPE         20        5
D7V8, multiclass

Clustering(8) Variable = PTEN MUTATION ANALYSIS
D8V1, survival
                sevent
clus2             0  1
  PTEN MUTATED    6  7
  PTEN WILD-TYPE 67 78
  PTEN MUTATED PTEN WILD-TYPE 
            13            145 
  PTEN MUTATED PTEN WILD-TYPE 
             7             78 
$`PTEN MUTATED`
TCGA-D3-A1Q7 TCGA-D3-A2J8 TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-EE-A17Z TCGA-EE-A29P 
      121.22        65.49        12.10        58.03         8.65        56.42 
TCGA-EE-A2GN TCGA-EE-A2GS TCGA-EE-A2GU TCGA-EE-A3AH TCGA-ER-A19J TCGA-FS-A1ZD 
       90.94        55.59        67.13       138.77         6.41        53.52 
TCGA-FW-A3I3 
        0.20 

$`PTEN WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.57       112.54        71.80        28.08        31.59        43.40 
TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF 
       23.77        11.87        48.76        71.24        60.23        24.53 
TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX 
        9.30        21.47       148.31        49.74         2.70         6.38 
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
       48.89        36.03       117.17        20.38       194.83       176.55 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB 
       35.93       107.34        61.18        53.92        65.92        23.44 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X 
       68.09        28.60        10.49       215.44        15.68        29.82 
TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F 
       33.73        14.70        26.86         4.93       109.64        78.87 
TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H 
      168.26        63.32        47.84        13.97        39.62        32.19 
TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
        2.56        44.35        18.58        37.35        14.47        55.89 
TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
      345.96        25.87        17.92        46.82        78.94        24.43 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE 
       39.25        58.75        47.54        43.23       314.53       135.91 
TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM 
      182.01        22.55        89.33        54.71        55.00        75.48 
TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GT TCGA-EE-A2M5 TCGA-EE-A2M6 
      101.95        13.87        14.30        19.56        21.67       129.24 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG 
       28.80        19.76        61.51        47.28       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM 
       16.96       204.62        96.23       144.76       203.01       167.87 
TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT 
       47.54       248.61        43.23       103.56       136.44        41.59 
TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE 
       53.26         4.24       122.73        25.84         3.68        26.73 
TCGA-EE-A3AF TCGA-EE-A3AG TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19L TCGA-ER-A19N 
       13.81        23.47        12.59        26.37       131.08        44.05 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 
       79.99        80.32       216.92        48.59       228.59       202.62 
TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC 
       20.91        28.08         7.76        27.68        48.85       357.37 
TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK 
       40.27        15.45         9.70        32.71        47.38        23.93 
TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT 
      101.26        74.73       133.55        11.41       148.77        53.16 
TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-GN-A261 TCGA-GN-A262 
       26.56        49.48        27.06        27.02        76.41       120.46 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
      117.93        84.72        10.09        64.41        62.76        32.48 
TCGA-GN-A26D 
       39.58 

  PTEN MUTATED PTEN WILD-TYPE 
          0.20           2.56 
  PTEN MUTATED PTEN WILD-TYPE 
        138.77         357.37 
  PTEN MUTATED PTEN WILD-TYPE 
         56.42          47.28 
[1] "0.2 - 138.8 (56.4)" "2.6 - 357.4 (47.3)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" 
[1] "hr=" "1.2"
D8V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  PTEN MUTATED                    1             0
  PTEN WILD-TYPE                 21             1
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  PTEN MUTATED                                                                                          1
  PTEN WILD-TYPE                                                                                       31
                vv
clus             REGIONAL LYMPH NODE
  PTEN MUTATED                    11
  PTEN WILD-TYPE                  93
D8V3, multiclass
                                                                                          clus
vv                                                                                         PTEN MUTATED
  DISTANT METASTASIS                                                                                  1
  PRIMARY TUMOR                                                                                       0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            1
  REGIONAL LYMPH NODE                                                                                11
                                                                                          clus
vv                                                                                         PTEN WILD-TYPE
  DISTANT METASTASIS                                                                                   21
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             31
  REGIONAL LYMPH NODE                                                                                  93
D8V4, binary
                cls
clus              0  1
  PTEN MUTATED    6  7
  PTEN WILD-TYPE 54 92
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTEN MUTATED      6    7
  PTEN WILD-TYPE   54   92
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  FEMALE            6             54
  MALE              7             92
                vv
clus              M0  M1 M1A M1B M1C
  PTEN MUTATED    11   2   0   0   0
  PTEN WILD-TYPE 127   0   1   2   2
D8V5, multiclass
                vv
clus             N0 N1 N1A N1B N2A N2B N2C N3 NX
  PTEN MUTATED   11  0   0   0   0   1   0  1  0
  PTEN WILD-TYPE 76  2   7  15   4   9   5 13  2
D8V6, multiclass
D8V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  PTEN MUTATED             0       0        1        4        1         2
  PTEN WILD-TYPE           3      17        9        8       17         5
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  PTEN MUTATED           1         1         0          0          0          1
  PTEN WILD-TYPE         8         6         7          6         17         20
                vv
clus             STAGE IV
  PTEN MUTATED          2
  PTEN WILD-TYPE        3
D8V8, multiclass

Clustering(9) Variable = RAC1 MUTATION ANALYSIS
D9V1, survival
                sevent
clus2             0  1
  RAC1 MUTATED    3  8
  RAC1 WILD-TYPE 70 77
  RAC1 MUTATED RAC1 WILD-TYPE 
            11            147 
  RAC1 MUTATED RAC1 WILD-TYPE 
             8             77 
$`RAC1 MUTATED`
TCGA-EE-A181 TCGA-EE-A29D TCGA-EE-A2GM TCGA-EE-A2M5 TCGA-EE-A3AB TCGA-ER-A1A1 
       33.73        13.97        75.48        21.67       122.73        79.99 
TCGA-FS-A1ZA TCGA-FS-A1ZK TCGA-FS-A1ZP TCGA-FS-A1ZU TCGA-GN-A266 
       27.68        23.93        74.73        26.56        10.09 

$`RAC1 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW 
      148.31        49.74         2.70         6.38        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       61.18        53.92        65.92        23.44        68.09        28.60 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 
       10.49       215.44        15.68        29.82         8.65        14.70 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A 
       26.86         4.93       109.64        78.87       168.26        63.32 
TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N 
       47.84        39.62        32.19         2.56        44.35        18.58 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V 
       56.42        37.35        14.47        55.89       345.96        25.87 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
       17.92        46.82        78.94        24.43        39.25        58.75 
TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI 
       47.54        43.23       314.53       135.91       182.01        22.55 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP 
       89.33        54.71        55.00        90.94       101.95        13.87 
TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2M7 
       14.30        55.59        19.56        67.13       129.24        28.80 
TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH 
       19.76        61.51        47.28       103.27       103.17        16.96 
TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN 
      204.62        96.23       144.76       203.01       167.87        47.54 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU 
      248.61        43.23       103.56       136.44        41.59        53.26 
TCGA-EE-A3AA TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG 
        4.24        25.84         3.68        26.73        13.81        23.47 
TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N 
      138.77        12.59        26.37         6.41       131.08        44.05 
TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 
       80.32       216.92        48.59       228.59       202.62        20.91 
TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE 
       28.08         7.76        48.85       357.37        53.52        40.27 
TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZM TCGA-FS-A1ZQ 
       15.45         9.70        32.71        47.38       101.26       133.55 
TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ 
       11.41       148.77        53.16        49.48        27.06        27.02 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 
        0.20        76.41       120.46       117.93        84.72        64.41 
TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       62.76        32.48        39.58 

  RAC1 MUTATED RAC1 WILD-TYPE 
         10.09           0.20 
  RAC1 MUTATED RAC1 WILD-TYPE 
        122.73         357.37 
  RAC1 MUTATED RAC1 WILD-TYPE 
         27.68          47.84 
[1] "10.1 - 122.7 (27.7)" "0.2 - 357.4 (47.8)" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"RAC1 WILD-TYPE"   "RAC1 MUTATED" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE"   "RAC1 MUTATED" "RAC1 WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"RAC1 WILD-TYPE"   "RAC1 MUTATED" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"RAC1 WILD-TYPE"   "RAC1 MUTATED" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE"   "RAC1 MUTATED" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE"   "RAC1 MUTATED" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
  "RAC1 MUTATED" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"RAC1 WILD-TYPE"   "RAC1 MUTATED" "RAC1 WILD-TYPE"   "RAC1 MUTATED" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
  "RAC1 MUTATED" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"RAC1 WILD-TYPE"   "RAC1 MUTATED" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"RAC1 WILD-TYPE"   "RAC1 MUTATED" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE"   "RAC1 MUTATED" "RAC1 WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"RAC1 WILD-TYPE"   "RAC1 MUTATED" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"RAC1 WILD-TYPE"   "RAC1 MUTATED" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE"   "RAC1 MUTATED" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE"   "RAC1 MUTATED" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
  "RAC1 MUTATED" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"RAC1 WILD-TYPE"   "RAC1 MUTATED" "RAC1 WILD-TYPE"   "RAC1 MUTATED" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
  "RAC1 MUTATED" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"RAC1 WILD-TYPE"   "RAC1 MUTATED" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"RAC1 WILD-TYPE"   "RAC1 MUTATED" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE"   "RAC1 MUTATED" "RAC1 WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"RAC1 WILD-TYPE"   "RAC1 MUTATED" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"RAC1 WILD-TYPE"   "RAC1 MUTATED" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE"   "RAC1 MUTATED" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE"   "RAC1 MUTATED" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
  "RAC1 MUTATED" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"RAC1 WILD-TYPE"   "RAC1 MUTATED" "RAC1 WILD-TYPE"   "RAC1 MUTATED" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
  "RAC1 MUTATED" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"RAC1 WILD-TYPE"   "RAC1 MUTATED" "RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"RAC1 WILD-TYPE" "RAC1 WILD-TYPE" 
[1] "hr=" "1.9"
D9V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  RAC1 MUTATED                    3             0
  RAC1 WILD-TYPE                 19             1
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  RAC1 MUTATED                                                                                          2
  RAC1 WILD-TYPE                                                                                       30
                vv
clus             REGIONAL LYMPH NODE
  RAC1 MUTATED                     6
  RAC1 WILD-TYPE                  98
D9V3, multiclass
                                                                                          clus
vv                                                                                         RAC1 MUTATED
  DISTANT METASTASIS                                                                                  3
  PRIMARY TUMOR                                                                                       0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            2
  REGIONAL LYMPH NODE                                                                                 6
                                                                                          clus
vv                                                                                         RAC1 WILD-TYPE
  DISTANT METASTASIS                                                                                   19
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             30
  REGIONAL LYMPH NODE                                                                                  98
D9V4, binary
                cls
clus              0  1
  RAC1 MUTATED    4  7
  RAC1 WILD-TYPE 56 92
[1] "tbl2"
                cls
clus             [,1] [,2]
  RAC1 MUTATED      4    7
  RAC1 WILD-TYPE   56   92
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  FEMALE            4             56
  MALE              7             92
                vv
clus              M0  M1 M1A M1B M1C
  RAC1 MUTATED     9   0   0   0   0
  RAC1 WILD-TYPE 129   2   1   2   2
D9V5, multiclass
                vv
clus             N0 N1 N1A N1B N2A N2B N2C N3 NX
  RAC1 MUTATED    6  0   0   1   0   0   1  1  0
  RAC1 WILD-TYPE 81  2   7  14   4  10   4 13  2
D9V6, multiclass
D9V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  RAC1 MUTATED             0       1        0        0        3         0
  RAC1 WILD-TYPE           3      16       10       12       15         7
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  RAC1 MUTATED           0         2         0          0          1          2
  RAC1 WILD-TYPE         9         5         7          6         16         19
                vv
clus             STAGE IV
  RAC1 MUTATED          0
  RAC1 WILD-TYPE        5
D9V8, multiclass

Clustering(10) Variable = ACSM2B MUTATION ANALYSIS
D10V1, survival
                  sevent
clus2               0  1
  ACSM2B MUTATED   13 16
  ACSM2B WILD-TYPE 60 69
  ACSM2B MUTATED ACSM2B WILD-TYPE 
              29              129 
  ACSM2B MUTATED ACSM2B WILD-TYPE 
              16               69 
$`ACSM2B MUTATED`
TCGA-D3-A2JF TCGA-D9-A1JW TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A20H TCGA-EE-A29A 
       48.76         2.70        14.70        26.86       168.26        63.32 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29V 
       47.84        13.97        39.62         2.56        44.35        25.87 
TCGA-EE-A2GC TCGA-EE-A2GI TCGA-EE-A2GM TCGA-EE-A2GT TCGA-EE-A2M5 TCGA-EE-A2MG 
       43.23        22.55        75.48        19.56        21.67       103.17 
TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MM TCGA-EE-A2MT TCGA-EE-A3AD 
       16.96       204.62        96.23       167.87        41.59         3.68 
TCGA-EE-A3AG TCGA-ER-A1A1 TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-GN-A267 
       23.47        79.99       133.55        11.41        64.41 

$`ACSM2B WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       43.40        65.49        23.77        11.87        12.10        58.03 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
       71.24        60.23        24.53         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
       49.74         6.38        48.89        36.03       117.17        20.38 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
      194.83       176.55        35.93       107.34        61.18        53.92 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       65.92        23.44        68.09        28.60        10.49       215.44 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A185 TCGA-EE-A20B 
       15.68        29.82         8.65        33.73         4.93       109.64 
TCGA-EE-A20F TCGA-EE-A29H TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
       78.87        32.19        18.58        56.42        37.35        14.47 
TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
       55.89       345.96        17.92        46.82        78.94        24.43 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH 
       39.25        58.75        47.54       314.53       135.91       182.01 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP 
       89.33        54.71        55.00        90.94       101.95        13.87 
TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 
       14.30        55.59        67.13       129.24        28.80        19.76 
TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MN 
       61.51        47.28       103.27       144.76       203.01        47.54 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MU TCGA-EE-A3AA 
      248.61        43.23       103.56       136.44        53.26         4.24 
TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AH TCGA-ER-A19D 
      122.73        25.84        26.73        13.81       138.77        12.59 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A3ET TCGA-FS-A1YW 
       26.37         6.41       131.08        44.05        80.32       216.92 
TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 
       48.59       228.59       202.62        20.91        28.08         7.76 
TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF 
       27.68        48.85       357.37        53.52        40.27        15.45 
TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP 
        9.70        32.71        47.38        23.93       101.26        74.73 
TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ 
      148.77        53.16        26.56        49.48        27.06        27.02 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        0.20        76.41       120.46       117.93        84.72        10.09 
TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       62.76        32.48        39.58 

  ACSM2B MUTATED ACSM2B WILD-TYPE 
            2.56             0.20 
  ACSM2B MUTATED ACSM2B WILD-TYPE 
          204.62           357.37 
  ACSM2B MUTATED ACSM2B WILD-TYPE 
           41.59            48.85 
[1] "2.6 - 204.6 (41.6)" "0.2 - 357.4 (48.9)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
  "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED"   "ACSM2B MUTATED" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
  "ACSM2B MUTATED"   "ACSM2B MUTATED"   "ACSM2B MUTATED"   "ACSM2B MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
  "ACSM2B MUTATED"   "ACSM2B MUTATED"   "ACSM2B MUTATED"   "ACSM2B MUTATED" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
  "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
  "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
  "ACSM2B MUTATED"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
  "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED"   "ACSM2B MUTATED" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
  "ACSM2B MUTATED"   "ACSM2B MUTATED"   "ACSM2B MUTATED"   "ACSM2B MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
  "ACSM2B MUTATED"   "ACSM2B MUTATED"   "ACSM2B MUTATED"   "ACSM2B MUTATED" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
  "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
  "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
  "ACSM2B MUTATED"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
  "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED"   "ACSM2B MUTATED" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
  "ACSM2B MUTATED"   "ACSM2B MUTATED"   "ACSM2B MUTATED"   "ACSM2B MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
  "ACSM2B MUTATED"   "ACSM2B MUTATED"   "ACSM2B MUTATED"   "ACSM2B MUTATED" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
  "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
  "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
  "ACSM2B MUTATED"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
[1] "hr=" "1.3"
D10V2, continuous
                  vv
clus               DISTANT METASTASIS PRIMARY TUMOR
  ACSM2B MUTATED                    6             1
  ACSM2B WILD-TYPE                 16             0
                  vv
clus               REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  ACSM2B MUTATED                                                                                          3
  ACSM2B WILD-TYPE                                                                                       29
                  vv
clus               REGIONAL LYMPH NODE
  ACSM2B MUTATED                    19
  ACSM2B WILD-TYPE                  85
D10V3, multiclass
                                                                                          clus
vv                                                                                         ACSM2B MUTATED
  DISTANT METASTASIS                                                                                    6
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              3
  REGIONAL LYMPH NODE                                                                                  19
                                                                                          clus
vv                                                                                         ACSM2B WILD-TYPE
  DISTANT METASTASIS                                                                                     16
  PRIMARY TUMOR                                                                                           0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               29
  REGIONAL LYMPH NODE                                                                                    85
D10V4, binary
                  cls
clus                0  1
  ACSM2B MUTATED    4 25
  ACSM2B WILD-TYPE 56 74
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACSM2B MUTATED      4   25
  ACSM2B WILD-TYPE   56   74
        clus
vv       ACSM2B MUTATED ACSM2B WILD-TYPE
  FEMALE              4               56
  MALE               25               74
                  vv
clus                M0  M1 M1A M1B M1C
  ACSM2B MUTATED    27   0   0   0   0
  ACSM2B WILD-TYPE 111   2   1   2   2
D10V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2A N2B N2C N3 NX
  ACSM2B MUTATED   18  0   2   4   1   0   0  2  0
  ACSM2B WILD-TYPE 69  2   5  11   3  10   5 12  2
D10V6, multiclass
D10V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  ACSM2B MUTATED             1       5        2        3        3         1
  ACSM2B WILD-TYPE           2      12        8        9       15         6
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  ACSM2B MUTATED           2         1         0          2          1
  ACSM2B WILD-TYPE         7         6         7          4         16
                  vv
clus               STAGE IIIC STAGE IV
  ACSM2B MUTATED            5        0
  ACSM2B WILD-TYPE         16        5
D10V8, multiclass

Clustering(11) Variable = CADM2 MUTATION ANALYSIS
D11V1, survival
                 sevent
clus2              0  1
  CADM2 MUTATED   10  7
  CADM2 WILD-TYPE 63 78
  CADM2 MUTATED CADM2 WILD-TYPE 
             17             141 
  CADM2 MUTATED CADM2 WILD-TYPE 
              7              78 
$`CADM2 MUTATED`
TCGA-D3-A2JF TCGA-D3-A3MV TCGA-D9-A149 TCGA-DA-A1HY TCGA-EE-A20H TCGA-EE-A29D 
       48.76        21.47        49.74       117.17       168.26        13.97 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A2A2 TCGA-EE-A2GB TCGA-EE-A2GM TCGA-EE-A2M5 
       39.62        32.19        24.43        47.54        75.48        21.67 
TCGA-EE-A2MG TCGA-EE-A2MI TCGA-FS-A1ZA TCGA-FS-A1ZE TCGA-GN-A268 
      103.17       204.62        27.68        40.27        62.76 

$`CADM2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       43.40        65.49        23.77        11.87        12.10        58.03 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D9-A148 TCGA-D9-A1JW 
       71.24        60.23        24.53         9.30       148.31         2.70 
TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
        6.38        48.89        36.03        20.38       194.83       176.55 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB 
       35.93       107.34        61.18        53.92        65.92        23.44 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X 
       68.09        28.60        10.49       215.44        15.68        29.82 
TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
        8.65        33.73        14.70        26.86         4.93       109.64 
TCGA-EE-A20F TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N 
       78.87        63.32        47.84         2.56        44.35        18.58 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V 
       56.42        37.35        14.47        55.89       345.96        25.87 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GC 
       17.92        46.82        78.94        39.25        58.75        43.23 
TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK 
      314.53       135.91       182.01        22.55        89.33        54.71 
TCGA-EE-A2GL TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS 
       55.00        90.94       101.95        13.87        14.30        55.59 
TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC 
       19.56        67.13       129.24        28.80        19.76        61.51 
TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MH TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML 
       47.28       103.27        16.96        96.23       144.76       203.01 
TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS 
      167.87        47.54       248.61        43.23       103.56       136.44 
TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD 
       41.59        53.26         4.24       122.73        25.84         3.68 
TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F 
       26.73        13.81        23.47       138.77        12.59        26.37 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW 
        6.41       131.08        44.05        79.99        80.32       216.92 
TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 
       48.59       228.59       202.62        20.91        28.08         7.76 
TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH 
       48.85       357.37        53.52        15.45         9.70        32.71 
TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR 
       47.38        23.93       101.26        74.73       133.55        11.41 
TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ 
      148.77        53.16        26.56        49.48        27.06        27.02 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        0.20        76.41       120.46       117.93        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A26A TCGA-GN-A26D 
       64.41        32.48        39.58 

  CADM2 MUTATED CADM2 WILD-TYPE 
          13.97            0.20 
  CADM2 MUTATED CADM2 WILD-TYPE 
         204.62          357.37 
  CADM2 MUTATED CADM2 WILD-TYPE 
          47.54           47.54 
[1] "14.0 - 204.6 (47.5)" "0.2 - 357.4 (47.5)" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE"   "CADM2 MUTATED" "CADM2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"CADM2 WILD-TYPE"   "CADM2 MUTATED" "CADM2 WILD-TYPE"   "CADM2 MUTATED" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
  "CADM2 MUTATED" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE"   "CADM2 MUTATED" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE"   "CADM2 MUTATED"   "CADM2 MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
  "CADM2 MUTATED" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"CADM2 WILD-TYPE"   "CADM2 MUTATED" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
  "CADM2 MUTATED" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"CADM2 WILD-TYPE"   "CADM2 MUTATED" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"CADM2 WILD-TYPE"   "CADM2 MUTATED" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
  "CADM2 MUTATED" "CADM2 WILD-TYPE"   "CADM2 MUTATED" "CADM2 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
  "CADM2 MUTATED" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
  "CADM2 MUTATED" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE"   "CADM2 MUTATED" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE"   "CADM2 MUTATED" "CADM2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"CADM2 WILD-TYPE"   "CADM2 MUTATED" "CADM2 WILD-TYPE"   "CADM2 MUTATED" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
  "CADM2 MUTATED" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE"   "CADM2 MUTATED" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE"   "CADM2 MUTATED"   "CADM2 MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
  "CADM2 MUTATED" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"CADM2 WILD-TYPE"   "CADM2 MUTATED" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
  "CADM2 MUTATED" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"CADM2 WILD-TYPE"   "CADM2 MUTATED" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"CADM2 WILD-TYPE"   "CADM2 MUTATED" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
  "CADM2 MUTATED" "CADM2 WILD-TYPE"   "CADM2 MUTATED" "CADM2 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
  "CADM2 MUTATED" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
  "CADM2 MUTATED" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE"   "CADM2 MUTATED" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE"   "CADM2 MUTATED" "CADM2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"CADM2 WILD-TYPE"   "CADM2 MUTATED" "CADM2 WILD-TYPE"   "CADM2 MUTATED" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
  "CADM2 MUTATED" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE"   "CADM2 MUTATED" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE"   "CADM2 MUTATED"   "CADM2 MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
  "CADM2 MUTATED" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"CADM2 WILD-TYPE"   "CADM2 MUTATED" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
  "CADM2 MUTATED" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"CADM2 WILD-TYPE"   "CADM2 MUTATED" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"CADM2 WILD-TYPE"   "CADM2 MUTATED" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
  "CADM2 MUTATED" "CADM2 WILD-TYPE"   "CADM2 MUTATED" "CADM2 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
  "CADM2 MUTATED" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
  "CADM2 MUTATED" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" "CADM2 WILD-TYPE"   "CADM2 MUTATED" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"CADM2 WILD-TYPE" "CADM2 WILD-TYPE" 
[1] "hr=" "1.3"
D11V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  CADM2 MUTATED                    4             0
  CADM2 WILD-TYPE                 18             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  CADM2 MUTATED                                                                                          3
  CADM2 WILD-TYPE                                                                                       29
                 vv
clus              REGIONAL LYMPH NODE
  CADM2 MUTATED                    10
  CADM2 WILD-TYPE                  94
D11V3, multiclass
                                                                                          clus
vv                                                                                         CADM2 MUTATED
  DISTANT METASTASIS                                                                                   4
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             3
  REGIONAL LYMPH NODE                                                                                 10
                                                                                          clus
vv                                                                                         CADM2 WILD-TYPE
  DISTANT METASTASIS                                                                                    18
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              29
  REGIONAL LYMPH NODE                                                                                   94
D11V4, binary
                 cls
clus               0  1
  CADM2 MUTATED    6 11
  CADM2 WILD-TYPE 54 88
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CADM2 MUTATED      6   11
  CADM2 WILD-TYPE   54   88
        clus
vv       CADM2 MUTATED CADM2 WILD-TYPE
  FEMALE             6              54
  MALE              11              88
                 vv
clus               M0  M1 M1A M1B M1C
  CADM2 MUTATED    17   0   0   0   0
  CADM2 WILD-TYPE 121   2   1   2   2
D11V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2A N2B N2C N3 NX
  CADM2 MUTATED    9  0   1   4   1   0   1  1  0
  CADM2 WILD-TYPE 78  2   6  11   3  10   4 13  2
D11V6, multiclass
D11V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  CADM2 MUTATED             0       3        2        0        0         0
  CADM2 WILD-TYPE           3      14        8       12       18         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  CADM2 MUTATED           2         2         0          1          4
  CADM2 WILD-TYPE         7         5         7          5         13
                 vv
clus              STAGE IIIC STAGE IV
  CADM2 MUTATED            2        0
  CADM2 WILD-TYPE         19        5
D11V8, multiclass

Clustering(12) Variable = OR51S1 MUTATION ANALYSIS
D12V1, survival
                  sevent
clus2               0  1
  OR51S1 MUTATED    8  8
  OR51S1 WILD-TYPE 65 77
  OR51S1 MUTATED OR51S1 WILD-TYPE 
              16              142 
  OR51S1 MUTATED OR51S1 WILD-TYPE 
               8               77 
$`OR51S1 MUTATED`
TCGA-EE-A183 TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A2GC TCGA-EE-A2GI 
       26.86        32.19        44.35        18.58        43.23        22.55 
TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2MS TCGA-EE-A2MT 
      101.95        13.87        96.23       144.76       136.44        41.59 
TCGA-FS-A1Z3 TCGA-FS-A1ZK TCGA-GN-A266 TCGA-GN-A268 
       20.91        23.93        10.09        62.76 

$`OR51S1 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW 
      148.31        49.74         2.70         6.38        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       61.18        53.92        65.92        23.44        68.09        28.60 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
       10.49       215.44        15.68        29.82         8.65        33.73 
TCGA-EE-A182 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A 
       14.70         4.93       109.64        78.87       168.26        63.32 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29P TCGA-EE-A29Q 
       47.84        13.97        39.62         2.56        56.42        37.35 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
       14.47        55.89       345.96        25.87        17.92        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GD 
       78.94        24.43        39.25        58.75        47.54       314.53 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM 
      135.91       182.01        89.33        54.71        55.00        75.48 
TCGA-EE-A2GN TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 
       90.94        14.30        55.59        19.56        67.13        21.67 
TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME 
      129.24        28.80        19.76        61.51        47.28       103.27 
TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN 
      103.17        16.96       204.62       203.01       167.87        47.54 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB 
      248.61        43.23       103.56        53.26         4.24       122.73 
TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH 
       25.84         3.68        26.73        13.81        23.47       138.77 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 
       12.59        26.37         6.41       131.08        44.05        79.99 
TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z4 
       80.32       216.92        48.59       228.59       202.62        28.08 
TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE 
        7.76        27.68        48.85       357.37        53.52        40.27 
TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZM TCGA-FS-A1ZP 
       15.45         9.70        32.71        47.38       101.26        74.73 
TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW 
      133.55        11.41       148.77        53.16        26.56        49.48 
TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
       27.06        27.02         0.20        76.41       120.46       117.93 
TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A26A TCGA-GN-A26D 
       84.72        64.41        32.48        39.58 

  OR51S1 MUTATED OR51S1 WILD-TYPE 
           10.09             0.20 
  OR51S1 MUTATED OR51S1 WILD-TYPE 
          144.76           357.37 
  OR51S1 MUTATED OR51S1 WILD-TYPE 
          36.890           48.675 
[1] "10.1 - 144.8 (36.9)" "0.2 - 357.4 (48.7)" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE"   "OR51S1 MUTATED" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
  "OR51S1 MUTATED" "OR51S1 WILD-TYPE"   "OR51S1 MUTATED"   "OR51S1 MUTATED" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"OR51S1 WILD-TYPE"   "OR51S1 MUTATED" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"OR51S1 WILD-TYPE"   "OR51S1 MUTATED" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE"   "OR51S1 MUTATED" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
  "OR51S1 MUTATED" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE"   "OR51S1 MUTATED" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
  "OR51S1 MUTATED" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE"   "OR51S1 MUTATED" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
  "OR51S1 MUTATED" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"OR51S1 WILD-TYPE"   "OR51S1 MUTATED" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"OR51S1 WILD-TYPE"   "OR51S1 MUTATED" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"OR51S1 WILD-TYPE"   "OR51S1 MUTATED" "OR51S1 WILD-TYPE"   "OR51S1 MUTATED" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE"   "OR51S1 MUTATED" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
  "OR51S1 MUTATED" "OR51S1 WILD-TYPE"   "OR51S1 MUTATED"   "OR51S1 MUTATED" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"OR51S1 WILD-TYPE"   "OR51S1 MUTATED" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"OR51S1 WILD-TYPE"   "OR51S1 MUTATED" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE"   "OR51S1 MUTATED" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
  "OR51S1 MUTATED" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE"   "OR51S1 MUTATED" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
  "OR51S1 MUTATED" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE"   "OR51S1 MUTATED" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
  "OR51S1 MUTATED" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"OR51S1 WILD-TYPE"   "OR51S1 MUTATED" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"OR51S1 WILD-TYPE"   "OR51S1 MUTATED" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"OR51S1 WILD-TYPE"   "OR51S1 MUTATED" "OR51S1 WILD-TYPE"   "OR51S1 MUTATED" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE"   "OR51S1 MUTATED" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
  "OR51S1 MUTATED" "OR51S1 WILD-TYPE"   "OR51S1 MUTATED"   "OR51S1 MUTATED" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"OR51S1 WILD-TYPE"   "OR51S1 MUTATED" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"OR51S1 WILD-TYPE"   "OR51S1 MUTATED" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE"   "OR51S1 MUTATED" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
  "OR51S1 MUTATED" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE"   "OR51S1 MUTATED" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
  "OR51S1 MUTATED" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE"   "OR51S1 MUTATED" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
  "OR51S1 MUTATED" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"OR51S1 WILD-TYPE"   "OR51S1 MUTATED" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"OR51S1 WILD-TYPE"   "OR51S1 MUTATED" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"OR51S1 WILD-TYPE"   "OR51S1 MUTATED" "OR51S1 WILD-TYPE"   "OR51S1 MUTATED" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"OR51S1 WILD-TYPE" "OR51S1 WILD-TYPE" 
[1] "hr=" "1.2"
D12V2, continuous
                  vv
clus               DISTANT METASTASIS PRIMARY TUMOR
  OR51S1 MUTATED                    2             1
  OR51S1 WILD-TYPE                 20             0
                  vv
clus               REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  OR51S1 MUTATED                                                                                          3
  OR51S1 WILD-TYPE                                                                                       29
                  vv
clus               REGIONAL LYMPH NODE
  OR51S1 MUTATED                    10
  OR51S1 WILD-TYPE                  94
D12V3, multiclass
                                                                                          clus
vv                                                                                         OR51S1 MUTATED
  DISTANT METASTASIS                                                                                    2
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              3
  REGIONAL LYMPH NODE                                                                                  10
                                                                                          clus
vv                                                                                         OR51S1 WILD-TYPE
  DISTANT METASTASIS                                                                                     20
  PRIMARY TUMOR                                                                                           0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               29
  REGIONAL LYMPH NODE                                                                                    94
D12V4, binary
                  cls
clus                0  1
  OR51S1 MUTATED    6 10
  OR51S1 WILD-TYPE 54 89
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR51S1 MUTATED      6   10
  OR51S1 WILD-TYPE   54   89
        clus
vv       OR51S1 MUTATED OR51S1 WILD-TYPE
  FEMALE              6               54
  MALE               10               89
                  vv
clus                M0  M1 M1A M1B M1C
  OR51S1 MUTATED    14   0   0   0   0
  OR51S1 WILD-TYPE 124   2   1   2   2
D12V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2A N2B N2C N3 NX
  OR51S1 MUTATED   13  0   1   0   0   0   0  0  0
  OR51S1 WILD-TYPE 74  2   6  15   4  10   5 14  2
D12V6, multiclass
D12V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  OR51S1 MUTATED             0       1        2        2        5         0
  OR51S1 WILD-TYPE           3      16        8       10       13         7
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  OR51S1 MUTATED           2         0         0          0          1
  OR51S1 WILD-TYPE         7         7         7          6         16
                  vv
clus               STAGE IIIC STAGE IV
  OR51S1 MUTATED            0        0
  OR51S1 WILD-TYPE         21        5
D12V8, multiclass

Clustering(13) Variable = LCE1B MUTATION ANALYSIS
D13V1, survival
                 sevent
clus2              0  1
  LCE1B MUTATED    3  7
  LCE1B WILD-TYPE 70 78
  LCE1B MUTATED LCE1B WILD-TYPE 
             10             148 
  LCE1B MUTATED LCE1B WILD-TYPE 
              7              78 
$`LCE1B MUTATED`
TCGA-EE-A185 TCGA-EE-A29M TCGA-EE-A29T TCGA-EE-A2GP TCGA-EE-A2GU TCGA-EE-A2MD 
        4.93        44.35       345.96        13.87        67.13        47.28 
TCGA-EE-A2MH TCGA-EE-A2MI TCGA-FS-A1ZZ TCGA-GN-A266 
       16.96       204.62        27.02        10.09 

$`LCE1B WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW 
      148.31        49.74         2.70         6.38        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       61.18        53.92        65.92        23.44        68.09        28.60 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
       10.49       215.44        15.68        29.82         8.65        33.73 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A 
       14.70        26.86       109.64        78.87       168.26        63.32 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N 
       47.84        13.97        39.62        32.19         2.56        18.58 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X 
       56.42        37.35        14.47        55.89        25.87        17.92 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB 
       46.82        78.94        24.43        39.25        58.75        47.54 
TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ 
       43.23       314.53       135.91       182.01        22.55        89.33 
TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GR 
       54.71        55.00        75.48        90.94       101.95        14.30 
TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 
       55.59        19.56        21.67       129.24        28.80        19.76 
TCGA-EE-A2MC TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML 
       61.51       103.27       103.17        96.23       144.76       203.01 
TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS 
      167.87        47.54       248.61        43.23       103.56       136.44 
TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD 
       41.59        53.26         4.24       122.73        25.84         3.68 
TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F 
       26.73        13.81        23.47       138.77        12.59        26.37 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW 
        6.41       131.08        44.05        79.99        80.32       216.92 
TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 
       48.59       228.59       202.62        20.91        28.08         7.76 
TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF 
       27.68        48.85       357.37        53.52        40.27        15.45 
TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP 
        9.70        32.71        47.38        23.93       101.26        74.73 
TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW 
      133.55        11.41       148.77        53.16        26.56        49.48 
TCGA-FS-A1ZY TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
       27.06         0.20        76.41       120.46       117.93        84.72 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       64.41        62.76        32.48        39.58 

  LCE1B MUTATED LCE1B WILD-TYPE 
           4.93            0.20 
  LCE1B MUTATED LCE1B WILD-TYPE 
         345.96          357.37 
  LCE1B MUTATED LCE1B WILD-TYPE 
         35.685          48.215 
[1] "4.9 - 346.0 (35.7)" "0.2 - 357.4 (48.2)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
  "LCE1B MUTATED" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE"   "LCE1B MUTATED" "LCE1B WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
  "LCE1B MUTATED" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
  "LCE1B MUTATED" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
  "LCE1B MUTATED" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE"   "LCE1B MUTATED" "LCE1B WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"LCE1B WILD-TYPE"   "LCE1B MUTATED"   "LCE1B MUTATED" "LCE1B WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE"   "LCE1B MUTATED" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"LCE1B WILD-TYPE"   "LCE1B MUTATED" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
  "LCE1B MUTATED" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE"   "LCE1B MUTATED" "LCE1B WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
  "LCE1B MUTATED" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
  "LCE1B MUTATED" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
  "LCE1B MUTATED" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE"   "LCE1B MUTATED" "LCE1B WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"LCE1B WILD-TYPE"   "LCE1B MUTATED"   "LCE1B MUTATED" "LCE1B WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE"   "LCE1B MUTATED" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"LCE1B WILD-TYPE"   "LCE1B MUTATED" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
  "LCE1B MUTATED" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE"   "LCE1B MUTATED" "LCE1B WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
  "LCE1B MUTATED" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
  "LCE1B MUTATED" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
  "LCE1B MUTATED" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE"   "LCE1B MUTATED" "LCE1B WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"LCE1B WILD-TYPE"   "LCE1B MUTATED"   "LCE1B MUTATED" "LCE1B WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE"   "LCE1B MUTATED" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"LCE1B WILD-TYPE"   "LCE1B MUTATED" "LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"LCE1B WILD-TYPE" "LCE1B WILD-TYPE" 
[1] "hr=" "1.3"
D13V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  LCE1B MUTATED                    1             1
  LCE1B WILD-TYPE                 21             0
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  LCE1B MUTATED                                                                                          2
  LCE1B WILD-TYPE                                                                                       30
                 vv
clus              REGIONAL LYMPH NODE
  LCE1B MUTATED                     6
  LCE1B WILD-TYPE                  98
D13V3, multiclass
                                                                                          clus
vv                                                                                         LCE1B MUTATED
  DISTANT METASTASIS                                                                                   1
  PRIMARY TUMOR                                                                                        1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             2
  REGIONAL LYMPH NODE                                                                                  6
                                                                                          clus
vv                                                                                         LCE1B WILD-TYPE
  DISTANT METASTASIS                                                                                    21
  PRIMARY TUMOR                                                                                          0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              30
  REGIONAL LYMPH NODE                                                                                   98
D13V4, binary
                 cls
clus               0  1
  LCE1B MUTATED    5  5
  LCE1B WILD-TYPE 55 94
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LCE1B MUTATED      5    5
  LCE1B WILD-TYPE   55   94
        clus
vv       LCE1B MUTATED LCE1B WILD-TYPE
  FEMALE             5              55
  MALE               5              94
                 vv
clus               M0  M1 M1A M1B M1C
  LCE1B MUTATED     9   0   0   0   0
  LCE1B WILD-TYPE 129   2   1   2   2
D13V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2A N2B N2C N3 NX
  LCE1B MUTATED    6  0   1   0   0   0   0  1  1
  LCE1B WILD-TYPE 81  2   6  15   4  10   5 13  1
D13V6, multiclass
D13V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  LCE1B MUTATED             0       0        1        1        2         0
  LCE1B WILD-TYPE           3      17        9       11       16         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  LCE1B MUTATED           2         0         0          0          1
  LCE1B WILD-TYPE         7         7         7          6         16
                 vv
clus              STAGE IIIC STAGE IV
  LCE1B MUTATED            1        0
  LCE1B WILD-TYPE         20        5
D13V8, multiclass

Clustering(14) Variable = IDH1 MUTATION ANALYSIS
D14V1, survival
                sevent
clus2             0  1
  IDH1 MUTATED    4  3
  IDH1 WILD-TYPE 69 82
  IDH1 MUTATED IDH1 WILD-TYPE 
             7            151 
  IDH1 MUTATED IDH1 WILD-TYPE 
             3             82 
$`IDH1 MUTATED`
TCGA-D9-A149 TCGA-EE-A29A TCGA-EE-A29P TCGA-EE-A2GT TCGA-EE-A2GU TCGA-FS-A1ZP 
       49.74        63.32        56.42        19.56        67.13        74.73 
TCGA-GN-A268 
       62.76 

$`IDH1 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
      148.31         2.70         6.38        48.89        36.03       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
       20.38       194.83       176.55        35.93       107.34        61.18 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       53.92        65.92        23.44        68.09        28.60        10.49 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 
      215.44        15.68        29.82         8.65        33.73        14.70 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29C 
       26.86         4.93       109.64        78.87       168.26        47.84 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N 
       13.97        39.62        32.19         2.56        44.35        18.58 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X 
       37.35        14.47        55.89       345.96        25.87        17.92 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB 
       46.82        78.94        24.43        39.25        58.75        47.54 
TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ 
       43.23       314.53       135.91       182.01        22.55        89.33 
TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP 
       54.71        55.00        75.48        90.94       101.95        13.87 
TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 
       14.30        55.59        21.67       129.24        28.80        19.76 
TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI 
       61.51        47.28       103.27       103.17        16.96       204.62 
TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP 
       96.23       144.76       203.01       167.87        47.54       248.61 
TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA 
       43.23       103.56       136.44        41.59        53.26         4.24 
TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG 
      122.73        25.84         3.68        26.73        13.81        23.47 
TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N 
      138.77        12.59        26.37         6.41       131.08        44.05 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 
       79.99        80.32       216.92        48.59       228.59       202.62 
TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC 
       20.91        28.08         7.76        27.68        48.85       357.37 
TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ 
       53.52        40.27        15.45         9.70        32.71        47.38 
TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT 
       23.93       101.26       133.55        11.41       148.77        53.16 
TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 
       26.56        49.48        27.06        27.02         0.20        76.41 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A26A 
      120.46       117.93        84.72        10.09        64.41        32.48 
TCGA-GN-A26D 
       39.58 

  IDH1 MUTATED IDH1 WILD-TYPE 
         19.56           0.20 
  IDH1 MUTATED IDH1 WILD-TYPE 
         74.73         357.37 
  IDH1 MUTATED IDH1 WILD-TYPE 
         62.76          47.28 
[1] "19.6 - 74.7 (62.8)" "0.2 - 357.4 (47.3)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
  "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
  "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
  "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
  "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
  "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
  "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
  "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
  "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
  "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
[1] "hr=" "1.3"
D14V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  IDH1 MUTATED                    1             0
  IDH1 WILD-TYPE                 21             1
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  IDH1 MUTATED                                                                                          1
  IDH1 WILD-TYPE                                                                                       31
                vv
clus             REGIONAL LYMPH NODE
  IDH1 MUTATED                     5
  IDH1 WILD-TYPE                  99
D14V3, multiclass
                                                                                          clus
vv                                                                                         IDH1 MUTATED
  DISTANT METASTASIS                                                                                  1
  PRIMARY TUMOR                                                                                       0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            1
  REGIONAL LYMPH NODE                                                                                 5
                                                                                          clus
vv                                                                                         IDH1 WILD-TYPE
  DISTANT METASTASIS                                                                                   21
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             31
  REGIONAL LYMPH NODE                                                                                  99
D14V4, binary
                cls
clus              0  1
  IDH1 MUTATED    4  3
  IDH1 WILD-TYPE 56 96
[1] "tbl2"
                cls
clus             [,1] [,2]
  IDH1 MUTATED      4    3
  IDH1 WILD-TYPE   56   96
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  FEMALE            4             56
  MALE              3             96
                vv
clus              M0  M1 M1A M1B M1C
  IDH1 MUTATED     7   0   0   0   0
  IDH1 WILD-TYPE 131   2   1   2   2
D14V5, multiclass
                vv
clus             N0 N1 N1A N1B N2A N2B N2C N3 NX
  IDH1 MUTATED    5  0   1   1   0   0   0  0  0
  IDH1 WILD-TYPE 82  2   6  14   4  10   5 14  2
D14V6, multiclass
D14V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  IDH1 MUTATED             0       0        1        0        1         1
  IDH1 WILD-TYPE           3      17        9       12       17         6
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  IDH1 MUTATED           1         1         0          1          0          0
  IDH1 WILD-TYPE         8         6         7          5         17         21
                vv
clus             STAGE IV
  IDH1 MUTATED          0
  IDH1 WILD-TYPE        5
D14V8, multiclass

Clustering(15) Variable = TAF1A MUTATION ANALYSIS
D15V1, survival
                 sevent
clus2              0  1
  TAF1A MUTATED    2  9
  TAF1A WILD-TYPE 71 76
  TAF1A MUTATED TAF1A WILD-TYPE 
             11             147 
  TAF1A MUTATED TAF1A WILD-TYPE 
              9              76 
$`TAF1A MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A2JK TCGA-D3-A3CE TCGA-D9-A148 TCGA-EE-A2MD TCGA-EE-A2MT 
       16.57        12.10        60.23       148.31        47.28        41.59 
TCGA-FS-A1Z0 TCGA-FS-A1Z4 TCGA-FS-A1ZG TCGA-FS-A1ZJ TCGA-GN-A26A 
      202.62        28.08         9.70        47.38        32.48 

$`TAF1A WILD-TYPE`
TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
      112.54        71.80       121.22        28.08        31.59        43.40 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A3C6 TCGA-D3-A3CC 
       65.49        23.77        11.87        48.76        58.03        71.24 
TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX 
       24.53         9.30        21.47        49.74         2.70         6.38 
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
       48.89        36.03       117.17        20.38       194.83       176.55 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB 
       35.93       107.34        61.18        53.92        65.92        23.44 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X 
       68.09        28.60        10.49       215.44        15.68        29.82 
TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
        8.65        33.73        14.70        26.86         4.93       109.64 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
       78.87       168.26        63.32        47.84        13.97        39.62 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       32.19         2.56        44.35        18.58        56.42        37.35 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
       14.47        55.89       345.96        25.87        17.92        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC 
       78.94        24.43        39.25        58.75        47.54        43.23 
TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK 
      314.53       135.91       182.01        22.55        89.33        54.71 
TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR 
       55.00        75.48        90.94       101.95        13.87        14.30 
TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 
       55.59        19.56        67.13        21.67       129.24        28.80 
TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI 
       19.76        61.51       103.27       103.17        16.96       204.62 
TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP 
       96.23       144.76       203.01       167.87        47.54       248.61 
TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB 
       43.23       103.56       136.44        53.26         4.24       122.73 
TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH 
       25.84         3.68        26.73        13.81        23.47       138.77 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 
       12.59        26.37         6.41       131.08        44.05        79.99 
TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z3 TCGA-FS-A1Z7 
       80.32       216.92        48.59       228.59        20.91         7.76 
TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF 
       27.68        48.85       357.37        53.52        40.27        15.45 
TCGA-FS-A1ZH TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR 
       32.71        23.93       101.26        74.73       133.55        11.41 
TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ 
      148.77        53.16        26.56        49.48        27.06        27.02 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        0.20        76.41       120.46       117.93        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26D 
       64.41        62.76        39.58 

  TAF1A MUTATED TAF1A WILD-TYPE 
            9.7             0.2 
  TAF1A MUTATED TAF1A WILD-TYPE 
         202.62          357.37 
  TAF1A MUTATED TAF1A WILD-TYPE 
          41.59           48.59 
[1] "9.7 - 202.6 (41.6)" "0.2 - 357.4 (48.6)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
  "TAF1A MUTATED" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE"   "TAF1A MUTATED" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE"   "TAF1A MUTATED" "TAF1A WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE"   "TAF1A MUTATED" "TAF1A WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE"   "TAF1A MUTATED" "TAF1A WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
  "TAF1A MUTATED" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
  "TAF1A MUTATED" "TAF1A WILD-TYPE"   "TAF1A MUTATED" "TAF1A WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE"   "TAF1A MUTATED" "TAF1A WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
  "TAF1A MUTATED" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
  "TAF1A MUTATED" "TAF1A WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
  "TAF1A MUTATED" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE"   "TAF1A MUTATED" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE"   "TAF1A MUTATED" "TAF1A WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE"   "TAF1A MUTATED" "TAF1A WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE"   "TAF1A MUTATED" "TAF1A WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
  "TAF1A MUTATED" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
  "TAF1A MUTATED" "TAF1A WILD-TYPE"   "TAF1A MUTATED" "TAF1A WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE"   "TAF1A MUTATED" "TAF1A WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
  "TAF1A MUTATED" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
  "TAF1A MUTATED" "TAF1A WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
  "TAF1A MUTATED" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE"   "TAF1A MUTATED" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE"   "TAF1A MUTATED" "TAF1A WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE"   "TAF1A MUTATED" "TAF1A WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE"   "TAF1A MUTATED" "TAF1A WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
  "TAF1A MUTATED" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
  "TAF1A MUTATED" "TAF1A WILD-TYPE"   "TAF1A MUTATED" "TAF1A WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE"   "TAF1A MUTATED" "TAF1A WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
  "TAF1A MUTATED" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" "TAF1A WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
  "TAF1A MUTATED" "TAF1A WILD-TYPE" 
[1] "hr=" "1.9"
D15V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  TAF1A MUTATED                    1             0
  TAF1A WILD-TYPE                 21             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  TAF1A MUTATED                                                                                          1
  TAF1A WILD-TYPE                                                                                       31
                 vv
clus              REGIONAL LYMPH NODE
  TAF1A MUTATED                     9
  TAF1A WILD-TYPE                  95
D15V3, multiclass
                                                                                          clus
vv                                                                                         TAF1A MUTATED
  DISTANT METASTASIS                                                                                   1
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             1
  REGIONAL LYMPH NODE                                                                                  9
                                                                                          clus
vv                                                                                         TAF1A WILD-TYPE
  DISTANT METASTASIS                                                                                    21
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              31
  REGIONAL LYMPH NODE                                                                                   95
D15V4, binary
                 cls
clus               0  1
  TAF1A MUTATED    6  5
  TAF1A WILD-TYPE 54 94
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TAF1A MUTATED      6    5
  TAF1A WILD-TYPE   54   94
        clus
vv       TAF1A MUTATED TAF1A WILD-TYPE
  FEMALE             6              54
  MALE               5              94
                 vv
clus               M0  M1 M1A M1B M1C
  TAF1A MUTATED    10   0   0   1   0
  TAF1A WILD-TYPE 128   2   1   1   2
D15V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2A N2B N2C N3 NX
  TAF1A MUTATED    5  0   1   1   0   2   0  2  0
  TAF1A WILD-TYPE 82  2   6  14   4   8   5 12  2
D15V6, multiclass
D15V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  TAF1A MUTATED             0       2        1        1        1         0
  TAF1A WILD-TYPE           3      15        9       11       17         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  TAF1A MUTATED           0         0         1          1          0
  TAF1A WILD-TYPE         9         7         6          5         17
                 vv
clus              STAGE IIIC STAGE IV
  TAF1A MUTATED            3        0
  TAF1A WILD-TYPE         18        5
D15V8, multiclass

Clustering(16) Variable = NAP1L2 MUTATION ANALYSIS
D16V1, survival
                  sevent
clus2               0  1
  NAP1L2 MUTATED    6  8
  NAP1L2 WILD-TYPE 67 77
  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
              14              144 
  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
               8               77 
$`NAP1L2 MUTATED`
TCGA-D3-A2JD TCGA-D3-A3C6 TCGA-DA-A1HV TCGA-EE-A182 TCGA-EE-A20F TCGA-EE-A29D 
       11.87        58.03        48.89        14.70        78.87        13.97 
TCGA-EE-A29M TCGA-EE-A2GO TCGA-EE-A2GR TCGA-EE-A2MC TCGA-EE-A2MJ TCGA-EE-A2MT 
       44.35       101.95        14.30        61.51        96.23        41.59 
TCGA-FS-A1Z3 TCGA-FS-A1ZZ 
       20.91        27.02 

$`NAP1L2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3CC 
       43.40        65.49        23.77        48.76        12.10        71.24 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 TCGA-D9-A149 
       60.23        24.53         9.30        21.47       148.31        49.74 
TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.70         6.38        36.03       117.17        20.38       194.83 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
      176.55        35.93       107.34        61.18        53.92        65.92 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       23.44        68.09        28.60        10.49       215.44        15.68 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
       29.82         8.65        33.73        26.86         4.93       109.64 
TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L 
      168.26        63.32        47.84        39.62        32.19         2.56 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T 
       18.58        56.42        37.35        14.47        55.89       345.96 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
       25.87        17.92        46.82        78.94        24.43        39.25 
TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH 
       58.75        47.54        43.23       314.53       135.91       182.01 
TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN 
       22.55        89.33        54.71        55.00        75.48        90.94 
TCGA-EE-A2GP TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 
       13.87        55.59        19.56        67.13        21.67       129.24 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH 
       28.80        19.76        47.28       103.27       103.17        16.96 
TCGA-EE-A2MI TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP 
      204.62       144.76       203.01       167.87        47.54       248.61 
TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB 
       43.23       103.56       136.44        53.26         4.24       122.73 
TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH 
       25.84         3.68        26.73        13.81        23.47       138.77 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 
       12.59        26.37         6.41       131.08        44.05        79.99 
TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z4 
       80.32       216.92        48.59       228.59       202.62        28.08 
TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE 
        7.76        27.68        48.85       357.37        53.52        40.27 
TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM 
       15.45         9.70        32.71        47.38        23.93       101.26 
TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU 
       74.73       133.55        11.41       148.77        53.16        26.56 
TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
       49.48        27.06         0.20        76.41       120.46       117.93 
TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       84.72        10.09        64.41        62.76        32.48        39.58 

  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
           11.87             0.20 
  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
          101.95           357.37 
  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
           42.97            47.69 
[1] "11.9 - 102.0 (43.0)" "0.2 - 357.4 (47.7)" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
  "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
  "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
  "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
  "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
  "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
  "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE"   "NAP1L2 MUTATED" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
[1] "hr=" "1.5"
D16V2, continuous
                  vv
clus               DISTANT METASTASIS PRIMARY TUMOR
  NAP1L2 MUTATED                    3             1
  NAP1L2 WILD-TYPE                 19             0
                  vv
clus               REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  NAP1L2 MUTATED                                                                                          2
  NAP1L2 WILD-TYPE                                                                                       30
                  vv
clus               REGIONAL LYMPH NODE
  NAP1L2 MUTATED                     9
  NAP1L2 WILD-TYPE                  95
D16V3, multiclass
                                                                                          clus
vv                                                                                         NAP1L2 MUTATED
  DISTANT METASTASIS                                                                                    3
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              2
  REGIONAL LYMPH NODE                                                                                   9
                                                                                          clus
vv                                                                                         NAP1L2 WILD-TYPE
  DISTANT METASTASIS                                                                                     19
  PRIMARY TUMOR                                                                                           0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               30
  REGIONAL LYMPH NODE                                                                                    95
D16V4, binary
                  cls
clus                0  1
  NAP1L2 MUTATED    7  8
  NAP1L2 WILD-TYPE 53 91
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NAP1L2 MUTATED      7    8
  NAP1L2 WILD-TYPE   53   91
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  FEMALE              7               53
  MALE                8               91
                  vv
clus                M0  M1 M1A M1B M1C
  NAP1L2 MUTATED    14   0   0   0   0
  NAP1L2 WILD-TYPE 124   2   1   2   2
D16V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2A N2B N2C N3 NX
  NAP1L2 MUTATED    9  0   0   4   0   1   0  0  0
  NAP1L2 WILD-TYPE 78  2   7  11   4   9   5 14  2
D16V6, multiclass
D16V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  NAP1L2 MUTATED             0       1        0        3        4         0
  NAP1L2 WILD-TYPE           3      16       10        9       14         7
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  NAP1L2 MUTATED           1         0         0          0          2
  NAP1L2 WILD-TYPE         8         7         7          6         15
                  vv
clus               STAGE IIIC STAGE IV
  NAP1L2 MUTATED            3        0
  NAP1L2 WILD-TYPE         18        5
D16V8, multiclass

Clustering(17) Variable = MUC7 MUTATION ANALYSIS
D17V1, survival
                sevent
clus2             0  1
  MUC7 MUTATED    7  4
  MUC7 WILD-TYPE 66 81
  MUC7 MUTATED MUC7 WILD-TYPE 
            11            147 
  MUC7 MUTATED MUC7 WILD-TYPE 
             4             81 
$`MUC7 MUTATED`
TCGA-DA-A1IC TCGA-EE-A181 TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A2GC TCGA-EE-A2GJ 
       68.09        33.73        13.97        39.62        43.23        89.33 
TCGA-EE-A2GO TCGA-EE-A2MR TCGA-EE-A2MS TCGA-ER-A3ET TCGA-FS-A1ZK 
      101.95       103.56       136.44        80.32        23.93 

$`MUC7 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW 
      148.31        49.74         2.70         6.38        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F3 
       61.18        53.92        65.92        23.44        28.60        10.49 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 
      215.44        15.68        29.82         8.65        14.70        26.86 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.93       109.64        78.87       168.26        63.32        47.84 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       32.19         2.56        44.35        18.58        56.42        37.35 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
       14.47        55.89       345.96        25.87        17.92        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GD 
       78.94        24.43        39.25        58.75        47.54       314.53 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM 
      135.91       182.01        22.55        54.71        55.00        75.48 
TCGA-EE-A2GN TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU 
       90.94        13.87        14.30        55.59        19.56        67.13 
TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD 
       21.67       129.24        28.80        19.76        61.51        47.28 
TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK 
      103.27       103.17        16.96       204.62        96.23       144.76 
TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MT 
      203.01       167.87        47.54       248.61        43.23        41.59 
TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE 
       53.26         4.24       122.73        25.84         3.68        26.73 
TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       13.81        23.47       138.77        12.59        26.37         6.41 
TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY 
      131.08        44.05        79.99       216.92        48.59       228.59 
TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB 
      202.62        20.91        28.08         7.76        27.68        48.85 
TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH 
      357.37        53.52        40.27        15.45         9.70        32.71 
TCGA-FS-A1ZJ TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS 
       47.38       101.26        74.73       133.55        11.41       148.77 
TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 
       53.16        26.56        49.48        27.06        27.02         0.20 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 
       76.41       120.46       117.93        84.72        10.09        64.41 
TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       62.76        32.48        39.58 

  MUC7 MUTATED MUC7 WILD-TYPE 
         13.97           0.20 
  MUC7 MUTATED MUC7 WILD-TYPE 
        136.44         357.37 
  MUC7 MUTATED MUC7 WILD-TYPE 
         68.09          47.54 
[1] "14.0 - 136.4 (68.1)" "0.2 - 357.4 (47.5)" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED"   "MUC7 MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED"   "MUC7 MUTATED" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED"   "MUC7 MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED"   "MUC7 MUTATED" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED"   "MUC7 MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED"   "MUC7 MUTATED" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
[1] "hr=" "1.6"
D17V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  MUC7 MUTATED                    1             0
  MUC7 WILD-TYPE                 21             1
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  MUC7 MUTATED                                                                                          3
  MUC7 WILD-TYPE                                                                                       29
                vv
clus             REGIONAL LYMPH NODE
  MUC7 MUTATED                     7
  MUC7 WILD-TYPE                  97
D17V3, multiclass
                                                                                          clus
vv                                                                                         MUC7 MUTATED
  DISTANT METASTASIS                                                                                  1
  PRIMARY TUMOR                                                                                       0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            3
  REGIONAL LYMPH NODE                                                                                 7
                                                                                          clus
vv                                                                                         MUC7 WILD-TYPE
  DISTANT METASTASIS                                                                                   21
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             29
  REGIONAL LYMPH NODE                                                                                  97
D17V4, binary
                cls
clus              0  1
  MUC7 MUTATED    3  8
  MUC7 WILD-TYPE 57 91
[1] "tbl2"
                cls
clus             [,1] [,2]
  MUC7 MUTATED      3    8
  MUC7 WILD-TYPE   57   91
        clus
vv       MUC7 MUTATED MUC7 WILD-TYPE
  FEMALE            3             57
  MALE              8             91
                vv
clus              M0  M1 M1A M1B M1C
  MUC7 MUTATED    11   0   0   0   0
  MUC7 WILD-TYPE 127   2   1   2   2
D17V5, multiclass
                vv
clus             N0 N1 N1A N1B N2A N2B N2C N3 NX
  MUC7 MUTATED    7  0   1   2   0   0   1  0  0
  MUC7 WILD-TYPE 80  2   6  13   4  10   4 14  2
D17V6, multiclass
D17V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  MUC7 MUTATED             0       1        1        0        4         0
  MUC7 WILD-TYPE           3      16        9       12       14         7
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  MUC7 MUTATED           1         0         0          1          2          1
  MUC7 WILD-TYPE         8         7         7          5         15         20
                vv
clus             STAGE IV
  MUC7 MUTATED          0
  MUC7 WILD-TYPE        5
D17V8, multiclass

Clustering(18) Variable = PPP6C MUTATION ANALYSIS
D18V1, survival
                 sevent
clus2              0  1
  PPP6C MUTATED   10  4
  PPP6C WILD-TYPE 63 81
  PPP6C MUTATED PPP6C WILD-TYPE 
             14             144 
  PPP6C MUTATED PPP6C WILD-TYPE 
              4              81 
$`PPP6C MUTATED`
TCGA-D3-A3MV TCGA-DA-A1I1 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A29L TCGA-EE-A29R 
       21.47       194.83       215.44        15.68         2.56        14.47 
TCGA-EE-A2GD TCGA-EE-A2GM TCGA-EE-A2M6 TCGA-EE-A2ML TCGA-FS-A1ZC TCGA-FS-A1ZH 
      314.53        75.48       129.24       203.01       357.37        32.71 
TCGA-FS-A1ZW TCGA-GN-A267 
       49.48        64.41 

$`PPP6C WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D9-A148 
       58.03        71.24        60.23        24.53         9.30       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
       49.74         2.70         6.38        48.89        36.03       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       20.38       176.55        35.93       107.34        61.18        53.92 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-EE-A17X 
       65.92        23.44        68.09        28.60        10.49        29.82 
TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
        8.65        33.73        14.70        26.86         4.93       109.64 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
       78.87       168.26        63.32        47.84        13.97        39.62 
TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29S 
       32.19        44.35        18.58        56.42        37.35        55.89 
TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
      345.96        25.87        17.92        46.82        78.94        24.43 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GE TCGA-EE-A2GH 
       39.25        58.75        47.54        43.23       135.91       182.01 
TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GN TCGA-EE-A2GO 
       22.55        89.33        54.71        55.00        90.94       101.95 
TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 
       13.87        14.30        55.59        19.56        67.13        21.67 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG 
       28.80        19.76        61.51        47.28       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2MM TCGA-EE-A2MN 
       16.96       204.62        96.23       144.76       167.87        47.54 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU 
      248.61        43.23       103.56       136.44        41.59        53.26 
TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF 
        4.24       122.73        25.84         3.68        26.73        13.81 
TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
       23.47       138.77        12.59        26.37         6.41       131.08 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY 
       44.05        79.99        80.32       216.92        48.59       228.59 
TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB 
      202.62        20.91        28.08         7.76        27.68        48.85 
TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZJ TCGA-FS-A1ZK 
       53.52        40.27        15.45         9.70        47.38        23.93 
TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT 
      101.26        74.73       133.55        11.41       148.77        53.16 
TCGA-FS-A1ZU TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 
       26.56        27.06        27.02         0.20        76.41       120.46 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
      117.93        84.72        10.09        62.76        32.48        39.58 

  PPP6C MUTATED PPP6C WILD-TYPE 
           2.56            0.20 
  PPP6C MUTATED PPP6C WILD-TYPE 
         357.37          345.96 
  PPP6C MUTATED PPP6C WILD-TYPE 
         69.945          47.330 
[1] "2.6 - 357.4 (69.9)" "0.2 - 346.0 (47.3)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"PPP6C WILD-TYPE"   "PPP6C MUTATED"   "PPP6C MUTATED" "PPP6C WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE"   "PPP6C MUTATED" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"PPP6C WILD-TYPE"   "PPP6C MUTATED"   "PPP6C MUTATED" "PPP6C WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE"   "PPP6C MUTATED" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"PPP6C WILD-TYPE"   "PPP6C MUTATED"   "PPP6C MUTATED" "PPP6C WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE"   "PPP6C MUTATED" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE"   "PPP6C MUTATED" "PPP6C WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"PPP6C WILD-TYPE" "PPP6C WILD-TYPE" 
[1] "hr=" "4.4"
D18V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  PPP6C MUTATED                    1             0
  PPP6C WILD-TYPE                 21             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  PPP6C MUTATED                                                                                          4
  PPP6C WILD-TYPE                                                                                       28
                 vv
clus              REGIONAL LYMPH NODE
  PPP6C MUTATED                     9
  PPP6C WILD-TYPE                  95
D18V3, multiclass
                                                                                          clus
vv                                                                                         PPP6C MUTATED
  DISTANT METASTASIS                                                                                   1
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             4
  REGIONAL LYMPH NODE                                                                                  9
                                                                                          clus
vv                                                                                         PPP6C WILD-TYPE
  DISTANT METASTASIS                                                                                    21
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              28
  REGIONAL LYMPH NODE                                                                                   95
D18V4, binary
                 cls
clus               0  1
  PPP6C MUTATED    5  9
  PPP6C WILD-TYPE 55 90
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PPP6C MUTATED      5    9
  PPP6C WILD-TYPE   55   90
        clus
vv       PPP6C MUTATED PPP6C WILD-TYPE
  FEMALE             5              55
  MALE               9              90
                 vv
clus               M0  M1 M1A M1B M1C
  PPP6C MUTATED    13   0   0   0   1
  PPP6C WILD-TYPE 125   2   1   2   1
D18V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2A N2B N2C N3 NX
  PPP6C MUTATED    5  0   2   1   1   1   1  3  0
  PPP6C WILD-TYPE 82  2   5  14   3   9   4 11  2
D18V6, multiclass
D18V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  PPP6C MUTATED             1       1        0        0        1         0
  PPP6C WILD-TYPE           2      16       10       12       17         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  PPP6C MUTATED           1         1         0          1          3
  PPP6C WILD-TYPE         8         6         7          5         14
                 vv
clus              STAGE IIIC STAGE IV
  PPP6C MUTATED            4        1
  PPP6C WILD-TYPE         17        4
D18V8, multiclass

Clustering(19) Variable = FRG2B MUTATION ANALYSIS
D19V1, survival
                 sevent
clus2              0  1
  FRG2B MUTATED    5  5
  FRG2B WILD-TYPE 68 80
  FRG2B MUTATED FRG2B WILD-TYPE 
             10             148 
  FRG2B MUTATED FRG2B WILD-TYPE 
              5              80 
$`FRG2B MUTATED`
TCGA-DA-A1HV TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A20H TCGA-EE-A29D TCGA-EE-A2GI 
       48.89        33.73        14.70       168.26        13.97        22.55 
TCGA-EE-A2GO TCGA-EE-A2GR TCGA-EE-A2MC TCGA-EE-A3AE 
      101.95        14.30        61.51        26.73 

$`FRG2B WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HW TCGA-DA-A1HY 
      148.31        49.74         2.70         6.38        36.03       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
       20.38       194.83       176.55        35.93       107.34        61.18 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       53.92        65.92        23.44        68.09        28.60        10.49 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A183 TCGA-EE-A185 
      215.44        15.68        29.82         8.65        26.86         4.93 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H 
      109.64        78.87        63.32        47.84        39.62        32.19 
TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
        2.56        44.35        18.58        56.42        37.35        14.47 
TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
       55.89       345.96        25.87        17.92        46.82        78.94 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD 
       24.43        39.25        58.75        47.54        43.23       314.53 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM 
      135.91       182.01        89.33        54.71        55.00        75.48 
TCGA-EE-A2GN TCGA-EE-A2GP TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 
       90.94        13.87        55.59        19.56        67.13        21.67 
TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG 
      129.24        28.80        19.76        47.28       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM 
       16.96       204.62        96.23       144.76       203.01       167.87 
TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT 
       47.54       248.61        43.23       103.56       136.44        41.59 
TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AF 
       53.26         4.24       122.73        25.84         3.68        13.81 
TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
       23.47       138.77        12.59        26.37         6.41       131.08 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY 
       44.05        79.99        80.32       216.92        48.59       228.59 
TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB 
      202.62        20.91        28.08         7.76        27.68        48.85 
TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH 
      357.37        53.52        40.27        15.45         9.70        32.71 
TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR 
       47.38        23.93       101.26        74.73       133.55        11.41 
TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ 
      148.77        53.16        26.56        49.48        27.06        27.02 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        0.20        76.41       120.46       117.93        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       64.41        62.76        32.48        39.58 

  FRG2B MUTATED FRG2B WILD-TYPE 
          13.97            0.20 
  FRG2B MUTATED FRG2B WILD-TYPE 
         168.26          357.37 
  FRG2B MUTATED FRG2B WILD-TYPE 
          30.23           47.69 
[1] "14.0 - 168.3 (30.2)" "0.2 - 357.4 (47.7)" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"FRG2B WILD-TYPE"   "FRG2B MUTATED"   "FRG2B MUTATED" "FRG2B WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE"   "FRG2B MUTATED" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE"   "FRG2B MUTATED" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"FRG2B WILD-TYPE"   "FRG2B MUTATED"   "FRG2B MUTATED" "FRG2B WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE"   "FRG2B MUTATED" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE"   "FRG2B MUTATED" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"FRG2B WILD-TYPE"   "FRG2B MUTATED"   "FRG2B MUTATED" "FRG2B WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE"   "FRG2B MUTATED" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE"   "FRG2B MUTATED" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
[1] "hr=" "1.2"
D19V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  FRG2B MUTATED                    2             0
  FRG2B WILD-TYPE                 20             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  FRG2B MUTATED                                                                                          2
  FRG2B WILD-TYPE                                                                                       30
                 vv
clus              REGIONAL LYMPH NODE
  FRG2B MUTATED                     6
  FRG2B WILD-TYPE                  98
D19V3, multiclass
                                                                                          clus
vv                                                                                         FRG2B MUTATED
  DISTANT METASTASIS                                                                                   2
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             2
  REGIONAL LYMPH NODE                                                                                  6
                                                                                          clus
vv                                                                                         FRG2B WILD-TYPE
  DISTANT METASTASIS                                                                                    20
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              30
  REGIONAL LYMPH NODE                                                                                   98
D19V4, binary
                 cls
clus               0  1
  FRG2B MUTATED    5  5
  FRG2B WILD-TYPE 55 94
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FRG2B MUTATED      5    5
  FRG2B WILD-TYPE   55   94
        clus
vv       FRG2B MUTATED FRG2B WILD-TYPE
  FEMALE             5              55
  MALE               5              94
                 vv
clus               M0  M1 M1A M1B M1C
  FRG2B MUTATED    10   0   0   0   0
  FRG2B WILD-TYPE 128   2   1   2   2
D19V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2A N2B N2C N3 NX
  FRG2B MUTATED    7  0   0   2   0   1   0  0  0
  FRG2B WILD-TYPE 80  2   7  13   4   9   5 14  2
D19V6, multiclass
D19V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  FRG2B MUTATED             0       2        2        0        3         0
  FRG2B WILD-TYPE           3      15        8       12       15         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  FRG2B MUTATED           0         0         0          0          1
  FRG2B WILD-TYPE         9         7         7          6         16
                 vv
clus              STAGE IIIC STAGE IV
  FRG2B MUTATED            2        0
  FRG2B WILD-TYPE         19        5
D19V8, multiclass

Clustering(20) Variable = USP29 MUTATION ANALYSIS
D20V1, survival
                 sevent
clus2              0  1
  USP29 MUTATED   13 14
  USP29 WILD-TYPE 60 71
  USP29 MUTATED USP29 WILD-TYPE 
             27             131 
  USP29 MUTATED USP29 WILD-TYPE 
             14              71 
$`USP29 MUTATED`
TCGA-D3-A1Q6 TCGA-D3-A2JF TCGA-D9-A1JW TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A181 
       71.80        48.76         2.70        15.68        29.82        33.73 
TCGA-EE-A182 TCGA-EE-A29D TCGA-EE-A29N TCGA-EE-A2A0 TCGA-EE-A2GC TCGA-EE-A2GI 
       14.70        13.97        18.58        46.82        43.23        22.55 
TCGA-EE-A2GO TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2MD TCGA-EE-A2MH 
      101.95        67.13        21.67       129.24        47.28        16.96 
TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A3AC TCGA-EE-A3AG TCGA-FS-A1Z3 
      103.56       136.44        41.59        25.84        23.47        20.91 
TCGA-FS-A1ZA TCGA-FS-A1ZK TCGA-GN-A266 
       27.68        23.93        10.09 

$`USP29 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.57       112.54       121.22        28.08        31.59        43.40 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC 
       65.49        23.77        11.87        12.10        58.03        71.24 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 TCGA-D9-A149 
       60.23        24.53         9.30        21.47       148.31        49.74 
TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        6.38        48.89        36.03       117.17        20.38       194.83 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
      176.55        35.93       107.34        61.18        53.92        65.92 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A17Z 
       23.44        68.09        28.60        10.49       215.44         8.65 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A 
       26.86         4.93       109.64        78.87       168.26        63.32 
TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29P 
       47.84        39.62        32.19         2.56        44.35        56.42 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X 
       37.35        14.47        55.89       345.96        25.87        17.92 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GD 
       78.94        24.43        39.25        58.75        47.54       314.53 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM 
      135.91       182.01        89.33        54.71        55.00        75.48 
TCGA-EE-A2GN TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2M7 
       90.94        13.87        14.30        55.59        19.56        28.80 
TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MI TCGA-EE-A2MJ 
       19.76        61.51       103.27       103.17       204.62        96.23 
TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ 
      144.76       203.01       167.87        47.54       248.61        43.23 
TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF 
       53.26         4.24       122.73         3.68        26.73        13.81 
TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N 
      138.77        12.59        26.37         6.41       131.08        44.05 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 
       79.99        80.32       216.92        48.59       228.59       202.62 
TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE 
       28.08         7.76        48.85       357.37        53.52        40.27 
TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZM TCGA-FS-A1ZP 
       15.45         9.70        32.71        47.38       101.26        74.73 
TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW 
      133.55        11.41       148.77        53.16        26.56        49.48 
TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
       27.06        27.02         0.20        76.41       120.46       117.93 
TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       84.72        64.41        62.76        32.48        39.58 

  USP29 MUTATED USP29 WILD-TYPE 
            2.7             0.2 
  USP29 MUTATED USP29 WILD-TYPE 
         136.44          357.37 
  USP29 MUTATED USP29 WILD-TYPE 
          27.68           49.74 
[1] "2.7 - 136.4 (27.7)" "0.2 - 357.4 (49.7)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED"   "USP29 MUTATED" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"USP29 WILD-TYPE"   "USP29 MUTATED"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
  "USP29 MUTATED"   "USP29 MUTATED"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED"   "USP29 MUTATED" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED"   "USP29 MUTATED" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"USP29 WILD-TYPE"   "USP29 MUTATED"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
  "USP29 MUTATED"   "USP29 MUTATED"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED"   "USP29 MUTATED" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED"   "USP29 MUTATED" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"USP29 WILD-TYPE"   "USP29 MUTATED"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
  "USP29 MUTATED"   "USP29 MUTATED"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED"   "USP29 MUTATED" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" 
[1] "hr=" "1.5"
D20V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  USP29 MUTATED                    5             0
  USP29 WILD-TYPE                 17             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  USP29 MUTATED                                                                                          4
  USP29 WILD-TYPE                                                                                       28
                 vv
clus              REGIONAL LYMPH NODE
  USP29 MUTATED                    18
  USP29 WILD-TYPE                  86
D20V3, multiclass
                                                                                          clus
vv                                                                                         USP29 MUTATED
  DISTANT METASTASIS                                                                                   5
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             4
  REGIONAL LYMPH NODE                                                                                 18
                                                                                          clus
vv                                                                                         USP29 WILD-TYPE
  DISTANT METASTASIS                                                                                    17
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              28
  REGIONAL LYMPH NODE                                                                                   86
D20V4, binary
                 cls
clus               0  1
  USP29 MUTATED    7 20
  USP29 WILD-TYPE 53 79
[1] "tbl2"
                 cls
clus              [,1] [,2]
  USP29 MUTATED      7   20
  USP29 WILD-TYPE   53   79
        clus
vv       USP29 MUTATED USP29 WILD-TYPE
  FEMALE             7              53
  MALE              20              79
                 vv
clus               M0  M1 M1A M1B M1C
  USP29 MUTATED    23   0   0   0   0
  USP29 WILD-TYPE 115   2   1   2   2
D20V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2A N2B N2C N3 NX
  USP29 MUTATED   17  0   0   3   1   1   1  0  0
  USP29 WILD-TYPE 70  2   7  12   3   9   4 14  2
D20V6, multiclass
D20V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  USP29 MUTATED             0       3        4        1        6         1
  USP29 WILD-TYPE           3      14        6       11       12         6
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  USP29 MUTATED           1         0         1          0          2
  USP29 WILD-TYPE         8         7         6          6         15
                 vv
clus              STAGE IIIC STAGE IV
  USP29 MUTATED            2        0
  USP29 WILD-TYPE         19        5
D20V8, multiclass

Clustering(21) Variable = PRB4 MUTATION ANALYSIS
D21V1, survival
                sevent
clus2             0  1
  PRB4 MUTATED   12  5
  PRB4 WILD-TYPE 61 80
  PRB4 MUTATED PRB4 WILD-TYPE 
            17            141 
  PRB4 MUTATED PRB4 WILD-TYPE 
             5             80 
$`PRB4 MUTATED`
TCGA-D3-A2JF TCGA-DA-A1I5 TCGA-DA-A3F8 TCGA-EE-A181 TCGA-EE-A29D TCGA-EE-A29P 
       48.76       107.34        15.68        33.73        13.97        56.42 
TCGA-EE-A2A1 TCGA-EE-A2GJ TCGA-EE-A2GO TCGA-EE-A2M6 TCGA-EE-A2MI TCGA-EE-A2MN 
       78.94        89.33       101.95       129.24       204.62        47.54 
TCGA-EE-A2MR TCGA-EE-A2MS TCGA-ER-A19F TCGA-ER-A19N TCGA-GN-A265 
      103.56       136.44        26.37        44.05        84.72 

$`PRB4 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       43.40        65.49        23.77        11.87        12.10        58.03 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
       71.24        60.23        24.53         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
       49.74         2.70         6.38        48.89        36.03       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 
       20.38       194.83       176.55        35.93        61.18        53.92 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       65.92        23.44        68.09        28.60        10.49       215.44 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
       29.82         8.65        14.70        26.86         4.93       109.64 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H 
       78.87       168.26        63.32        47.84        39.62        32.19 
TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
        2.56        44.35        18.58        37.35        14.47        55.89 
TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A2 TCGA-EE-A2A5 
      345.96        25.87        17.92        46.82        24.43        39.25 
TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH 
       58.75        47.54        43.23       314.53       135.91       182.01 
TCGA-EE-A2GI TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GP 
       22.55        54.71        55.00        75.48        90.94        13.87 
TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M7 
       14.30        55.59        19.56        67.13        21.67        28.80 
TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH 
       19.76        61.51        47.28       103.27       103.17        16.96 
TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MP TCGA-EE-A2MQ 
       96.23       144.76       203.01       167.87       248.61        43.23 
TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD 
       41.59        53.26         4.24       122.73        25.84         3.68 
TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19J 
       26.73        13.81        23.47       138.77        12.59         6.41 
TCGA-ER-A19L TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY 
      131.08        79.99        80.32       216.92        48.59       228.59 
TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB 
      202.62        20.91        28.08         7.76        27.68        48.85 
TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH 
      357.37        53.52        40.27        15.45         9.70        32.71 
TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR 
       47.38        23.93       101.26        74.73       133.55        11.41 
TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ 
      148.77        53.16        26.56        49.48        27.06        27.02 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A266 TCGA-GN-A267 
        0.20        76.41       120.46       117.93        10.09        64.41 
TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       62.76        32.48        39.58 

  PRB4 MUTATED PRB4 WILD-TYPE 
         13.97           0.20 
  PRB4 MUTATED PRB4 WILD-TYPE 
        204.62         357.37 
  PRB4 MUTATED PRB4 WILD-TYPE 
         78.94          46.82 
[1] "14.0 - 204.6 (78.9)" "0.2 - 357.4 (46.8)" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
  "PRB4 MUTATED" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
  "PRB4 MUTATED" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED"   "PRB4 MUTATED" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
  "PRB4 MUTATED" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
  "PRB4 MUTATED" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
  "PRB4 MUTATED" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED"   "PRB4 MUTATED" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
  "PRB4 MUTATED" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
  "PRB4 MUTATED" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
  "PRB4 MUTATED" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED"   "PRB4 MUTATED" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE"   "PRB4 MUTATED" "PRB4 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
  "PRB4 MUTATED" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"PRB4 WILD-TYPE" "PRB4 WILD-TYPE" 
[1] "hr=" "2.3"
D21V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  PRB4 MUTATED                    2             0
  PRB4 WILD-TYPE                 20             1
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  PRB4 MUTATED                                                                                          1
  PRB4 WILD-TYPE                                                                                       31
                vv
clus             REGIONAL LYMPH NODE
  PRB4 MUTATED                    14
  PRB4 WILD-TYPE                  90
D21V3, multiclass
                                                                                          clus
vv                                                                                         PRB4 MUTATED
  DISTANT METASTASIS                                                                                  2
  PRIMARY TUMOR                                                                                       0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            1
  REGIONAL LYMPH NODE                                                                                14
                                                                                          clus
vv                                                                                         PRB4 WILD-TYPE
  DISTANT METASTASIS                                                                                   20
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             31
  REGIONAL LYMPH NODE                                                                                  90
D21V4, binary
                cls
clus              0  1
  PRB4 MUTATED    4 13
  PRB4 WILD-TYPE 56 86
[1] "tbl2"
                cls
clus             [,1] [,2]
  PRB4 MUTATED      4   13
  PRB4 WILD-TYPE   56   86
        clus
vv       PRB4 MUTATED PRB4 WILD-TYPE
  FEMALE            4             56
  MALE             13             86
                vv
clus              M0  M1 M1A M1B M1C
  PRB4 MUTATED    14   0   0   0   1
  PRB4 WILD-TYPE 124   2   1   2   1
D21V5, multiclass
                vv
clus             N0 N1 N1A N1B N2A N2B N2C N3 NX
  PRB4 MUTATED   13  0   0   1   0   1   0  0  0
  PRB4 WILD-TYPE 74  2   7  14   4   9   5 14  2
D21V6, multiclass
D21V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  PRB4 MUTATED             0       3        2        1        3         0
  PRB4 WILD-TYPE           3      14        8       11       15         7
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  PRB4 MUTATED           1         1         0          0          1          1
  PRB4 WILD-TYPE         8         6         7          6         16         20
                vv
clus             STAGE IV
  PRB4 MUTATED          1
  PRB4 WILD-TYPE        4
D21V8, multiclass

Clustering(22) Variable = HIST1H2AA MUTATION ANALYSIS
D22V1, survival
                     sevent
clus2                  0  1
  HIST1H2AA MUTATED    3  4
  HIST1H2AA WILD-TYPE 70 81
  HIST1H2AA MUTATED HIST1H2AA WILD-TYPE 
                  7                 151 
  HIST1H2AA MUTATED HIST1H2AA WILD-TYPE 
                  4                  81 
$`HIST1H2AA MUTATED`
TCGA-EE-A29D TCGA-EE-A29M TCGA-EE-A2GU TCGA-EE-A2MC TCGA-EE-A2MK TCGA-FS-A1YW 
       13.97        44.35        67.13        61.51       144.76       216.92 
TCGA-FS-A1ZK 
       23.93 

$`HIST1H2AA WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW 
      148.31        49.74         2.70         6.38        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       61.18        53.92        65.92        23.44        68.09        28.60 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
       10.49       215.44        15.68        29.82         8.65        33.73 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H 
       14.70        26.86         4.93       109.64        78.87       168.26 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N 
       63.32        47.84        39.62        32.19         2.56        18.58 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V 
       56.42        37.35        14.47        55.89       345.96        25.87 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
       17.92        46.82        78.94        24.43        39.25        58.75 
TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI 
       47.54        43.23       314.53       135.91       182.01        22.55 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO 
       89.33        54.71        55.00        75.48        90.94       101.95 
TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2M5 TCGA-EE-A2M6 
       13.87        14.30        55.59        19.56        21.67       129.24 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH 
       28.80        19.76        47.28       103.27       103.17        16.96 
TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP 
      204.62        96.23       203.01       167.87        47.54       248.61 
TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA 
       43.23       103.56       136.44        41.59        53.26         4.24 
TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG 
      122.73        25.84         3.68        26.73        13.81        23.47 
TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N 
      138.77        12.59        26.37         6.41       131.08        44.05 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 
       79.99        80.32        48.59       228.59       202.62        20.91 
TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD 
       28.08         7.76        27.68        48.85       357.37        53.52 
TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZM 
       40.27        15.45         9.70        32.71        47.38       101.26 
TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU 
       74.73       133.55        11.41       148.77        53.16        26.56 
TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 
       49.48        27.06        27.02         0.20        76.41       120.46 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
      117.93        84.72        10.09        64.41        62.76        32.48 
TCGA-GN-A26D 
       39.58 

  HIST1H2AA MUTATED HIST1H2AA WILD-TYPE 
              13.97                0.20 
  HIST1H2AA MUTATED HIST1H2AA WILD-TYPE 
             216.92              357.37 
  HIST1H2AA MUTATED HIST1H2AA WILD-TYPE 
              61.51               47.54 
[1] "14.0 - 216.9 (61.5)" "0.2 - 357.4 (47.5)" 
         TCGA-D3-A1Q1          TCGA-D3-A1Q5          TCGA-D3-A1Q6 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A1Q7          TCGA-D3-A1Q8          TCGA-D3-A1Q9 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A2J6          TCGA-D3-A2J8          TCGA-D3-A2J9 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A2JD          TCGA-D3-A2JF          TCGA-D3-A2JK 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A3C6          TCGA-D3-A3CC          TCGA-D3-A3CE 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A3CF          TCGA-D3-A3MO          TCGA-D3-A3MV 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D9-A148          TCGA-D9-A149          TCGA-D9-A1JW 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D9-A1JX          TCGA-DA-A1HV          TCGA-DA-A1HW 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A1HY          TCGA-DA-A1I0          TCGA-DA-A1I1 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A1I2          TCGA-DA-A1I4          TCGA-DA-A1I5 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A1I7          TCGA-DA-A1I8          TCGA-DA-A1IA 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A1IB          TCGA-DA-A1IC          TCGA-DA-A3F2 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A3F3          TCGA-DA-A3F5          TCGA-DA-A3F8 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A17X          TCGA-EE-A17Z          TCGA-EE-A181 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A182          TCGA-EE-A183          TCGA-EE-A185 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A20B          TCGA-EE-A20F          TCGA-EE-A20H 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A29A          TCGA-EE-A29C          TCGA-EE-A29D 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE"   "HIST1H2AA MUTATED" 
         TCGA-EE-A29E          TCGA-EE-A29H          TCGA-EE-A29L 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A29M          TCGA-EE-A29N          TCGA-EE-A29P 
  "HIST1H2AA MUTATED" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A29Q          TCGA-EE-A29R          TCGA-EE-A29S 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A29T          TCGA-EE-A29V          TCGA-EE-A29X 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2A0          TCGA-EE-A2A1          TCGA-EE-A2A2 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2A5          TCGA-EE-A2A6          TCGA-EE-A2GB 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2GC          TCGA-EE-A2GD          TCGA-EE-A2GE 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2GH          TCGA-EE-A2GI          TCGA-EE-A2GJ 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2GK          TCGA-EE-A2GL          TCGA-EE-A2GM 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2GN          TCGA-EE-A2GO          TCGA-EE-A2GP 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2GR          TCGA-EE-A2GS          TCGA-EE-A2GT 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2GU          TCGA-EE-A2M5          TCGA-EE-A2M6 
  "HIST1H2AA MUTATED" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2M7          TCGA-EE-A2M8          TCGA-EE-A2MC 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE"   "HIST1H2AA MUTATED" 
         TCGA-EE-A2MD          TCGA-EE-A2ME          TCGA-EE-A2MG 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2MH          TCGA-EE-A2MI          TCGA-EE-A2MJ 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2MK          TCGA-EE-A2ML          TCGA-EE-A2MM 
  "HIST1H2AA MUTATED" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2MN          TCGA-EE-A2MP          TCGA-EE-A2MQ 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2MR          TCGA-EE-A2MS          TCGA-EE-A2MT 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2MU          TCGA-EE-A3AA          TCGA-EE-A3AB 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A3AC          TCGA-EE-A3AD          TCGA-EE-A3AE 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A3AF          TCGA-EE-A3AG          TCGA-EE-A3AH 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-ER-A19D          TCGA-ER-A19F          TCGA-ER-A19J 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-ER-A19L          TCGA-ER-A19N          TCGA-ER-A1A1 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-ER-A3ET          TCGA-FS-A1YW          TCGA-FS-A1YX 
"HIST1H2AA WILD-TYPE"   "HIST1H2AA MUTATED" "HIST1H2AA WILD-TYPE" 
         TCGA-FS-A1YY          TCGA-FS-A1Z0          TCGA-FS-A1Z3 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-FS-A1Z4          TCGA-FS-A1Z7          TCGA-FS-A1ZA 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-FS-A1ZB          TCGA-FS-A1ZC          TCGA-FS-A1ZD 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-FS-A1ZE          TCGA-FS-A1ZF          TCGA-FS-A1ZG 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-FS-A1ZH          TCGA-FS-A1ZJ          TCGA-FS-A1ZK 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE"   "HIST1H2AA MUTATED" 
         TCGA-FS-A1ZM          TCGA-FS-A1ZP          TCGA-FS-A1ZQ 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-FS-A1ZR          TCGA-FS-A1ZS          TCGA-FS-A1ZT 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-FS-A1ZU          TCGA-FS-A1ZW          TCGA-FS-A1ZY 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-FS-A1ZZ          TCGA-FW-A3I3          TCGA-GN-A261 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-GN-A262          TCGA-GN-A264          TCGA-GN-A265 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-GN-A266          TCGA-GN-A267          TCGA-GN-A268 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-GN-A26A          TCGA-GN-A26D 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A1Q1          TCGA-D3-A1Q5          TCGA-D3-A1Q6 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A1Q7          TCGA-D3-A1Q8          TCGA-D3-A1Q9 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A2J6          TCGA-D3-A2J8          TCGA-D3-A2J9 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A2JD          TCGA-D3-A2JF          TCGA-D3-A2JK 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A3C6          TCGA-D3-A3CC          TCGA-D3-A3CE 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A3CF          TCGA-D3-A3MO          TCGA-D3-A3MV 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D9-A148          TCGA-D9-A149          TCGA-D9-A1JW 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D9-A1JX          TCGA-DA-A1HV          TCGA-DA-A1HW 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A1HY          TCGA-DA-A1I0          TCGA-DA-A1I1 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A1I2          TCGA-DA-A1I4          TCGA-DA-A1I5 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A1I7          TCGA-DA-A1I8          TCGA-DA-A1IA 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A1IB          TCGA-DA-A1IC          TCGA-DA-A3F2 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A3F3          TCGA-DA-A3F5          TCGA-DA-A3F8 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A17X          TCGA-EE-A17Z          TCGA-EE-A181 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A182          TCGA-EE-A183          TCGA-EE-A185 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A20B          TCGA-EE-A20F          TCGA-EE-A20H 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A29A          TCGA-EE-A29C          TCGA-EE-A29D 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE"   "HIST1H2AA MUTATED" 
         TCGA-EE-A29E          TCGA-EE-A29H          TCGA-EE-A29L 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A29M          TCGA-EE-A29N          TCGA-EE-A29P 
  "HIST1H2AA MUTATED" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A29Q          TCGA-EE-A29R          TCGA-EE-A29S 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A29T          TCGA-EE-A29V          TCGA-EE-A29X 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2A0          TCGA-EE-A2A1          TCGA-EE-A2A2 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2A5          TCGA-EE-A2A6          TCGA-EE-A2GB 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2GC          TCGA-EE-A2GD          TCGA-EE-A2GE 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2GH          TCGA-EE-A2GI          TCGA-EE-A2GJ 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2GK          TCGA-EE-A2GL          TCGA-EE-A2GM 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2GN          TCGA-EE-A2GO          TCGA-EE-A2GP 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2GR          TCGA-EE-A2GS          TCGA-EE-A2GT 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2GU          TCGA-EE-A2M5          TCGA-EE-A2M6 
  "HIST1H2AA MUTATED" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2M7          TCGA-EE-A2M8          TCGA-EE-A2MC 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE"   "HIST1H2AA MUTATED" 
         TCGA-EE-A2MD          TCGA-EE-A2ME          TCGA-EE-A2MG 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2MH          TCGA-EE-A2MI          TCGA-EE-A2MJ 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2MK          TCGA-EE-A2ML          TCGA-EE-A2MM 
  "HIST1H2AA MUTATED" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2MN          TCGA-EE-A2MP          TCGA-EE-A2MQ 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2MR          TCGA-EE-A2MS          TCGA-EE-A2MT 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2MU          TCGA-EE-A3AA          TCGA-EE-A3AB 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A3AC          TCGA-EE-A3AD          TCGA-EE-A3AE 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A3AF          TCGA-EE-A3AG          TCGA-EE-A3AH 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-ER-A19D          TCGA-ER-A19F          TCGA-ER-A19J 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-ER-A19L          TCGA-ER-A19N          TCGA-ER-A1A1 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-ER-A3ET          TCGA-FS-A1YW          TCGA-FS-A1YX 
"HIST1H2AA WILD-TYPE"   "HIST1H2AA MUTATED" "HIST1H2AA WILD-TYPE" 
         TCGA-FS-A1YY          TCGA-FS-A1Z0          TCGA-FS-A1Z3 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-FS-A1Z4          TCGA-FS-A1Z7          TCGA-FS-A1ZA 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-FS-A1ZB          TCGA-FS-A1ZC          TCGA-FS-A1ZD 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-FS-A1ZE          TCGA-FS-A1ZF          TCGA-FS-A1ZG 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-FS-A1ZH          TCGA-FS-A1ZJ          TCGA-FS-A1ZK 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE"   "HIST1H2AA MUTATED" 
         TCGA-FS-A1ZM          TCGA-FS-A1ZP          TCGA-FS-A1ZQ 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-FS-A1ZR          TCGA-FS-A1ZS          TCGA-FS-A1ZT 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-FS-A1ZU          TCGA-FS-A1ZW          TCGA-FS-A1ZY 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-FS-A1ZZ          TCGA-FW-A3I3          TCGA-GN-A261 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-GN-A262          TCGA-GN-A264          TCGA-GN-A265 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-GN-A266          TCGA-GN-A267          TCGA-GN-A268 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-GN-A26A          TCGA-GN-A26D 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A1Q1          TCGA-D3-A1Q5          TCGA-D3-A1Q6 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A1Q7          TCGA-D3-A1Q8          TCGA-D3-A1Q9 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A2J6          TCGA-D3-A2J8          TCGA-D3-A2J9 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A2JD          TCGA-D3-A2JF          TCGA-D3-A2JK 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A3C6          TCGA-D3-A3CC          TCGA-D3-A3CE 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D3-A3CF          TCGA-D3-A3MO          TCGA-D3-A3MV 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D9-A148          TCGA-D9-A149          TCGA-D9-A1JW 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-D9-A1JX          TCGA-DA-A1HV          TCGA-DA-A1HW 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A1HY          TCGA-DA-A1I0          TCGA-DA-A1I1 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A1I2          TCGA-DA-A1I4          TCGA-DA-A1I5 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A1I7          TCGA-DA-A1I8          TCGA-DA-A1IA 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A1IB          TCGA-DA-A1IC          TCGA-DA-A3F2 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-DA-A3F3          TCGA-DA-A3F5          TCGA-DA-A3F8 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A17X          TCGA-EE-A17Z          TCGA-EE-A181 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A182          TCGA-EE-A183          TCGA-EE-A185 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A20B          TCGA-EE-A20F          TCGA-EE-A20H 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A29A          TCGA-EE-A29C          TCGA-EE-A29D 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE"   "HIST1H2AA MUTATED" 
         TCGA-EE-A29E          TCGA-EE-A29H          TCGA-EE-A29L 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A29M          TCGA-EE-A29N          TCGA-EE-A29P 
  "HIST1H2AA MUTATED" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A29Q          TCGA-EE-A29R          TCGA-EE-A29S 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A29T          TCGA-EE-A29V          TCGA-EE-A29X 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2A0          TCGA-EE-A2A1          TCGA-EE-A2A2 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2A5          TCGA-EE-A2A6          TCGA-EE-A2GB 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2GC          TCGA-EE-A2GD          TCGA-EE-A2GE 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2GH          TCGA-EE-A2GI          TCGA-EE-A2GJ 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2GK          TCGA-EE-A2GL          TCGA-EE-A2GM 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2GN          TCGA-EE-A2GO          TCGA-EE-A2GP 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2GR          TCGA-EE-A2GS          TCGA-EE-A2GT 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2GU          TCGA-EE-A2M5          TCGA-EE-A2M6 
  "HIST1H2AA MUTATED" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2M7          TCGA-EE-A2M8          TCGA-EE-A2MC 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE"   "HIST1H2AA MUTATED" 
         TCGA-EE-A2MD          TCGA-EE-A2ME          TCGA-EE-A2MG 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2MH          TCGA-EE-A2MI          TCGA-EE-A2MJ 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2MK          TCGA-EE-A2ML          TCGA-EE-A2MM 
  "HIST1H2AA MUTATED" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2MN          TCGA-EE-A2MP          TCGA-EE-A2MQ 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2MR          TCGA-EE-A2MS          TCGA-EE-A2MT 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A2MU          TCGA-EE-A3AA          TCGA-EE-A3AB 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A3AC          TCGA-EE-A3AD          TCGA-EE-A3AE 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-EE-A3AF          TCGA-EE-A3AG          TCGA-EE-A3AH 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-ER-A19D          TCGA-ER-A19F          TCGA-ER-A19J 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-ER-A19L          TCGA-ER-A19N          TCGA-ER-A1A1 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-ER-A3ET          TCGA-FS-A1YW          TCGA-FS-A1YX 
"HIST1H2AA WILD-TYPE"   "HIST1H2AA MUTATED" "HIST1H2AA WILD-TYPE" 
         TCGA-FS-A1YY          TCGA-FS-A1Z0          TCGA-FS-A1Z3 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-FS-A1Z4          TCGA-FS-A1Z7          TCGA-FS-A1ZA 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-FS-A1ZB          TCGA-FS-A1ZC          TCGA-FS-A1ZD 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-FS-A1ZE          TCGA-FS-A1ZF          TCGA-FS-A1ZG 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-FS-A1ZH          TCGA-FS-A1ZJ          TCGA-FS-A1ZK 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE"   "HIST1H2AA MUTATED" 
         TCGA-FS-A1ZM          TCGA-FS-A1ZP          TCGA-FS-A1ZQ 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-FS-A1ZR          TCGA-FS-A1ZS          TCGA-FS-A1ZT 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-FS-A1ZU          TCGA-FS-A1ZW          TCGA-FS-A1ZY 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-FS-A1ZZ          TCGA-FW-A3I3          TCGA-GN-A261 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-GN-A262          TCGA-GN-A264          TCGA-GN-A265 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-GN-A266          TCGA-GN-A267          TCGA-GN-A268 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
         TCGA-GN-A26A          TCGA-GN-A26D 
"HIST1H2AA WILD-TYPE" "HIST1H2AA WILD-TYPE" 
[1] "hr=" "1.2"
D22V2, continuous
                     vv
clus                  DISTANT METASTASIS PRIMARY TUMOR
  HIST1H2AA MUTATED                    1             1
  HIST1H2AA WILD-TYPE                 21             0
                     vv
clus                  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  HIST1H2AA MUTATED                                                                                          0
  HIST1H2AA WILD-TYPE                                                                                       32
                     vv
clus                  REGIONAL LYMPH NODE
  HIST1H2AA MUTATED                     5
  HIST1H2AA WILD-TYPE                  99
D22V3, multiclass
                                                                                          clus
vv                                                                                         HIST1H2AA MUTATED
  DISTANT METASTASIS                                                                                       1
  PRIMARY TUMOR                                                                                            1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                 0
  REGIONAL LYMPH NODE                                                                                      5
                                                                                          clus
vv                                                                                         HIST1H2AA WILD-TYPE
  DISTANT METASTASIS                                                                                        21
  PRIMARY TUMOR                                                                                              0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                  32
  REGIONAL LYMPH NODE                                                                                       99
D22V4, binary
                     cls
clus                   0  1
  HIST1H2AA MUTATED    3  4
  HIST1H2AA WILD-TYPE 57 95
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  HIST1H2AA MUTATED      3    4
  HIST1H2AA WILD-TYPE   57   95
        clus
vv       HIST1H2AA MUTATED HIST1H2AA WILD-TYPE
  FEMALE                 3                  57
  MALE                   4                  95
                     vv
clus                   M0  M1 M1A M1B M1C
  HIST1H2AA MUTATED     7   0   0   0   0
  HIST1H2AA WILD-TYPE 131   2   1   2   2
D22V5, multiclass
                     vv
clus                  N0 N1 N1A N1B N2A N2B N2C N3 NX
  HIST1H2AA MUTATED    6  0   0   1   0   0   0  0  0
  HIST1H2AA WILD-TYPE 81  2   7  14   4  10   5 14  2
D22V6, multiclass
D22V7, continuous
                     vv
clus                  I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  HIST1H2AA MUTATED             0       1        1        2        2         0
  HIST1H2AA WILD-TYPE           3      16        9       10       16         7
                     vv
clus                  STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  HIST1H2AA MUTATED           0         0         0          0          0
  HIST1H2AA WILD-TYPE         9         7         7          6         17
                     vv
clus                  STAGE IIIC STAGE IV
  HIST1H2AA MUTATED            1        0
  HIST1H2AA WILD-TYPE         20        5
D22V8, multiclass

Clustering(23) Variable = RPTN MUTATION ANALYSIS
D23V1, survival
                sevent
clus2             0  1
  RPTN MUTATED   14 12
  RPTN WILD-TYPE 59 73
  RPTN MUTATED RPTN WILD-TYPE 
            26            132 
  RPTN MUTATED RPTN WILD-TYPE 
            12             73 
$`RPTN MUTATED`
TCGA-D3-A1Q5 TCGA-D3-A2J6 TCGA-D3-A2JF TCGA-D3-A3C6 TCGA-D9-A1JW TCGA-DA-A1HV 
      112.54        43.40        48.76        58.03         2.70        48.89 
TCGA-EE-A17X TCGA-EE-A181 TCGA-EE-A20F TCGA-EE-A29E TCGA-EE-A29M TCGA-EE-A29S 
       29.82        33.73        78.87        39.62        44.35        55.89 
TCGA-EE-A2A6 TCGA-EE-A2GD TCGA-EE-A2GH TCGA-EE-A2GJ TCGA-EE-A2GT TCGA-EE-A2M5 
       58.75       314.53       182.01        89.33        19.56        21.67 
TCGA-EE-A2MD TCGA-EE-A2MJ TCGA-EE-A2MR TCGA-EE-A3AE TCGA-EE-A3AF TCGA-FS-A1Z3 
       47.28        96.23       103.56        26.73        13.81        20.91 
TCGA-FS-A1ZC TCGA-GN-A266 
      357.37        10.09 

$`RPTN WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J8 
       16.57        71.80       121.22        28.08        31.59        65.49 
TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF 
       23.77        11.87        12.10        71.24        60.23        24.53 
TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JX TCGA-DA-A1HW 
        9.30        21.47       148.31        49.74         6.38        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       61.18        53.92        65.92        23.44        68.09        28.60 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 
       10.49       215.44        15.68         8.65        14.70        26.86 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
        4.93       109.64       168.26        63.32        47.84        13.97 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
       32.19         2.56        18.58        56.42        37.35        14.47 
TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
      345.96        25.87        17.92        46.82        78.94        24.43 
TCGA-EE-A2A5 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GE TCGA-EE-A2GI TCGA-EE-A2GK 
       39.25        47.54        43.23       135.91        22.55        54.71 
TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR 
       55.00        75.48        90.94       101.95        13.87        14.30 
TCGA-EE-A2GS TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC 
       55.59        67.13       129.24        28.80        19.76        61.51 
TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MK TCGA-EE-A2ML 
      103.27       103.17        16.96       204.62       144.76       203.01 
TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MS TCGA-EE-A2MT 
      167.87        47.54       248.61        43.23       136.44        41.59 
TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AG 
       53.26         4.24       122.73        25.84         3.68        23.47 
TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N 
      138.77        12.59        26.37         6.41       131.08        44.05 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 
       79.99        80.32       216.92        48.59       228.59       202.62 
TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZE 
       28.08         7.76        27.68        48.85        53.52        40.27 
TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM 
       15.45         9.70        32.71        47.38        23.93       101.26 
TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU 
       74.73       133.55        11.41       148.77        53.16        26.56 
TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 
       49.48        27.06        27.02         0.20        76.41       120.46 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
      117.93        84.72        64.41        62.76        32.48        39.58 

  RPTN MUTATED RPTN WILD-TYPE 
           2.7            0.2 
  RPTN MUTATED RPTN WILD-TYPE 
        357.37         345.96 
  RPTN MUTATED RPTN WILD-TYPE 
         48.02          47.54 
[1] "2.7 - 357.4 (48.0)" "0.2 - 346.0 (47.5)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
  "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
  "RPTN MUTATED" "RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
  "RPTN MUTATED" "RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED"   "RPTN MUTATED" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
  "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
  "RPTN MUTATED" "RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
  "RPTN MUTATED" "RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED"   "RPTN MUTATED" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
  "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
  "RPTN MUTATED" "RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
  "RPTN MUTATED" "RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED"   "RPTN MUTATED" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"RPTN WILD-TYPE" "RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"RPTN WILD-TYPE"   "RPTN MUTATED" "RPTN WILD-TYPE" "RPTN WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"RPTN WILD-TYPE" "RPTN WILD-TYPE" 
[1] "hr=" "1.4"
D23V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  RPTN MUTATED                    3             1
  RPTN WILD-TYPE                 19             0
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  RPTN MUTATED                                                                                          2
  RPTN WILD-TYPE                                                                                       30
                vv
clus             REGIONAL LYMPH NODE
  RPTN MUTATED                    20
  RPTN WILD-TYPE                  84
D23V3, multiclass
                                                                                          clus
vv                                                                                         RPTN MUTATED
  DISTANT METASTASIS                                                                                  3
  PRIMARY TUMOR                                                                                       1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            2
  REGIONAL LYMPH NODE                                                                                20
                                                                                          clus
vv                                                                                         RPTN WILD-TYPE
  DISTANT METASTASIS                                                                                   19
  PRIMARY TUMOR                                                                                         0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             30
  REGIONAL LYMPH NODE                                                                                  84
D23V4, binary
                cls
clus              0  1
  RPTN MUTATED    8 18
  RPTN WILD-TYPE 52 81
[1] "tbl2"
                cls
clus             [,1] [,2]
  RPTN MUTATED      8   18
  RPTN WILD-TYPE   52   81
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  FEMALE            8             52
  MALE             18             81
                vv
clus              M0  M1 M1A M1B M1C
  RPTN MUTATED    23   0   0   0   0
  RPTN WILD-TYPE 115   2   1   2   2
D23V5, multiclass
                vv
clus             N0 N1 N1A N1B N2A N2B N2C N3 NX
  RPTN MUTATED   20  0   0   1   1   1   0  0  0
  RPTN WILD-TYPE 67  2   7  14   3   9   5 14  2
D23V6, multiclass
D23V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  RPTN MUTATED             2       3        5        2        4         2
  RPTN WILD-TYPE           1      14        5       10       14         5
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  RPTN MUTATED           2         0         0          0          2          0
  RPTN WILD-TYPE         7         7         7          6         15         21
                vv
clus             STAGE IV
  RPTN MUTATED          0
  RPTN WILD-TYPE        5
D23V8, multiclass

Clustering(24) Variable = ZNF479 MUTATION ANALYSIS
D24V1, survival
                  sevent
clus2               0  1
  ZNF479 MUTATED   10  3
  ZNF479 WILD-TYPE 63 82
  ZNF479 MUTATED ZNF479 WILD-TYPE 
              13              145 
  ZNF479 MUTATED ZNF479 WILD-TYPE 
               3               82 
$`ZNF479 MUTATED`
TCGA-D3-A3MV TCGA-DA-A1IB TCGA-EE-A182 TCGA-EE-A29D TCGA-EE-A2A1 TCGA-EE-A2GC 
       21.47        23.44        14.70        13.97        78.94        43.23 
TCGA-EE-A2GI TCGA-EE-A2MD TCGA-EE-A2MS TCGA-ER-A3ET TCGA-FS-A1ZM TCGA-FW-A3I3 
       22.55        47.28       136.44        80.32       101.26         0.20 
TCGA-GN-A262 
      120.46 

$`ZNF479 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D9-A148 
       58.03        71.24        60.23        24.53         9.30       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
       49.74         2.70         6.38        48.89        36.03       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
       20.38       194.83       176.55        35.93       107.34        61.18 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       53.92        65.92        68.09        28.60        10.49       215.44 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 
       15.68        29.82         8.65        33.73        26.86         4.93 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29E 
      109.64        78.87       168.26        63.32        47.84        39.62 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       32.19         2.56        44.35        18.58        56.42        37.35 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
       14.47        55.89       345.96        25.87        17.92        46.82 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GD TCGA-EE-A2GE 
       24.43        39.25        58.75        47.54       314.53       135.91 
TCGA-EE-A2GH TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN 
      182.01        89.33        54.71        55.00        75.48        90.94 
TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU 
      101.95        13.87        14.30        55.59        19.56        67.13 
TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2ME 
       21.67       129.24        28.80        19.76        61.51       103.27 
TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML 
      103.17        16.96       204.62        96.23       144.76       203.01 
TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MT 
      167.87        47.54       248.61        43.23       103.56        41.59 
TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE 
       53.26         4.24       122.73        25.84         3.68        26.73 
TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       13.81        23.47       138.77        12.59        26.37         6.41 
TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY 
      131.08        44.05        79.99       216.92        48.59       228.59 
TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB 
      202.62        20.91        28.08         7.76        27.68        48.85 
TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH 
      357.37        53.52        40.27        15.45         9.70        32.71 
TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS 
       47.38        23.93        74.73       133.55        11.41       148.77 
TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-GN-A261 
       53.16        26.56        49.48        27.06        27.02        76.41 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
      117.93        84.72        10.09        64.41        62.76        32.48 
TCGA-GN-A26D 
       39.58 

  ZNF479 MUTATED ZNF479 WILD-TYPE 
            0.20             2.56 
  ZNF479 MUTATED ZNF479 WILD-TYPE 
          136.44           357.37 
  ZNF479 MUTATED ZNF479 WILD-TYPE 
           43.23            47.84 
[1] "0.2 - 136.4 (43.2)" "2.6 - 357.4 (47.8)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
  "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE"   "ZNF479 MUTATED" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
  "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
  "ZNF479 MUTATED" "ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
  "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE"   "ZNF479 MUTATED" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
  "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
  "ZNF479 MUTATED" "ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
  "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE"   "ZNF479 MUTATED" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
  "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
  "ZNF479 MUTATED" "ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
[1] "hr=" "2"  
D24V2, continuous
                  vv
clus               DISTANT METASTASIS PRIMARY TUMOR
  ZNF479 MUTATED                    2             0
  ZNF479 WILD-TYPE                 20             1
                  vv
clus               REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  ZNF479 MUTATED                                                                                          4
  ZNF479 WILD-TYPE                                                                                       28
                  vv
clus               REGIONAL LYMPH NODE
  ZNF479 MUTATED                     7
  ZNF479 WILD-TYPE                  97
D24V3, multiclass
                                                                                          clus
vv                                                                                         ZNF479 MUTATED
  DISTANT METASTASIS                                                                                    2
  PRIMARY TUMOR                                                                                         0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              4
  REGIONAL LYMPH NODE                                                                                   7
                                                                                          clus
vv                                                                                         ZNF479 WILD-TYPE
  DISTANT METASTASIS                                                                                     20
  PRIMARY TUMOR                                                                                           1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               28
  REGIONAL LYMPH NODE                                                                                    97
D24V4, binary
                  cls
clus                0  1
  ZNF479 MUTATED    6  7
  ZNF479 WILD-TYPE 54 92
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF479 MUTATED      6    7
  ZNF479 WILD-TYPE   54   92
        clus
vv       ZNF479 MUTATED ZNF479 WILD-TYPE
  FEMALE              6               54
  MALE                7               92
                  vv
clus                M0  M1 M1A M1B M1C
  ZNF479 MUTATED    11   1   0   0   0
  ZNF479 WILD-TYPE 127   1   1   2   2
D24V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2A N2B N2C N3 NX
  ZNF479 MUTATED    6  0   1   2   1   1   1  0  0
  ZNF479 WILD-TYPE 81  2   6  13   3   9   4 14  2
D24V6, multiclass
D24V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  ZNF479 MUTATED             0       0        1        1        2         0
  ZNF479 WILD-TYPE           3      17        9       11       16         7
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  ZNF479 MUTATED           1         0         1          1          1
  ZNF479 WILD-TYPE         8         7         6          5         16
                  vv
clus               STAGE IIIC STAGE IV
  ZNF479 MUTATED            3        1
  ZNF479 WILD-TYPE         18        4
D24V8, multiclass

Clustering(25) Variable = C8A MUTATION ANALYSIS
D25V1, survival
               sevent
clus2            0  1
  C8A MUTATED    9 11
  C8A WILD-TYPE 64 74
  C8A MUTATED C8A WILD-TYPE 
           20           138 
  C8A MUTATED C8A WILD-TYPE 
           11            74 
$`C8A MUTATED`
TCGA-D3-A1Q7 TCGA-D3-A2J8 TCGA-D3-A3MV TCGA-DA-A1I0 TCGA-DA-A1IC TCGA-DA-A3F8 
      121.22        65.49        21.47        20.38        68.09        15.68 
TCGA-EE-A181 TCGA-EE-A29D TCGA-EE-A29L TCGA-EE-A2A2 TCGA-EE-A2GC TCGA-EE-A2GT 
       33.73        13.97         2.56        24.43        43.23        19.56 
TCGA-EE-A2GU TCGA-EE-A3AA TCGA-EE-A3AD TCGA-ER-A19F TCGA-FS-A1ZC TCGA-FS-A1ZK 
       67.13         4.24         3.68        26.37       357.37        23.93 
TCGA-FS-A1ZQ TCGA-GN-A266 
      133.55        10.09 

$`C8A WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.57       112.54        71.80        28.08        31.59        43.40 
TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC 
       23.77        11.87        48.76        12.10        58.03        71.24 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW 
       60.23        24.53         9.30       148.31        49.74         2.70 
TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I1 TCGA-DA-A1I2 
        6.38        48.89        36.03       117.17       194.83       176.55 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB 
       35.93       107.34        61.18        53.92        65.92        23.44 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 
       28.60        10.49       215.44        29.82         8.65        14.70 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A 
       26.86         4.93       109.64        78.87       168.26        63.32 
TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
       47.84        39.62        32.19        44.35        18.58        56.42 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X 
       37.35        14.47        55.89       345.96        25.87        17.92 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GD 
       46.82        78.94        39.25        58.75        47.54       314.53 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL 
      135.91       182.01        22.55        89.33        54.71        55.00 
TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS 
       75.48        90.94       101.95        13.87        14.30        55.59 
TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD 
       21.67       129.24        28.80        19.76        61.51        47.28 
TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK 
      103.27       103.17        16.96       204.62        96.23       144.76 
TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR 
      203.01       167.87        47.54       248.61        43.23       103.56 
TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AE 
      136.44        41.59        53.26       122.73        25.84        26.73 
TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19J TCGA-ER-A19L 
       13.81        23.47       138.77        12.59         6.41       131.08 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY 
       44.05        79.99        80.32       216.92        48.59       228.59 
TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB 
      202.62        20.91        28.08         7.76        27.68        48.85 
TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ 
       53.52        40.27        15.45         9.70        32.71        47.38 
TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU 
      101.26        74.73        11.41       148.77        53.16        26.56 
TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 
       49.48        27.06        27.02         0.20        76.41       120.46 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
      117.93        84.72        64.41        62.76        32.48        39.58 

  C8A MUTATED C8A WILD-TYPE 
         2.56          0.20 
  C8A MUTATED C8A WILD-TYPE 
       357.37        345.96 
  C8A MUTATED C8A WILD-TYPE 
       24.180        48.805 
[1] "2.6 - 357.4 (24.2)" "0.2 - 346.0 (48.8)"
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A148    TCGA-D9-A149 
"C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-D9-A1JW    TCGA-D9-A1JX    TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-DA-A1I0    TCGA-DA-A1I1    TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5 
  "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-DA-A1I7    TCGA-DA-A1I8    TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" 
   TCGA-DA-A3F2    TCGA-DA-A3F3    TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" 
   TCGA-EE-A17Z    TCGA-EE-A181    TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185 
"C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-EE-A20B    TCGA-EE-A20F    TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-EE-A29D    TCGA-EE-A29E    TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M 
  "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" 
   TCGA-EE-A29N    TCGA-EE-A29P    TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-EE-A29T    TCGA-EE-A29V    TCGA-EE-A29X    TCGA-EE-A2A0    TCGA-EE-A2A1 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6    TCGA-EE-A2GB    TCGA-EE-A2GC 
  "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" 
   TCGA-EE-A2GD    TCGA-EE-A2GE    TCGA-EE-A2GH    TCGA-EE-A2GI    TCGA-EE-A2GJ 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-EE-A2GK    TCGA-EE-A2GL    TCGA-EE-A2GM    TCGA-EE-A2GN    TCGA-EE-A2GO 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-EE-A2GP    TCGA-EE-A2GR    TCGA-EE-A2GS    TCGA-EE-A2GT    TCGA-EE-A2GU 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED"   "C8A MUTATED" 
   TCGA-EE-A2M5    TCGA-EE-A2M6    TCGA-EE-A2M7    TCGA-EE-A2M8    TCGA-EE-A2MC 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-EE-A2MD    TCGA-EE-A2ME    TCGA-EE-A2MG    TCGA-EE-A2MH    TCGA-EE-A2MI 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-EE-A2MJ    TCGA-EE-A2MK    TCGA-EE-A2ML    TCGA-EE-A2MM    TCGA-EE-A2MN 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-EE-A2MP    TCGA-EE-A2MQ    TCGA-EE-A2MR    TCGA-EE-A2MS    TCGA-EE-A2MT 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-EE-A2MU    TCGA-EE-A3AA    TCGA-EE-A3AB    TCGA-EE-A3AC    TCGA-EE-A3AD 
"C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" 
   TCGA-EE-A3AE    TCGA-EE-A3AF    TCGA-EE-A3AG    TCGA-EE-A3AH    TCGA-ER-A19D 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19N    TCGA-ER-A1A1 
  "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-ER-A3ET    TCGA-FS-A1YW    TCGA-FS-A1YX    TCGA-FS-A1YY    TCGA-FS-A1Z0 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-FS-A1Z3    TCGA-FS-A1Z4    TCGA-FS-A1Z7    TCGA-FS-A1ZA    TCGA-FS-A1ZB 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-FS-A1ZC    TCGA-FS-A1ZD    TCGA-FS-A1ZE    TCGA-FS-A1ZF    TCGA-FS-A1ZG 
  "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-FS-A1ZH    TCGA-FS-A1ZJ    TCGA-FS-A1ZK    TCGA-FS-A1ZM    TCGA-FS-A1ZP 
"C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-FS-A1ZQ    TCGA-FS-A1ZR    TCGA-FS-A1ZS    TCGA-FS-A1ZT    TCGA-FS-A1ZU 
  "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-FS-A1ZW    TCGA-FS-A1ZY    TCGA-FS-A1ZZ    TCGA-FW-A3I3    TCGA-GN-A261 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265    TCGA-GN-A266    TCGA-GN-A267 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" 
   TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A148    TCGA-D9-A149 
"C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-D9-A1JW    TCGA-D9-A1JX    TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-DA-A1I0    TCGA-DA-A1I1    TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5 
  "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-DA-A1I7    TCGA-DA-A1I8    TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" 
   TCGA-DA-A3F2    TCGA-DA-A3F3    TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" 
   TCGA-EE-A17Z    TCGA-EE-A181    TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185 
"C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-EE-A20B    TCGA-EE-A20F    TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-EE-A29D    TCGA-EE-A29E    TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M 
  "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" 
   TCGA-EE-A29N    TCGA-EE-A29P    TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-EE-A29T    TCGA-EE-A29V    TCGA-EE-A29X    TCGA-EE-A2A0    TCGA-EE-A2A1 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6    TCGA-EE-A2GB    TCGA-EE-A2GC 
  "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" 
   TCGA-EE-A2GD    TCGA-EE-A2GE    TCGA-EE-A2GH    TCGA-EE-A2GI    TCGA-EE-A2GJ 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-EE-A2GK    TCGA-EE-A2GL    TCGA-EE-A2GM    TCGA-EE-A2GN    TCGA-EE-A2GO 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-EE-A2GP    TCGA-EE-A2GR    TCGA-EE-A2GS    TCGA-EE-A2GT    TCGA-EE-A2GU 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED"   "C8A MUTATED" 
   TCGA-EE-A2M5    TCGA-EE-A2M6    TCGA-EE-A2M7    TCGA-EE-A2M8    TCGA-EE-A2MC 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-EE-A2MD    TCGA-EE-A2ME    TCGA-EE-A2MG    TCGA-EE-A2MH    TCGA-EE-A2MI 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-EE-A2MJ    TCGA-EE-A2MK    TCGA-EE-A2ML    TCGA-EE-A2MM    TCGA-EE-A2MN 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-EE-A2MP    TCGA-EE-A2MQ    TCGA-EE-A2MR    TCGA-EE-A2MS    TCGA-EE-A2MT 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-EE-A2MU    TCGA-EE-A3AA    TCGA-EE-A3AB    TCGA-EE-A3AC    TCGA-EE-A3AD 
"C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" 
   TCGA-EE-A3AE    TCGA-EE-A3AF    TCGA-EE-A3AG    TCGA-EE-A3AH    TCGA-ER-A19D 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19N    TCGA-ER-A1A1 
  "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-ER-A3ET    TCGA-FS-A1YW    TCGA-FS-A1YX    TCGA-FS-A1YY    TCGA-FS-A1Z0 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-FS-A1Z3    TCGA-FS-A1Z4    TCGA-FS-A1Z7    TCGA-FS-A1ZA    TCGA-FS-A1ZB 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-FS-A1ZC    TCGA-FS-A1ZD    TCGA-FS-A1ZE    TCGA-FS-A1ZF    TCGA-FS-A1ZG 
  "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-FS-A1ZH    TCGA-FS-A1ZJ    TCGA-FS-A1ZK    TCGA-FS-A1ZM    TCGA-FS-A1ZP 
"C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-FS-A1ZQ    TCGA-FS-A1ZR    TCGA-FS-A1ZS    TCGA-FS-A1ZT    TCGA-FS-A1ZU 
  "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-FS-A1ZW    TCGA-FS-A1ZY    TCGA-FS-A1ZZ    TCGA-FW-A3I3    TCGA-GN-A261 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265    TCGA-GN-A266    TCGA-GN-A267 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" 
   TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A148    TCGA-D9-A149 
"C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-D9-A1JW    TCGA-D9-A1JX    TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-DA-A1I0    TCGA-DA-A1I1    TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5 
  "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-DA-A1I7    TCGA-DA-A1I8    TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" 
   TCGA-DA-A3F2    TCGA-DA-A3F3    TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" 
   TCGA-EE-A17Z    TCGA-EE-A181    TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185 
"C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-EE-A20B    TCGA-EE-A20F    TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-EE-A29D    TCGA-EE-A29E    TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M 
  "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" 
   TCGA-EE-A29N    TCGA-EE-A29P    TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-EE-A29T    TCGA-EE-A29V    TCGA-EE-A29X    TCGA-EE-A2A0    TCGA-EE-A2A1 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6    TCGA-EE-A2GB    TCGA-EE-A2GC 
  "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" 
   TCGA-EE-A2GD    TCGA-EE-A2GE    TCGA-EE-A2GH    TCGA-EE-A2GI    TCGA-EE-A2GJ 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-EE-A2GK    TCGA-EE-A2GL    TCGA-EE-A2GM    TCGA-EE-A2GN    TCGA-EE-A2GO 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-EE-A2GP    TCGA-EE-A2GR    TCGA-EE-A2GS    TCGA-EE-A2GT    TCGA-EE-A2GU 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED"   "C8A MUTATED" 
   TCGA-EE-A2M5    TCGA-EE-A2M6    TCGA-EE-A2M7    TCGA-EE-A2M8    TCGA-EE-A2MC 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-EE-A2MD    TCGA-EE-A2ME    TCGA-EE-A2MG    TCGA-EE-A2MH    TCGA-EE-A2MI 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-EE-A2MJ    TCGA-EE-A2MK    TCGA-EE-A2ML    TCGA-EE-A2MM    TCGA-EE-A2MN 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-EE-A2MP    TCGA-EE-A2MQ    TCGA-EE-A2MR    TCGA-EE-A2MS    TCGA-EE-A2MT 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-EE-A2MU    TCGA-EE-A3AA    TCGA-EE-A3AB    TCGA-EE-A3AC    TCGA-EE-A3AD 
"C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" 
   TCGA-EE-A3AE    TCGA-EE-A3AF    TCGA-EE-A3AG    TCGA-EE-A3AH    TCGA-ER-A19D 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19N    TCGA-ER-A1A1 
  "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-ER-A3ET    TCGA-FS-A1YW    TCGA-FS-A1YX    TCGA-FS-A1YY    TCGA-FS-A1Z0 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-FS-A1Z3    TCGA-FS-A1Z4    TCGA-FS-A1Z7    TCGA-FS-A1ZA    TCGA-FS-A1ZB 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-FS-A1ZC    TCGA-FS-A1ZD    TCGA-FS-A1ZE    TCGA-FS-A1ZF    TCGA-FS-A1ZG 
  "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-FS-A1ZH    TCGA-FS-A1ZJ    TCGA-FS-A1ZK    TCGA-FS-A1ZM    TCGA-FS-A1ZP 
"C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-FS-A1ZQ    TCGA-FS-A1ZR    TCGA-FS-A1ZS    TCGA-FS-A1ZT    TCGA-FS-A1ZU 
  "C8A MUTATED" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-FS-A1ZW    TCGA-FS-A1ZY    TCGA-FS-A1ZZ    TCGA-FW-A3I3    TCGA-GN-A261 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
   TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265    TCGA-GN-A266    TCGA-GN-A267 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE"   "C8A MUTATED" "C8A WILD-TYPE" 
   TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
"C8A WILD-TYPE" "C8A WILD-TYPE" "C8A WILD-TYPE" 
[1] "hr=" "1.3"
D25V2, continuous
               vv
clus            DISTANT METASTASIS PRIMARY TUMOR
  C8A MUTATED                    3             0
  C8A WILD-TYPE                 19             1
               vv
clus            REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  C8A MUTATED                                                                                          4
  C8A WILD-TYPE                                                                                       28
               vv
clus            REGIONAL LYMPH NODE
  C8A MUTATED                    13
  C8A WILD-TYPE                  91
D25V3, multiclass
                                                                                          clus
vv                                                                                         C8A MUTATED
  DISTANT METASTASIS                                                                                 3
  PRIMARY TUMOR                                                                                      0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)           4
  REGIONAL LYMPH NODE                                                                               13
                                                                                          clus
vv                                                                                         C8A WILD-TYPE
  DISTANT METASTASIS                                                                                  19
  PRIMARY TUMOR                                                                                        1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            28
  REGIONAL LYMPH NODE                                                                                 91
D25V4, binary
               cls
clus             0  1
  C8A MUTATED    4 16
  C8A WILD-TYPE 56 83
[1] "tbl2"
               cls
clus            [,1] [,2]
  C8A MUTATED      4   16
  C8A WILD-TYPE   56   83
        clus
vv       C8A MUTATED C8A WILD-TYPE
  FEMALE           4            56
  MALE            16            83
               vv
clus             M0  M1 M1A M1B M1C
  C8A MUTATED    16   0   1   0   0
  C8A WILD-TYPE 122   2   0   2   2
D25V5, multiclass
               vv
clus            N0 N1 N1A N1B N2A N2B N2C N3 NX
  C8A MUTATED   10  0   0   2   1   1   1  2  0
  C8A WILD-TYPE 77  2   7  13   3   9   4 12  2
D25V6, multiclass
D25V7, continuous
               vv
clus            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  C8A MUTATED             2       0        1        2        2         1
  C8A WILD-TYPE           1      17        9       10       16         6
               vv
clus            STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  C8A MUTATED           1         0         0          0          4          3
  C8A WILD-TYPE         8         7         7          6         13         18
               vv
clus            STAGE IV
  C8A MUTATED          0
  C8A WILD-TYPE        5
D25V8, multiclass

Clustering(26) Variable = FUT9 MUTATION ANALYSIS
D26V1, survival
                sevent
clus2             0  1
  FUT9 MUTATED    5 12
  FUT9 WILD-TYPE 68 73
  FUT9 MUTATED FUT9 WILD-TYPE 
            17            141 
  FUT9 MUTATED FUT9 WILD-TYPE 
            12             73 
$`FUT9 MUTATED`
TCGA-D3-A1Q5 TCGA-DA-A1HV TCGA-EE-A181 TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29N 
      112.54        48.89        33.73        13.97        39.62        18.58 
TCGA-EE-A2GC TCGA-EE-A2GR TCGA-EE-A2M5 TCGA-EE-A2MI TCGA-EE-A2MS TCGA-FS-A1YW 
       43.23        14.30        21.67       204.62       136.44       216.92 
TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1ZC TCGA-FS-A1ZJ TCGA-GN-A268 
      228.59       202.62       357.37        47.38        62.76 

$`FUT9 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.57        71.80       121.22        28.08        31.59        43.40 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 
       65.49        23.77        11.87        48.76        12.10        58.03 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
       71.24        60.23        24.53         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
       49.74         2.70         6.38        36.03       117.17        20.38 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
      194.83       176.55        35.93       107.34        61.18        53.92 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       65.92        23.44        68.09        28.60        10.49       215.44 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       15.68        29.82         8.65        14.70        26.86         4.93 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29H 
      109.64        78.87       168.26        63.32        47.84        32.19 
TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
        2.56        44.35        56.42        37.35        14.47        55.89 
TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
      345.96        25.87        17.92        46.82        78.94        24.43 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH 
       39.25        58.75        47.54       314.53       135.91       182.01 
TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN 
       22.55        89.33        54.71        55.00        75.48        90.94 
TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M6 
      101.95        13.87        55.59        19.56        67.13       129.24 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG 
       28.80        19.76        61.51        47.28       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN 
       16.96        96.23       144.76       203.01       167.87        47.54 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA 
      248.61        43.23       103.56        41.59        53.26         4.24 
TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG 
      122.73        25.84         3.68        26.73        13.81        23.47 
TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N 
      138.77        12.59        26.37         6.41       131.08        44.05 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YX TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 
       79.99        80.32        48.59        20.91        28.08         7.76 
TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG 
       27.68        48.85        53.52        40.27        15.45         9.70 
TCGA-FS-A1ZH TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR 
       32.71        23.93       101.26        74.73       133.55        11.41 
TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ 
      148.77        53.16        26.56        49.48        27.06        27.02 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        0.20        76.41       120.46       117.93        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A26A TCGA-GN-A26D 
       64.41        32.48        39.58 

  FUT9 MUTATED FUT9 WILD-TYPE 
         13.97           0.20 
  FUT9 MUTATED FUT9 WILD-TYPE 
        357.37         345.96 
  FUT9 MUTATED FUT9 WILD-TYPE 
         48.89          47.54 
[1] "14.0 - 357.4 (48.9)" "0.2 - 346.0 (47.5)" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"FUT9 WILD-TYPE"   "FUT9 MUTATED" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE"   "FUT9 MUTATED" "FUT9 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"FUT9 WILD-TYPE"   "FUT9 MUTATED" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE"   "FUT9 MUTATED"   "FUT9 MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE"   "FUT9 MUTATED" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"FUT9 WILD-TYPE"   "FUT9 MUTATED" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"FUT9 WILD-TYPE"   "FUT9 MUTATED" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"FUT9 WILD-TYPE"   "FUT9 MUTATED" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE"   "FUT9 MUTATED" "FUT9 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE"   "FUT9 MUTATED" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"FUT9 WILD-TYPE"   "FUT9 MUTATED" "FUT9 WILD-TYPE"   "FUT9 MUTATED" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
  "FUT9 MUTATED" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE"   "FUT9 MUTATED" "FUT9 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
  "FUT9 MUTATED" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE"   "FUT9 MUTATED" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"FUT9 WILD-TYPE"   "FUT9 MUTATED" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE"   "FUT9 MUTATED" "FUT9 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"FUT9 WILD-TYPE"   "FUT9 MUTATED" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE"   "FUT9 MUTATED"   "FUT9 MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE"   "FUT9 MUTATED" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"FUT9 WILD-TYPE"   "FUT9 MUTATED" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"FUT9 WILD-TYPE"   "FUT9 MUTATED" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"FUT9 WILD-TYPE"   "FUT9 MUTATED" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE"   "FUT9 MUTATED" "FUT9 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE"   "FUT9 MUTATED" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"FUT9 WILD-TYPE"   "FUT9 MUTATED" "FUT9 WILD-TYPE"   "FUT9 MUTATED" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
  "FUT9 MUTATED" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE"   "FUT9 MUTATED" "FUT9 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
  "FUT9 MUTATED" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE"   "FUT9 MUTATED" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"FUT9 WILD-TYPE"   "FUT9 MUTATED" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE"   "FUT9 MUTATED" "FUT9 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"FUT9 WILD-TYPE"   "FUT9 MUTATED" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE"   "FUT9 MUTATED"   "FUT9 MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE"   "FUT9 MUTATED" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"FUT9 WILD-TYPE"   "FUT9 MUTATED" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"FUT9 WILD-TYPE"   "FUT9 MUTATED" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"FUT9 WILD-TYPE"   "FUT9 MUTATED" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE"   "FUT9 MUTATED" "FUT9 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE"   "FUT9 MUTATED" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"FUT9 WILD-TYPE"   "FUT9 MUTATED" "FUT9 WILD-TYPE"   "FUT9 MUTATED" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
  "FUT9 MUTATED" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE"   "FUT9 MUTATED" "FUT9 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
  "FUT9 MUTATED" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" "FUT9 WILD-TYPE"   "FUT9 MUTATED" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"FUT9 WILD-TYPE" "FUT9 WILD-TYPE" 
[1] "hr=" "1.3"
D26V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  FUT9 MUTATED                    3             0
  FUT9 WILD-TYPE                 19             1
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  FUT9 MUTATED                                                                                          1
  FUT9 WILD-TYPE                                                                                       31
                vv
clus             REGIONAL LYMPH NODE
  FUT9 MUTATED                    13
  FUT9 WILD-TYPE                  91
D26V3, multiclass
                                                                                          clus
vv                                                                                         FUT9 MUTATED
  DISTANT METASTASIS                                                                                  3
  PRIMARY TUMOR                                                                                       0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            1
  REGIONAL LYMPH NODE                                                                                13
                                                                                          clus
vv                                                                                         FUT9 WILD-TYPE
  DISTANT METASTASIS                                                                                   19
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             31
  REGIONAL LYMPH NODE                                                                                  91
D26V4, binary
                cls
clus              0  1
  FUT9 MUTATED    6 11
  FUT9 WILD-TYPE 54 88
[1] "tbl2"
                cls
clus             [,1] [,2]
  FUT9 MUTATED      6   11
  FUT9 WILD-TYPE   54   88
        clus
vv       FUT9 MUTATED FUT9 WILD-TYPE
  FEMALE            6             54
  MALE             11             88
                vv
clus              M0  M1 M1A M1B M1C
  FUT9 MUTATED    17   0   0   0   0
  FUT9 WILD-TYPE 121   2   1   2   2
D26V5, multiclass
                vv
clus             N0 N1 N1A N1B N2A N2B N2C N3 NX
  FUT9 MUTATED   14  0   0   2   0   1   0  0  0
  FUT9 WILD-TYPE 73  2   7  13   4   9   5 14  2
D26V6, multiclass
D26V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  FUT9 MUTATED             2       2        1        1        3         1
  FUT9 WILD-TYPE           1      15        9       11       15         6
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  FUT9 MUTATED           3         0         0          0          2          1
  FUT9 WILD-TYPE         6         7         7          6         15         20
                vv
clus             STAGE IV
  FUT9 MUTATED          0
  FUT9 WILD-TYPE        5
D26V8, multiclass

Clustering(27) Variable = ZNF679 MUTATION ANALYSIS
D27V1, survival
                  sevent
clus2               0  1
  ZNF679 MUTATED    9  6
  ZNF679 WILD-TYPE 64 79
  ZNF679 MUTATED ZNF679 WILD-TYPE 
              15              143 
  ZNF679 MUTATED ZNF679 WILD-TYPE 
               6               79 
$`ZNF679 MUTATED`
TCGA-DA-A1HW TCGA-DA-A1I7 TCGA-DA-A3F8 TCGA-EE-A182 TCGA-EE-A29M TCGA-EE-A29S 
       36.03        61.18        15.68        14.70        44.35        55.89 
TCGA-EE-A2GC TCGA-EE-A2GR TCGA-EE-A2GU TCGA-EE-A2MD TCGA-EE-A2MS TCGA-EE-A2MT 
       43.23        14.30        67.13        47.28       136.44        41.59 
TCGA-FS-A1ZK TCGA-FS-A1ZZ TCGA-GN-A266 
       23.93        27.02        10.09 

$`ZNF679 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HY 
      148.31        49.74         2.70         6.38        48.89       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I8 
       20.38       194.83       176.55        35.93       107.34        53.92 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       65.92        23.44        68.09        28.60        10.49       215.44 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
       29.82         8.65        33.73        26.86         4.93       109.64 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
       78.87       168.26        63.32        47.84        13.97        39.62 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
       32.19         2.56        18.58        56.42        37.35        14.47 
TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
      345.96        25.87        17.92        46.82        78.94        24.43 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH 
       39.25        58.75        47.54       314.53       135.91       182.01 
TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN 
       22.55        89.33        54.71        55.00        75.48        90.94 
TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2M5 TCGA-EE-A2M6 
      101.95        13.87        55.59        19.56        21.67       129.24 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH 
       28.80        19.76        61.51       103.27       103.17        16.96 
TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN 
      204.62        96.23       144.76       203.01       167.87        47.54 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB 
      248.61        43.23       103.56        53.26         4.24       122.73 
TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH 
       25.84         3.68        26.73        13.81        23.47       138.77 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 
       12.59        26.37         6.41       131.08        44.05        79.99 
TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 
       80.32       216.92        48.59       228.59       202.62        20.91 
TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD 
       28.08         7.76        27.68        48.85       357.37        53.52 
TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZM 
       40.27        15.45         9.70        32.71        47.38       101.26 
TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU 
       74.73       133.55        11.41       148.77        53.16        26.56 
TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
       49.48        27.06         0.20        76.41       120.46       117.93 
TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       84.72        64.41        62.76        32.48        39.58 

  ZNF679 MUTATED ZNF679 WILD-TYPE 
           10.09             0.20 
  ZNF679 MUTATED ZNF679 WILD-TYPE 
          136.44           357.37 
  ZNF679 MUTATED ZNF679 WILD-TYPE 
           41.59            48.76 
[1] "10.1 - 136.4 (41.6)" "0.2 - 357.4 (48.8)" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE"   "ZNF679 MUTATED" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE"   "ZNF679 MUTATED" "ZNF679 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE"   "ZNF679 MUTATED" "ZNF679 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE"   "ZNF679 MUTATED" "ZNF679 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE"   "ZNF679 MUTATED" "ZNF679 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE"   "ZNF679 MUTATED" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"ZNF679 WILD-TYPE"   "ZNF679 MUTATED" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"ZNF679 WILD-TYPE"   "ZNF679 MUTATED" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
  "ZNF679 MUTATED" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE"   "ZNF679 MUTATED" "ZNF679 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE"   "ZNF679 MUTATED" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
  "ZNF679 MUTATED" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"ZNF679 WILD-TYPE"   "ZNF679 MUTATED" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE"   "ZNF679 MUTATED" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"ZNF679 WILD-TYPE"   "ZNF679 MUTATED" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE"   "ZNF679 MUTATED" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE"   "ZNF679 MUTATED" "ZNF679 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE"   "ZNF679 MUTATED" "ZNF679 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE"   "ZNF679 MUTATED" "ZNF679 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE"   "ZNF679 MUTATED" "ZNF679 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE"   "ZNF679 MUTATED" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"ZNF679 WILD-TYPE"   "ZNF679 MUTATED" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"ZNF679 WILD-TYPE"   "ZNF679 MUTATED" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
  "ZNF679 MUTATED" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE"   "ZNF679 MUTATED" "ZNF679 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE"   "ZNF679 MUTATED" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
  "ZNF679 MUTATED" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"ZNF679 WILD-TYPE"   "ZNF679 MUTATED" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE"   "ZNF679 MUTATED" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"ZNF679 WILD-TYPE"   "ZNF679 MUTATED" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE"   "ZNF679 MUTATED" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE"   "ZNF679 MUTATED" "ZNF679 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE"   "ZNF679 MUTATED" "ZNF679 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE"   "ZNF679 MUTATED" "ZNF679 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE"   "ZNF679 MUTATED" "ZNF679 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE"   "ZNF679 MUTATED" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"ZNF679 WILD-TYPE"   "ZNF679 MUTATED" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"ZNF679 WILD-TYPE"   "ZNF679 MUTATED" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
  "ZNF679 MUTATED" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE"   "ZNF679 MUTATED" "ZNF679 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE"   "ZNF679 MUTATED" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
  "ZNF679 MUTATED" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"ZNF679 WILD-TYPE"   "ZNF679 MUTATED" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE"   "ZNF679 MUTATED" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"ZNF679 WILD-TYPE"   "ZNF679 MUTATED" "ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"ZNF679 WILD-TYPE" "ZNF679 WILD-TYPE" 
[1] "hr=" "1.1"
D27V2, continuous
                  vv
clus               DISTANT METASTASIS PRIMARY TUMOR
  ZNF679 MUTATED                    3             1
  ZNF679 WILD-TYPE                 19             0
                  vv
clus               REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  ZNF679 MUTATED                                                                                          3
  ZNF679 WILD-TYPE                                                                                       29
                  vv
clus               REGIONAL LYMPH NODE
  ZNF679 MUTATED                     8
  ZNF679 WILD-TYPE                  96
D27V3, multiclass
                                                                                          clus
vv                                                                                         ZNF679 MUTATED
  DISTANT METASTASIS                                                                                    3
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              3
  REGIONAL LYMPH NODE                                                                                   8
                                                                                          clus
vv                                                                                         ZNF679 WILD-TYPE
  DISTANT METASTASIS                                                                                     19
  PRIMARY TUMOR                                                                                           0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               29
  REGIONAL LYMPH NODE                                                                                    96
D27V4, binary
                  cls
clus                0  1
  ZNF679 MUTATED    5 10
  ZNF679 WILD-TYPE 55 89
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF679 MUTATED      5   10
  ZNF679 WILD-TYPE   55   89
        clus
vv       ZNF679 MUTATED ZNF679 WILD-TYPE
  FEMALE              5               55
  MALE               10               89
                  vv
clus                M0  M1 M1A M1B M1C
  ZNF679 MUTATED    14   0   0   0   0
  ZNF679 WILD-TYPE 124   2   1   2   2
D27V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2A N2B N2C N3 NX
  ZNF679 MUTATED   10  0   0   2   0   2   0  0  0
  ZNF679 WILD-TYPE 77  2   7  13   4   8   5 14  2
D27V6, multiclass
D27V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  ZNF679 MUTATED             0       0        1        2        4         1
  ZNF679 WILD-TYPE           3      17        9       10       14         6
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  ZNF679 MUTATED           2         0         0          0          3
  ZNF679 WILD-TYPE         7         7         7          6         14
                  vv
clus               STAGE IIIC STAGE IV
  ZNF679 MUTATED            1        0
  ZNF679 WILD-TYPE         20        5
D27V8, multiclass

Clustering(28) Variable = NRK MUTATION ANALYSIS
D28V1, survival
               sevent
clus2            0  1
  NRK MUTATED    8 12
  NRK WILD-TYPE 65 73
  NRK MUTATED NRK WILD-TYPE 
           20           138 
  NRK MUTATED NRK WILD-TYPE 
           12            73 
$`NRK MUTATED`
TCGA-D3-A2J8 TCGA-D3-A2JF TCGA-DA-A1I7 TCGA-DA-A1IC TCGA-EE-A17Z TCGA-EE-A183 
       65.49        48.76        61.18        68.09         8.65        26.86 
TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A29Q TCGA-EE-A2A1 TCGA-EE-A2A5 TCGA-EE-A2GR 
        4.93        78.87        37.35        78.94        39.25        14.30 
TCGA-EE-A2GS TCGA-EE-A2MD TCGA-EE-A2MQ TCGA-EE-A3AF TCGA-ER-A1A1 TCGA-FS-A1YY 
       55.59        47.28        43.23        13.81        79.99       228.59 
TCGA-FS-A1ZC TCGA-FS-A1ZK 
      357.37        23.93 

$`NRK WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC 
       43.40        23.77        11.87        12.10        58.03        71.24 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 TCGA-D9-A149 
       60.23        24.53         9.30        21.47       148.31        49.74 
TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        2.70         6.38        48.89        36.03       117.17        20.38 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I8 TCGA-DA-A1IA 
      194.83       176.55        35.93       107.34        53.92        65.92 
TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X 
       23.44        28.60        10.49       215.44        15.68        29.82 
TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A20B TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
       33.73        14.70       109.64       168.26        63.32        47.84 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N 
       13.97        39.62        32.19         2.56        44.35        18.58 
TCGA-EE-A29P TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X 
       56.42        14.47        55.89       345.96        25.87        17.92 
TCGA-EE-A2A0 TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD 
       46.82        24.43        58.75        47.54        43.23       314.53 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL 
      135.91       182.01        22.55        89.33        54.71        55.00 
TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GT TCGA-EE-A2GU 
       75.48        90.94       101.95        13.87        19.56        67.13 
TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2ME 
       21.67       129.24        28.80        19.76        61.51       103.27 
TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML 
      103.17        16.96       204.62        96.23       144.76       203.01 
TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT 
      167.87        47.54       248.61       103.56       136.44        41.59 
TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE 
       53.26         4.24       122.73        25.84         3.68        26.73 
TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
       23.47       138.77        12.59        26.37         6.41       131.08 
TCGA-ER-A19N TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1Z0 TCGA-FS-A1Z3 
       44.05        80.32       216.92        48.59       202.62        20.91 
TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZE 
       28.08         7.76        27.68        48.85        53.52        40.27 
TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZM TCGA-FS-A1ZP 
       15.45         9.70        32.71        47.38       101.26        74.73 
TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW 
      133.55        11.41       148.77        53.16        26.56        49.48 
TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
       27.06        27.02         0.20        76.41       120.46       117.93 
TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       84.72        10.09        64.41        62.76        32.48        39.58 

  NRK MUTATED NRK WILD-TYPE 
         4.93          0.20 
  NRK MUTATED NRK WILD-TYPE 
       357.37        345.96 
  NRK MUTATED NRK WILD-TYPE 
        48.02         47.54 
[1] "4.9 - 357.4 (48.0)" "0.2 - 346.0 (47.5)"
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"NRK WILD-TYPE" "NRK WILD-TYPE"   "NRK MUTATED" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
  "NRK MUTATED" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A148    TCGA-D9-A149 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-D9-A1JW    TCGA-D9-A1JX    TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-DA-A1I0    TCGA-DA-A1I1    TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-DA-A1I7    TCGA-DA-A1I8    TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC 
  "NRK MUTATED" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE"   "NRK MUTATED" 
   TCGA-DA-A3F2    TCGA-DA-A3F3    TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-EE-A17Z    TCGA-EE-A181    TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185 
  "NRK MUTATED" "NRK WILD-TYPE" "NRK WILD-TYPE"   "NRK MUTATED"   "NRK MUTATED" 
   TCGA-EE-A20B    TCGA-EE-A20F    TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C 
"NRK WILD-TYPE"   "NRK MUTATED" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-EE-A29D    TCGA-EE-A29E    TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-EE-A29N    TCGA-EE-A29P    TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S 
"NRK WILD-TYPE" "NRK WILD-TYPE"   "NRK MUTATED" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-EE-A29T    TCGA-EE-A29V    TCGA-EE-A29X    TCGA-EE-A2A0    TCGA-EE-A2A1 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE"   "NRK MUTATED" 
   TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6    TCGA-EE-A2GB    TCGA-EE-A2GC 
"NRK WILD-TYPE"   "NRK MUTATED" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-EE-A2GD    TCGA-EE-A2GE    TCGA-EE-A2GH    TCGA-EE-A2GI    TCGA-EE-A2GJ 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-EE-A2GK    TCGA-EE-A2GL    TCGA-EE-A2GM    TCGA-EE-A2GN    TCGA-EE-A2GO 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-EE-A2GP    TCGA-EE-A2GR    TCGA-EE-A2GS    TCGA-EE-A2GT    TCGA-EE-A2GU 
"NRK WILD-TYPE"   "NRK MUTATED"   "NRK MUTATED" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-EE-A2M5    TCGA-EE-A2M6    TCGA-EE-A2M7    TCGA-EE-A2M8    TCGA-EE-A2MC 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-EE-A2MD    TCGA-EE-A2ME    TCGA-EE-A2MG    TCGA-EE-A2MH    TCGA-EE-A2MI 
  "NRK MUTATED" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-EE-A2MJ    TCGA-EE-A2MK    TCGA-EE-A2ML    TCGA-EE-A2MM    TCGA-EE-A2MN 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-EE-A2MP    TCGA-EE-A2MQ    TCGA-EE-A2MR    TCGA-EE-A2MS    TCGA-EE-A2MT 
"NRK WILD-TYPE"   "NRK MUTATED" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-EE-A2MU    TCGA-EE-A3AA    TCGA-EE-A3AB    TCGA-EE-A3AC    TCGA-EE-A3AD 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-EE-A3AE    TCGA-EE-A3AF    TCGA-EE-A3AG    TCGA-EE-A3AH    TCGA-ER-A19D 
"NRK WILD-TYPE"   "NRK MUTATED" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19N    TCGA-ER-A1A1 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE"   "NRK MUTATED" 
   TCGA-ER-A3ET    TCGA-FS-A1YW    TCGA-FS-A1YX    TCGA-FS-A1YY    TCGA-FS-A1Z0 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE"   "NRK MUTATED" "NRK WILD-TYPE" 
   TCGA-FS-A1Z3    TCGA-FS-A1Z4    TCGA-FS-A1Z7    TCGA-FS-A1ZA    TCGA-FS-A1ZB 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-FS-A1ZC    TCGA-FS-A1ZD    TCGA-FS-A1ZE    TCGA-FS-A1ZF    TCGA-FS-A1ZG 
  "NRK MUTATED" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-FS-A1ZH    TCGA-FS-A1ZJ    TCGA-FS-A1ZK    TCGA-FS-A1ZM    TCGA-FS-A1ZP 
"NRK WILD-TYPE" "NRK WILD-TYPE"   "NRK MUTATED" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-FS-A1ZQ    TCGA-FS-A1ZR    TCGA-FS-A1ZS    TCGA-FS-A1ZT    TCGA-FS-A1ZU 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-FS-A1ZW    TCGA-FS-A1ZY    TCGA-FS-A1ZZ    TCGA-FW-A3I3    TCGA-GN-A261 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265    TCGA-GN-A266    TCGA-GN-A267 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"NRK WILD-TYPE" "NRK WILD-TYPE"   "NRK MUTATED" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
  "NRK MUTATED" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A148    TCGA-D9-A149 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-D9-A1JW    TCGA-D9-A1JX    TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-DA-A1I0    TCGA-DA-A1I1    TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-DA-A1I7    TCGA-DA-A1I8    TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC 
  "NRK MUTATED" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE"   "NRK MUTATED" 
   TCGA-DA-A3F2    TCGA-DA-A3F3    TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-EE-A17Z    TCGA-EE-A181    TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185 
  "NRK MUTATED" "NRK WILD-TYPE" "NRK WILD-TYPE"   "NRK MUTATED"   "NRK MUTATED" 
   TCGA-EE-A20B    TCGA-EE-A20F    TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C 
"NRK WILD-TYPE"   "NRK MUTATED" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-EE-A29D    TCGA-EE-A29E    TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-EE-A29N    TCGA-EE-A29P    TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S 
"NRK WILD-TYPE" "NRK WILD-TYPE"   "NRK MUTATED" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-EE-A29T    TCGA-EE-A29V    TCGA-EE-A29X    TCGA-EE-A2A0    TCGA-EE-A2A1 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE"   "NRK MUTATED" 
   TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6    TCGA-EE-A2GB    TCGA-EE-A2GC 
"NRK WILD-TYPE"   "NRK MUTATED" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-EE-A2GD    TCGA-EE-A2GE    TCGA-EE-A2GH    TCGA-EE-A2GI    TCGA-EE-A2GJ 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-EE-A2GK    TCGA-EE-A2GL    TCGA-EE-A2GM    TCGA-EE-A2GN    TCGA-EE-A2GO 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-EE-A2GP    TCGA-EE-A2GR    TCGA-EE-A2GS    TCGA-EE-A2GT    TCGA-EE-A2GU 
"NRK WILD-TYPE"   "NRK MUTATED"   "NRK MUTATED" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-EE-A2M5    TCGA-EE-A2M6    TCGA-EE-A2M7    TCGA-EE-A2M8    TCGA-EE-A2MC 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-EE-A2MD    TCGA-EE-A2ME    TCGA-EE-A2MG    TCGA-EE-A2MH    TCGA-EE-A2MI 
  "NRK MUTATED" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-EE-A2MJ    TCGA-EE-A2MK    TCGA-EE-A2ML    TCGA-EE-A2MM    TCGA-EE-A2MN 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-EE-A2MP    TCGA-EE-A2MQ    TCGA-EE-A2MR    TCGA-EE-A2MS    TCGA-EE-A2MT 
"NRK WILD-TYPE"   "NRK MUTATED" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-EE-A2MU    TCGA-EE-A3AA    TCGA-EE-A3AB    TCGA-EE-A3AC    TCGA-EE-A3AD 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-EE-A3AE    TCGA-EE-A3AF    TCGA-EE-A3AG    TCGA-EE-A3AH    TCGA-ER-A19D 
"NRK WILD-TYPE"   "NRK MUTATED" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19N    TCGA-ER-A1A1 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE"   "NRK MUTATED" 
   TCGA-ER-A3ET    TCGA-FS-A1YW    TCGA-FS-A1YX    TCGA-FS-A1YY    TCGA-FS-A1Z0 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE"   "NRK MUTATED" "NRK WILD-TYPE" 
   TCGA-FS-A1Z3    TCGA-FS-A1Z4    TCGA-FS-A1Z7    TCGA-FS-A1ZA    TCGA-FS-A1ZB 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-FS-A1ZC    TCGA-FS-A1ZD    TCGA-FS-A1ZE    TCGA-FS-A1ZF    TCGA-FS-A1ZG 
  "NRK MUTATED" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-FS-A1ZH    TCGA-FS-A1ZJ    TCGA-FS-A1ZK    TCGA-FS-A1ZM    TCGA-FS-A1ZP 
"NRK WILD-TYPE" "NRK WILD-TYPE"   "NRK MUTATED" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-FS-A1ZQ    TCGA-FS-A1ZR    TCGA-FS-A1ZS    TCGA-FS-A1ZT    TCGA-FS-A1ZU 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-FS-A1ZW    TCGA-FS-A1ZY    TCGA-FS-A1ZZ    TCGA-FW-A3I3    TCGA-GN-A261 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265    TCGA-GN-A266    TCGA-GN-A267 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"NRK WILD-TYPE" "NRK WILD-TYPE"   "NRK MUTATED" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
  "NRK MUTATED" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A148    TCGA-D9-A149 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-D9-A1JW    TCGA-D9-A1JX    TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-DA-A1I0    TCGA-DA-A1I1    TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-DA-A1I7    TCGA-DA-A1I8    TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC 
  "NRK MUTATED" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE"   "NRK MUTATED" 
   TCGA-DA-A3F2    TCGA-DA-A3F3    TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-EE-A17Z    TCGA-EE-A181    TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185 
  "NRK MUTATED" "NRK WILD-TYPE" "NRK WILD-TYPE"   "NRK MUTATED"   "NRK MUTATED" 
   TCGA-EE-A20B    TCGA-EE-A20F    TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C 
"NRK WILD-TYPE"   "NRK MUTATED" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-EE-A29D    TCGA-EE-A29E    TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-EE-A29N    TCGA-EE-A29P    TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S 
"NRK WILD-TYPE" "NRK WILD-TYPE"   "NRK MUTATED" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-EE-A29T    TCGA-EE-A29V    TCGA-EE-A29X    TCGA-EE-A2A0    TCGA-EE-A2A1 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE"   "NRK MUTATED" 
   TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6    TCGA-EE-A2GB    TCGA-EE-A2GC 
"NRK WILD-TYPE"   "NRK MUTATED" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-EE-A2GD    TCGA-EE-A2GE    TCGA-EE-A2GH    TCGA-EE-A2GI    TCGA-EE-A2GJ 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-EE-A2GK    TCGA-EE-A2GL    TCGA-EE-A2GM    TCGA-EE-A2GN    TCGA-EE-A2GO 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-EE-A2GP    TCGA-EE-A2GR    TCGA-EE-A2GS    TCGA-EE-A2GT    TCGA-EE-A2GU 
"NRK WILD-TYPE"   "NRK MUTATED"   "NRK MUTATED" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-EE-A2M5    TCGA-EE-A2M6    TCGA-EE-A2M7    TCGA-EE-A2M8    TCGA-EE-A2MC 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-EE-A2MD    TCGA-EE-A2ME    TCGA-EE-A2MG    TCGA-EE-A2MH    TCGA-EE-A2MI 
  "NRK MUTATED" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-EE-A2MJ    TCGA-EE-A2MK    TCGA-EE-A2ML    TCGA-EE-A2MM    TCGA-EE-A2MN 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-EE-A2MP    TCGA-EE-A2MQ    TCGA-EE-A2MR    TCGA-EE-A2MS    TCGA-EE-A2MT 
"NRK WILD-TYPE"   "NRK MUTATED" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-EE-A2MU    TCGA-EE-A3AA    TCGA-EE-A3AB    TCGA-EE-A3AC    TCGA-EE-A3AD 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-EE-A3AE    TCGA-EE-A3AF    TCGA-EE-A3AG    TCGA-EE-A3AH    TCGA-ER-A19D 
"NRK WILD-TYPE"   "NRK MUTATED" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19N    TCGA-ER-A1A1 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE"   "NRK MUTATED" 
   TCGA-ER-A3ET    TCGA-FS-A1YW    TCGA-FS-A1YX    TCGA-FS-A1YY    TCGA-FS-A1Z0 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE"   "NRK MUTATED" "NRK WILD-TYPE" 
   TCGA-FS-A1Z3    TCGA-FS-A1Z4    TCGA-FS-A1Z7    TCGA-FS-A1ZA    TCGA-FS-A1ZB 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-FS-A1ZC    TCGA-FS-A1ZD    TCGA-FS-A1ZE    TCGA-FS-A1ZF    TCGA-FS-A1ZG 
  "NRK MUTATED" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-FS-A1ZH    TCGA-FS-A1ZJ    TCGA-FS-A1ZK    TCGA-FS-A1ZM    TCGA-FS-A1ZP 
"NRK WILD-TYPE" "NRK WILD-TYPE"   "NRK MUTATED" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-FS-A1ZQ    TCGA-FS-A1ZR    TCGA-FS-A1ZS    TCGA-FS-A1ZT    TCGA-FS-A1ZU 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-FS-A1ZW    TCGA-FS-A1ZY    TCGA-FS-A1ZZ    TCGA-FW-A3I3    TCGA-GN-A261 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265    TCGA-GN-A266    TCGA-GN-A267 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
   TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
"NRK WILD-TYPE" "NRK WILD-TYPE" "NRK WILD-TYPE" 
[1] "hr=" "1"  
D28V2, continuous
               vv
clus            DISTANT METASTASIS PRIMARY TUMOR
  NRK MUTATED                    4             0
  NRK WILD-TYPE                 18             1
               vv
clus            REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  NRK MUTATED                                                                                          5
  NRK WILD-TYPE                                                                                       27
               vv
clus            REGIONAL LYMPH NODE
  NRK MUTATED                    11
  NRK WILD-TYPE                  93
D28V3, multiclass
                                                                                          clus
vv                                                                                         NRK MUTATED
  DISTANT METASTASIS                                                                                 4
  PRIMARY TUMOR                                                                                      0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)           5
  REGIONAL LYMPH NODE                                                                               11
                                                                                          clus
vv                                                                                         NRK WILD-TYPE
  DISTANT METASTASIS                                                                                  18
  PRIMARY TUMOR                                                                                        1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            27
  REGIONAL LYMPH NODE                                                                                 93
D28V4, binary
               cls
clus             0  1
  NRK MUTATED    6 14
  NRK WILD-TYPE 54 85
[1] "tbl2"
               cls
clus            [,1] [,2]
  NRK MUTATED      6   14
  NRK WILD-TYPE   54   85
        clus
vv       NRK MUTATED NRK WILD-TYPE
  FEMALE           6            54
  MALE            14            85
               vv
clus             M0  M1 M1A M1B M1C
  NRK MUTATED    19   0   0   0   0
  NRK WILD-TYPE 119   2   1   2   2
D28V5, multiclass
               vv
clus            N0 N1 N1A N1B N2A N2B N2C N3 NX
  NRK MUTATED   14  0   0   0   1   1   1  2  0
  NRK WILD-TYPE 73  2   7  15   3   9   4 12  2
D28V6, multiclass
D28V7, continuous
               vv
clus            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  NRK MUTATED             1       1        1        4        4         1
  NRK WILD-TYPE           2      16        9        8       14         6
               vv
clus            STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  NRK MUTATED           2         0         0          1          2          2
  NRK WILD-TYPE         7         7         7          5         15         19
               vv
clus            STAGE IV
  NRK MUTATED          0
  NRK WILD-TYPE        5
D28V8, multiclass

Clustering(29) Variable = CDH9 MUTATION ANALYSIS
D29V1, survival
                sevent
clus2             0  1
  CDH9 MUTATED   14 12
  CDH9 WILD-TYPE 59 73
  CDH9 MUTATED CDH9 WILD-TYPE 
            26            132 
  CDH9 MUTATED CDH9 WILD-TYPE 
            12             73 
$`CDH9 MUTATED`
TCGA-D9-A1JW TCGA-DA-A3F5 TCGA-EE-A17X TCGA-EE-A181 TCGA-EE-A20B TCGA-EE-A29D 
        2.70       215.44        29.82        33.73       109.64        13.97 
TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A2A0 TCGA-EE-A2A6 TCGA-EE-A2GC 
       39.62         2.56        44.35        46.82        58.75        43.23 
TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GL TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2MM 
       22.55        89.33        55.00        21.67       129.24       167.87 
TCGA-EE-A2MP TCGA-EE-A2MS TCGA-EE-A3AH TCGA-ER-A19N TCGA-FS-A1Z0 TCGA-FS-A1ZB 
      248.61       136.44       138.77        44.05       202.62        48.85 
TCGA-FS-A1ZZ TCGA-GN-A268 
       27.02        62.76 

$`CDH9 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
      148.31        49.74         6.38        48.89        36.03       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
       20.38       194.83       176.55        35.93       107.34        61.18 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       53.92        65.92        23.44        68.09        28.60        10.49 
TCGA-DA-A3F8 TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20F 
       15.68         8.65        14.70        26.86         4.93        78.87 
TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29H TCGA-EE-A29N TCGA-EE-A29P 
      168.26        63.32        47.84        32.19        18.58        56.42 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X 
       37.35        14.47        55.89       345.96        25.87        17.92 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2GB TCGA-EE-A2GD TCGA-EE-A2GE 
       78.94        24.43        39.25        47.54       314.53       135.91 
TCGA-EE-A2GH TCGA-EE-A2GK TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP 
      182.01        54.71        75.48        90.94       101.95        13.87 
TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M7 TCGA-EE-A2M8 
       14.30        55.59        19.56        67.13        28.80        19.76 
TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI 
       61.51        47.28       103.27       103.17        16.96       204.62 
TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MN TCGA-EE-A2MQ TCGA-EE-A2MR 
       96.23       144.76       203.01        47.54        43.23       103.56 
TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD 
       41.59        53.26         4.24       122.73        25.84         3.68 
TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       26.73        13.81        23.47        12.59        26.37         6.41 
TCGA-ER-A19L TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY 
      131.08        79.99        80.32       216.92        48.59       228.59 
TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZC TCGA-FS-A1ZD 
       20.91        28.08         7.76        27.68       357.37        53.52 
TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK 
       40.27        15.45         9.70        32.71        47.38        23.93 
TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT 
      101.26        74.73       133.55        11.41       148.77        53.16 
TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 
       26.56        49.48        27.06         0.20        76.41       120.46 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A26A TCGA-GN-A26D 
      117.93        84.72        10.09        64.41        32.48        39.58 

  CDH9 MUTATED CDH9 WILD-TYPE 
          2.56           0.20 
  CDH9 MUTATED CDH9 WILD-TYPE 
        248.61         357.37 
  CDH9 MUTATED CDH9 WILD-TYPE 
        47.835         47.540 
[1] "2.6 - 248.6 (47.8)" "0.2 - 357.4 (47.5)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED"   "CDH9 MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"CDH9 WILD-TYPE"   "CDH9 MUTATED"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"CDH9 WILD-TYPE"   "CDH9 MUTATED"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"CDH9 WILD-TYPE"   "CDH9 MUTATED"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED"   "CDH9 MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"CDH9 WILD-TYPE"   "CDH9 MUTATED"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"CDH9 WILD-TYPE"   "CDH9 MUTATED"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"CDH9 WILD-TYPE"   "CDH9 MUTATED"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED"   "CDH9 MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"CDH9 WILD-TYPE"   "CDH9 MUTATED"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"CDH9 WILD-TYPE"   "CDH9 MUTATED"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"CDH9 WILD-TYPE"   "CDH9 MUTATED"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
[1] "hr=" "1.4"
D29V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  CDH9 MUTATED                    3             1
  CDH9 WILD-TYPE                 19             0
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  CDH9 MUTATED                                                                                          1
  CDH9 WILD-TYPE                                                                                       31
                vv
clus             REGIONAL LYMPH NODE
  CDH9 MUTATED                    21
  CDH9 WILD-TYPE                  83
D29V3, multiclass
                                                                                          clus
vv                                                                                         CDH9 MUTATED
  DISTANT METASTASIS                                                                                  3
  PRIMARY TUMOR                                                                                       1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            1
  REGIONAL LYMPH NODE                                                                                21
                                                                                          clus
vv                                                                                         CDH9 WILD-TYPE
  DISTANT METASTASIS                                                                                   19
  PRIMARY TUMOR                                                                                         0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             31
  REGIONAL LYMPH NODE                                                                                  83
D29V4, binary
                cls
clus              0  1
  CDH9 MUTATED   10 16
  CDH9 WILD-TYPE 50 83
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH9 MUTATED     10   16
  CDH9 WILD-TYPE   50   83
        clus
vv       CDH9 MUTATED CDH9 WILD-TYPE
  FEMALE           10             50
  MALE             16             83
                vv
clus              M0  M1 M1A M1B M1C
  CDH9 MUTATED    25   0   0   0   0
  CDH9 WILD-TYPE 113   2   1   2   2
D29V5, multiclass
                vv
clus             N0 N1 N1A N1B N2A N2B N2C N3 NX
  CDH9 MUTATED   20  0   0   2   1   0   0  2  0
  CDH9 WILD-TYPE 67  2   7  13   3  10   5 12  2
D29V6, multiclass
D29V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  CDH9 MUTATED             0       4        5        1        5         2
  CDH9 WILD-TYPE           3      13        5       11       13         5
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  CDH9 MUTATED           3         0         0          0          1          3
  CDH9 WILD-TYPE         6         7         7          6         16         18
                vv
clus             STAGE IV
  CDH9 MUTATED          0
  CDH9 WILD-TYPE        5
D29V8, multiclass

Clustering(30) Variable = PRAMEF11 MUTATION ANALYSIS
D30V1, survival
                    sevent
clus2                 0  1
  PRAMEF11 MUTATED    5 10
  PRAMEF11 WILD-TYPE 68 75
  PRAMEF11 MUTATED PRAMEF11 WILD-TYPE 
                15                143 
  PRAMEF11 MUTATED PRAMEF11 WILD-TYPE 
                10                 75 
$`PRAMEF11 MUTATED`
TCGA-D3-A1Q9 TCGA-D3-A2JD TCGA-EE-A29D TCGA-EE-A29X TCGA-EE-A2GB TCGA-EE-A2GO 
       31.59        11.87        13.97        17.92        47.54       101.95 
TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A3AE TCGA-ER-A19F TCGA-FS-A1ZA TCGA-FS-A1ZB 
       43.23       103.56        26.73        26.37        27.68        48.85 
TCGA-FS-A1ZM TCGA-FS-A1ZZ TCGA-GN-A266 
      101.26        27.02        10.09 

$`PRAMEF11 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2J6 
       16.57       112.54        71.80       121.22        28.08        43.40 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC 
       65.49        23.77        48.76        12.10        58.03        71.24 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 TCGA-D9-A149 
       60.23        24.53         9.30        21.47       148.31        49.74 
TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        2.70         6.38        48.89        36.03       117.17        20.38 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
      194.83       176.55        35.93       107.34        61.18        53.92 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       65.92        23.44        68.09        28.60        10.49       215.44 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
       15.68        29.82         8.65        33.73        14.70        26.86 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.93       109.64        78.87       168.26        63.32        47.84 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
       39.62        32.19         2.56        44.35        18.58        56.42 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A2A0 
       37.35        14.47        55.89       345.96        25.87        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GC TCGA-EE-A2GD 
       78.94        24.43        39.25        58.75        43.23       314.53 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL 
      135.91       182.01        22.55        89.33        54.71        55.00 
TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT 
       75.48        90.94        13.87        14.30        55.59        19.56 
TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC 
       67.13        21.67       129.24        28.80        19.76        61.51 
TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ 
       47.28       103.27       103.17        16.96       204.62        96.23 
TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MS 
      144.76       203.01       167.87        47.54       248.61       136.44 
TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD 
       41.59        53.26         4.24       122.73        25.84         3.68 
TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19J TCGA-ER-A19L 
       13.81        23.47       138.77        12.59         6.41       131.08 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY 
       44.05        79.99        80.32       216.92        48.59       228.59 
TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZC TCGA-FS-A1ZD 
      202.62        20.91        28.08         7.76       357.37        53.52 
TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK 
       40.27        15.45         9.70        32.71        47.38        23.93 
TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU 
       74.73       133.55        11.41       148.77        53.16        26.56 
TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
       49.48        27.06         0.20        76.41       120.46       117.93 
TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       84.72        64.41        62.76        32.48        39.58 

  PRAMEF11 MUTATED PRAMEF11 WILD-TYPE 
             10.09               0.20 
  PRAMEF11 MUTATED PRAMEF11 WILD-TYPE 
            103.56             357.37 
  PRAMEF11 MUTATED PRAMEF11 WILD-TYPE 
             27.68              48.76 
[1] "10.1 - 103.6 (27.7)" "0.2 - 357.4 (48.8)" 
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE"   "PRAMEF11 MUTATED" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JF         TCGA-D3-A2JK 
  "PRAMEF11 MUTATED" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-D3-A3C6         TCGA-D3-A3CC         TCGA-D3-A3CE 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-D3-A3CF         TCGA-D3-A3MO         TCGA-D3-A3MV 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-D9-A148         TCGA-D9-A149         TCGA-D9-A1JW 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-D9-A1JX         TCGA-DA-A1HV         TCGA-DA-A1HW 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-DA-A1HY         TCGA-DA-A1I0         TCGA-DA-A1I1 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-DA-A1I2         TCGA-DA-A1I4         TCGA-DA-A1I5 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-DA-A1I7         TCGA-DA-A1I8         TCGA-DA-A1IA 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-DA-A1IB         TCGA-DA-A1IC         TCGA-DA-A3F2 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-DA-A3F3         TCGA-DA-A3F5         TCGA-DA-A3F8 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A17X         TCGA-EE-A17Z         TCGA-EE-A181 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A182         TCGA-EE-A183         TCGA-EE-A185 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A20B         TCGA-EE-A20F         TCGA-EE-A20H 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A29A         TCGA-EE-A29C         TCGA-EE-A29D 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE"   "PRAMEF11 MUTATED" 
        TCGA-EE-A29E         TCGA-EE-A29H         TCGA-EE-A29L 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A29M         TCGA-EE-A29N         TCGA-EE-A29P 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A29Q         TCGA-EE-A29R         TCGA-EE-A29S 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A29T         TCGA-EE-A29V         TCGA-EE-A29X 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE"   "PRAMEF11 MUTATED" 
        TCGA-EE-A2A0         TCGA-EE-A2A1         TCGA-EE-A2A2 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A2A5         TCGA-EE-A2A6         TCGA-EE-A2GB 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE"   "PRAMEF11 MUTATED" 
        TCGA-EE-A2GC         TCGA-EE-A2GD         TCGA-EE-A2GE 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A2GH         TCGA-EE-A2GI         TCGA-EE-A2GJ 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A2GK         TCGA-EE-A2GL         TCGA-EE-A2GM 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A2GN         TCGA-EE-A2GO         TCGA-EE-A2GP 
"PRAMEF11 WILD-TYPE"   "PRAMEF11 MUTATED" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A2GR         TCGA-EE-A2GS         TCGA-EE-A2GT 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A2GU         TCGA-EE-A2M5         TCGA-EE-A2M6 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A2M7         TCGA-EE-A2M8         TCGA-EE-A2MC 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A2MD         TCGA-EE-A2ME         TCGA-EE-A2MG 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A2MH         TCGA-EE-A2MI         TCGA-EE-A2MJ 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A2MK         TCGA-EE-A2ML         TCGA-EE-A2MM 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A2MN         TCGA-EE-A2MP         TCGA-EE-A2MQ 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE"   "PRAMEF11 MUTATED" 
        TCGA-EE-A2MR         TCGA-EE-A2MS         TCGA-EE-A2MT 
  "PRAMEF11 MUTATED" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A2MU         TCGA-EE-A3AA         TCGA-EE-A3AB 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A3AC         TCGA-EE-A3AD         TCGA-EE-A3AE 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE"   "PRAMEF11 MUTATED" 
        TCGA-EE-A3AF         TCGA-EE-A3AG         TCGA-EE-A3AH 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-ER-A19D         TCGA-ER-A19F         TCGA-ER-A19J 
"PRAMEF11 WILD-TYPE"   "PRAMEF11 MUTATED" "PRAMEF11 WILD-TYPE" 
        TCGA-ER-A19L         TCGA-ER-A19N         TCGA-ER-A1A1 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-ER-A3ET         TCGA-FS-A1YW         TCGA-FS-A1YX 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-FS-A1YY         TCGA-FS-A1Z0         TCGA-FS-A1Z3 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-FS-A1Z4         TCGA-FS-A1Z7         TCGA-FS-A1ZA 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE"   "PRAMEF11 MUTATED" 
        TCGA-FS-A1ZB         TCGA-FS-A1ZC         TCGA-FS-A1ZD 
  "PRAMEF11 MUTATED" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZQ 
  "PRAMEF11 MUTATED" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-FS-A1ZR         TCGA-FS-A1ZS         TCGA-FS-A1ZT 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-FS-A1ZU         TCGA-FS-A1ZW         TCGA-FS-A1ZY 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-FS-A1ZZ         TCGA-FW-A3I3         TCGA-GN-A261 
  "PRAMEF11 MUTATED" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-GN-A262         TCGA-GN-A264         TCGA-GN-A265 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-GN-A266         TCGA-GN-A267         TCGA-GN-A268 
  "PRAMEF11 MUTATED" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-GN-A26A         TCGA-GN-A26D 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE"   "PRAMEF11 MUTATED" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JF         TCGA-D3-A2JK 
  "PRAMEF11 MUTATED" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-D3-A3C6         TCGA-D3-A3CC         TCGA-D3-A3CE 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-D3-A3CF         TCGA-D3-A3MO         TCGA-D3-A3MV 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-D9-A148         TCGA-D9-A149         TCGA-D9-A1JW 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-D9-A1JX         TCGA-DA-A1HV         TCGA-DA-A1HW 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-DA-A1HY         TCGA-DA-A1I0         TCGA-DA-A1I1 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-DA-A1I2         TCGA-DA-A1I4         TCGA-DA-A1I5 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-DA-A1I7         TCGA-DA-A1I8         TCGA-DA-A1IA 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-DA-A1IB         TCGA-DA-A1IC         TCGA-DA-A3F2 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-DA-A3F3         TCGA-DA-A3F5         TCGA-DA-A3F8 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A17X         TCGA-EE-A17Z         TCGA-EE-A181 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A182         TCGA-EE-A183         TCGA-EE-A185 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A20B         TCGA-EE-A20F         TCGA-EE-A20H 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A29A         TCGA-EE-A29C         TCGA-EE-A29D 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE"   "PRAMEF11 MUTATED" 
        TCGA-EE-A29E         TCGA-EE-A29H         TCGA-EE-A29L 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A29M         TCGA-EE-A29N         TCGA-EE-A29P 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A29Q         TCGA-EE-A29R         TCGA-EE-A29S 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A29T         TCGA-EE-A29V         TCGA-EE-A29X 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE"   "PRAMEF11 MUTATED" 
        TCGA-EE-A2A0         TCGA-EE-A2A1         TCGA-EE-A2A2 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A2A5         TCGA-EE-A2A6         TCGA-EE-A2GB 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE"   "PRAMEF11 MUTATED" 
        TCGA-EE-A2GC         TCGA-EE-A2GD         TCGA-EE-A2GE 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A2GH         TCGA-EE-A2GI         TCGA-EE-A2GJ 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A2GK         TCGA-EE-A2GL         TCGA-EE-A2GM 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A2GN         TCGA-EE-A2GO         TCGA-EE-A2GP 
"PRAMEF11 WILD-TYPE"   "PRAMEF11 MUTATED" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A2GR         TCGA-EE-A2GS         TCGA-EE-A2GT 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A2GU         TCGA-EE-A2M5         TCGA-EE-A2M6 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A2M7         TCGA-EE-A2M8         TCGA-EE-A2MC 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A2MD         TCGA-EE-A2ME         TCGA-EE-A2MG 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A2MH         TCGA-EE-A2MI         TCGA-EE-A2MJ 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A2MK         TCGA-EE-A2ML         TCGA-EE-A2MM 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A2MN         TCGA-EE-A2MP         TCGA-EE-A2MQ 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE"   "PRAMEF11 MUTATED" 
        TCGA-EE-A2MR         TCGA-EE-A2MS         TCGA-EE-A2MT 
  "PRAMEF11 MUTATED" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A2MU         TCGA-EE-A3AA         TCGA-EE-A3AB 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A3AC         TCGA-EE-A3AD         TCGA-EE-A3AE 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE"   "PRAMEF11 MUTATED" 
        TCGA-EE-A3AF         TCGA-EE-A3AG         TCGA-EE-A3AH 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-ER-A19D         TCGA-ER-A19F         TCGA-ER-A19J 
"PRAMEF11 WILD-TYPE"   "PRAMEF11 MUTATED" "PRAMEF11 WILD-TYPE" 
        TCGA-ER-A19L         TCGA-ER-A19N         TCGA-ER-A1A1 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-ER-A3ET         TCGA-FS-A1YW         TCGA-FS-A1YX 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-FS-A1YY         TCGA-FS-A1Z0         TCGA-FS-A1Z3 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-FS-A1Z4         TCGA-FS-A1Z7         TCGA-FS-A1ZA 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE"   "PRAMEF11 MUTATED" 
        TCGA-FS-A1ZB         TCGA-FS-A1ZC         TCGA-FS-A1ZD 
  "PRAMEF11 MUTATED" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZQ 
  "PRAMEF11 MUTATED" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-FS-A1ZR         TCGA-FS-A1ZS         TCGA-FS-A1ZT 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-FS-A1ZU         TCGA-FS-A1ZW         TCGA-FS-A1ZY 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-FS-A1ZZ         TCGA-FW-A3I3         TCGA-GN-A261 
  "PRAMEF11 MUTATED" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-GN-A262         TCGA-GN-A264         TCGA-GN-A265 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-GN-A266         TCGA-GN-A267         TCGA-GN-A268 
  "PRAMEF11 MUTATED" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-GN-A26A         TCGA-GN-A26D 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE"   "PRAMEF11 MUTATED" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JF         TCGA-D3-A2JK 
  "PRAMEF11 MUTATED" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-D3-A3C6         TCGA-D3-A3CC         TCGA-D3-A3CE 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-D3-A3CF         TCGA-D3-A3MO         TCGA-D3-A3MV 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-D9-A148         TCGA-D9-A149         TCGA-D9-A1JW 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-D9-A1JX         TCGA-DA-A1HV         TCGA-DA-A1HW 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-DA-A1HY         TCGA-DA-A1I0         TCGA-DA-A1I1 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-DA-A1I2         TCGA-DA-A1I4         TCGA-DA-A1I5 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-DA-A1I7         TCGA-DA-A1I8         TCGA-DA-A1IA 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-DA-A1IB         TCGA-DA-A1IC         TCGA-DA-A3F2 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-DA-A3F3         TCGA-DA-A3F5         TCGA-DA-A3F8 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A17X         TCGA-EE-A17Z         TCGA-EE-A181 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A182         TCGA-EE-A183         TCGA-EE-A185 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A20B         TCGA-EE-A20F         TCGA-EE-A20H 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A29A         TCGA-EE-A29C         TCGA-EE-A29D 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE"   "PRAMEF11 MUTATED" 
        TCGA-EE-A29E         TCGA-EE-A29H         TCGA-EE-A29L 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A29M         TCGA-EE-A29N         TCGA-EE-A29P 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A29Q         TCGA-EE-A29R         TCGA-EE-A29S 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A29T         TCGA-EE-A29V         TCGA-EE-A29X 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE"   "PRAMEF11 MUTATED" 
        TCGA-EE-A2A0         TCGA-EE-A2A1         TCGA-EE-A2A2 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A2A5         TCGA-EE-A2A6         TCGA-EE-A2GB 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE"   "PRAMEF11 MUTATED" 
        TCGA-EE-A2GC         TCGA-EE-A2GD         TCGA-EE-A2GE 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A2GH         TCGA-EE-A2GI         TCGA-EE-A2GJ 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A2GK         TCGA-EE-A2GL         TCGA-EE-A2GM 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A2GN         TCGA-EE-A2GO         TCGA-EE-A2GP 
"PRAMEF11 WILD-TYPE"   "PRAMEF11 MUTATED" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A2GR         TCGA-EE-A2GS         TCGA-EE-A2GT 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A2GU         TCGA-EE-A2M5         TCGA-EE-A2M6 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A2M7         TCGA-EE-A2M8         TCGA-EE-A2MC 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A2MD         TCGA-EE-A2ME         TCGA-EE-A2MG 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A2MH         TCGA-EE-A2MI         TCGA-EE-A2MJ 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A2MK         TCGA-EE-A2ML         TCGA-EE-A2MM 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A2MN         TCGA-EE-A2MP         TCGA-EE-A2MQ 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE"   "PRAMEF11 MUTATED" 
        TCGA-EE-A2MR         TCGA-EE-A2MS         TCGA-EE-A2MT 
  "PRAMEF11 MUTATED" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A2MU         TCGA-EE-A3AA         TCGA-EE-A3AB 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-EE-A3AC         TCGA-EE-A3AD         TCGA-EE-A3AE 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE"   "PRAMEF11 MUTATED" 
        TCGA-EE-A3AF         TCGA-EE-A3AG         TCGA-EE-A3AH 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-ER-A19D         TCGA-ER-A19F         TCGA-ER-A19J 
"PRAMEF11 WILD-TYPE"   "PRAMEF11 MUTATED" "PRAMEF11 WILD-TYPE" 
        TCGA-ER-A19L         TCGA-ER-A19N         TCGA-ER-A1A1 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-ER-A3ET         TCGA-FS-A1YW         TCGA-FS-A1YX 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-FS-A1YY         TCGA-FS-A1Z0         TCGA-FS-A1Z3 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-FS-A1Z4         TCGA-FS-A1Z7         TCGA-FS-A1ZA 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE"   "PRAMEF11 MUTATED" 
        TCGA-FS-A1ZB         TCGA-FS-A1ZC         TCGA-FS-A1ZD 
  "PRAMEF11 MUTATED" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZQ 
  "PRAMEF11 MUTATED" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-FS-A1ZR         TCGA-FS-A1ZS         TCGA-FS-A1ZT 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-FS-A1ZU         TCGA-FS-A1ZW         TCGA-FS-A1ZY 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-FS-A1ZZ         TCGA-FW-A3I3         TCGA-GN-A261 
  "PRAMEF11 MUTATED" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-GN-A262         TCGA-GN-A264         TCGA-GN-A265 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-GN-A266         TCGA-GN-A267         TCGA-GN-A268 
  "PRAMEF11 MUTATED" "PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
        TCGA-GN-A26A         TCGA-GN-A26D 
"PRAMEF11 WILD-TYPE" "PRAMEF11 WILD-TYPE" 
[1] "hr=" "2"  
D30V2, continuous
                    vv
clus                 DISTANT METASTASIS PRIMARY TUMOR
  PRAMEF11 MUTATED                    3             0
  PRAMEF11 WILD-TYPE                 19             1
                    vv
clus                 REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  PRAMEF11 MUTATED                                                                                          3
  PRAMEF11 WILD-TYPE                                                                                       29
                    vv
clus                 REGIONAL LYMPH NODE
  PRAMEF11 MUTATED                     9
  PRAMEF11 WILD-TYPE                  95
D30V3, multiclass
                                                                                          clus
vv                                                                                         PRAMEF11 MUTATED
  DISTANT METASTASIS                                                                                      3
  PRIMARY TUMOR                                                                                           0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                3
  REGIONAL LYMPH NODE                                                                                     9
                                                                                          clus
vv                                                                                         PRAMEF11 WILD-TYPE
  DISTANT METASTASIS                                                                                       19
  PRIMARY TUMOR                                                                                             1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                 29
  REGIONAL LYMPH NODE                                                                                      95
D30V4, binary
                    cls
clus                  0  1
  PRAMEF11 MUTATED    6  9
  PRAMEF11 WILD-TYPE 54 90
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  PRAMEF11 MUTATED      6    9
  PRAMEF11 WILD-TYPE   54   90
        clus
vv       PRAMEF11 MUTATED PRAMEF11 WILD-TYPE
  FEMALE                6                 54
  MALE                  9                 90
                    vv
clus                  M0  M1 M1A M1B M1C
  PRAMEF11 MUTATED    14   0   0   0   0
  PRAMEF11 WILD-TYPE 124   2   1   2   2
D30V5, multiclass
                    vv
clus                 N0 N1 N1A N1B N2A N2B N2C N3 NX
  PRAMEF11 MUTATED    7  0   1   2   2   0   2  0  0
  PRAMEF11 WILD-TYPE 80  2   6  13   2  10   3 14  2
D30V6, multiclass
D30V7, continuous
                    vv
clus                 I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  PRAMEF11 MUTATED             0       1        1        1        2         0
  PRAMEF11 WILD-TYPE           3      16        9       11       16         7
                    vv
clus                 STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  PRAMEF11 MUTATED           1         0         1          2          2
  PRAMEF11 WILD-TYPE         8         7         6          4         15
                    vv
clus                 STAGE IIIC STAGE IV
  PRAMEF11 MUTATED            2        0
  PRAMEF11 WILD-TYPE         19        5
D30V8, multiclass

Clustering(31) Variable = DDX3X MUTATION ANALYSIS
D31V1, survival
                 sevent
clus2              0  1
  DDX3X MUTATED   10  6
  DDX3X WILD-TYPE 63 79
  DDX3X MUTATED DDX3X WILD-TYPE 
             16             142 
  DDX3X MUTATED DDX3X WILD-TYPE 
              6              79 
$`DDX3X MUTATED`
TCGA-D3-A2J8 TCGA-D9-A148 TCGA-DA-A1I0 TCGA-DA-A3F8 TCGA-EE-A20B TCGA-EE-A29E 
       65.49       148.31        20.38        15.68       109.64        39.62 
TCGA-EE-A2A1 TCGA-EE-A2GC TCGA-EE-A2GN TCGA-EE-A2GP TCGA-EE-A2ML TCGA-EE-A2MU 
       78.94        43.23        90.94        13.87       203.01        53.26 
TCGA-EE-A3AA TCGA-EE-A3AF TCGA-FS-A1Z3 TCGA-FS-A1ZK 
        4.24        13.81        20.91        23.93 

$`DDX3X WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 
       43.40        23.77        11.87        48.76        12.10        58.03 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A149 
       71.24        60.23        24.53         9.30        21.47        49.74 
TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I1 
        2.70         6.38        48.89        36.03       117.17       194.83 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
      176.55        35.93       107.34        61.18        53.92        65.92 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A17X 
       23.44        68.09        28.60        10.49       215.44        29.82 
TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20F 
        8.65        33.73        14.70        26.86         4.93        78.87 
TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29L 
      168.26        63.32        47.84        13.97        32.19         2.56 
TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
       44.35        18.58        56.42        37.35        14.47        55.89 
TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A2 TCGA-EE-A2A5 
      345.96        25.87        17.92        46.82        24.43        39.25 
TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI 
       58.75        47.54       314.53       135.91       182.01        22.55 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GO TCGA-EE-A2GR 
       89.33        54.71        55.00        75.48       101.95        14.30 
TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 
       55.59        19.56        67.13        21.67       129.24        28.80 
TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH 
       19.76        61.51        47.28       103.27       103.17        16.96 
TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP 
      204.62        96.23       144.76       167.87        47.54       248.61 
TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A3AB TCGA-EE-A3AC 
       43.23       103.56       136.44        41.59       122.73        25.84 
TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F 
        3.68        26.73        23.47       138.77        12.59        26.37 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW 
        6.41       131.08        44.05        79.99        80.32       216.92 
TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA 
       48.59       228.59       202.62        28.08         7.76        27.68 
TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG 
       48.85       357.37        53.52        40.27        15.45         9.70 
TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR 
       32.71        47.38       101.26        74.73       133.55        11.41 
TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ 
      148.77        53.16        26.56        49.48        27.06        27.02 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        0.20        76.41       120.46       117.93        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       64.41        62.76        32.48        39.58 

  DDX3X MUTATED DDX3X WILD-TYPE 
           4.24            0.20 
  DDX3X MUTATED DDX3X WILD-TYPE 
         203.01          357.37 
  DDX3X MUTATED DDX3X WILD-TYPE 
         41.425          47.690 
[1] "4.2 - 203.0 (41.4)" "0.2 - 357.4 (47.7)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE"   "DDX3X MUTATED" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE"   "DDX3X MUTATED" "DDX3X WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"DDX3X WILD-TYPE"   "DDX3X MUTATED" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE"   "DDX3X MUTATED" "DDX3X WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"DDX3X WILD-TYPE"   "DDX3X MUTATED" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE"   "DDX3X MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
  "DDX3X MUTATED" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"DDX3X WILD-TYPE"   "DDX3X MUTATED" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE"   "DDX3X MUTATED" "DDX3X WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
  "DDX3X MUTATED" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"DDX3X WILD-TYPE"   "DDX3X MUTATED" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"DDX3X WILD-TYPE"   "DDX3X MUTATED"   "DDX3X MUTATED" "DDX3X WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE"   "DDX3X MUTATED" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"DDX3X WILD-TYPE"   "DDX3X MUTATED" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"DDX3X WILD-TYPE"   "DDX3X MUTATED" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE"   "DDX3X MUTATED" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE"   "DDX3X MUTATED" "DDX3X WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"DDX3X WILD-TYPE"   "DDX3X MUTATED" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE"   "DDX3X MUTATED" "DDX3X WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"DDX3X WILD-TYPE"   "DDX3X MUTATED" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE"   "DDX3X MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
  "DDX3X MUTATED" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"DDX3X WILD-TYPE"   "DDX3X MUTATED" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE"   "DDX3X MUTATED" "DDX3X WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
  "DDX3X MUTATED" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"DDX3X WILD-TYPE"   "DDX3X MUTATED" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"DDX3X WILD-TYPE"   "DDX3X MUTATED"   "DDX3X MUTATED" "DDX3X WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE"   "DDX3X MUTATED" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"DDX3X WILD-TYPE"   "DDX3X MUTATED" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"DDX3X WILD-TYPE"   "DDX3X MUTATED" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE"   "DDX3X MUTATED" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE"   "DDX3X MUTATED" "DDX3X WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"DDX3X WILD-TYPE"   "DDX3X MUTATED" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE"   "DDX3X MUTATED" "DDX3X WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"DDX3X WILD-TYPE"   "DDX3X MUTATED" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE"   "DDX3X MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
  "DDX3X MUTATED" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"DDX3X WILD-TYPE"   "DDX3X MUTATED" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE"   "DDX3X MUTATED" "DDX3X WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
  "DDX3X MUTATED" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"DDX3X WILD-TYPE"   "DDX3X MUTATED" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"DDX3X WILD-TYPE"   "DDX3X MUTATED"   "DDX3X MUTATED" "DDX3X WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE"   "DDX3X MUTATED" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"DDX3X WILD-TYPE"   "DDX3X MUTATED" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"DDX3X WILD-TYPE"   "DDX3X MUTATED" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
[1] "hr=" "1.3"
D31V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  DDX3X MUTATED                    2             0
  DDX3X WILD-TYPE                 20             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  DDX3X MUTATED                                                                                          5
  DDX3X WILD-TYPE                                                                                       27
                 vv
clus              REGIONAL LYMPH NODE
  DDX3X MUTATED                     9
  DDX3X WILD-TYPE                  95
D31V3, multiclass
                                                                                          clus
vv                                                                                         DDX3X MUTATED
  DISTANT METASTASIS                                                                                   2
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             5
  REGIONAL LYMPH NODE                                                                                  9
                                                                                          clus
vv                                                                                         DDX3X WILD-TYPE
  DISTANT METASTASIS                                                                                    20
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              27
  REGIONAL LYMPH NODE                                                                                   95
D31V4, binary
                 cls
clus               0  1
  DDX3X MUTATED    3 13
  DDX3X WILD-TYPE 57 86
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DDX3X MUTATED      3   13
  DDX3X WILD-TYPE   57   86
        clus
vv       DDX3X MUTATED DDX3X WILD-TYPE
  FEMALE             3              57
  MALE              13              86
                 vv
clus               M0  M1 M1A M1B M1C
  DDX3X MUTATED    11   0   1   1   0
  DDX3X WILD-TYPE 127   2   0   1   2
D31V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2A N2B N2C N3 NX
  DDX3X MUTATED    8  0   1   1   0   1   0  2  0
  DDX3X WILD-TYPE 79  2   6  14   4   9   5 12  2
D31V6, multiclass
D31V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DDX3X MUTATED             0       0        1        2        3         1
  DDX3X WILD-TYPE           3      17        9       10       15         6
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  DDX3X MUTATED           1         0         0          0          3
  DDX3X WILD-TYPE         8         7         7          6         14
                 vv
clus              STAGE IIIC STAGE IV
  DDX3X MUTATED            1        0
  DDX3X WILD-TYPE         20        5
D31V8, multiclass

Clustering(32) Variable = GRXCR1 MUTATION ANALYSIS
D32V1, survival
                  sevent
clus2               0  1
  GRXCR1 MUTATED    9  6
  GRXCR1 WILD-TYPE 64 79
  GRXCR1 MUTATED GRXCR1 WILD-TYPE 
              15              143 
  GRXCR1 MUTATED GRXCR1 WILD-TYPE 
               6               79 
$`GRXCR1 MUTATED`
TCGA-DA-A3F8 TCGA-EE-A29L TCGA-EE-A29P TCGA-EE-A29S TCGA-EE-A2GC TCGA-EE-A2GJ 
       15.68         2.56        56.42        55.89        43.23        89.33 
TCGA-EE-A2GO TCGA-EE-A2M5 TCGA-EE-A2MJ TCGA-EE-A2MS TCGA-EE-A3AE TCGA-FS-A1ZC 
      101.95        21.67        96.23       136.44        26.73       357.37 
TCGA-FS-A1ZZ TCGA-GN-A265 TCGA-GN-A268 
       27.02        84.72        62.76 

$`GRXCR1 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW 
      148.31        49.74         2.70         6.38        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       61.18        53.92        65.92        23.44        68.09        28.60 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 
       10.49       215.44        29.82         8.65        33.73        14.70 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A 
       26.86         4.93       109.64        78.87       168.26        63.32 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29N 
       47.84        13.97        39.62        32.19        44.35        18.58 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
       37.35        14.47       345.96        25.87        17.92        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GD 
       78.94        24.43        39.25        58.75        47.54       314.53 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM 
      135.91       182.01        22.55        54.71        55.00        75.48 
TCGA-EE-A2GN TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU 
       90.94        13.87        14.30        55.59        19.56        67.13 
TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME 
      129.24        28.80        19.76        61.51        47.28       103.27 
TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM 
      103.17        16.96       204.62       144.76       203.01       167.87 
TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MT TCGA-EE-A2MU 
       47.54       248.61        43.23       103.56        41.59        53.26 
TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AF TCGA-EE-A3AG 
        4.24       122.73        25.84         3.68        13.81        23.47 
TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N 
      138.77        12.59        26.37         6.41       131.08        44.05 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 
       79.99        80.32       216.92        48.59       228.59       202.62 
TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZD 
       20.91        28.08         7.76        27.68        48.85        53.52 
TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK 
       40.27        15.45         9.70        32.71        47.38        23.93 
TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT 
      101.26        74.73       133.55        11.41       148.77        53.16 
TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 
       26.56        49.48        27.06         0.20        76.41       120.46 
TCGA-GN-A264 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A26A TCGA-GN-A26D 
      117.93        10.09        64.41        32.48        39.58 

  GRXCR1 MUTATED GRXCR1 WILD-TYPE 
            2.56             0.20 
  GRXCR1 MUTATED GRXCR1 WILD-TYPE 
          357.37           345.96 
  GRXCR1 MUTATED GRXCR1 WILD-TYPE 
           56.42            47.38 
[1] "2.6 - 357.4 (56.4)" "0.2 - 346.0 (47.4)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
  "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
  "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
  "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
  "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
  "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
  "GRXCR1 MUTATED" "GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE"   "GRXCR1 MUTATED" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"GRXCR1 WILD-TYPE" "GRXCR1 WILD-TYPE" 
[1] "hr=" "1.8"
D32V2, continuous
                  vv
clus               DISTANT METASTASIS PRIMARY TUMOR
  GRXCR1 MUTATED                    2             0
  GRXCR1 WILD-TYPE                 20             1
                  vv
clus               REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  GRXCR1 MUTATED                                                                                          1
  GRXCR1 WILD-TYPE                                                                                       31
                  vv
clus               REGIONAL LYMPH NODE
  GRXCR1 MUTATED                    12
  GRXCR1 WILD-TYPE                  92
D32V3, multiclass
                                                                                          clus
vv                                                                                         GRXCR1 MUTATED
  DISTANT METASTASIS                                                                                    2
  PRIMARY TUMOR                                                                                         0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              1
  REGIONAL LYMPH NODE                                                                                  12
                                                                                          clus
vv                                                                                         GRXCR1 WILD-TYPE
  DISTANT METASTASIS                                                                                     20
  PRIMARY TUMOR                                                                                           1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               31
  REGIONAL LYMPH NODE                                                                                    92
D32V4, binary
                  cls
clus                0  1
  GRXCR1 MUTATED    5 10
  GRXCR1 WILD-TYPE 55 89
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GRXCR1 MUTATED      5   10
  GRXCR1 WILD-TYPE   55   89
        clus
vv       GRXCR1 MUTATED GRXCR1 WILD-TYPE
  FEMALE              5               55
  MALE               10               89
                  vv
clus                M0  M1 M1A M1B M1C
  GRXCR1 MUTATED    14   0   0   0   0
  GRXCR1 WILD-TYPE 124   2   1   2   2
D32V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2A N2B N2C N3 NX
  GRXCR1 MUTATED   12  0   0   0   0   1   0  1  0
  GRXCR1 WILD-TYPE 75  2   7  15   4   9   5 13  2
D32V6, multiclass
D32V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  GRXCR1 MUTATED             1       1        2        0        3         1
  GRXCR1 WILD-TYPE           2      16        8       12       15         6
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  GRXCR1 MUTATED           3         1         0          0          1
  GRXCR1 WILD-TYPE         6         6         7          6         16
                  vv
clus               STAGE IIIC STAGE IV
  GRXCR1 MUTATED            1        0
  GRXCR1 WILD-TYPE         20        5
D32V8, multiclass

Clustering(33) Variable = PRB2 MUTATION ANALYSIS
D33V1, survival
                sevent
clus2             0  1
  PRB2 MUTATED   13  9
  PRB2 WILD-TYPE 60 76
  PRB2 MUTATED PRB2 WILD-TYPE 
            22            136 
  PRB2 MUTATED PRB2 WILD-TYPE 
             9             76 
$`PRB2 MUTATED`
TCGA-D3-A2JF TCGA-D9-A1JW TCGA-DA-A3F3 TCGA-EE-A181 TCGA-EE-A29D TCGA-EE-A29E 
       48.76         2.70        10.49        33.73        13.97        39.62 
TCGA-EE-A29N TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A2A0 TCGA-EE-A2GC TCGA-EE-A2GI 
       18.58        55.89        25.87        46.82        43.23        22.55 
TCGA-EE-A2GJ TCGA-EE-A2GR TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A3AA TCGA-EE-A3AC 
       89.33        14.30       103.56       136.44         4.24        25.84 
TCGA-EE-A3AE TCGA-EE-A3AH TCGA-FS-A1ZA TCGA-FS-A1ZC 
       26.73       138.77        27.68       357.37 

$`PRB2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       43.40        65.49        23.77        11.87        12.10        58.03 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
       71.24        60.23        24.53         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
       49.74         6.38        48.89        36.03       117.17        20.38 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
      194.83       176.55        35.93       107.34        61.18        53.92 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F5 TCGA-DA-A3F8 
       65.92        23.44        68.09        28.60       215.44        15.68 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
       29.82         8.65        14.70        26.86         4.93       109.64 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29H TCGA-EE-A29L 
       78.87       168.26        63.32        47.84        32.19         2.56 
TCGA-EE-A29M TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29T TCGA-EE-A29X 
       44.35        56.42        37.35        14.47       345.96        17.92 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GD 
       78.94        24.43        39.25        58.75        47.54       314.53 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN 
      135.91       182.01        54.71        55.00        75.48        90.94 
TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 
      101.95        13.87        55.59        19.56        67.13        21.67 
TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME 
      129.24        28.80        19.76        61.51        47.28       103.27 
TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML 
      103.17        16.96       204.62        96.23       144.76       203.01 
TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MT TCGA-EE-A2MU 
      167.87        47.54       248.61        43.23        41.59        53.26 
TCGA-EE-A3AB TCGA-EE-A3AD TCGA-EE-A3AF TCGA-EE-A3AG TCGA-ER-A19D TCGA-ER-A19F 
      122.73         3.68        13.81        23.47        12.59        26.37 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW 
        6.41       131.08        44.05        79.99        80.32       216.92 
TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 
       48.59       228.59       202.62        20.91        28.08         7.76 
TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH 
       48.85        53.52        40.27        15.45         9.70        32.71 
TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR 
       47.38        23.93       101.26        74.73       133.55        11.41 
TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ 
      148.77        53.16        26.56        49.48        27.06        27.02 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        0.20        76.41       120.46       117.93        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       64.41        62.76        32.48        39.58 

  PRB2 MUTATED PRB2 WILD-TYPE 
           2.7            0.2 
  PRB2 MUTATED PRB2 WILD-TYPE 
        357.37         345.96 
  PRB2 MUTATED PRB2 WILD-TYPE 
        30.705         48.870 
[1] "2.7 - 357.4 (30.7)" "0.2 - 346.0 (48.9)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
  "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
  "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED"   "PRB2 MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"PRB2 WILD-TYPE"   "PRB2 MUTATED"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED"   "PRB2 MUTATED" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
  "PRB2 MUTATED" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
  "PRB2 MUTATED" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
  "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
  "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED"   "PRB2 MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"PRB2 WILD-TYPE"   "PRB2 MUTATED"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED"   "PRB2 MUTATED" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
  "PRB2 MUTATED" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
  "PRB2 MUTATED" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
  "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
  "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED"   "PRB2 MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"PRB2 WILD-TYPE"   "PRB2 MUTATED"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED"   "PRB2 MUTATED" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
  "PRB2 MUTATED" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
  "PRB2 MUTATED" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
[1] "hr=" "1.2"
D33V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  PRB2 MUTATED                    4             0
  PRB2 WILD-TYPE                 18             1
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  PRB2 MUTATED                                                                                          1
  PRB2 WILD-TYPE                                                                                       31
                vv
clus             REGIONAL LYMPH NODE
  PRB2 MUTATED                    17
  PRB2 WILD-TYPE                  87
D33V3, multiclass
                                                                                          clus
vv                                                                                         PRB2 MUTATED
  DISTANT METASTASIS                                                                                  4
  PRIMARY TUMOR                                                                                       0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            1
  REGIONAL LYMPH NODE                                                                                17
                                                                                          clus
vv                                                                                         PRB2 WILD-TYPE
  DISTANT METASTASIS                                                                                   18
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             31
  REGIONAL LYMPH NODE                                                                                  87
D33V4, binary
                cls
clus              0  1
  PRB2 MUTATED    4 18
  PRB2 WILD-TYPE 56 81
[1] "tbl2"
                cls
clus             [,1] [,2]
  PRB2 MUTATED      4   18
  PRB2 WILD-TYPE   56   81
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  FEMALE            4             56
  MALE             18             81
                vv
clus              M0  M1 M1A M1B M1C
  PRB2 MUTATED    20   0   0   0   0
  PRB2 WILD-TYPE 118   2   1   2   2
D33V5, multiclass
                vv
clus             N0 N1 N1A N1B N2A N2B N2C N3 NX
  PRB2 MUTATED   14  0   0   3   1   1   1  0  0
  PRB2 WILD-TYPE 73  2   7  12   3   9   4 14  2
D33V6, multiclass
D33V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  PRB2 MUTATED             1       1        4        0        4         2
  PRB2 WILD-TYPE           2      16        6       12       14         5
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  PRB2 MUTATED           1         0         0          0          3          2
  PRB2 WILD-TYPE         8         7         7          6         14         19
                vv
clus             STAGE IV
  PRB2 MUTATED          0
  PRB2 WILD-TYPE        5
D33V8, multiclass

Clustering(34) Variable = ELF5 MUTATION ANALYSIS
D34V1, survival
                sevent
clus2             0  1
  ELF5 MUTATED    2  3
  ELF5 WILD-TYPE 71 82
  ELF5 MUTATED ELF5 WILD-TYPE 
             5            153 
  ELF5 MUTATED ELF5 WILD-TYPE 
             3             82 
$`ELF5 MUTATED`
TCGA-D3-A2JD TCGA-EE-A2MS TCGA-EE-A3AA TCGA-FS-A1Z7 TCGA-FS-A1ZA 
       11.87       136.44         4.24         7.76        27.68 

$`ELF5 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 
       43.40        65.49        23.77        48.76        12.10        58.03 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
       71.24        60.23        24.53         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
       49.74         2.70         6.38        48.89        36.03       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
       20.38       194.83       176.55        35.93       107.34        61.18 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       53.92        65.92        23.44        68.09        28.60        10.49 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 
      215.44        15.68        29.82         8.65        33.73        14.70 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A 
       26.86         4.93       109.64        78.87       168.26        63.32 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M 
       47.84        13.97        39.62        32.19         2.56        44.35 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T 
       18.58        56.42        37.35        14.47        55.89       345.96 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
       25.87        17.92        46.82        78.94        24.43        39.25 
TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH 
       58.75        47.54        43.23       314.53       135.91       182.01 
TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN 
       22.55        89.33        54.71        55.00        75.48        90.94 
TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU 
      101.95        13.87        14.30        55.59        19.56        67.13 
TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD 
       21.67       129.24        28.80        19.76        61.51        47.28 
TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK 
      103.27       103.17        16.96       204.62        96.23       144.76 
TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR 
      203.01       167.87        47.54       248.61        43.23       103.56 
TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE 
       41.59        53.26       122.73        25.84         3.68        26.73 
TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       13.81        23.47       138.77        12.59        26.37         6.41 
TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX 
      131.08        44.05        79.99        80.32       216.92        48.59 
TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1ZB TCGA-FS-A1ZC 
      228.59       202.62        20.91        28.08        48.85       357.37 
TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ 
       53.52        40.27        15.45         9.70        32.71        47.38 
TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS 
       23.93       101.26        74.73       133.55        11.41       148.77 
TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 
       53.16        26.56        49.48        27.06        27.02         0.20 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 
       76.41       120.46       117.93        84.72        10.09        64.41 
TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       62.76        32.48        39.58 

  ELF5 MUTATED ELF5 WILD-TYPE 
          4.24           0.20 
  ELF5 MUTATED ELF5 WILD-TYPE 
        136.44         357.37 
  ELF5 MUTATED ELF5 WILD-TYPE 
         11.87          47.84 
[1] "4.2 - 136.4 (11.9)" "0.2 - 357.4 (47.8)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"ELF5 WILD-TYPE"   "ELF5 MUTATED" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE"   "ELF5 MUTATED" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE"   "ELF5 MUTATED" "ELF5 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE"   "ELF5 MUTATED" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
  "ELF5 MUTATED" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"ELF5 WILD-TYPE"   "ELF5 MUTATED" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE"   "ELF5 MUTATED" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE"   "ELF5 MUTATED" "ELF5 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE"   "ELF5 MUTATED" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
  "ELF5 MUTATED" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"ELF5 WILD-TYPE"   "ELF5 MUTATED" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE"   "ELF5 MUTATED" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE"   "ELF5 MUTATED" "ELF5 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE"   "ELF5 MUTATED" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
  "ELF5 MUTATED" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"ELF5 WILD-TYPE" "ELF5 WILD-TYPE" 
[1] "hr=" "2.3"
D34V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  ELF5 MUTATED                    1             0
  ELF5 WILD-TYPE                 21             1
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  ELF5 MUTATED                                                                                          0
  ELF5 WILD-TYPE                                                                                       32
                vv
clus             REGIONAL LYMPH NODE
  ELF5 MUTATED                     4
  ELF5 WILD-TYPE                 100
D34V3, multiclass
                                                                                          clus
vv                                                                                         ELF5 MUTATED
  DISTANT METASTASIS                                                                                  1
  PRIMARY TUMOR                                                                                       0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            0
  REGIONAL LYMPH NODE                                                                                 4
                                                                                          clus
vv                                                                                         ELF5 WILD-TYPE
  DISTANT METASTASIS                                                                                   21
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             32
  REGIONAL LYMPH NODE                                                                                 100
D34V4, binary
                cls
clus              0  1
  ELF5 MUTATED    1  4
  ELF5 WILD-TYPE 59 95
[1] "tbl2"
                cls
clus             [,1] [,2]
  ELF5 MUTATED      1    4
  ELF5 WILD-TYPE   59   95
        clus
vv       ELF5 MUTATED ELF5 WILD-TYPE
  FEMALE            1             59
  MALE              4             95
                vv
clus              M0  M1 M1A M1B M1C
  ELF5 MUTATED     4   0   0   0   0
  ELF5 WILD-TYPE 134   2   1   2   2
D34V5, multiclass
                vv
clus             N0 N1 N1A N1B N2A N2B N2C N3 NX
  ELF5 MUTATED    1  0   0   2   0   0   1  0  0
  ELF5 WILD-TYPE 86  2   7  13   4  10   4 14  2
D34V6, multiclass
D34V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  ELF5 MUTATED             0       0        0        0        1         0
  ELF5 WILD-TYPE           3      17       10       12       17         7
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  ELF5 MUTATED           0         0         0          0          1          2
  ELF5 WILD-TYPE         9         7         7          6         16         19
                vv
clus             STAGE IV
  ELF5 MUTATED          0
  ELF5 WILD-TYPE        5
D34V8, multiclass

Clustering(35) Variable = IL32 MUTATION ANALYSIS
D35V1, survival
                sevent
clus2             0  1
  IL32 MUTATED    6  1
  IL32 WILD-TYPE 67 84
  IL32 MUTATED IL32 WILD-TYPE 
             7            151 
  IL32 MUTATED IL32 WILD-TYPE 
             1             84 
$`IL32 MUTATED`
TCGA-D3-A2JF TCGA-EE-A2GO TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MS TCGA-FS-A1ZS 
       48.76       101.95       144.76       203.01       136.44       148.77 
TCGA-FS-A1ZZ 
       27.02 

$`IL32 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       43.40        65.49        23.77        11.87        12.10        58.03 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
       71.24        60.23        24.53         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
       49.74         2.70         6.38        48.89        36.03       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
       20.38       194.83       176.55        35.93       107.34        61.18 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       53.92        65.92        23.44        68.09        28.60        10.49 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 
      215.44        15.68        29.82         8.65        33.73        14.70 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A 
       26.86         4.93       109.64        78.87       168.26        63.32 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M 
       47.84        13.97        39.62        32.19         2.56        44.35 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T 
       18.58        56.42        37.35        14.47        55.89       345.96 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
       25.87        17.92        46.82        78.94        24.43        39.25 
TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH 
       58.75        47.54        43.23       314.53       135.91       182.01 
TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN 
       22.55        89.33        54.71        55.00        75.48        90.94 
TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 
       13.87        14.30        55.59        19.56        67.13        21.67 
TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME 
      129.24        28.80        19.76        61.51        47.28       103.27 
TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MM TCGA-EE-A2MN 
      103.17        16.96       204.62        96.23       167.87        47.54 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA 
      248.61        43.23       103.56        41.59        53.26         4.24 
TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG 
      122.73        25.84         3.68        26.73        13.81        23.47 
TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N 
      138.77        12.59        26.37         6.41       131.08        44.05 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 
       79.99        80.32       216.92        48.59       228.59       202.62 
TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC 
       20.91        28.08         7.76        27.68        48.85       357.37 
TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ 
       53.52        40.27        15.45         9.70        32.71        47.38 
TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZT 
       23.93       101.26        74.73       133.55        11.41        53.16 
TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 
       26.56        49.48        27.06         0.20        76.41       120.46 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
      117.93        84.72        10.09        64.41        62.76        32.48 
TCGA-GN-A26D 
       39.58 

  IL32 MUTATED IL32 WILD-TYPE 
         27.02           0.20 
  IL32 MUTATED IL32 WILD-TYPE 
        203.01         357.37 
  IL32 MUTATED IL32 WILD-TYPE 
        136.44          47.28 
[1] "27.0 - 203.0 (136.4)" "0.2 - 357.4 (47.3)"  
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"IL32 WILD-TYPE" "IL32 WILD-TYPE"   "IL32 MUTATED" "IL32 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE"   "IL32 MUTATED" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
  "IL32 MUTATED"   "IL32 MUTATED" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE"   "IL32 MUTATED" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"IL32 WILD-TYPE" "IL32 WILD-TYPE"   "IL32 MUTATED" "IL32 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE"   "IL32 MUTATED" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"IL32 WILD-TYPE" "IL32 WILD-TYPE"   "IL32 MUTATED" "IL32 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE"   "IL32 MUTATED" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
  "IL32 MUTATED"   "IL32 MUTATED" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE"   "IL32 MUTATED" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"IL32 WILD-TYPE" "IL32 WILD-TYPE"   "IL32 MUTATED" "IL32 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE"   "IL32 MUTATED" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"IL32 WILD-TYPE" "IL32 WILD-TYPE"   "IL32 MUTATED" "IL32 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE"   "IL32 MUTATED" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
  "IL32 MUTATED"   "IL32 MUTATED" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE"   "IL32 MUTATED" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"IL32 WILD-TYPE" "IL32 WILD-TYPE"   "IL32 MUTATED" "IL32 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE"   "IL32 MUTATED" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" 
[1] "hr=" "6.3"
D35V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  IL32 MUTATED                    2             0
  IL32 WILD-TYPE                 20             1
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  IL32 MUTATED                                                                                          1
  IL32 WILD-TYPE                                                                                       31
                vv
clus             REGIONAL LYMPH NODE
  IL32 MUTATED                     4
  IL32 WILD-TYPE                 100
D35V3, multiclass
                                                                                          clus
vv                                                                                         IL32 MUTATED
  DISTANT METASTASIS                                                                                  2
  PRIMARY TUMOR                                                                                       0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            1
  REGIONAL LYMPH NODE                                                                                 4
                                                                                          clus
vv                                                                                         IL32 WILD-TYPE
  DISTANT METASTASIS                                                                                   20
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             31
  REGIONAL LYMPH NODE                                                                                 100
D35V4, binary
                cls
clus              0  1
  IL32 MUTATED    3  4
  IL32 WILD-TYPE 57 95
[1] "tbl2"
                cls
clus             [,1] [,2]
  IL32 MUTATED      3    4
  IL32 WILD-TYPE   57   95
        clus
vv       IL32 MUTATED IL32 WILD-TYPE
  FEMALE            3             57
  MALE              4             95
                vv
clus              M0  M1 M1A M1B M1C
  IL32 MUTATED     7   0   0   0   0
  IL32 WILD-TYPE 131   2   1   2   2
D35V5, multiclass
                vv
clus             N0 N1 N1A N1B N2A N2B N2C N3 NX
  IL32 MUTATED    7  0   0   0   0   0   0  0  0
  IL32 WILD-TYPE 80  2   7  15   4  10   5 14  2
D35V6, multiclass
D35V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  IL32 MUTATED             0       0        1        0        5         0
  IL32 WILD-TYPE           3      17        9       12       13         7
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  IL32 MUTATED           1         0         0          0          0          0
  IL32 WILD-TYPE         8         7         7          6         17         21
                vv
clus             STAGE IV
  IL32 MUTATED          0
  IL32 WILD-TYPE        5
D35V8, multiclass

Clustering(36) Variable = LUZP2 MUTATION ANALYSIS
D36V1, survival
                 sevent
clus2              0  1
  LUZP2 MUTATED    6  7
  LUZP2 WILD-TYPE 67 78
  LUZP2 MUTATED LUZP2 WILD-TYPE 
             13             145 
  LUZP2 MUTATED LUZP2 WILD-TYPE 
              7              78 
$`LUZP2 MUTATED`
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29M TCGA-EE-A2A2 TCGA-EE-A2GC TCGA-EE-A2GD 
       47.84        13.97        44.35        24.43        43.23       314.53 
TCGA-EE-A2GM TCGA-EE-A2MI TCGA-FS-A1ZA TCGA-FS-A1ZJ TCGA-FS-A1ZQ TCGA-FS-A1ZZ 
       75.48       204.62        27.68        47.38       133.55        27.02 
TCGA-GN-A266 
       10.09 

$`LUZP2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW 
      148.31        49.74         2.70         6.38        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       61.18        53.92        65.92        23.44        68.09        28.60 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
       10.49       215.44        15.68        29.82         8.65        33.73 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H 
       14.70        26.86         4.93       109.64        78.87       168.26 
TCGA-EE-A29A TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P 
       63.32        39.62        32.19         2.56        18.58        56.42 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X 
       37.35        14.47        55.89       345.96        25.87        17.92 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GE 
       46.82        78.94        39.25        58.75        47.54       135.91 
TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GN 
      182.01        22.55        89.33        54.71        55.00        90.94 
TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU 
      101.95        13.87        14.30        55.59        19.56        67.13 
TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD 
       21.67       129.24        28.80        19.76        61.51        47.28 
TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML 
      103.27       103.17        16.96        96.23       144.76       203.01 
TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS 
      167.87        47.54       248.61        43.23       103.56       136.44 
TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD 
       41.59        53.26         4.24       122.73        25.84         3.68 
TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F 
       26.73        13.81        23.47       138.77        12.59        26.37 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW 
        6.41       131.08        44.05        79.99        80.32       216.92 
TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 
       48.59       228.59       202.62        20.91        28.08         7.76 
TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG 
       48.85       357.37        53.52        40.27        15.45         9.70 
TCGA-FS-A1ZH TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS 
       32.71        23.93       101.26        74.73        11.41       148.77 
TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FW-A3I3 TCGA-GN-A261 
       53.16        26.56        49.48        27.06         0.20        76.41 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
      120.46       117.93        84.72        64.41        62.76        32.48 
TCGA-GN-A26D 
       39.58 

  LUZP2 MUTATED LUZP2 WILD-TYPE 
          10.09            0.20 
  LUZP2 MUTATED LUZP2 WILD-TYPE 
         314.53          357.37 
  LUZP2 MUTATED LUZP2 WILD-TYPE 
          44.35           48.59 
[1] "10.1 - 314.5 (44.4)" "0.2 - 357.4 (48.6)" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"LUZP2 WILD-TYPE"   "LUZP2 MUTATED"   "LUZP2 MUTATED" "LUZP2 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE"   "LUZP2 MUTATED" "LUZP2 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"LUZP2 WILD-TYPE"   "LUZP2 MUTATED" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"LUZP2 WILD-TYPE"   "LUZP2 MUTATED"   "LUZP2 MUTATED" "LUZP2 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"LUZP2 WILD-TYPE"   "LUZP2 MUTATED" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE"   "LUZP2 MUTATED" "LUZP2 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
  "LUZP2 MUTATED" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
  "LUZP2 MUTATED" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
  "LUZP2 MUTATED" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE"   "LUZP2 MUTATED" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"LUZP2 WILD-TYPE"   "LUZP2 MUTATED" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"LUZP2 WILD-TYPE"   "LUZP2 MUTATED"   "LUZP2 MUTATED" "LUZP2 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE"   "LUZP2 MUTATED" "LUZP2 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"LUZP2 WILD-TYPE"   "LUZP2 MUTATED" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"LUZP2 WILD-TYPE"   "LUZP2 MUTATED"   "LUZP2 MUTATED" "LUZP2 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"LUZP2 WILD-TYPE"   "LUZP2 MUTATED" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE"   "LUZP2 MUTATED" "LUZP2 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
  "LUZP2 MUTATED" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
  "LUZP2 MUTATED" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
  "LUZP2 MUTATED" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE"   "LUZP2 MUTATED" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"LUZP2 WILD-TYPE"   "LUZP2 MUTATED" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"LUZP2 WILD-TYPE"   "LUZP2 MUTATED"   "LUZP2 MUTATED" "LUZP2 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE"   "LUZP2 MUTATED" "LUZP2 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"LUZP2 WILD-TYPE"   "LUZP2 MUTATED" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"LUZP2 WILD-TYPE"   "LUZP2 MUTATED"   "LUZP2 MUTATED" "LUZP2 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"LUZP2 WILD-TYPE"   "LUZP2 MUTATED" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE"   "LUZP2 MUTATED" "LUZP2 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
  "LUZP2 MUTATED" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
  "LUZP2 MUTATED" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
  "LUZP2 MUTATED" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE"   "LUZP2 MUTATED" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"LUZP2 WILD-TYPE"   "LUZP2 MUTATED" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
[1] "hr=" "1.1"
D36V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  LUZP2 MUTATED                    3             1
  LUZP2 WILD-TYPE                 19             0
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  LUZP2 MUTATED                                                                                          3
  LUZP2 WILD-TYPE                                                                                       29
                 vv
clus              REGIONAL LYMPH NODE
  LUZP2 MUTATED                     6
  LUZP2 WILD-TYPE                  98
D36V3, multiclass
                                                                                          clus
vv                                                                                         LUZP2 MUTATED
  DISTANT METASTASIS                                                                                   3
  PRIMARY TUMOR                                                                                        1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             3
  REGIONAL LYMPH NODE                                                                                  6
                                                                                          clus
vv                                                                                         LUZP2 WILD-TYPE
  DISTANT METASTASIS                                                                                    19
  PRIMARY TUMOR                                                                                          0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              29
  REGIONAL LYMPH NODE                                                                                   98
D36V4, binary
                 cls
clus               0  1
  LUZP2 MUTATED    6  7
  LUZP2 WILD-TYPE 54 92
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LUZP2 MUTATED      6    7
  LUZP2 WILD-TYPE   54   92
        clus
vv       LUZP2 MUTATED LUZP2 WILD-TYPE
  FEMALE             6              54
  MALE               7              92
                 vv
clus               M0  M1 M1A M1B M1C
  LUZP2 MUTATED    12   0   0   0   0
  LUZP2 WILD-TYPE 126   2   1   2   2
D36V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2A N2B N2C N3 NX
  LUZP2 MUTATED    9  0   0   2   0   0   1  0  0
  LUZP2 WILD-TYPE 78  2   7  13   4  10   4 14  2
D36V6, multiclass
D36V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  LUZP2 MUTATED             1       1        0        2        0         0
  LUZP2 WILD-TYPE           2      16       10       10       18         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  LUZP2 MUTATED           4         1         0          0          2
  LUZP2 WILD-TYPE         5         6         7          6         15
                 vv
clus              STAGE IIIC STAGE IV
  LUZP2 MUTATED            1        0
  LUZP2 WILD-TYPE         20        5
D36V8, multiclass

Clustering(37) Variable = PDE1A MUTATION ANALYSIS
D37V1, survival
                 sevent
clus2              0  1
  PDE1A MUTATED   11 13
  PDE1A WILD-TYPE 62 72
  PDE1A MUTATED PDE1A WILD-TYPE 
             24             134 
  PDE1A MUTATED PDE1A WILD-TYPE 
             13              72 
$`PDE1A MUTATED`
TCGA-D3-A2JF TCGA-DA-A1IC TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A20H TCGA-EE-A29D 
       48.76        68.09        33.73        14.70       168.26        13.97 
TCGA-EE-A29E TCGA-EE-A29M TCGA-EE-A29S TCGA-EE-A2A0 TCGA-EE-A2A2 TCGA-EE-A2GC 
       39.62        44.35        55.89        46.82        24.43        43.23 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GS TCGA-EE-A2M5 TCGA-EE-A2M8 TCGA-EE-A2MD 
      135.91       182.01        55.59        21.67        19.76        47.28 
TCGA-EE-A2MR TCGA-EE-A2MT TCGA-EE-A3AF TCGA-ER-A19F TCGA-FS-A1Z3 TCGA-FS-A1ZQ 
      103.56        41.59        13.81        26.37        20.91       133.55 

$`PDE1A WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       43.40        65.49        23.77        11.87        12.10        58.03 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
       71.24        60.23        24.53         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
       49.74         2.70         6.38        48.89        36.03       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
       20.38       194.83       176.55        35.93       107.34        61.18 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       53.92        65.92        23.44        28.60        10.49       215.44 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
       15.68        29.82         8.65        26.86         4.93       109.64 
TCGA-EE-A20F TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N 
       78.87        63.32        47.84        32.19         2.56        18.58 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X 
       56.42        37.35        14.47       345.96        25.87        17.92 
TCGA-EE-A2A1 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GD TCGA-EE-A2GI 
       78.94        39.25        58.75        47.54       314.53        22.55 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO 
       89.33        54.71        55.00        75.48        90.94       101.95 
TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2M7 
       13.87        14.30        19.56        67.13       129.24        28.80 
TCGA-EE-A2MC TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ 
       61.51       103.27       103.17        16.96       204.62        96.23 
TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ 
      144.76       203.01       167.87        47.54       248.61        43.23 
TCGA-EE-A2MS TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD 
      136.44        53.26         4.24       122.73        25.84         3.68 
TCGA-EE-A3AE TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19J TCGA-ER-A19L 
       26.73        23.47       138.77        12.59         6.41       131.08 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY 
       44.05        79.99        80.32       216.92        48.59       228.59 
TCGA-FS-A1Z0 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC 
      202.62        28.08         7.76        27.68        48.85       357.37 
TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ 
       53.52        40.27        15.45         9.70        32.71        47.38 
TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT 
       23.93       101.26        74.73        11.41       148.77        53.16 
TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 
       26.56        49.48        27.06        27.02         0.20        76.41 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 
      120.46       117.93        84.72        10.09        64.41        62.76 
TCGA-GN-A26A TCGA-GN-A26D 
       32.48        39.58 

  PDE1A MUTATED PDE1A WILD-TYPE 
          13.81            0.20 
  PDE1A MUTATED PDE1A WILD-TYPE 
         182.01          357.37 
  PDE1A MUTATED PDE1A WILD-TYPE 
          43.79           48.72 
[1] "13.8 - 182.0 (43.8)" "0.2 - 357.4 (48.7)" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"PDE1A WILD-TYPE"   "PDE1A MUTATED"   "PDE1A MUTATED" "PDE1A WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED"   "PDE1A MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE"   "PDE1A MUTATED" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
  "PDE1A MUTATED" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
  "PDE1A MUTATED" "PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
  "PDE1A MUTATED" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
  "PDE1A MUTATED" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"PDE1A WILD-TYPE"   "PDE1A MUTATED"   "PDE1A MUTATED" "PDE1A WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED"   "PDE1A MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE"   "PDE1A MUTATED" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
  "PDE1A MUTATED" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
  "PDE1A MUTATED" "PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
  "PDE1A MUTATED" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
  "PDE1A MUTATED" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"PDE1A WILD-TYPE"   "PDE1A MUTATED"   "PDE1A MUTATED" "PDE1A WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED"   "PDE1A MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE"   "PDE1A MUTATED" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
  "PDE1A MUTATED" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
  "PDE1A MUTATED" "PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
  "PDE1A MUTATED" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE"   "PDE1A MUTATED" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"PDE1A WILD-TYPE"   "PDE1A MUTATED" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
  "PDE1A MUTATED" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"PDE1A WILD-TYPE" "PDE1A WILD-TYPE" 
[1] "hr=" "1.2"
D37V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  PDE1A MUTATED                    5             1
  PDE1A WILD-TYPE                 17             0
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  PDE1A MUTATED                                                                                          1
  PDE1A WILD-TYPE                                                                                       31
                 vv
clus              REGIONAL LYMPH NODE
  PDE1A MUTATED                    17
  PDE1A WILD-TYPE                  87
D37V3, multiclass
                                                                                          clus
vv                                                                                         PDE1A MUTATED
  DISTANT METASTASIS                                                                                   5
  PRIMARY TUMOR                                                                                        1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             1
  REGIONAL LYMPH NODE                                                                                 17
                                                                                          clus
vv                                                                                         PDE1A WILD-TYPE
  DISTANT METASTASIS                                                                                    17
  PRIMARY TUMOR                                                                                          0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              31
  REGIONAL LYMPH NODE                                                                                   87
D37V4, binary
                 cls
clus               0  1
  PDE1A MUTATED    8 16
  PDE1A WILD-TYPE 52 83
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PDE1A MUTATED      8   16
  PDE1A WILD-TYPE   52   83
        clus
vv       PDE1A MUTATED PDE1A WILD-TYPE
  FEMALE             8              52
  MALE              16              83
                 vv
clus               M0  M1 M1A M1B M1C
  PDE1A MUTATED    22   0   0   0   0
  PDE1A WILD-TYPE 116   2   1   2   2
D37V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2A N2B N2C N3 NX
  PDE1A MUTATED   16  1   0   4   0   0   1  0  0
  PDE1A WILD-TYPE 71  1   7  11   4  10   4 14  2
D37V6, multiclass
D37V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  PDE1A MUTATED             1       5        1        3        2         2
  PDE1A WILD-TYPE           2      12        9        9       16         5
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  PDE1A MUTATED           1         0         1          0          3
  PDE1A WILD-TYPE         8         7         6          6         14
                 vv
clus              STAGE IIIC STAGE IV
  PDE1A MUTATED            2        0
  PDE1A WILD-TYPE         19        5
D37V8, multiclass

Clustering(38) Variable = RBM11 MUTATION ANALYSIS
D38V1, survival
                 sevent
clus2              0  1
  RBM11 MUTATED    6  4
  RBM11 WILD-TYPE 67 81
  RBM11 MUTATED RBM11 WILD-TYPE 
             10             148 
  RBM11 MUTATED RBM11 WILD-TYPE 
              4              81 
$`RBM11 MUTATED`
TCGA-DA-A1I5 TCGA-EE-A181 TCGA-EE-A29H TCGA-EE-A29S TCGA-EE-A2M5 TCGA-EE-A2MC 
      107.34        33.73        32.19        55.89        21.67        61.51 
TCGA-EE-A2MD TCGA-EE-A2MR TCGA-FS-A1ZM TCGA-FS-A1ZW 
       47.28       103.56       101.26        49.48 

$`RBM11 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW 
      148.31        49.74         2.70         6.38        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 
      117.17        20.38       194.83       176.55        35.93        61.18 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       53.92        65.92        23.44        68.09        28.60        10.49 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 
      215.44        15.68        29.82         8.65        14.70        26.86 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.93       109.64        78.87       168.26        63.32        47.84 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
       13.97        39.62         2.56        44.35        18.58        56.42 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
       37.35        14.47       345.96        25.87        17.92        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC 
       78.94        24.43        39.25        58.75        47.54        43.23 
TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK 
      314.53       135.91       182.01        22.55        89.33        54.71 
TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR 
       55.00        75.48        90.94       101.95        13.87        14.30 
TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 
       55.59        19.56        67.13       129.24        28.80        19.76 
TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK 
      103.27       103.17        16.96       204.62        96.23       144.76 
TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MS 
      203.01       167.87        47.54       248.61        43.23       136.44 
TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD 
       41.59        53.26         4.24       122.73        25.84         3.68 
TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F 
       26.73        13.81        23.47       138.77        12.59        26.37 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW 
        6.41       131.08        44.05        79.99        80.32       216.92 
TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 
       48.59       228.59       202.62        20.91        28.08         7.76 
TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF 
       27.68        48.85       357.37        53.52        40.27        15.45 
TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZP TCGA-FS-A1ZQ 
        9.70        32.71        47.38        23.93        74.73       133.55 
TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZY TCGA-FS-A1ZZ 
       11.41       148.77        53.16        26.56        27.06        27.02 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        0.20        76.41       120.46       117.93        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       64.41        62.76        32.48        39.58 

  RBM11 MUTATED RBM11 WILD-TYPE 
          21.67            0.20 
  RBM11 MUTATED RBM11 WILD-TYPE 
         107.34          357.37 
  RBM11 MUTATED RBM11 WILD-TYPE 
         52.685          47.460 
[1] "21.7 - 107.3 (52.7)" "0.2 - 357.4 (47.5)" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"RBM11 WILD-TYPE"   "RBM11 MUTATED" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"RBM11 WILD-TYPE"   "RBM11 MUTATED" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
  "RBM11 MUTATED" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE"   "RBM11 MUTATED" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"RBM11 WILD-TYPE"   "RBM11 MUTATED" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"RBM11 WILD-TYPE"   "RBM11 MUTATED"   "RBM11 MUTATED" "RBM11 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE"   "RBM11 MUTATED" "RBM11 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE"   "RBM11 MUTATED" "RBM11 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"RBM11 WILD-TYPE"   "RBM11 MUTATED" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"RBM11 WILD-TYPE"   "RBM11 MUTATED" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"RBM11 WILD-TYPE"   "RBM11 MUTATED" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
  "RBM11 MUTATED" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE"   "RBM11 MUTATED" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"RBM11 WILD-TYPE"   "RBM11 MUTATED" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"RBM11 WILD-TYPE"   "RBM11 MUTATED"   "RBM11 MUTATED" "RBM11 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE"   "RBM11 MUTATED" "RBM11 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE"   "RBM11 MUTATED" "RBM11 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"RBM11 WILD-TYPE"   "RBM11 MUTATED" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"RBM11 WILD-TYPE"   "RBM11 MUTATED" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"RBM11 WILD-TYPE"   "RBM11 MUTATED" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
  "RBM11 MUTATED" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE"   "RBM11 MUTATED" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"RBM11 WILD-TYPE"   "RBM11 MUTATED" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"RBM11 WILD-TYPE"   "RBM11 MUTATED"   "RBM11 MUTATED" "RBM11 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE"   "RBM11 MUTATED" "RBM11 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE"   "RBM11 MUTATED" "RBM11 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"RBM11 WILD-TYPE"   "RBM11 MUTATED" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"RBM11 WILD-TYPE" "RBM11 WILD-TYPE" 
[1] "hr=" "1.3"
D38V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  RBM11 MUTATED                    1             0
  RBM11 WILD-TYPE                 21             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  RBM11 MUTATED                                                                                          1
  RBM11 WILD-TYPE                                                                                       31
                 vv
clus              REGIONAL LYMPH NODE
  RBM11 MUTATED                     8
  RBM11 WILD-TYPE                  96
D38V3, multiclass
                                                                                          clus
vv                                                                                         RBM11 MUTATED
  DISTANT METASTASIS                                                                                   1
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             1
  REGIONAL LYMPH NODE                                                                                  8
                                                                                          clus
vv                                                                                         RBM11 WILD-TYPE
  DISTANT METASTASIS                                                                                    21
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              31
  REGIONAL LYMPH NODE                                                                                   96
D38V4, binary
                 cls
clus               0  1
  RBM11 MUTATED    3  7
  RBM11 WILD-TYPE 57 92
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RBM11 MUTATED      3    7
  RBM11 WILD-TYPE   57   92
        clus
vv       RBM11 MUTATED RBM11 WILD-TYPE
  FEMALE             3              57
  MALE               7              92
                 vv
clus               M0  M1 M1A M1B M1C
  RBM11 MUTATED     9   0   0   0   1
  RBM11 WILD-TYPE 129   2   1   2   1
D38V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2A N2B N2C N3 NX
  RBM11 MUTATED    8  0   1   0   0   0   1  0  0
  RBM11 WILD-TYPE 79  2   6  15   4  10   4 14  2
D38V6, multiclass
D38V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  RBM11 MUTATED             0       3        1        0        2         1
  RBM11 WILD-TYPE           3      14        9       12       16         6
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  RBM11 MUTATED           0         0         1          0          1
  RBM11 WILD-TYPE         9         7         6          6         16
                 vv
clus              STAGE IIIC STAGE IV
  RBM11 MUTATED            0        1
  RBM11 WILD-TYPE         21        4
D38V8, multiclass

Clustering(39) Variable = GLRB MUTATION ANALYSIS
D39V1, survival
                sevent
clus2             0  1
  GLRB MUTATED    6 12
  GLRB WILD-TYPE 67 73
  GLRB MUTATED GLRB WILD-TYPE 
            18            140 
  GLRB MUTATED GLRB WILD-TYPE 
            12             73 
$`GLRB MUTATED`
TCGA-D3-A2J8 TCGA-D3-A2JF TCGA-EE-A182 TCGA-EE-A20H TCGA-EE-A29D TCGA-EE-A29E 
       65.49        48.76        14.70       168.26        13.97        39.62 
TCGA-EE-A29L TCGA-EE-A2GD TCGA-EE-A2GP TCGA-EE-A2MD TCGA-EE-A2MS TCGA-EE-A3AE 
        2.56       314.53        13.87        47.28       136.44        26.73 
TCGA-ER-A19D TCGA-FS-A1YW TCGA-FS-A1ZE TCGA-FS-A1ZQ TCGA-FS-A1ZU TCGA-FS-A1ZZ 
       12.59       216.92        40.27       133.55        26.56        27.02 

$`GLRB WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC 
       43.40        23.77        11.87        12.10        58.03        71.24 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 TCGA-D9-A149 
       60.23        24.53         9.30        21.47       148.31        49.74 
TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        2.70         6.38        48.89        36.03       117.17        20.38 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
      194.83       176.55        35.93       107.34        61.18        53.92 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       65.92        23.44        68.09        28.60        10.49       215.44 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 
       15.68        29.82         8.65        33.73        26.86         4.93 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29H TCGA-EE-A29M 
      109.64        78.87        63.32        47.84        32.19        44.35 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T 
       18.58        56.42        37.35        14.47        55.89       345.96 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
       25.87        17.92        46.82        78.94        24.43        39.25 
TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI 
       58.75        47.54        43.23       135.91       182.01        22.55 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO 
       89.33        54.71        55.00        75.48        90.94       101.95 
TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 
       14.30        55.59        19.56        67.13        21.67       129.24 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH 
       28.80        19.76        61.51       103.27       103.17        16.96 
TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN 
      204.62        96.23       144.76       203.01       167.87        47.54 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA 
      248.61        43.23       103.56        41.59        53.26         4.24 
TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH 
      122.73        25.84         3.68        13.81        23.47       138.77 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
       26.37         6.41       131.08        44.05        79.99        80.32 
TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 
       48.59       228.59       202.62        20.91        28.08         7.76 
TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZF TCGA-FS-A1ZG 
       27.68        48.85       357.37        53.52        15.45         9.70 
TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZR 
       32.71        47.38        23.93       101.26        74.73        11.41 
TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FW-A3I3 TCGA-GN-A261 
      148.77        53.16        49.48        27.06         0.20        76.41 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 
      120.46       117.93        84.72        10.09        64.41        62.76 
TCGA-GN-A26A TCGA-GN-A26D 
       32.48        39.58 

  GLRB MUTATED GLRB WILD-TYPE 
          2.56           0.20 
  GLRB MUTATED GLRB WILD-TYPE 
        314.53         357.37 
  GLRB MUTATED GLRB WILD-TYPE 
        39.945         48.215 
[1] "2.6 - 314.5 (39.9)" "0.2 - 357.4 (48.2)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE"   "GLRB MUTATED" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"GLRB WILD-TYPE" "GLRB WILD-TYPE"   "GLRB MUTATED" "GLRB WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"GLRB WILD-TYPE" "GLRB WILD-TYPE"   "GLRB MUTATED" "GLRB WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE"   "GLRB MUTATED" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"GLRB WILD-TYPE" "GLRB WILD-TYPE"   "GLRB MUTATED"   "GLRB MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"GLRB WILD-TYPE"   "GLRB MUTATED" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"GLRB WILD-TYPE" "GLRB WILD-TYPE"   "GLRB MUTATED" "GLRB WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
  "GLRB MUTATED" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"GLRB WILD-TYPE" "GLRB WILD-TYPE"   "GLRB MUTATED" "GLRB WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE"   "GLRB MUTATED" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"GLRB WILD-TYPE" "GLRB WILD-TYPE"   "GLRB MUTATED" "GLRB WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"GLRB WILD-TYPE" "GLRB WILD-TYPE"   "GLRB MUTATED" "GLRB WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"GLRB WILD-TYPE"   "GLRB MUTATED" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
  "GLRB MUTATED" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
  "GLRB MUTATED" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
  "GLRB MUTATED" "GLRB WILD-TYPE" "GLRB WILD-TYPE"   "GLRB MUTATED" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE"   "GLRB MUTATED" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"GLRB WILD-TYPE" "GLRB WILD-TYPE"   "GLRB MUTATED" "GLRB WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"GLRB WILD-TYPE" "GLRB WILD-TYPE"   "GLRB MUTATED" "GLRB WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE"   "GLRB MUTATED" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"GLRB WILD-TYPE" "GLRB WILD-TYPE"   "GLRB MUTATED"   "GLRB MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"GLRB WILD-TYPE"   "GLRB MUTATED" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"GLRB WILD-TYPE" "GLRB WILD-TYPE"   "GLRB MUTATED" "GLRB WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
  "GLRB MUTATED" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"GLRB WILD-TYPE" "GLRB WILD-TYPE"   "GLRB MUTATED" "GLRB WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE"   "GLRB MUTATED" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"GLRB WILD-TYPE" "GLRB WILD-TYPE"   "GLRB MUTATED" "GLRB WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"GLRB WILD-TYPE" "GLRB WILD-TYPE"   "GLRB MUTATED" "GLRB WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"GLRB WILD-TYPE"   "GLRB MUTATED" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
  "GLRB MUTATED" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
  "GLRB MUTATED" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
  "GLRB MUTATED" "GLRB WILD-TYPE" "GLRB WILD-TYPE"   "GLRB MUTATED" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE"   "GLRB MUTATED" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"GLRB WILD-TYPE" "GLRB WILD-TYPE"   "GLRB MUTATED" "GLRB WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"GLRB WILD-TYPE" "GLRB WILD-TYPE"   "GLRB MUTATED" "GLRB WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE"   "GLRB MUTATED" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"GLRB WILD-TYPE" "GLRB WILD-TYPE"   "GLRB MUTATED"   "GLRB MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"GLRB WILD-TYPE"   "GLRB MUTATED" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"GLRB WILD-TYPE" "GLRB WILD-TYPE"   "GLRB MUTATED" "GLRB WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
  "GLRB MUTATED" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"GLRB WILD-TYPE" "GLRB WILD-TYPE"   "GLRB MUTATED" "GLRB WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE"   "GLRB MUTATED" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"GLRB WILD-TYPE" "GLRB WILD-TYPE"   "GLRB MUTATED" "GLRB WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"GLRB WILD-TYPE" "GLRB WILD-TYPE"   "GLRB MUTATED" "GLRB WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"GLRB WILD-TYPE"   "GLRB MUTATED" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
  "GLRB MUTATED" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
  "GLRB MUTATED" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
  "GLRB MUTATED" "GLRB WILD-TYPE" "GLRB WILD-TYPE"   "GLRB MUTATED" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" "GLRB WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"GLRB WILD-TYPE" "GLRB WILD-TYPE" 
[1] "hr=" "1.2"
D39V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  GLRB MUTATED                    7             0
  GLRB WILD-TYPE                 15             1
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  GLRB MUTATED                                                                                          3
  GLRB WILD-TYPE                                                                                       29
                vv
clus             REGIONAL LYMPH NODE
  GLRB MUTATED                     8
  GLRB WILD-TYPE                  96
D39V3, multiclass
                                                                                          clus
vv                                                                                         GLRB MUTATED
  DISTANT METASTASIS                                                                                  7
  PRIMARY TUMOR                                                                                       0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            3
  REGIONAL LYMPH NODE                                                                                 8
                                                                                          clus
vv                                                                                         GLRB WILD-TYPE
  DISTANT METASTASIS                                                                                   15
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             29
  REGIONAL LYMPH NODE                                                                                  96
D39V4, binary
                cls
clus              0  1
  GLRB MUTATED    6 12
  GLRB WILD-TYPE 54 87
[1] "tbl2"
                cls
clus             [,1] [,2]
  GLRB MUTATED      6   12
  GLRB WILD-TYPE   54   87
        clus
vv       GLRB MUTATED GLRB WILD-TYPE
  FEMALE            6             54
  MALE             12             87
                vv
clus              M0  M1 M1A M1B M1C
  GLRB MUTATED    18   0   0   0   0
  GLRB WILD-TYPE 120   2   1   2   2
D39V5, multiclass
                vv
clus             N0 N1 N1A N1B N2A N2B N2C N3 NX
  GLRB MUTATED   13  0   1   3   0   0   0  1  0
  GLRB WILD-TYPE 74  2   6  12   4  10   5 13  2
D39V6, multiclass
D39V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  GLRB MUTATED             1       1        2        3        2         0
  GLRB WILD-TYPE           2      16        8        9       16         7
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  GLRB MUTATED           2         2         0          0          2          3
  GLRB WILD-TYPE         7         5         7          6         15         18
                vv
clus             STAGE IV
  GLRB MUTATED          0
  GLRB WILD-TYPE        5
D39V8, multiclass

Clustering(40) Variable = PRB1 MUTATION ANALYSIS
D40V1, survival
                sevent
clus2             0  1
  PRB1 MUTATED    6  9
  PRB1 WILD-TYPE 67 76
  PRB1 MUTATED PRB1 WILD-TYPE 
            15            143 
  PRB1 MUTATED PRB1 WILD-TYPE 
             9             76 
$`PRB1 MUTATED`
TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A2JF TCGA-DA-A3F8 TCGA-EE-A29D TCGA-EE-A29V 
      112.54        71.80        48.76        15.68        13.97        25.87 
TCGA-EE-A2A0 TCGA-EE-A2GJ TCGA-EE-A2GO TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A3AA 
       46.82        89.33       101.95       204.62        96.23         4.24 
TCGA-ER-A1A1 TCGA-FS-A1Z7 TCGA-GN-A266 
       79.99         7.76        10.09 

$`PRB1 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A2J8 
       16.57       121.22        28.08        31.59        43.40        65.49 
TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE 
       23.77        11.87        12.10        58.03        71.24        60.23 
TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW 
       24.53         9.30        21.47       148.31        49.74         2.70 
TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        6.38        48.89        36.03       117.17        20.38       194.83 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
      176.55        35.93       107.34        61.18        53.92        65.92 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A17X 
       23.44        68.09        28.60        10.49       215.44        29.82 
TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
        8.65        33.73        14.70        26.86         4.93       109.64 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H 
       78.87       168.26        63.32        47.84        39.62        32.19 
TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
        2.56        44.35        18.58        56.42        37.35        14.47 
TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
       55.89       345.96        17.92        78.94        24.43        39.25 
TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH 
       58.75        47.54        43.23       314.53       135.91       182.01 
TCGA-EE-A2GI TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GP 
       22.55        54.71        55.00        75.48        90.94        13.87 
TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 
       14.30        55.59        19.56        67.13        21.67       129.24 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG 
       28.80        19.76        61.51        47.28       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP 
       16.96       144.76       203.01       167.87        47.54       248.61 
TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AB 
       43.23       103.56       136.44        41.59        53.26       122.73 
TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH 
       25.84         3.68        26.73        13.81        23.47       138.77 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A3ET 
       12.59        26.37         6.41       131.08        44.05        80.32 
TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 
      216.92        48.59       228.59       202.62        20.91        28.08 
TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF 
       27.68        48.85       357.37        53.52        40.27        15.45 
TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP 
        9.70        32.71        47.38        23.93       101.26        74.73 
TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW 
      133.55        11.41       148.77        53.16        26.56        49.48 
TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
       27.06        27.02         0.20        76.41       120.46       117.93 
TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       84.72        64.41        62.76        32.48        39.58 

  PRB1 MUTATED PRB1 WILD-TYPE 
          4.24           0.20 
  PRB1 MUTATED PRB1 WILD-TYPE 
        204.62         357.37 
  PRB1 MUTATED PRB1 WILD-TYPE 
         48.76          47.54 
[1] "4.2 - 204.6 (48.8)" "0.2 - 357.4 (47.5)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"PRB1 WILD-TYPE"   "PRB1 MUTATED"   "PRB1 MUTATED" "PRB1 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE"   "PRB1 MUTATED" "PRB1 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE"   "PRB1 MUTATED" "PRB1 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE"   "PRB1 MUTATED" "PRB1 WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"PRB1 WILD-TYPE"   "PRB1 MUTATED" "PRB1 WILD-TYPE"   "PRB1 MUTATED" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE"   "PRB1 MUTATED" "PRB1 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE"   "PRB1 MUTATED" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE"   "PRB1 MUTATED"   "PRB1 MUTATED" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE"   "PRB1 MUTATED" "PRB1 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE"   "PRB1 MUTATED" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE"   "PRB1 MUTATED" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"PRB1 WILD-TYPE"   "PRB1 MUTATED" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"PRB1 WILD-TYPE"   "PRB1 MUTATED"   "PRB1 MUTATED" "PRB1 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE"   "PRB1 MUTATED" "PRB1 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE"   "PRB1 MUTATED" "PRB1 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE"   "PRB1 MUTATED" "PRB1 WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"PRB1 WILD-TYPE"   "PRB1 MUTATED" "PRB1 WILD-TYPE"   "PRB1 MUTATED" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE"   "PRB1 MUTATED" "PRB1 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE"   "PRB1 MUTATED" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE"   "PRB1 MUTATED"   "PRB1 MUTATED" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE"   "PRB1 MUTATED" "PRB1 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE"   "PRB1 MUTATED" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE"   "PRB1 MUTATED" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"PRB1 WILD-TYPE"   "PRB1 MUTATED" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"PRB1 WILD-TYPE"   "PRB1 MUTATED"   "PRB1 MUTATED" "PRB1 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE"   "PRB1 MUTATED" "PRB1 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE"   "PRB1 MUTATED" "PRB1 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE"   "PRB1 MUTATED" "PRB1 WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"PRB1 WILD-TYPE"   "PRB1 MUTATED" "PRB1 WILD-TYPE"   "PRB1 MUTATED" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE"   "PRB1 MUTATED" "PRB1 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE"   "PRB1 MUTATED" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE"   "PRB1 MUTATED"   "PRB1 MUTATED" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE"   "PRB1 MUTATED" "PRB1 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE"   "PRB1 MUTATED" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE"   "PRB1 MUTATED" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"PRB1 WILD-TYPE"   "PRB1 MUTATED" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
[1] "hr=" "1.2"
D40V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  PRB1 MUTATED                    2             0
  PRB1 WILD-TYPE                 20             1
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  PRB1 MUTATED                                                                                          3
  PRB1 WILD-TYPE                                                                                       29
                vv
clus             REGIONAL LYMPH NODE
  PRB1 MUTATED                    10
  PRB1 WILD-TYPE                  94
D40V3, multiclass
                                                                                          clus
vv                                                                                         PRB1 MUTATED
  DISTANT METASTASIS                                                                                  2
  PRIMARY TUMOR                                                                                       0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            3
  REGIONAL LYMPH NODE                                                                                10
                                                                                          clus
vv                                                                                         PRB1 WILD-TYPE
  DISTANT METASTASIS                                                                                   20
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             29
  REGIONAL LYMPH NODE                                                                                  94
D40V4, binary
                cls
clus              0  1
  PRB1 MUTATED    2 13
  PRB1 WILD-TYPE 58 86
[1] "tbl2"
                cls
clus             [,1] [,2]
  PRB1 MUTATED      2   13
  PRB1 WILD-TYPE   58   86
        clus
vv       PRB1 MUTATED PRB1 WILD-TYPE
  FEMALE            2             58
  MALE             13             86
                vv
clus              M0  M1 M1A M1B M1C
  PRB1 MUTATED    13   0   0   0   0
  PRB1 WILD-TYPE 125   2   1   2   2
D40V5, multiclass
                vv
clus             N0 N1 N1A N1B N2A N2B N2C N3 NX
  PRB1 MUTATED    7  0   0   4   0   1   0  1  0
  PRB1 WILD-TYPE 80  2   7  11   4   9   5 13  2
D40V6, multiclass
D40V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  PRB1 MUTATED             1       0        2        0        2         1
  PRB1 WILD-TYPE           2      17        8       12       16         6
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  PRB1 MUTATED           1         0         1          0          1          4
  PRB1 WILD-TYPE         8         7         6          6         16         17
                vv
clus             STAGE IV
  PRB1 MUTATED          0
  PRB1 WILD-TYPE        5
D40V8, multiclass

Clustering(41) Variable = KIAA1257 MUTATION ANALYSIS
D41V1, survival
                    sevent
clus2                 0  1
  KIAA1257 MUTATED    2  5
  KIAA1257 WILD-TYPE 71 80
  KIAA1257 MUTATED KIAA1257 WILD-TYPE 
                 7                151 
  KIAA1257 MUTATED KIAA1257 WILD-TYPE 
                 5                 80 
$`KIAA1257 MUTATED`
TCGA-EE-A29L TCGA-EE-A2GP TCGA-EE-A2M6 TCGA-EE-A2MJ TCGA-EE-A3AA TCGA-FS-A1Z3 
        2.56        13.87       129.24        96.23         4.24        20.91 
TCGA-FS-A1ZQ 
      133.55 

$`KIAA1257 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW 
      148.31        49.74         2.70         6.38        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       61.18        53.92        65.92        23.44        68.09        28.60 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
       10.49       215.44        15.68        29.82         8.65        33.73 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H 
       14.70        26.86         4.93       109.64        78.87       168.26 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29M 
       63.32        47.84        13.97        39.62        32.19        44.35 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T 
       18.58        56.42        37.35        14.47        55.89       345.96 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
       25.87        17.92        46.82        78.94        24.43        39.25 
TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH 
       58.75        47.54        43.23       314.53       135.91       182.01 
TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN 
       22.55        89.33        54.71        55.00        75.48        90.94 
TCGA-EE-A2GO TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 
      101.95        14.30        55.59        19.56        67.13        21.67 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG 
       28.80        19.76        61.51        47.28       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN 
       16.96       204.62       144.76       203.01       167.87        47.54 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU 
      248.61        43.23       103.56       136.44        41.59        53.26 
TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG 
      122.73        25.84         3.68        26.73        13.81        23.47 
TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N 
      138.77        12.59        26.37         6.41       131.08        44.05 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 
       79.99        80.32       216.92        48.59       228.59       202.62 
TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD 
       28.08         7.76        27.68        48.85       357.37        53.52 
TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK 
       40.27        15.45         9.70        32.71        47.38        23.93 
TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU 
      101.26        74.73        11.41       148.77        53.16        26.56 
TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 
       49.48        27.06        27.02         0.20        76.41       120.46 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
      117.93        84.72        10.09        64.41        62.76        32.48 
TCGA-GN-A26D 
       39.58 

  KIAA1257 MUTATED KIAA1257 WILD-TYPE 
              2.56               0.20 
  KIAA1257 MUTATED KIAA1257 WILD-TYPE 
            133.55             357.37 
  KIAA1257 MUTATED KIAA1257 WILD-TYPE 
             20.91              47.54 
[1] "2.6 - 133.6 (20.9)" "0.2 - 357.4 (47.5)"
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JF         TCGA-D3-A2JK 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D3-A3C6         TCGA-D3-A3CC         TCGA-D3-A3CE 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D3-A3CF         TCGA-D3-A3MO         TCGA-D3-A3MV 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D9-A148         TCGA-D9-A149         TCGA-D9-A1JW 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D9-A1JX         TCGA-DA-A1HV         TCGA-DA-A1HW 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-DA-A1HY         TCGA-DA-A1I0         TCGA-DA-A1I1 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-DA-A1I2         TCGA-DA-A1I4         TCGA-DA-A1I5 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-DA-A1I7         TCGA-DA-A1I8         TCGA-DA-A1IA 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-DA-A1IB         TCGA-DA-A1IC         TCGA-DA-A3F2 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-DA-A3F3         TCGA-DA-A3F5         TCGA-DA-A3F8 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A17X         TCGA-EE-A17Z         TCGA-EE-A181 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A182         TCGA-EE-A183         TCGA-EE-A185 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A20B         TCGA-EE-A20F         TCGA-EE-A20H 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A29A         TCGA-EE-A29C         TCGA-EE-A29D 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A29E         TCGA-EE-A29H         TCGA-EE-A29L 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE"   "KIAA1257 MUTATED" 
        TCGA-EE-A29M         TCGA-EE-A29N         TCGA-EE-A29P 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A29Q         TCGA-EE-A29R         TCGA-EE-A29S 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A29T         TCGA-EE-A29V         TCGA-EE-A29X 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2A0         TCGA-EE-A2A1         TCGA-EE-A2A2 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2A5         TCGA-EE-A2A6         TCGA-EE-A2GB 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2GC         TCGA-EE-A2GD         TCGA-EE-A2GE 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2GH         TCGA-EE-A2GI         TCGA-EE-A2GJ 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2GK         TCGA-EE-A2GL         TCGA-EE-A2GM 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2GN         TCGA-EE-A2GO         TCGA-EE-A2GP 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE"   "KIAA1257 MUTATED" 
        TCGA-EE-A2GR         TCGA-EE-A2GS         TCGA-EE-A2GT 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2GU         TCGA-EE-A2M5         TCGA-EE-A2M6 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE"   "KIAA1257 MUTATED" 
        TCGA-EE-A2M7         TCGA-EE-A2M8         TCGA-EE-A2MC 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2MD         TCGA-EE-A2ME         TCGA-EE-A2MG 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2MH         TCGA-EE-A2MI         TCGA-EE-A2MJ 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE"   "KIAA1257 MUTATED" 
        TCGA-EE-A2MK         TCGA-EE-A2ML         TCGA-EE-A2MM 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2MN         TCGA-EE-A2MP         TCGA-EE-A2MQ 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2MR         TCGA-EE-A2MS         TCGA-EE-A2MT 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2MU         TCGA-EE-A3AA         TCGA-EE-A3AB 
"KIAA1257 WILD-TYPE"   "KIAA1257 MUTATED" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A3AC         TCGA-EE-A3AD         TCGA-EE-A3AE 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A3AF         TCGA-EE-A3AG         TCGA-EE-A3AH 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-ER-A19D         TCGA-ER-A19F         TCGA-ER-A19J 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-ER-A19L         TCGA-ER-A19N         TCGA-ER-A1A1 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-ER-A3ET         TCGA-FS-A1YW         TCGA-FS-A1YX 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-FS-A1YY         TCGA-FS-A1Z0         TCGA-FS-A1Z3 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE"   "KIAA1257 MUTATED" 
        TCGA-FS-A1Z4         TCGA-FS-A1Z7         TCGA-FS-A1ZA 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-FS-A1ZB         TCGA-FS-A1ZC         TCGA-FS-A1ZD 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZQ 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE"   "KIAA1257 MUTATED" 
        TCGA-FS-A1ZR         TCGA-FS-A1ZS         TCGA-FS-A1ZT 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-FS-A1ZU         TCGA-FS-A1ZW         TCGA-FS-A1ZY 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-FS-A1ZZ         TCGA-FW-A3I3         TCGA-GN-A261 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-GN-A262         TCGA-GN-A264         TCGA-GN-A265 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-GN-A266         TCGA-GN-A267         TCGA-GN-A268 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-GN-A26A         TCGA-GN-A26D 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JF         TCGA-D3-A2JK 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D3-A3C6         TCGA-D3-A3CC         TCGA-D3-A3CE 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D3-A3CF         TCGA-D3-A3MO         TCGA-D3-A3MV 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D9-A148         TCGA-D9-A149         TCGA-D9-A1JW 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D9-A1JX         TCGA-DA-A1HV         TCGA-DA-A1HW 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-DA-A1HY         TCGA-DA-A1I0         TCGA-DA-A1I1 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-DA-A1I2         TCGA-DA-A1I4         TCGA-DA-A1I5 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-DA-A1I7         TCGA-DA-A1I8         TCGA-DA-A1IA 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-DA-A1IB         TCGA-DA-A1IC         TCGA-DA-A3F2 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-DA-A3F3         TCGA-DA-A3F5         TCGA-DA-A3F8 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A17X         TCGA-EE-A17Z         TCGA-EE-A181 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A182         TCGA-EE-A183         TCGA-EE-A185 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A20B         TCGA-EE-A20F         TCGA-EE-A20H 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A29A         TCGA-EE-A29C         TCGA-EE-A29D 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A29E         TCGA-EE-A29H         TCGA-EE-A29L 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE"   "KIAA1257 MUTATED" 
        TCGA-EE-A29M         TCGA-EE-A29N         TCGA-EE-A29P 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A29Q         TCGA-EE-A29R         TCGA-EE-A29S 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A29T         TCGA-EE-A29V         TCGA-EE-A29X 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2A0         TCGA-EE-A2A1         TCGA-EE-A2A2 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2A5         TCGA-EE-A2A6         TCGA-EE-A2GB 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2GC         TCGA-EE-A2GD         TCGA-EE-A2GE 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2GH         TCGA-EE-A2GI         TCGA-EE-A2GJ 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2GK         TCGA-EE-A2GL         TCGA-EE-A2GM 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2GN         TCGA-EE-A2GO         TCGA-EE-A2GP 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE"   "KIAA1257 MUTATED" 
        TCGA-EE-A2GR         TCGA-EE-A2GS         TCGA-EE-A2GT 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2GU         TCGA-EE-A2M5         TCGA-EE-A2M6 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE"   "KIAA1257 MUTATED" 
        TCGA-EE-A2M7         TCGA-EE-A2M8         TCGA-EE-A2MC 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2MD         TCGA-EE-A2ME         TCGA-EE-A2MG 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2MH         TCGA-EE-A2MI         TCGA-EE-A2MJ 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE"   "KIAA1257 MUTATED" 
        TCGA-EE-A2MK         TCGA-EE-A2ML         TCGA-EE-A2MM 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2MN         TCGA-EE-A2MP         TCGA-EE-A2MQ 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2MR         TCGA-EE-A2MS         TCGA-EE-A2MT 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2MU         TCGA-EE-A3AA         TCGA-EE-A3AB 
"KIAA1257 WILD-TYPE"   "KIAA1257 MUTATED" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A3AC         TCGA-EE-A3AD         TCGA-EE-A3AE 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A3AF         TCGA-EE-A3AG         TCGA-EE-A3AH 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-ER-A19D         TCGA-ER-A19F         TCGA-ER-A19J 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-ER-A19L         TCGA-ER-A19N         TCGA-ER-A1A1 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-ER-A3ET         TCGA-FS-A1YW         TCGA-FS-A1YX 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-FS-A1YY         TCGA-FS-A1Z0         TCGA-FS-A1Z3 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE"   "KIAA1257 MUTATED" 
        TCGA-FS-A1Z4         TCGA-FS-A1Z7         TCGA-FS-A1ZA 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-FS-A1ZB         TCGA-FS-A1ZC         TCGA-FS-A1ZD 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZQ 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE"   "KIAA1257 MUTATED" 
        TCGA-FS-A1ZR         TCGA-FS-A1ZS         TCGA-FS-A1ZT 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-FS-A1ZU         TCGA-FS-A1ZW         TCGA-FS-A1ZY 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-FS-A1ZZ         TCGA-FW-A3I3         TCGA-GN-A261 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-GN-A262         TCGA-GN-A264         TCGA-GN-A265 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-GN-A266         TCGA-GN-A267         TCGA-GN-A268 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-GN-A26A         TCGA-GN-A26D 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JF         TCGA-D3-A2JK 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D3-A3C6         TCGA-D3-A3CC         TCGA-D3-A3CE 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D3-A3CF         TCGA-D3-A3MO         TCGA-D3-A3MV 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D9-A148         TCGA-D9-A149         TCGA-D9-A1JW 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-D9-A1JX         TCGA-DA-A1HV         TCGA-DA-A1HW 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-DA-A1HY         TCGA-DA-A1I0         TCGA-DA-A1I1 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-DA-A1I2         TCGA-DA-A1I4         TCGA-DA-A1I5 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-DA-A1I7         TCGA-DA-A1I8         TCGA-DA-A1IA 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-DA-A1IB         TCGA-DA-A1IC         TCGA-DA-A3F2 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-DA-A3F3         TCGA-DA-A3F5         TCGA-DA-A3F8 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A17X         TCGA-EE-A17Z         TCGA-EE-A181 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A182         TCGA-EE-A183         TCGA-EE-A185 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A20B         TCGA-EE-A20F         TCGA-EE-A20H 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A29A         TCGA-EE-A29C         TCGA-EE-A29D 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A29E         TCGA-EE-A29H         TCGA-EE-A29L 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE"   "KIAA1257 MUTATED" 
        TCGA-EE-A29M         TCGA-EE-A29N         TCGA-EE-A29P 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A29Q         TCGA-EE-A29R         TCGA-EE-A29S 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A29T         TCGA-EE-A29V         TCGA-EE-A29X 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2A0         TCGA-EE-A2A1         TCGA-EE-A2A2 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2A5         TCGA-EE-A2A6         TCGA-EE-A2GB 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2GC         TCGA-EE-A2GD         TCGA-EE-A2GE 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2GH         TCGA-EE-A2GI         TCGA-EE-A2GJ 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2GK         TCGA-EE-A2GL         TCGA-EE-A2GM 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2GN         TCGA-EE-A2GO         TCGA-EE-A2GP 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE"   "KIAA1257 MUTATED" 
        TCGA-EE-A2GR         TCGA-EE-A2GS         TCGA-EE-A2GT 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2GU         TCGA-EE-A2M5         TCGA-EE-A2M6 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE"   "KIAA1257 MUTATED" 
        TCGA-EE-A2M7         TCGA-EE-A2M8         TCGA-EE-A2MC 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2MD         TCGA-EE-A2ME         TCGA-EE-A2MG 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2MH         TCGA-EE-A2MI         TCGA-EE-A2MJ 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE"   "KIAA1257 MUTATED" 
        TCGA-EE-A2MK         TCGA-EE-A2ML         TCGA-EE-A2MM 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2MN         TCGA-EE-A2MP         TCGA-EE-A2MQ 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2MR         TCGA-EE-A2MS         TCGA-EE-A2MT 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A2MU         TCGA-EE-A3AA         TCGA-EE-A3AB 
"KIAA1257 WILD-TYPE"   "KIAA1257 MUTATED" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A3AC         TCGA-EE-A3AD         TCGA-EE-A3AE 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-EE-A3AF         TCGA-EE-A3AG         TCGA-EE-A3AH 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-ER-A19D         TCGA-ER-A19F         TCGA-ER-A19J 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-ER-A19L         TCGA-ER-A19N         TCGA-ER-A1A1 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-ER-A3ET         TCGA-FS-A1YW         TCGA-FS-A1YX 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-FS-A1YY         TCGA-FS-A1Z0         TCGA-FS-A1Z3 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE"   "KIAA1257 MUTATED" 
        TCGA-FS-A1Z4         TCGA-FS-A1Z7         TCGA-FS-A1ZA 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-FS-A1ZB         TCGA-FS-A1ZC         TCGA-FS-A1ZD 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZQ 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE"   "KIAA1257 MUTATED" 
        TCGA-FS-A1ZR         TCGA-FS-A1ZS         TCGA-FS-A1ZT 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-FS-A1ZU         TCGA-FS-A1ZW         TCGA-FS-A1ZY 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-FS-A1ZZ         TCGA-FW-A3I3         TCGA-GN-A261 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-GN-A262         TCGA-GN-A264         TCGA-GN-A265 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-GN-A266         TCGA-GN-A267         TCGA-GN-A268 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
        TCGA-GN-A26A         TCGA-GN-A26D 
"KIAA1257 WILD-TYPE" "KIAA1257 WILD-TYPE" 
[1] "hr=" "1.8"
D41V2, continuous
                    vv
clus                 DISTANT METASTASIS PRIMARY TUMOR
  KIAA1257 MUTATED                    2             0
  KIAA1257 WILD-TYPE                 20             1
                    vv
clus                 REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  KIAA1257 MUTATED                                                                                          1
  KIAA1257 WILD-TYPE                                                                                       31
                    vv
clus                 REGIONAL LYMPH NODE
  KIAA1257 MUTATED                     4
  KIAA1257 WILD-TYPE                 100
D41V3, multiclass
                                                                                          clus
vv                                                                                         KIAA1257 MUTATED
  DISTANT METASTASIS                                                                                      2
  PRIMARY TUMOR                                                                                           0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                1
  REGIONAL LYMPH NODE                                                                                     4
                                                                                          clus
vv                                                                                         KIAA1257 WILD-TYPE
  DISTANT METASTASIS                                                                                       20
  PRIMARY TUMOR                                                                                             1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                 31
  REGIONAL LYMPH NODE                                                                                     100
D41V4, binary
                    cls
clus                  0  1
  KIAA1257 MUTATED    1  6
  KIAA1257 WILD-TYPE 59 93
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA1257 MUTATED      1    6
  KIAA1257 WILD-TYPE   59   93
        clus
vv       KIAA1257 MUTATED KIAA1257 WILD-TYPE
  FEMALE                1                 59
  MALE                  6                 93
                    vv
clus                  M0  M1 M1A M1B M1C
  KIAA1257 MUTATED     5   0   0   0   0
  KIAA1257 WILD-TYPE 133   2   1   2   2
D41V5, multiclass
                    vv
clus                 N0 N1 N1A N1B N2A N2B N2C N3 NX
  KIAA1257 MUTATED    3  0   1   0   0   0   0  1  0
  KIAA1257 WILD-TYPE 84  2   6  15   4  10   5 13  2
D41V6, multiclass
D41V7, continuous
                    vv
clus                 I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  KIAA1257 MUTATED             1       1        0        0        1         0
  KIAA1257 WILD-TYPE           2      16       10       12       17         7
                    vv
clus                 STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  KIAA1257 MUTATED           0         0         0          0          1
  KIAA1257 WILD-TYPE         9         7         7          6         16
                    vv
clus                 STAGE IIIC STAGE IV
  KIAA1257 MUTATED            1        0
  KIAA1257 WILD-TYPE         20        5
D41V8, multiclass

Clustering(42) Variable = USP17L2 MUTATION ANALYSIS
D42V1, survival
                   sevent
clus2                0  1
  USP17L2 MUTATED    7  8
  USP17L2 WILD-TYPE 66 77
  USP17L2 MUTATED USP17L2 WILD-TYPE 
               15               143 
  USP17L2 MUTATED USP17L2 WILD-TYPE 
                8                77 
$`USP17L2 MUTATED`
TCGA-D3-A1Q6 TCGA-D3-A2JF TCGA-DA-A1I4 TCGA-EE-A181 TCGA-EE-A20B TCGA-EE-A29M 
       71.80        48.76        35.93        33.73       109.64        44.35 
TCGA-EE-A2A2 TCGA-EE-A2GI TCGA-EE-A2MJ TCGA-EE-A2MR TCGA-EE-A2MU TCGA-EE-A3AH 
       24.43        22.55        96.23       103.56        53.26       138.77 
TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-GN-A266 
       48.85        53.52        10.09 

$`USP17L2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.57       112.54       121.22        28.08        31.59        43.40 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC 
       65.49        23.77        11.87        12.10        58.03        71.24 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 TCGA-D9-A149 
       60.23        24.53         9.30        21.47       148.31        49.74 
TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        2.70         6.38        48.89        36.03       117.17        20.38 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
      194.83       176.55       107.34        61.18        53.92        65.92 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       23.44        68.09        28.60        10.49       215.44        15.68 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20F 
       29.82         8.65        14.70        26.86         4.93        78.87 
TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H 
      168.26        63.32        47.84        13.97        39.62        32.19 
TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
        2.56        18.58        56.42        37.35        14.47        55.89 
TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A5 
      345.96        25.87        17.92        46.82        78.94        39.25 
TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH 
       58.75        47.54        43.23       314.53       135.91       182.01 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO 
       89.33        54.71        55.00        75.48        90.94       101.95 
TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 
       13.87        14.30        55.59        19.56        67.13        21.67 
TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME 
      129.24        28.80        19.76        61.51        47.28       103.27 
TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM 
      103.17        16.96       204.62       144.76       203.01       167.87 
TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A3AA 
       47.54       248.61        43.23       136.44        41.59         4.24 
TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG 
      122.73        25.84         3.68        26.73        13.81        23.47 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 
       12.59        26.37         6.41       131.08        44.05        79.99 
TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 
       80.32       216.92        48.59       228.59       202.62        20.91 
TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZC TCGA-FS-A1ZE TCGA-FS-A1ZF 
       28.08         7.76        27.68       357.37        40.27        15.45 
TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP 
        9.70        32.71        47.38        23.93       101.26        74.73 
TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW 
      133.55        11.41       148.77        53.16        26.56        49.48 
TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
       27.06        27.02         0.20        76.41       120.46       117.93 
TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       84.72        64.41        62.76        32.48        39.58 

  USP17L2 MUTATED USP17L2 WILD-TYPE 
            10.09              0.20 
  USP17L2 MUTATED USP17L2 WILD-TYPE 
           138.77            357.37 
  USP17L2 MUTATED USP17L2 WILD-TYPE 
            48.85             47.38 
[1] "10.1 - 138.8 (48.9)" "0.2 - 357.4 (47.4)" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
  "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
  "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
  "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
[1] "hr=" "1.1"
D42V2, continuous
                   vv
clus                DISTANT METASTASIS PRIMARY TUMOR
  USP17L2 MUTATED                    2             1
  USP17L2 WILD-TYPE                 20             0
                   vv
clus                REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  USP17L2 MUTATED                                                                                          5
  USP17L2 WILD-TYPE                                                                                       27
                   vv
clus                REGIONAL LYMPH NODE
  USP17L2 MUTATED                     7
  USP17L2 WILD-TYPE                  97
D42V3, multiclass
                                                                                          clus
vv                                                                                         USP17L2 MUTATED
  DISTANT METASTASIS                                                                                     2
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               5
  REGIONAL LYMPH NODE                                                                                    7
                                                                                          clus
vv                                                                                         USP17L2 WILD-TYPE
  DISTANT METASTASIS                                                                                      20
  PRIMARY TUMOR                                                                                            0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                27
  REGIONAL LYMPH NODE                                                                                     97
D42V4, binary
                   cls
clus                 0  1
  USP17L2 MUTATED    3 12
  USP17L2 WILD-TYPE 57 87
[1] "tbl2"
                   cls
clus                [,1] [,2]
  USP17L2 MUTATED      3   12
  USP17L2 WILD-TYPE   57   87
        clus
vv       USP17L2 MUTATED USP17L2 WILD-TYPE
  FEMALE               3                57
  MALE                12                87
                   vv
clus                 M0  M1 M1A M1B M1C
  USP17L2 MUTATED    14   0   0   0   0
  USP17L2 WILD-TYPE 124   2   1   2   2
D42V5, multiclass
                   vv
clus                N0 N1 N1A N1B N2A N2B N2C N3 NX
  USP17L2 MUTATED   11  0   0   2   0   1   0  0  0
  USP17L2 WILD-TYPE 76  2   7  13   4   9   5 14  2
D42V6, multiclass
D42V7, continuous
                   vv
clus                I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  USP17L2 MUTATED             0       1        3        1        5         1
  USP17L2 WILD-TYPE           3      16        7       11       13         6
                   vv
clus                STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  USP17L2 MUTATED           0         0         1          0          2
  USP17L2 WILD-TYPE         9         7         6          6         15
                   vv
clus                STAGE IIIC STAGE IV
  USP17L2 MUTATED            0        0
  USP17L2 WILD-TYPE         21        5
D42V8, multiclass

Clustering(43) Variable = SPAG16 MUTATION ANALYSIS
D43V1, survival
                  sevent
clus2               0  1
  SPAG16 MUTATED    5  8
  SPAG16 WILD-TYPE 68 77
  SPAG16 MUTATED SPAG16 WILD-TYPE 
              13              145 
  SPAG16 MUTATED SPAG16 WILD-TYPE 
               8               77 
$`SPAG16 MUTATED`
TCGA-EE-A29E TCGA-EE-A29N TCGA-EE-A29X TCGA-EE-A2A5 TCGA-EE-A2GO TCGA-EE-A2M5 
       39.62        18.58        17.92        39.25       101.95        21.67 
TCGA-EE-A2MI TCGA-EE-A2MS TCGA-EE-A3AD TCGA-FS-A1Z7 TCGA-FS-A1ZW TCGA-FS-A1ZZ 
      204.62       136.44         3.68         7.76        49.48        27.02 
TCGA-GN-A266 
       10.09 

$`SPAG16 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW 
      148.31        49.74         2.70         6.38        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       61.18        53.92        65.92        23.44        68.09        28.60 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
       10.49       215.44        15.68        29.82         8.65        33.73 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H 
       14.70        26.86         4.93       109.64        78.87       168.26 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M 
       63.32        47.84        13.97        32.19         2.56        44.35 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V 
       56.42        37.35        14.47        55.89       345.96        25.87 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC 
       46.82        78.94        24.43        58.75        47.54        43.23 
TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK 
      314.53       135.91       182.01        22.55        89.33        54.71 
TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS 
       55.00        75.48        90.94        13.87        14.30        55.59 
TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC 
       19.56        67.13       129.24        28.80        19.76        61.51 
TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MJ TCGA-EE-A2MK 
       47.28       103.27       103.17        16.96        96.23       144.76 
TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR 
      203.01       167.87        47.54       248.61        43.23       103.56 
TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AE 
       41.59        53.26         4.24       122.73        25.84        26.73 
TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       13.81        23.47       138.77        12.59        26.37         6.41 
TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX 
      131.08        44.05        79.99        80.32       216.92        48.59 
TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1ZA TCGA-FS-A1ZB 
      228.59       202.62        20.91        28.08        27.68        48.85 
TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH 
      357.37        53.52        40.27        15.45         9.70        32.71 
TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR 
       47.38        23.93       101.26        74.73       133.55        11.41 
TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZY TCGA-FW-A3I3 TCGA-GN-A261 
      148.77        53.16        26.56        27.06         0.20        76.41 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
      120.46       117.93        84.72        64.41        62.76        32.48 
TCGA-GN-A26D 
       39.58 

  SPAG16 MUTATED SPAG16 WILD-TYPE 
            3.68             0.20 
  SPAG16 MUTATED SPAG16 WILD-TYPE 
          204.62           357.37 
  SPAG16 MUTATED SPAG16 WILD-TYPE 
           27.02            48.59 
[1] "3.7 - 204.6 (27.0)" "0.2 - 357.4 (48.6)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" "SPAG16 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" "SPAG16 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"SPAG16 WILD-TYPE"   "SPAG16 MUTATED" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" "SPAG16 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"SPAG16 WILD-TYPE"   "SPAG16 MUTATED" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"SPAG16 WILD-TYPE"   "SPAG16 MUTATED" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"SPAG16 WILD-TYPE"   "SPAG16 MUTATED" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" "SPAG16 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" "SPAG16 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"SPAG16 WILD-TYPE"   "SPAG16 MUTATED" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" "SPAG16 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"SPAG16 WILD-TYPE"   "SPAG16 MUTATED" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"SPAG16 WILD-TYPE"   "SPAG16 MUTATED" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"SPAG16 WILD-TYPE"   "SPAG16 MUTATED" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" "SPAG16 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" "SPAG16 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"SPAG16 WILD-TYPE"   "SPAG16 MUTATED" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" "SPAG16 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"SPAG16 WILD-TYPE"   "SPAG16 MUTATED" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"SPAG16 WILD-TYPE"   "SPAG16 MUTATED" "SPAG16 WILD-TYPE"   "SPAG16 MUTATED" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"SPAG16 WILD-TYPE"   "SPAG16 MUTATED" "SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"SPAG16 WILD-TYPE" "SPAG16 WILD-TYPE" 
[1] "hr=" "1.6"
D43V2, continuous
                  vv
clus               DISTANT METASTASIS PRIMARY TUMOR
  SPAG16 MUTATED                    1             0
  SPAG16 WILD-TYPE                 21             1
                  vv
clus               REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  SPAG16 MUTATED                                                                                          3
  SPAG16 WILD-TYPE                                                                                       29
                  vv
clus               REGIONAL LYMPH NODE
  SPAG16 MUTATED                     9
  SPAG16 WILD-TYPE                  95
D43V3, multiclass
                                                                                          clus
vv                                                                                         SPAG16 MUTATED
  DISTANT METASTASIS                                                                                    1
  PRIMARY TUMOR                                                                                         0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              3
  REGIONAL LYMPH NODE                                                                                   9
                                                                                          clus
vv                                                                                         SPAG16 WILD-TYPE
  DISTANT METASTASIS                                                                                     21
  PRIMARY TUMOR                                                                                           1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               29
  REGIONAL LYMPH NODE                                                                                    95
D43V4, binary
                  cls
clus                0  1
  SPAG16 MUTATED    3 10
  SPAG16 WILD-TYPE 57 89
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SPAG16 MUTATED      3   10
  SPAG16 WILD-TYPE   57   89
        clus
vv       SPAG16 MUTATED SPAG16 WILD-TYPE
  FEMALE              3               57
  MALE               10               89
                  vv
clus                M0  M1 M1A M1B M1C
  SPAG16 MUTATED    11   0   0   0   0
  SPAG16 WILD-TYPE 127   2   1   2   2
D43V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2A N2B N2C N3 NX
  SPAG16 MUTATED    8  0   1   2   0   0   0  0  0
  SPAG16 WILD-TYPE 79  2   6  13   4  10   5 14  2
D43V6, multiclass
D43V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  SPAG16 MUTATED             0       1        0        2        2         0
  SPAG16 WILD-TYPE           3      16       10       10       16         7
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  SPAG16 MUTATED           2         0         0          0          2
  SPAG16 WILD-TYPE         7         7         7          6         15
                  vv
clus               STAGE IIIC STAGE IV
  SPAG16 MUTATED            1        0
  SPAG16 WILD-TYPE         20        5
D43V8, multiclass

Clustering(44) Variable = OR4M2 MUTATION ANALYSIS
D44V1, survival
                 sevent
clus2              0  1
  OR4M2 MUTATED   10  7
  OR4M2 WILD-TYPE 63 78
  OR4M2 MUTATED OR4M2 WILD-TYPE 
             17             141 
  OR4M2 MUTATED OR4M2 WILD-TYPE 
              7              78 
$`OR4M2 MUTATED`
TCGA-DA-A1HV TCGA-DA-A1I5 TCGA-EE-A181 TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29M 
       48.89       107.34        33.73        39.62         2.56        44.35 
TCGA-EE-A29S TCGA-EE-A2A0 TCGA-EE-A2GC TCGA-EE-A2GN TCGA-EE-A2GP TCGA-EE-A2M5 
       55.89        46.82        43.23        90.94        13.87        21.67 
TCGA-EE-A2MM TCGA-EE-A2MS TCGA-EE-A3AD TCGA-FS-A1ZS TCGA-FS-A1ZZ 
      167.87       136.44         3.68       148.77        27.02 

$`OR4M2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HW TCGA-DA-A1HY 
      148.31        49.74         2.70         6.38        36.03       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 
       20.38       194.83       176.55        35.93        61.18        53.92 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       65.92        23.44        68.09        28.60        10.49       215.44 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       15.68        29.82         8.65        14.70        26.86         4.93 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
      109.64        78.87       168.26        63.32        47.84        13.97 
TCGA-EE-A29H TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29T 
       32.19        18.58        56.42        37.35        14.47       345.96 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
       25.87        17.92        78.94        24.43        39.25        58.75 
TCGA-EE-A2GB TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ 
       47.54       314.53       135.91       182.01        22.55        89.33 
TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GO TCGA-EE-A2GR TCGA-EE-A2GS 
       54.71        55.00        75.48       101.95        14.30        55.59 
TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC 
       19.56        67.13       129.24        28.80        19.76        61.51 
TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ 
       47.28       103.27       103.17        16.96       204.62        96.23 
TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR 
      144.76       203.01        47.54       248.61        43.23       103.56 
TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AE 
       41.59        53.26         4.24       122.73        25.84        26.73 
TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       13.81        23.47       138.77        12.59        26.37         6.41 
TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX 
      131.08        44.05        79.99        80.32       216.92        48.59 
TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA 
      228.59       202.62        20.91        28.08         7.76        27.68 
TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG 
       48.85       357.37        53.52        40.27        15.45         9.70 
TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ 
       32.71        47.38        23.93       101.26        74.73       133.55 
TCGA-FS-A1ZR TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FW-A3I3 
       11.41        53.16        26.56        49.48        27.06         0.20 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 
       76.41       120.46       117.93        84.72        10.09        64.41 
TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       62.76        32.48        39.58 

  OR4M2 MUTATED OR4M2 WILD-TYPE 
           2.56            0.20 
  OR4M2 MUTATED OR4M2 WILD-TYPE 
         167.87          357.37 
  OR4M2 MUTATED OR4M2 WILD-TYPE 
          44.35           47.84 
[1] "2.6 - 167.9 (44.4)" "0.2 - 357.4 (47.8)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
  "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
  "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
  "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
[1] "hr=" "1.2"
D44V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  OR4M2 MUTATED                    2             1
  OR4M2 WILD-TYPE                 20             0
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  OR4M2 MUTATED                                                                                          2
  OR4M2 WILD-TYPE                                                                                       30
                 vv
clus              REGIONAL LYMPH NODE
  OR4M2 MUTATED                    12
  OR4M2 WILD-TYPE                  92
D44V3, multiclass
                                                                                          clus
vv                                                                                         OR4M2 MUTATED
  DISTANT METASTASIS                                                                                   2
  PRIMARY TUMOR                                                                                        1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             2
  REGIONAL LYMPH NODE                                                                                 12
                                                                                          clus
vv                                                                                         OR4M2 WILD-TYPE
  DISTANT METASTASIS                                                                                    20
  PRIMARY TUMOR                                                                                          0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              30
  REGIONAL LYMPH NODE                                                                                   92
D44V4, binary
                 cls
clus               0  1
  OR4M2 MUTATED    7 10
  OR4M2 WILD-TYPE 53 89
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4M2 MUTATED      7   10
  OR4M2 WILD-TYPE   53   89
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  FEMALE             7              53
  MALE              10              89
                 vv
clus               M0  M1 M1A M1B M1C
  OR4M2 MUTATED    15   0   0   0   1
  OR4M2 WILD-TYPE 123   2   1   2   1
D44V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2A N2B N2C N3 NX
  OR4M2 MUTATED   12  0   1   1   0   1   0  1  0
  OR4M2 WILD-TYPE 75  2   6  14   4   9   5 13  2
D44V6, multiclass
D44V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  OR4M2 MUTATED             0       2        0        1        3         3
  OR4M2 WILD-TYPE           3      15       10       11       15         4
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  OR4M2 MUTATED           2         0         0          0          3
  OR4M2 WILD-TYPE         7         7         7          6         14
                 vv
clus              STAGE IIIC STAGE IV
  OR4M2 MUTATED            1        1
  OR4M2 WILD-TYPE         20        4
D44V8, multiclass

Clustering(45) Variable = GFRAL MUTATION ANALYSIS
D45V1, survival
                 sevent
clus2              0  1
  GFRAL MUTATED    7 14
  GFRAL WILD-TYPE 66 71
  GFRAL MUTATED GFRAL WILD-TYPE 
             21             137 
  GFRAL MUTATED GFRAL WILD-TYPE 
             14              71 
$`GFRAL MUTATED`
TCGA-D3-A1Q8 TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29L 
       28.08        33.73        26.86        47.84        13.97         2.56 
TCGA-EE-A29Q TCGA-EE-A2GM TCGA-EE-A2GR TCGA-EE-A2MG TCGA-EE-A2MI TCGA-EE-A3AA 
       37.35        75.48        14.30       103.17       204.62         4.24 
TCGA-EE-A3AH TCGA-FS-A1YY TCGA-FS-A1Z3 TCGA-FS-A1ZA TCGA-FS-A1ZC TCGA-FS-A1ZE 
      138.77       228.59        20.91        27.68       357.37        40.27 
TCGA-FS-A1ZM TCGA-FS-A1ZQ TCGA-GN-A268 
      101.26       133.55        62.76 

$`GFRAL WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.57       112.54        71.80       121.22        31.59        43.40 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 
       65.49        23.77        11.87        48.76        12.10        58.03 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
       71.24        60.23        24.53         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
       49.74         2.70         6.38        48.89        36.03       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
       20.38       194.83       176.55        35.93       107.34        61.18 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       53.92        65.92        23.44        68.09        28.60        10.49 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A185 
      215.44        15.68        29.82         8.65        14.70         4.93 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29E TCGA-EE-A29H 
      109.64        78.87       168.26        63.32        39.62        32.19 
TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T 
       44.35        18.58        56.42        14.47        55.89       345.96 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
       25.87        17.92        46.82        78.94        24.43        39.25 
TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH 
       58.75        47.54        43.23       314.53       135.91       182.01 
TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GN TCGA-EE-A2GO 
       22.55        89.33        54.71        55.00        90.94       101.95 
TCGA-EE-A2GP TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 
       13.87        55.59        19.56        67.13        21.67       129.24 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MH 
       28.80        19.76        61.51        47.28       103.27        16.96 
TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP 
       96.23       144.76       203.01       167.87        47.54       248.61 
TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AB 
       43.23       103.56       136.44        41.59        53.26       122.73 
TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-ER-A19D 
       25.84         3.68        26.73        13.81        23.47        12.59 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
       26.37         6.41       131.08        44.05        79.99        80.32 
TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1Z0 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZB 
      216.92        48.59       202.62        28.08         7.76        48.85 
TCGA-FS-A1ZD TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK 
       53.52        15.45         9.70        32.71        47.38        23.93 
TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW 
       74.73        11.41       148.77        53.16        26.56        49.48 
TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
       27.06        27.02         0.20        76.41       120.46       117.93 
TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A26A TCGA-GN-A26D 
       84.72        10.09        64.41        32.48        39.58 

  GFRAL MUTATED GFRAL WILD-TYPE 
           2.56            0.20 
  GFRAL MUTATED GFRAL WILD-TYPE 
         357.37          345.96 
  GFRAL MUTATED GFRAL WILD-TYPE 
          40.27           47.54 
[1] "2.6 - 357.4 (40.3)" "0.2 - 346.0 (47.5)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
  "GFRAL MUTATED" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"GFRAL WILD-TYPE"   "GFRAL MUTATED" "GFRAL WILD-TYPE"   "GFRAL MUTATED" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"GFRAL WILD-TYPE"   "GFRAL MUTATED"   "GFRAL MUTATED" "GFRAL WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"GFRAL WILD-TYPE"   "GFRAL MUTATED" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"GFRAL WILD-TYPE"   "GFRAL MUTATED" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"GFRAL WILD-TYPE"   "GFRAL MUTATED" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"GFRAL WILD-TYPE"   "GFRAL MUTATED" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
  "GFRAL MUTATED" "GFRAL WILD-TYPE"   "GFRAL MUTATED" "GFRAL WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE"   "GFRAL MUTATED" "GFRAL WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"GFRAL WILD-TYPE"   "GFRAL MUTATED" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE"   "GFRAL MUTATED" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"GFRAL WILD-TYPE"   "GFRAL MUTATED" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
  "GFRAL MUTATED" "GFRAL WILD-TYPE"   "GFRAL MUTATED" "GFRAL WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
  "GFRAL MUTATED" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE"   "GFRAL MUTATED" "GFRAL WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
  "GFRAL MUTATED" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE"   "GFRAL MUTATED" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
  "GFRAL MUTATED" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"GFRAL WILD-TYPE"   "GFRAL MUTATED" "GFRAL WILD-TYPE"   "GFRAL MUTATED" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"GFRAL WILD-TYPE"   "GFRAL MUTATED"   "GFRAL MUTATED" "GFRAL WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"GFRAL WILD-TYPE"   "GFRAL MUTATED" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"GFRAL WILD-TYPE"   "GFRAL MUTATED" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"GFRAL WILD-TYPE"   "GFRAL MUTATED" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"GFRAL WILD-TYPE"   "GFRAL MUTATED" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
  "GFRAL MUTATED" "GFRAL WILD-TYPE"   "GFRAL MUTATED" "GFRAL WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE"   "GFRAL MUTATED" "GFRAL WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"GFRAL WILD-TYPE"   "GFRAL MUTATED" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE"   "GFRAL MUTATED" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"GFRAL WILD-TYPE"   "GFRAL MUTATED" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
  "GFRAL MUTATED" "GFRAL WILD-TYPE"   "GFRAL MUTATED" "GFRAL WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
  "GFRAL MUTATED" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE"   "GFRAL MUTATED" "GFRAL WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
  "GFRAL MUTATED" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE"   "GFRAL MUTATED" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
  "GFRAL MUTATED" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"GFRAL WILD-TYPE"   "GFRAL MUTATED" "GFRAL WILD-TYPE"   "GFRAL MUTATED" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"GFRAL WILD-TYPE"   "GFRAL MUTATED"   "GFRAL MUTATED" "GFRAL WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"GFRAL WILD-TYPE"   "GFRAL MUTATED" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"GFRAL WILD-TYPE"   "GFRAL MUTATED" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"GFRAL WILD-TYPE"   "GFRAL MUTATED" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"GFRAL WILD-TYPE"   "GFRAL MUTATED" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
  "GFRAL MUTATED" "GFRAL WILD-TYPE"   "GFRAL MUTATED" "GFRAL WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE"   "GFRAL MUTATED" "GFRAL WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"GFRAL WILD-TYPE"   "GFRAL MUTATED" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE"   "GFRAL MUTATED" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"GFRAL WILD-TYPE"   "GFRAL MUTATED" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
  "GFRAL MUTATED" "GFRAL WILD-TYPE"   "GFRAL MUTATED" "GFRAL WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
  "GFRAL MUTATED" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE"   "GFRAL MUTATED" "GFRAL WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
  "GFRAL MUTATED" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" "GFRAL WILD-TYPE"   "GFRAL MUTATED" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"GFRAL WILD-TYPE" "GFRAL WILD-TYPE" 
[1] "hr=" "1"  
D45V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  GFRAL MUTATED                    6             0
  GFRAL WILD-TYPE                 16             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  GFRAL MUTATED                                                                                          4
  GFRAL WILD-TYPE                                                                                       28
                 vv
clus              REGIONAL LYMPH NODE
  GFRAL MUTATED                    11
  GFRAL WILD-TYPE                  93
D45V3, multiclass
                                                                                          clus
vv                                                                                         GFRAL MUTATED
  DISTANT METASTASIS                                                                                   6
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             4
  REGIONAL LYMPH NODE                                                                                 11
                                                                                          clus
vv                                                                                         GFRAL WILD-TYPE
  DISTANT METASTASIS                                                                                    16
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              28
  REGIONAL LYMPH NODE                                                                                   93
D45V4, binary
                 cls
clus               0  1
  GFRAL MUTATED    7 14
  GFRAL WILD-TYPE 53 85
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GFRAL MUTATED      7   14
  GFRAL WILD-TYPE   53   85
        clus
vv       GFRAL MUTATED GFRAL WILD-TYPE
  FEMALE             7              53
  MALE              14              85
                 vv
clus               M0  M1 M1A M1B M1C
  GFRAL MUTATED    18   0   0   1   0
  GFRAL WILD-TYPE 120   2   1   1   2
D45V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2A N2B N2C N3 NX
  GFRAL MUTATED   14  0   0   1   0   0   2  2  0
  GFRAL WILD-TYPE 73  2   7  14   4  10   3 12  2
D45V6, multiclass
D45V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  GFRAL MUTATED             2       2        0        1        3         1
  GFRAL WILD-TYPE           1      15       10       11       15         6
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  GFRAL MUTATED           3         2         1          0          1
  GFRAL WILD-TYPE         6         5         6          6         16
                 vv
clus              STAGE IIIC STAGE IV
  GFRAL MUTATED            2        1
  GFRAL WILD-TYPE         19        4
D45V8, multiclass

Clustering(46) Variable = UNC119B MUTATION ANALYSIS
D46V1, survival
                   sevent
clus2                0  1
  UNC119B MUTATED    1  2
  UNC119B WILD-TYPE 72 83
  UNC119B MUTATED UNC119B WILD-TYPE 
                3               155 
  UNC119B MUTATED UNC119B WILD-TYPE 
                2                83 
$`UNC119B MUTATED`
TCGA-EE-A2M5 TCGA-EE-A2MJ TCGA-EE-A2MK 
       21.67        96.23       144.76 

$`UNC119B WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW 
      148.31        49.74         2.70         6.38        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       61.18        53.92        65.92        23.44        68.09        28.60 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
       10.49       215.44        15.68        29.82         8.65        33.73 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H 
       14.70        26.86         4.93       109.64        78.87       168.26 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L 
       63.32        47.84        13.97        39.62        32.19         2.56 
TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
       44.35        18.58        56.42        37.35        14.47        55.89 
TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
      345.96        25.87        17.92        46.82        78.94        24.43 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE 
       39.25        58.75        47.54        43.23       314.53       135.91 
TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM 
      182.01        22.55        89.33        54.71        55.00        75.48 
TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT 
       90.94       101.95        13.87        14.30        55.59        19.56 
TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD 
       67.13       129.24        28.80        19.76        61.51        47.28 
TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2ML TCGA-EE-A2MM 
      103.27       103.17        16.96       204.62       203.01       167.87 
TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT 
       47.54       248.61        43.23       103.56       136.44        41.59 
TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE 
       53.26         4.24       122.73        25.84         3.68        26.73 
TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       13.81        23.47       138.77        12.59        26.37         6.41 
TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX 
      131.08        44.05        79.99        80.32       216.92        48.59 
TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA 
      228.59       202.62        20.91        28.08         7.76        27.68 
TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG 
       48.85       357.37        53.52        40.27        15.45         9.70 
TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ 
       32.71        47.38        23.93       101.26        74.73       133.55 
TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY 
       11.41       148.77        53.16        26.56        49.48        27.06 
TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
       27.02         0.20        76.41       120.46       117.93        84.72 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       10.09        64.41        62.76        32.48        39.58 

  UNC119B MUTATED UNC119B WILD-TYPE 
            21.67              0.20 
  UNC119B MUTATED UNC119B WILD-TYPE 
           144.76            357.37 
  UNC119B MUTATED UNC119B WILD-TYPE 
            96.23             47.54 
[1] "21.7 - 144.8 (96.2)" "0.2 - 357.4 (47.5)" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"UNC119B WILD-TYPE"   "UNC119B MUTATED" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE"   "UNC119B MUTATED" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
  "UNC119B MUTATED" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"UNC119B WILD-TYPE"   "UNC119B MUTATED" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE"   "UNC119B MUTATED" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
  "UNC119B MUTATED" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"UNC119B WILD-TYPE"   "UNC119B MUTATED" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE"   "UNC119B MUTATED" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
  "UNC119B MUTATED" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"UNC119B WILD-TYPE" "UNC119B WILD-TYPE" 
[1] "hr=" "1"  
D46V2, continuous
                   vv
clus                DISTANT METASTASIS PRIMARY TUMOR
  UNC119B MUTATED                    0             0
  UNC119B WILD-TYPE                 22             1
                   vv
clus                REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  UNC119B MUTATED                                                                                          0
  UNC119B WILD-TYPE                                                                                       32
                   vv
clus                REGIONAL LYMPH NODE
  UNC119B MUTATED                     3
  UNC119B WILD-TYPE                 101
D46V3, multiclass
                                                                                          clus
vv                                                                                         UNC119B MUTATED
  DISTANT METASTASIS                                                                                     0
  PRIMARY TUMOR                                                                                          0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               0
  REGIONAL LYMPH NODE                                                                                    3
                                                                                          clus
vv                                                                                         UNC119B WILD-TYPE
  DISTANT METASTASIS                                                                                      22
  PRIMARY TUMOR                                                                                            1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                32
  REGIONAL LYMPH NODE                                                                                    101
D46V4, binary
                   cls
clus                 0  1
  UNC119B MUTATED    1  2
  UNC119B WILD-TYPE 59 97
[1] "tbl2"
                   cls
clus                [,1] [,2]
  UNC119B MUTATED      1    2
  UNC119B WILD-TYPE   59   97
        clus
vv       UNC119B MUTATED UNC119B WILD-TYPE
  FEMALE               1                59
  MALE                 2                97
                   vv
clus                 M0  M1 M1A M1B M1C
  UNC119B MUTATED     3   0   0   0   0
  UNC119B WILD-TYPE 135   2   1   2   2
D46V5, multiclass
                   vv
clus                N0 N1 N1A N1B N2A N2B N2C N3 NX
  UNC119B MUTATED    3  0   0   0   0   0   0  0  0
  UNC119B WILD-TYPE 84  2   7  15   4  10   5 14  2
D46V6, multiclass
D46V7, continuous
                   vv
clus                I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  UNC119B MUTATED             0       1        0        0        2         0
  UNC119B WILD-TYPE           3      16       10       12       16         7
                   vv
clus                STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  UNC119B MUTATED           0         0         0          0          0
  UNC119B WILD-TYPE         9         7         7          6         17
                   vv
clus                STAGE IIIC STAGE IV
  UNC119B MUTATED            0        0
  UNC119B WILD-TYPE         21        5
D46V8, multiclass

Clustering(47) Variable = PHGDH MUTATION ANALYSIS
D47V1, survival
                 sevent
clus2              0  1
  PHGDH MUTATED    3  4
  PHGDH WILD-TYPE 70 81
  PHGDH MUTATED PHGDH WILD-TYPE 
              7             151 
  PHGDH MUTATED PHGDH WILD-TYPE 
              4              81 
$`PHGDH MUTATED`
TCGA-D3-A2J6 TCGA-D3-A2JD TCGA-EE-A2GT TCGA-EE-A2MI TCGA-EE-A3AG TCGA-ER-A19F 
       43.40        11.87        19.56       204.62        23.47        26.37 
TCGA-GN-A265 
       84.72 

$`PHGDH WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC 
       65.49        23.77        48.76        12.10        58.03        71.24 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 TCGA-D9-A149 
       60.23        24.53         9.30        21.47       148.31        49.74 
TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        2.70         6.38        48.89        36.03       117.17        20.38 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
      194.83       176.55        35.93       107.34        61.18        53.92 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       65.92        23.44        68.09        28.60        10.49       215.44 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
       15.68        29.82         8.65        33.73        14.70        26.86 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.93       109.64        78.87       168.26        63.32        47.84 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N 
       13.97        39.62        32.19         2.56        44.35        18.58 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V 
       56.42        37.35        14.47        55.89       345.96        25.87 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
       17.92        46.82        78.94        24.43        39.25        58.75 
TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI 
       47.54        43.23       314.53       135.91       182.01        22.55 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO 
       89.33        54.71        55.00        75.48        90.94       101.95 
TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 
       13.87        14.30        55.59        67.13        21.67       129.24 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG 
       28.80        19.76        61.51        47.28       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN 
       16.96        96.23       144.76       203.01       167.87        47.54 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU 
      248.61        43.23       103.56       136.44        41.59        53.26 
TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF 
        4.24       122.73        25.84         3.68        26.73        13.81 
TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 
      138.77        12.59         6.41       131.08        44.05        79.99 
TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 
       80.32       216.92        48.59       228.59       202.62        20.91 
TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD 
       28.08         7.76        27.68        48.85       357.37        53.52 
TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK 
       40.27        15.45         9.70        32.71        47.38        23.93 
TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT 
      101.26        74.73       133.55        11.41       148.77        53.16 
TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 
       26.56        49.48        27.06        27.02         0.20        76.41 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
      120.46       117.93        10.09        64.41        62.76        32.48 
TCGA-GN-A26D 
       39.58 

  PHGDH MUTATED PHGDH WILD-TYPE 
          11.87            0.20 
  PHGDH MUTATED PHGDH WILD-TYPE 
         204.62          357.37 
  PHGDH MUTATED PHGDH WILD-TYPE 
          26.37           47.84 
[1] "11.9 - 204.6 (26.4)" "0.2 - 357.4 (47.8)" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE"   "PHGDH MUTATED" "PHGDH WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"PHGDH WILD-TYPE"   "PHGDH MUTATED" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE"   "PHGDH MUTATED" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE"   "PHGDH MUTATED" "PHGDH WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
  "PHGDH MUTATED" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE"   "PHGDH MUTATED" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
  "PHGDH MUTATED" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE"   "PHGDH MUTATED" "PHGDH WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"PHGDH WILD-TYPE"   "PHGDH MUTATED" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE"   "PHGDH MUTATED" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE"   "PHGDH MUTATED" "PHGDH WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
  "PHGDH MUTATED" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE"   "PHGDH MUTATED" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
  "PHGDH MUTATED" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE"   "PHGDH MUTATED" "PHGDH WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"PHGDH WILD-TYPE"   "PHGDH MUTATED" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE"   "PHGDH MUTATED" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE"   "PHGDH MUTATED" "PHGDH WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
  "PHGDH MUTATED" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE"   "PHGDH MUTATED" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
  "PHGDH MUTATED" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"PHGDH WILD-TYPE" "PHGDH WILD-TYPE" 
[1] "hr=" "1.2"
D47V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  PHGDH MUTATED                    0             0
  PHGDH WILD-TYPE                 22             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  PHGDH MUTATED                                                                                          1
  PHGDH WILD-TYPE                                                                                       31
                 vv
clus              REGIONAL LYMPH NODE
  PHGDH MUTATED                     6
  PHGDH WILD-TYPE                  98
D47V3, multiclass
                                                                                          clus
vv                                                                                         PHGDH MUTATED
  DISTANT METASTASIS                                                                                   0
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             1
  REGIONAL LYMPH NODE                                                                                  6
                                                                                          clus
vv                                                                                         PHGDH WILD-TYPE
  DISTANT METASTASIS                                                                                    22
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              31
  REGIONAL LYMPH NODE                                                                                   98
D47V4, binary
                 cls
clus               0  1
  PHGDH MUTATED    0  7
  PHGDH WILD-TYPE 60 92
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PHGDH MUTATED      0    7
  PHGDH WILD-TYPE   60   92
        clus
vv       PHGDH MUTATED PHGDH WILD-TYPE
  FEMALE             0              60
  MALE               7              92
                 vv
clus               M0  M1 M1A M1B M1C
  PHGDH MUTATED     5   0   0   0   0
  PHGDH WILD-TYPE 133   2   1   2   2
D47V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2A N2B N2C N3 NX
  PHGDH MUTATED    4  0   0   1   0   0   0  0  0
  PHGDH WILD-TYPE 83  2   7  14   4  10   5 14  2
D47V6, multiclass
D47V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  PHGDH MUTATED             0       0        0        0        0         1
  PHGDH WILD-TYPE           3      17       10       12       18         6
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  PHGDH MUTATED           2         0         0          0          0
  PHGDH WILD-TYPE         7         7         7          6         17
                 vv
clus              STAGE IIIC STAGE IV
  PHGDH MUTATED            1        0
  PHGDH WILD-TYPE         20        5
D47V8, multiclass

Clustering(48) Variable = STXBP5L MUTATION ANALYSIS
D48V1, survival
                   sevent
clus2                0  1
  STXBP5L MUTATED   14 18
  STXBP5L WILD-TYPE 59 67
  STXBP5L MUTATED STXBP5L WILD-TYPE 
               32               126 
  STXBP5L MUTATED STXBP5L WILD-TYPE 
               18                67 
$`STXBP5L MUTATED`
TCGA-D3-A2JF TCGA-D3-A3MV TCGA-DA-A1HV TCGA-DA-A1IC TCGA-DA-A3F8 TCGA-EE-A181 
       48.76        21.47        48.89        68.09        15.68        33.73 
TCGA-EE-A20F TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29R TCGA-EE-A29S 
       78.87        13.97        32.19        44.35        14.47        55.89 
TCGA-EE-A2GP TCGA-EE-A2M5 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2MI TCGA-EE-A2MJ 
       13.87        21.67        61.51        47.28       204.62        96.23 
TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A3AA TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH 
      103.56       136.44         4.24        13.81        23.47       138.77 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A1A1 TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1ZK 
       12.59        26.37        79.99       202.62        20.91        23.93 
TCGA-FS-A1ZZ TCGA-GN-A266 
       27.02        10.09 

$`STXBP5L WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       43.40        65.49        23.77        11.87        12.10        58.03 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D9-A148 TCGA-D9-A149 
       71.24        60.23        24.53         9.30       148.31        49.74 
TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.70         6.38        36.03       117.17        20.38       194.83 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
      176.55        35.93       107.34        61.18        53.92        65.92 
TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A17X TCGA-EE-A17Z 
       23.44        28.60        10.49       215.44        29.82         8.65 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20H TCGA-EE-A29A 
       14.70        26.86         4.93       109.64       168.26        63.32 
TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       47.84        39.62         2.56        18.58        56.42        37.35 
TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
      345.96        25.87        17.92        46.82        78.94        24.43 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE 
       39.25        58.75        47.54        43.23       314.53       135.91 
TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM 
      182.01        22.55        89.33        54.71        55.00        75.48 
TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU 
       90.94       101.95        14.30        55.59        19.56        67.13 
TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH 
      129.24        28.80        19.76       103.27       103.17        16.96 
TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ 
      144.76       203.01       167.87        47.54       248.61        43.23 
TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE 
       41.59        53.26       122.73        25.84         3.68        26.73 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX 
        6.41       131.08        44.05        80.32       216.92        48.59 
TCGA-FS-A1YY TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC 
      228.59        28.08         7.76        27.68        48.85       357.37 
TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ 
       53.52        40.27        15.45         9.70        32.71        47.38 
TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT 
      101.26        74.73       133.55        11.41       148.77        53.16 
TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 
       26.56        49.48        27.06         0.20        76.41       120.46 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
      117.93        84.72        64.41        62.76        32.48        39.58 

  STXBP5L MUTATED STXBP5L WILD-TYPE 
             4.24              0.20 
  STXBP5L MUTATED STXBP5L WILD-TYPE 
           204.62            357.37 
  STXBP5L MUTATED STXBP5L WILD-TYPE 
            32.96             48.72 
[1] "4.2 - 204.6 (33.0)" "0.2 - 357.4 (48.7)"
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED"   "STXBP5L MUTATED" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED"   "STXBP5L MUTATED" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED"   "STXBP5L MUTATED" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
  "STXBP5L MUTATED"   "STXBP5L MUTATED"   "STXBP5L MUTATED"   "STXBP5L MUTATED" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
  "STXBP5L MUTATED"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED"   "STXBP5L MUTATED" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED"   "STXBP5L MUTATED" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED"   "STXBP5L MUTATED" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
  "STXBP5L MUTATED"   "STXBP5L MUTATED"   "STXBP5L MUTATED"   "STXBP5L MUTATED" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
  "STXBP5L MUTATED"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED"   "STXBP5L MUTATED" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED"   "STXBP5L MUTATED" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED"   "STXBP5L MUTATED" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
  "STXBP5L MUTATED"   "STXBP5L MUTATED"   "STXBP5L MUTATED"   "STXBP5L MUTATED" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
  "STXBP5L MUTATED"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
[1] "hr=" "1.3"
D48V2, continuous
                   vv
clus                DISTANT METASTASIS PRIMARY TUMOR
  STXBP5L MUTATED                    5             1
  STXBP5L WILD-TYPE                 17             0
                   vv
clus                REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  STXBP5L MUTATED                                                                                          6
  STXBP5L WILD-TYPE                                                                                       26
                   vv
clus                REGIONAL LYMPH NODE
  STXBP5L MUTATED                    20
  STXBP5L WILD-TYPE                  84
D48V3, multiclass
                                                                                          clus
vv                                                                                         STXBP5L MUTATED
  DISTANT METASTASIS                                                                                     5
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               6
  REGIONAL LYMPH NODE                                                                                   20
                                                                                          clus
vv                                                                                         STXBP5L WILD-TYPE
  DISTANT METASTASIS                                                                                      17
  PRIMARY TUMOR                                                                                            0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                26
  REGIONAL LYMPH NODE                                                                                     84
D48V4, binary
                   cls
clus                 0  1
  STXBP5L MUTATED   11 21
  STXBP5L WILD-TYPE 49 78
[1] "tbl2"
                   cls
clus                [,1] [,2]
  STXBP5L MUTATED     11   21
  STXBP5L WILD-TYPE   49   78
        clus
vv       STXBP5L MUTATED STXBP5L WILD-TYPE
  FEMALE              11                49
  MALE                21                78
                   vv
clus                 M0  M1 M1A M1B M1C
  STXBP5L MUTATED    27   0   0   0   0
  STXBP5L WILD-TYPE 111   2   1   2   2
D48V5, multiclass
                   vv
clus                N0 N1 N1A N1B N2A N2B N2C N3 NX
  STXBP5L MUTATED   19  0   1   2   1   2   1  1  0
  STXBP5L WILD-TYPE 68  2   6  13   3   8   4 13  2
D48V6, multiclass
D48V7, continuous
                   vv
clus                I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  STXBP5L MUTATED             0       3        3        2        7         1
  STXBP5L WILD-TYPE           3      14        7       10       11         6
                   vv
clus                STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  STXBP5L MUTATED           2         0         0          0          5
  STXBP5L WILD-TYPE         7         7         7          6         12
                   vv
clus                STAGE IIIC STAGE IV
  STXBP5L MUTATED            3        0
  STXBP5L WILD-TYPE         18        5
D48V8, multiclass

Clustering(49) Variable = TRAT1 MUTATION ANALYSIS
D49V1, survival
                 sevent
clus2              0  1
  TRAT1 MUTATED    3  7
  TRAT1 WILD-TYPE 70 78
  TRAT1 MUTATED TRAT1 WILD-TYPE 
             10             148 
  TRAT1 MUTATED TRAT1 WILD-TYPE 
              7              78 
$`TRAT1 MUTATED`
TCGA-DA-A1IC TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A29M TCGA-EE-A2MT TCGA-EE-A3AE 
       68.09        33.73        26.86        44.35        41.59        26.73 
TCGA-ER-A19F TCGA-FS-A1ZZ TCGA-GN-A266 TCGA-GN-A26A 
       26.37        27.02        10.09        32.48 

$`TRAT1 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW 
      148.31        49.74         2.70         6.38        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F3 
       61.18        53.92        65.92        23.44        28.60        10.49 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A185 
      215.44        15.68        29.82         8.65        14.70         4.93 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
      109.64        78.87       168.26        63.32        47.84        13.97 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       39.62        32.19         2.56        18.58        56.42        37.35 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
       14.47        55.89       345.96        25.87        17.92        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC 
       78.94        24.43        39.25        58.75        47.54        43.23 
TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK 
      314.53       135.91       182.01        22.55        89.33        54.71 
TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR 
       55.00        75.48        90.94       101.95        13.87        14.30 
TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 
       55.59        19.56        67.13        21.67       129.24        28.80 
TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH 
       19.76        61.51        47.28       103.27       103.17        16.96 
TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN 
      204.62        96.23       144.76       203.01       167.87        47.54 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MU TCGA-EE-A3AA 
      248.61        43.23       103.56       136.44        53.26         4.24 
TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH 
      122.73        25.84         3.68        13.81        23.47       138.77 
TCGA-ER-A19D TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
       12.59         6.41       131.08        44.05        79.99        80.32 
TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 
      216.92        48.59       228.59       202.62        20.91        28.08 
TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE 
        7.76        27.68        48.85       357.37        53.52        40.27 
TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM 
       15.45         9.70        32.71        47.38        23.93       101.26 
TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU 
       74.73       133.55        11.41       148.77        53.16        26.56 
TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
       49.48        27.06         0.20        76.41       120.46       117.93 
TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26D 
       84.72        64.41        62.76        39.58 

  TRAT1 MUTATED TRAT1 WILD-TYPE 
          10.09            0.20 
  TRAT1 MUTATED TRAT1 WILD-TYPE 
          68.09          357.37 
  TRAT1 MUTATED TRAT1 WILD-TYPE 
         29.750          48.805 
[1] "10.1 - 68.1 (29.8)" "0.2 - 357.4 (48.8)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" "TRAT1 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"TRAT1 WILD-TYPE"   "TRAT1 MUTATED" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" "TRAT1 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
  "TRAT1 MUTATED" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" "TRAT1 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"TRAT1 WILD-TYPE"   "TRAT1 MUTATED" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
  "TRAT1 MUTATED" "TRAT1 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" "TRAT1 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"TRAT1 WILD-TYPE"   "TRAT1 MUTATED" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" "TRAT1 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
  "TRAT1 MUTATED" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" "TRAT1 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"TRAT1 WILD-TYPE"   "TRAT1 MUTATED" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
  "TRAT1 MUTATED" "TRAT1 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" "TRAT1 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"TRAT1 WILD-TYPE"   "TRAT1 MUTATED" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" "TRAT1 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
  "TRAT1 MUTATED" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" "TRAT1 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"TRAT1 WILD-TYPE"   "TRAT1 MUTATED" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
  "TRAT1 MUTATED" "TRAT1 WILD-TYPE" 
[1] "hr=" "2.4"
D49V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  TRAT1 MUTATED                    1             1
  TRAT1 WILD-TYPE                 21             0
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  TRAT1 MUTATED                                                                                          3
  TRAT1 WILD-TYPE                                                                                       29
                 vv
clus              REGIONAL LYMPH NODE
  TRAT1 MUTATED                     5
  TRAT1 WILD-TYPE                  99
D49V3, multiclass
                                                                                          clus
vv                                                                                         TRAT1 MUTATED
  DISTANT METASTASIS                                                                                   1
  PRIMARY TUMOR                                                                                        1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             3
  REGIONAL LYMPH NODE                                                                                  5
                                                                                          clus
vv                                                                                         TRAT1 WILD-TYPE
  DISTANT METASTASIS                                                                                    21
  PRIMARY TUMOR                                                                                          0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              29
  REGIONAL LYMPH NODE                                                                                   99
D49V4, binary
                 cls
clus               0  1
  TRAT1 MUTATED    5  5
  TRAT1 WILD-TYPE 55 94
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRAT1 MUTATED      5    5
  TRAT1 WILD-TYPE   55   94
        clus
vv       TRAT1 MUTATED TRAT1 WILD-TYPE
  FEMALE             5              55
  MALE               5              94
                 vv
clus               M0  M1 M1A M1B M1C
  TRAT1 MUTATED     9   0   0   0   0
  TRAT1 WILD-TYPE 129   2   1   2   2
D49V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2A N2B N2C N3 NX
  TRAT1 MUTATED    7  0   1   0   0   0   1  0  0
  TRAT1 WILD-TYPE 80  2   6  15   4  10   4 14  2
D49V6, multiclass
D49V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  TRAT1 MUTATED             0       1        1        2        1         0
  TRAT1 WILD-TYPE           3      16        9       10       17         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  TRAT1 MUTATED           1         0         0          1          1
  TRAT1 WILD-TYPE         8         7         7          5         16
                 vv
clus              STAGE IIIC STAGE IV
  TRAT1 MUTATED            0        0
  TRAT1 WILD-TYPE         21        5
D49V8, multiclass

Clustering(50) Variable = ZNF844 MUTATION ANALYSIS
D50V1, survival
                  sevent
clus2               0  1
  ZNF844 MUTATED    3  1
  ZNF844 WILD-TYPE 70 84
  ZNF844 MUTATED ZNF844 WILD-TYPE 
               4              154 
  ZNF844 MUTATED ZNF844 WILD-TYPE 
               1               84 
$`ZNF844 MUTATED`
TCGA-DA-A1HV TCGA-EE-A29V TCGA-EE-A2MS TCGA-ER-A3ET 
       48.89        25.87       136.44        80.32 

$`ZNF844 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HW TCGA-DA-A1HY 
      148.31        49.74         2.70         6.38        36.03       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
       20.38       194.83       176.55        35.93       107.34        61.18 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       53.92        65.92        23.44        68.09        28.60        10.49 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 
      215.44        15.68        29.82         8.65        33.73        14.70 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A 
       26.86         4.93       109.64        78.87       168.26        63.32 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M 
       47.84        13.97        39.62        32.19         2.56        44.35 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T 
       18.58        56.42        37.35        14.47        55.89       345.96 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
       17.92        46.82        78.94        24.43        39.25        58.75 
TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI 
       47.54        43.23       314.53       135.91       182.01        22.55 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO 
       89.33        54.71        55.00        75.48        90.94       101.95 
TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 
       13.87        14.30        55.59        19.56        67.13        21.67 
TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME 
      129.24        28.80        19.76        61.51        47.28       103.27 
TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML 
      103.17        16.96       204.62        96.23       144.76       203.01 
TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MT 
      167.87        47.54       248.61        43.23       103.56        41.59 
TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE 
       53.26         4.24       122.73        25.84         3.68        26.73 
TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       13.81        23.47       138.77        12.59        26.37         6.41 
TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY 
      131.08        44.05        79.99       216.92        48.59       228.59 
TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB 
      202.62        20.91        28.08         7.76        27.68        48.85 
TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH 
      357.37        53.52        40.27        15.45         9.70        32.71 
TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR 
       47.38        23.93       101.26        74.73       133.55        11.41 
TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ 
      148.77        53.16        26.56        49.48        27.06        27.02 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        0.20        76.41       120.46       117.93        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       64.41        62.76        32.48        39.58 

  ZNF844 MUTATED ZNF844 WILD-TYPE 
           25.87             0.20 
  ZNF844 MUTATED ZNF844 WILD-TYPE 
          136.44           357.37 
  ZNF844 MUTATED ZNF844 WILD-TYPE 
          64.605           47.460 
[1] "25.9 - 136.4 (64.6)" "0.2 - 357.4 (47.5)" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE"   "ZNF844 MUTATED" "ZNF844 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"ZNF844 WILD-TYPE"   "ZNF844 MUTATED" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE"   "ZNF844 MUTATED" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
  "ZNF844 MUTATED" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE"   "ZNF844 MUTATED" "ZNF844 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"ZNF844 WILD-TYPE"   "ZNF844 MUTATED" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE"   "ZNF844 MUTATED" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
  "ZNF844 MUTATED" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE"   "ZNF844 MUTATED" "ZNF844 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"ZNF844 WILD-TYPE"   "ZNF844 MUTATED" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE"   "ZNF844 MUTATED" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
  "ZNF844 MUTATED" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"ZNF844 WILD-TYPE" "ZNF844 WILD-TYPE" 
[1] "hr=" "2.5"
D50V2, continuous
                  vv
clus               DISTANT METASTASIS PRIMARY TUMOR
  ZNF844 MUTATED                    1             0
  ZNF844 WILD-TYPE                 21             1
                  vv
clus               REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  ZNF844 MUTATED                                                                                          1
  ZNF844 WILD-TYPE                                                                                       31
                  vv
clus               REGIONAL LYMPH NODE
  ZNF844 MUTATED                     2
  ZNF844 WILD-TYPE                 102
D50V3, multiclass
                                                                                          clus
vv                                                                                         ZNF844 MUTATED
  DISTANT METASTASIS                                                                                    1
  PRIMARY TUMOR                                                                                         0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              1
  REGIONAL LYMPH NODE                                                                                   2
                                                                                          clus
vv                                                                                         ZNF844 WILD-TYPE
  DISTANT METASTASIS                                                                                     21
  PRIMARY TUMOR                                                                                           1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               31
  REGIONAL LYMPH NODE                                                                                   102
D50V4, binary
                  cls
clus                0  1
  ZNF844 MUTATED    2  2
  ZNF844 WILD-TYPE 58 97
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF844 MUTATED      2    2
  ZNF844 WILD-TYPE   58   97
        clus
vv       ZNF844 MUTATED ZNF844 WILD-TYPE
  FEMALE              2               58
  MALE                2               97
                  vv
clus                M0  M1 M1A M1B M1C
  ZNF844 MUTATED     4   0   0   0   0
  ZNF844 WILD-TYPE 134   2   1   2   2
D50V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2A N2B N2C N3 NX
  ZNF844 MUTATED    1  0   1   1   0   1   0  0  0
  ZNF844 WILD-TYPE 86  2   6  14   4   9   5 14  2
D50V6, multiclass
D50V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  ZNF844 MUTATED             0       0        0        0        1         0
  ZNF844 WILD-TYPE           3      17       10       12       17         7
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  ZNF844 MUTATED           0         0         0          1          1
  ZNF844 WILD-TYPE         9         7         7          5         16
                  vv
clus               STAGE IIIC STAGE IV
  ZNF844 MUTATED            1        0
  ZNF844 WILD-TYPE         20        5
D50V8, multiclass

Clustering(51) Variable = TTN MUTATION ANALYSIS
D51V1, survival
               sevent
clus2            0  1
  TTN MUTATED   61 61
  TTN WILD-TYPE 12 24
  TTN MUTATED TTN WILD-TYPE 
          122            36 
  TTN MUTATED TTN WILD-TYPE 
           61            24 
$`TTN MUTATED`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q8 TCGA-D3-A2J8 TCGA-D3-A2JD 
       16.57       112.54        71.80        28.08        65.49        11.87 
TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3CE TCGA-D3-A3MV TCGA-D9-A149 TCGA-D9-A1JW 
       48.76        12.10        60.23        21.47        49.74         2.70 
TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        6.38        48.89        36.03       117.17        20.38       194.83 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IC 
       35.93       107.34        61.18        53.92        65.92        68.09 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
      215.44        15.68        29.82        33.73        14.70        26.86 
TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
        4.93        78.87       168.26        63.32        47.84        13.97 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
       39.62        32.19         2.56        44.35        18.58        56.42 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A2A0 TCGA-EE-A2A1 
       37.35        14.47        55.89        25.87        46.82        78.94 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD 
       24.43        39.25        58.75        47.54        43.23       314.53 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GM 
      135.91       182.01        22.55        89.33        54.71        75.48 
TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT 
       90.94       101.95        13.87        14.30        55.59        19.56 
TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC 
       67.13        21.67       129.24        28.80        19.76        61.51 
TCGA-EE-A2MD TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK 
       47.28       103.17        16.96       204.62        96.23       144.76 
TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR 
      203.01       167.87        47.54       248.61        43.23       103.56 
TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC 
      136.44        41.59        53.26         4.24       122.73        25.84 
TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F 
       26.73        13.81        23.47       138.77        12.59        26.37 
TCGA-ER-A19J TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z7 
        6.41        44.05        79.99       202.62        20.91         7.76 
TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZK 
       27.68        48.85       357.37        40.27        15.45        23.93 
TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZW 
      101.26        74.73       133.55        11.41       148.77        49.48 
TCGA-FS-A1ZZ TCGA-GN-A262 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 
       27.02       120.46        84.72        10.09        64.41        62.76 
TCGA-GN-A26A TCGA-GN-A26D 
       32.48        39.58 

$`TTN WILD-TYPE`
TCGA-D3-A1Q7 TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A2J9 TCGA-D3-A3C6 TCGA-D3-A3CC 
      121.22        31.59        43.40        23.77        58.03        71.24 
TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D9-A148 TCGA-DA-A1I2 TCGA-DA-A1IB TCGA-DA-A3F2 
       24.53         9.30       148.31       176.55        23.44        28.60 
TCGA-DA-A3F3 TCGA-EE-A17Z TCGA-EE-A20B TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2GL 
       10.49         8.65       109.64       345.96        17.92        55.00 
TCGA-EE-A2ME TCGA-EE-A3AD TCGA-ER-A19L TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX 
      103.27         3.68       131.08        80.32       216.92        48.59 
TCGA-FS-A1YY TCGA-FS-A1Z4 TCGA-FS-A1ZD TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ 
      228.59        28.08        53.52         9.70        32.71        47.38 
TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZY TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A264 
       53.16        26.56        27.06         0.20        76.41       117.93 

  TTN MUTATED TTN WILD-TYPE 
         2.56          0.20 
  TTN MUTATED TTN WILD-TYPE 
       357.37        345.96 
  TTN MUTATED TTN WILD-TYPE 
       47.540        47.985 
[1] "2.6 - 357.4 (47.5)" "0.2 - 346.0 (48.0)"
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A148    TCGA-D9-A149 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-D9-A1JW    TCGA-D9-A1JX    TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-DA-A1I0    TCGA-DA-A1I1    TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-DA-A1I7    TCGA-DA-A1I8    TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-DA-A3F2    TCGA-DA-A3F3    TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A17Z    TCGA-EE-A181    TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A20B    TCGA-EE-A20F    TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A29D    TCGA-EE-A29E    TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A29N    TCGA-EE-A29P    TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A29T    TCGA-EE-A29V    TCGA-EE-A29X    TCGA-EE-A2A0    TCGA-EE-A2A1 
"TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6    TCGA-EE-A2GB    TCGA-EE-A2GC 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A2GD    TCGA-EE-A2GE    TCGA-EE-A2GH    TCGA-EE-A2GI    TCGA-EE-A2GJ 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A2GK    TCGA-EE-A2GL    TCGA-EE-A2GM    TCGA-EE-A2GN    TCGA-EE-A2GO 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A2GP    TCGA-EE-A2GR    TCGA-EE-A2GS    TCGA-EE-A2GT    TCGA-EE-A2GU 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A2M5    TCGA-EE-A2M6    TCGA-EE-A2M7    TCGA-EE-A2M8    TCGA-EE-A2MC 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A2MD    TCGA-EE-A2ME    TCGA-EE-A2MG    TCGA-EE-A2MH    TCGA-EE-A2MI 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A2MJ    TCGA-EE-A2MK    TCGA-EE-A2ML    TCGA-EE-A2MM    TCGA-EE-A2MN 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A2MP    TCGA-EE-A2MQ    TCGA-EE-A2MR    TCGA-EE-A2MS    TCGA-EE-A2MT 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A2MU    TCGA-EE-A3AA    TCGA-EE-A3AB    TCGA-EE-A3AC    TCGA-EE-A3AD 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-EE-A3AE    TCGA-EE-A3AF    TCGA-EE-A3AG    TCGA-EE-A3AH    TCGA-ER-A19D 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19N    TCGA-ER-A1A1 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-ER-A3ET    TCGA-FS-A1YW    TCGA-FS-A1YX    TCGA-FS-A1YY    TCGA-FS-A1Z0 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-FS-A1Z3    TCGA-FS-A1Z4    TCGA-FS-A1Z7    TCGA-FS-A1ZA    TCGA-FS-A1ZB 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-FS-A1ZC    TCGA-FS-A1ZD    TCGA-FS-A1ZE    TCGA-FS-A1ZF    TCGA-FS-A1ZG 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-FS-A1ZH    TCGA-FS-A1ZJ    TCGA-FS-A1ZK    TCGA-FS-A1ZM    TCGA-FS-A1ZP 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-FS-A1ZQ    TCGA-FS-A1ZR    TCGA-FS-A1ZS    TCGA-FS-A1ZT    TCGA-FS-A1ZU 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-FS-A1ZW    TCGA-FS-A1ZY    TCGA-FS-A1ZZ    TCGA-FW-A3I3    TCGA-GN-A261 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265    TCGA-GN-A266    TCGA-GN-A267 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A148    TCGA-D9-A149 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-D9-A1JW    TCGA-D9-A1JX    TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-DA-A1I0    TCGA-DA-A1I1    TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-DA-A1I7    TCGA-DA-A1I8    TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-DA-A3F2    TCGA-DA-A3F3    TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A17Z    TCGA-EE-A181    TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A20B    TCGA-EE-A20F    TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A29D    TCGA-EE-A29E    TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A29N    TCGA-EE-A29P    TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A29T    TCGA-EE-A29V    TCGA-EE-A29X    TCGA-EE-A2A0    TCGA-EE-A2A1 
"TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6    TCGA-EE-A2GB    TCGA-EE-A2GC 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A2GD    TCGA-EE-A2GE    TCGA-EE-A2GH    TCGA-EE-A2GI    TCGA-EE-A2GJ 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A2GK    TCGA-EE-A2GL    TCGA-EE-A2GM    TCGA-EE-A2GN    TCGA-EE-A2GO 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A2GP    TCGA-EE-A2GR    TCGA-EE-A2GS    TCGA-EE-A2GT    TCGA-EE-A2GU 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A2M5    TCGA-EE-A2M6    TCGA-EE-A2M7    TCGA-EE-A2M8    TCGA-EE-A2MC 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A2MD    TCGA-EE-A2ME    TCGA-EE-A2MG    TCGA-EE-A2MH    TCGA-EE-A2MI 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A2MJ    TCGA-EE-A2MK    TCGA-EE-A2ML    TCGA-EE-A2MM    TCGA-EE-A2MN 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A2MP    TCGA-EE-A2MQ    TCGA-EE-A2MR    TCGA-EE-A2MS    TCGA-EE-A2MT 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A2MU    TCGA-EE-A3AA    TCGA-EE-A3AB    TCGA-EE-A3AC    TCGA-EE-A3AD 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-EE-A3AE    TCGA-EE-A3AF    TCGA-EE-A3AG    TCGA-EE-A3AH    TCGA-ER-A19D 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19N    TCGA-ER-A1A1 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-ER-A3ET    TCGA-FS-A1YW    TCGA-FS-A1YX    TCGA-FS-A1YY    TCGA-FS-A1Z0 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-FS-A1Z3    TCGA-FS-A1Z4    TCGA-FS-A1Z7    TCGA-FS-A1ZA    TCGA-FS-A1ZB 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-FS-A1ZC    TCGA-FS-A1ZD    TCGA-FS-A1ZE    TCGA-FS-A1ZF    TCGA-FS-A1ZG 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-FS-A1ZH    TCGA-FS-A1ZJ    TCGA-FS-A1ZK    TCGA-FS-A1ZM    TCGA-FS-A1ZP 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-FS-A1ZQ    TCGA-FS-A1ZR    TCGA-FS-A1ZS    TCGA-FS-A1ZT    TCGA-FS-A1ZU 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-FS-A1ZW    TCGA-FS-A1ZY    TCGA-FS-A1ZZ    TCGA-FW-A3I3    TCGA-GN-A261 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265    TCGA-GN-A266    TCGA-GN-A267 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A148    TCGA-D9-A149 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-D9-A1JW    TCGA-D9-A1JX    TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-DA-A1I0    TCGA-DA-A1I1    TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-DA-A1I7    TCGA-DA-A1I8    TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-DA-A3F2    TCGA-DA-A3F3    TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A17Z    TCGA-EE-A181    TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A20B    TCGA-EE-A20F    TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A29D    TCGA-EE-A29E    TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A29N    TCGA-EE-A29P    TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A29T    TCGA-EE-A29V    TCGA-EE-A29X    TCGA-EE-A2A0    TCGA-EE-A2A1 
"TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6    TCGA-EE-A2GB    TCGA-EE-A2GC 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A2GD    TCGA-EE-A2GE    TCGA-EE-A2GH    TCGA-EE-A2GI    TCGA-EE-A2GJ 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A2GK    TCGA-EE-A2GL    TCGA-EE-A2GM    TCGA-EE-A2GN    TCGA-EE-A2GO 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A2GP    TCGA-EE-A2GR    TCGA-EE-A2GS    TCGA-EE-A2GT    TCGA-EE-A2GU 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A2M5    TCGA-EE-A2M6    TCGA-EE-A2M7    TCGA-EE-A2M8    TCGA-EE-A2MC 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A2MD    TCGA-EE-A2ME    TCGA-EE-A2MG    TCGA-EE-A2MH    TCGA-EE-A2MI 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A2MJ    TCGA-EE-A2MK    TCGA-EE-A2ML    TCGA-EE-A2MM    TCGA-EE-A2MN 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A2MP    TCGA-EE-A2MQ    TCGA-EE-A2MR    TCGA-EE-A2MS    TCGA-EE-A2MT 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-EE-A2MU    TCGA-EE-A3AA    TCGA-EE-A3AB    TCGA-EE-A3AC    TCGA-EE-A3AD 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-EE-A3AE    TCGA-EE-A3AF    TCGA-EE-A3AG    TCGA-EE-A3AH    TCGA-ER-A19D 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19N    TCGA-ER-A1A1 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-ER-A3ET    TCGA-FS-A1YW    TCGA-FS-A1YX    TCGA-FS-A1YY    TCGA-FS-A1Z0 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-FS-A1Z3    TCGA-FS-A1Z4    TCGA-FS-A1Z7    TCGA-FS-A1ZA    TCGA-FS-A1ZB 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-FS-A1ZC    TCGA-FS-A1ZD    TCGA-FS-A1ZE    TCGA-FS-A1ZF    TCGA-FS-A1ZG 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-FS-A1ZH    TCGA-FS-A1ZJ    TCGA-FS-A1ZK    TCGA-FS-A1ZM    TCGA-FS-A1ZP 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-FS-A1ZQ    TCGA-FS-A1ZR    TCGA-FS-A1ZS    TCGA-FS-A1ZT    TCGA-FS-A1ZU 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-FS-A1ZW    TCGA-FS-A1ZY    TCGA-FS-A1ZZ    TCGA-FW-A3I3    TCGA-GN-A261 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265    TCGA-GN-A266    TCGA-GN-A267 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
[1] "hr=" "1.3"
D51V2, continuous
               vv
clus            DISTANT METASTASIS PRIMARY TUMOR
  TTN MUTATED                   17             1
  TTN WILD-TYPE                  5             0
               vv
clus            REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  TTN MUTATED                                                                                         25
  TTN WILD-TYPE                                                                                        7
               vv
clus            REGIONAL LYMPH NODE
  TTN MUTATED                    80
  TTN WILD-TYPE                  24
D51V3, multiclass
                                                                                          clus
vv                                                                                         TTN MUTATED
  DISTANT METASTASIS                                                                                17
  PRIMARY TUMOR                                                                                      1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)          25
  REGIONAL LYMPH NODE                                                                               80
                                                                                          clus
vv                                                                                         TTN WILD-TYPE
  DISTANT METASTASIS                                                                                   5
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             7
  REGIONAL LYMPH NODE                                                                                 24
D51V4, binary
               cls
clus             0  1
  TTN MUTATED   42 81
  TTN WILD-TYPE 18 18
[1] "tbl2"
               cls
clus            [,1] [,2]
  TTN MUTATED     42   81
  TTN WILD-TYPE   18   18
        clus
vv       TTN MUTATED TTN WILD-TYPE
  FEMALE          42            18
  MALE            81            18
               vv
clus             M0  M1 M1A M1B M1C
  TTN MUTATED   108   1   1   1   1
  TTN WILD-TYPE  30   1   0   1   1
D51V5, multiclass
               vv
clus            N0 N1 N1A N1B N2A N2B N2C N3 NX
  TTN MUTATED   69  1   6  14   3   5   3 11  1
  TTN WILD-TYPE 18  1   1   1   1   5   2  3  1
D51V6, multiclass
D51V7, continuous
               vv
clus            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  TTN MUTATED             3      13       10        8       17         4
  TTN WILD-TYPE           0       4        0        4        1         3
               vv
clus            STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  TTN MUTATED           6         5         4          5         14         16
  TTN WILD-TYPE         3         2         3          1          3          5
               vv
clus            STAGE IV
  TTN MUTATED          3
  TTN WILD-TYPE        2
D51V8, multiclass

Clustering(52) Variable = COPG2 MUTATION ANALYSIS
D52V1, survival
                 sevent
clus2              0  1
  COPG2 MUTATED    2  1
  COPG2 WILD-TYPE 71 84
  COPG2 MUTATED COPG2 WILD-TYPE 
              3             155 
  COPG2 MUTATED COPG2 WILD-TYPE 
              1              84 
$`COPG2 MUTATED`
TCGA-D3-A2J6 TCGA-EE-A29Q TCGA-EE-A2GH 
       43.40        37.35       182.01 

$`COPG2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 
       65.49        23.77        11.87        48.76        12.10        58.03 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
       71.24        60.23        24.53         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
       49.74         2.70         6.38        48.89        36.03       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
       20.38       194.83       176.55        35.93       107.34        61.18 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       53.92        65.92        23.44        68.09        28.60        10.49 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 
      215.44        15.68        29.82         8.65        33.73        14.70 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A 
       26.86         4.93       109.64        78.87       168.26        63.32 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M 
       47.84        13.97        39.62        32.19         2.56        44.35 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V 
       18.58        56.42        14.47        55.89       345.96        25.87 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
       17.92        46.82        78.94        24.43        39.25        58.75 
TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GI TCGA-EE-A2GJ 
       47.54        43.23       314.53       135.91        22.55        89.33 
TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP 
       54.71        55.00        75.48        90.94       101.95        13.87 
TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 
       14.30        55.59        19.56        67.13        21.67       129.24 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG 
       28.80        19.76        61.51        47.28       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM 
       16.96       204.62        96.23       144.76       203.01       167.87 
TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT 
       47.54       248.61        43.23       103.56       136.44        41.59 
TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE 
       53.26         4.24       122.73        25.84         3.68        26.73 
TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       13.81        23.47       138.77        12.59        26.37         6.41 
TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX 
      131.08        44.05        79.99        80.32       216.92        48.59 
TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA 
      228.59       202.62        20.91        28.08         7.76        27.68 
TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG 
       48.85       357.37        53.52        40.27        15.45         9.70 
TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ 
       32.71        47.38        23.93       101.26        74.73       133.55 
TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY 
       11.41       148.77        53.16        26.56        49.48        27.06 
TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
       27.02         0.20        76.41       120.46       117.93        84.72 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       10.09        64.41        62.76        32.48        39.58 

  COPG2 MUTATED COPG2 WILD-TYPE 
          37.35            0.20 
  COPG2 MUTATED COPG2 WILD-TYPE 
         182.01          357.37 
  COPG2 MUTATED COPG2 WILD-TYPE 
          43.40           47.54 
[1] "37.4 - 182.0 (43.4)" "0.2 - 357.4 (47.5)" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE"   "COPG2 MUTATED" "COPG2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"COPG2 WILD-TYPE"   "COPG2 MUTATED" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
  "COPG2 MUTATED" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE"   "COPG2 MUTATED" "COPG2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"COPG2 WILD-TYPE"   "COPG2 MUTATED" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
  "COPG2 MUTATED" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE"   "COPG2 MUTATED" "COPG2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"COPG2 WILD-TYPE"   "COPG2 MUTATED" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
  "COPG2 MUTATED" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"COPG2 WILD-TYPE" "COPG2 WILD-TYPE" 
[1] "hr=" "2.1"
D52V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  COPG2 MUTATED                    0             0
  COPG2 WILD-TYPE                 22             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  COPG2 MUTATED                                                                                          1
  COPG2 WILD-TYPE                                                                                       31
                 vv
clus              REGIONAL LYMPH NODE
  COPG2 MUTATED                     2
  COPG2 WILD-TYPE                 102
D52V3, multiclass
                                                                                          clus
vv                                                                                         COPG2 MUTATED
  DISTANT METASTASIS                                                                                   0
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             1
  REGIONAL LYMPH NODE                                                                                  2
                                                                                          clus
vv                                                                                         COPG2 WILD-TYPE
  DISTANT METASTASIS                                                                                    22
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              31
  REGIONAL LYMPH NODE                                                                                  102
D52V4, binary
                 cls
clus               0  1
  COPG2 MUTATED    1  2
  COPG2 WILD-TYPE 59 97
[1] "tbl2"
                 cls
clus              [,1] [,2]
  COPG2 MUTATED      1    2
  COPG2 WILD-TYPE   59   97
        clus
vv       COPG2 MUTATED COPG2 WILD-TYPE
  FEMALE             1              59
  MALE               2              97
                 vv
clus               M0  M1 M1A M1B M1C
  COPG2 MUTATED     3   0   0   0   0
  COPG2 WILD-TYPE 135   2   1   2   2
D52V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2A N2B N2C N3 NX
  COPG2 MUTATED    3  0   0   0   0   0   0  0  0
  COPG2 WILD-TYPE 84  2   7  15   4  10   5 14  2
D52V6, multiclass
D52V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  COPG2 MUTATED             0       1        0        0        0         0
  COPG2 WILD-TYPE           3      16       10       12       18         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  COPG2 MUTATED           2         0         0          0          0
  COPG2 WILD-TYPE         7         7         7          6         17
                 vv
clus              STAGE IIIC STAGE IV
  COPG2 MUTATED            0        0
  COPG2 WILD-TYPE         21        5
D52V8, multiclass

Clustering(53) Variable = DSG3 MUTATION ANALYSIS
D53V1, survival
                sevent
clus2             0  1
  DSG3 MUTATED   15 19
  DSG3 WILD-TYPE 58 66
  DSG3 MUTATED DSG3 WILD-TYPE 
            34            124 
  DSG3 MUTATED DSG3 WILD-TYPE 
            19             66 
$`DSG3 MUTATED`
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I5 
       48.89        36.03       117.17        20.38       176.55       107.34 
TCGA-DA-A1I7 TCGA-DA-A1IC TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A20H 
       61.18        68.09        33.73        14.70        26.86       168.26 
TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29R TCGA-EE-A2A5 TCGA-EE-A2GC TCGA-EE-A2GJ 
       39.62         2.56        14.47        39.25        43.23        89.33 
TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GR TCGA-EE-A2M6 TCGA-EE-A2MC TCGA-EE-A2MI 
       90.94       101.95        14.30       129.24        61.51       204.62 
TCGA-EE-A2MJ TCGA-EE-A2MR TCGA-EE-A3AF TCGA-ER-A19N TCGA-FS-A1Z3 TCGA-FS-A1ZK 
       96.23       103.56        13.81        44.05        20.91        23.93 
TCGA-FS-A1ZQ TCGA-FS-A1ZZ TCGA-GN-A262 TCGA-GN-A266 
      133.55        27.02       120.46        10.09 

$`DSG3 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1I1 TCGA-DA-A1I4 
      148.31        49.74         2.70         6.38       194.83        35.93 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       53.92        65.92        23.44        28.60        10.49       215.44 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F 
       15.68        29.82         8.65         4.93       109.64        78.87 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29N 
       63.32        47.84        13.97        32.19        44.35        18.58 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X 
       56.42        37.35        55.89       345.96        25.87        17.92 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GD 
       46.82        78.94        24.43        58.75        47.54       314.53 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM 
      135.91       182.01        22.55        54.71        55.00        75.48 
TCGA-EE-A2GP TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M7 
       13.87        55.59        19.56        67.13        21.67        28.80 
TCGA-EE-A2M8 TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MK 
       19.76        47.28       103.27       103.17        16.96       144.76 
TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MS 
      203.01       167.87        47.54       248.61        43.23       136.44 
TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD 
       41.59        53.26         4.24       122.73        25.84         3.68 
TCGA-EE-A3AE TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       26.73        23.47       138.77        12.59        26.37         6.41 
TCGA-ER-A19L TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY 
      131.08        79.99        80.32       216.92        48.59       228.59 
TCGA-FS-A1Z0 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC 
      202.62        28.08         7.76        27.68        48.85       357.37 
TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ 
       53.52        40.27        15.45         9.70        32.71        47.38 
TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU 
      101.26        74.73        11.41       148.77        53.16        26.56 
TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A264 TCGA-GN-A265 
       49.48        27.06         0.20        76.41       117.93        84.72 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       64.41        62.76        32.48        39.58 

  DSG3 MUTATED DSG3 WILD-TYPE 
          2.56           0.20 
  DSG3 MUTATED DSG3 WILD-TYPE 
        204.62         357.37 
  DSG3 MUTATED DSG3 WILD-TYPE 
         46.47          47.54 
[1] "2.6 - 204.6 (46.5)" "0.2 - 357.4 (47.5)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED"   "DSG3 MUTATED" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
  "DSG3 MUTATED"   "DSG3 MUTATED" "DSG3 WILD-TYPE"   "DSG3 MUTATED" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"DSG3 WILD-TYPE"   "DSG3 MUTATED"   "DSG3 MUTATED" "DSG3 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"DSG3 WILD-TYPE"   "DSG3 MUTATED"   "DSG3 MUTATED"   "DSG3 MUTATED" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED"   "DSG3 MUTATED" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED"   "DSG3 MUTATED" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
  "DSG3 MUTATED" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED"   "DSG3 MUTATED" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
  "DSG3 MUTATED"   "DSG3 MUTATED" "DSG3 WILD-TYPE"   "DSG3 MUTATED" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"DSG3 WILD-TYPE"   "DSG3 MUTATED"   "DSG3 MUTATED" "DSG3 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"DSG3 WILD-TYPE"   "DSG3 MUTATED"   "DSG3 MUTATED"   "DSG3 MUTATED" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED"   "DSG3 MUTATED" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED"   "DSG3 MUTATED" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
  "DSG3 MUTATED" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED"   "DSG3 MUTATED" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
  "DSG3 MUTATED"   "DSG3 MUTATED" "DSG3 WILD-TYPE"   "DSG3 MUTATED" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"DSG3 WILD-TYPE"   "DSG3 MUTATED"   "DSG3 MUTATED" "DSG3 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"DSG3 WILD-TYPE"   "DSG3 MUTATED"   "DSG3 MUTATED"   "DSG3 MUTATED" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED"   "DSG3 MUTATED" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED"   "DSG3 MUTATED" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
  "DSG3 MUTATED" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"DSG3 WILD-TYPE"   "DSG3 MUTATED" "DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"DSG3 WILD-TYPE" "DSG3 WILD-TYPE" 
[1] "hr=" "1.1"
D53V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  DSG3 MUTATED                    7             0
  DSG3 WILD-TYPE                 15             1
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  DSG3 MUTATED                                                                                          9
  DSG3 WILD-TYPE                                                                                       23
                vv
clus             REGIONAL LYMPH NODE
  DSG3 MUTATED                    18
  DSG3 WILD-TYPE                  86
D53V3, multiclass
                                                                                          clus
vv                                                                                         DSG3 MUTATED
  DISTANT METASTASIS                                                                                  7
  PRIMARY TUMOR                                                                                       0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            9
  REGIONAL LYMPH NODE                                                                                18
                                                                                          clus
vv                                                                                         DSG3 WILD-TYPE
  DISTANT METASTASIS                                                                                   15
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             23
  REGIONAL LYMPH NODE                                                                                  86
D53V4, binary
                cls
clus              0  1
  DSG3 MUTATED   11 23
  DSG3 WILD-TYPE 49 76
[1] "tbl2"
                cls
clus             [,1] [,2]
  DSG3 MUTATED     11   23
  DSG3 WILD-TYPE   49   76
        clus
vv       DSG3 MUTATED DSG3 WILD-TYPE
  FEMALE           11             49
  MALE             23             76
                vv
clus              M0  M1 M1A M1B M1C
  DSG3 MUTATED    27   0   1   0   1
  DSG3 WILD-TYPE 111   2   0   2   1
D53V5, multiclass
                vv
clus             N0 N1 N1A N1B N2A N2B N2C N3 NX
  DSG3 MUTATED   18  0   0   4   0   3   1  3  0
  DSG3 WILD-TYPE 69  2   7  11   4   7   4 11  2
D53V6, multiclass
D53V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DSG3 MUTATED             1       5        1        1        5         1
  DSG3 WILD-TYPE           2      12        9       11       13         6
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DSG3 MUTATED           3         0         0          0          5          6
  DSG3 WILD-TYPE         6         7         7          6         12         15
                vv
clus             STAGE IV
  DSG3 MUTATED          1
  DSG3 WILD-TYPE        4
D53V8, multiclass

Clustering(54) Variable = GML MUTATION ANALYSIS
D54V1, survival
               sevent
clus2            0  1
  GML MUTATED    4  4
  GML WILD-TYPE 69 81
  GML MUTATED GML WILD-TYPE 
            8           150 
  GML MUTATED GML WILD-TYPE 
            4            81 
$`GML MUTATED`
TCGA-D9-A1JW TCGA-DA-A1I7 TCGA-EE-A29D TCGA-EE-A2GJ TCGA-EE-A2MI TCGA-EE-A2MJ 
        2.70        61.18        13.97        89.33       204.62        96.23 
TCGA-EE-A2MT TCGA-FS-A1Z3 
       41.59        20.91 

$`GML WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
      148.31        49.74         6.38        48.89        36.03       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I8 
       20.38       194.83       176.55        35.93       107.34        53.92 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       65.92        23.44        68.09        28.60        10.49       215.44 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
       15.68        29.82         8.65        33.73        14.70        26.86 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.93       109.64        78.87       168.26        63.32        47.84 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
       39.62        32.19         2.56        44.35        18.58        56.42 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X 
       37.35        14.47        55.89       345.96        25.87        17.92 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB 
       46.82        78.94        24.43        39.25        58.75        47.54 
TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GK 
       43.23       314.53       135.91       182.01        22.55        54.71 
TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR 
       55.00        75.48        90.94       101.95        13.87        14.30 
TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 
       55.59        19.56        67.13        21.67       129.24        28.80 
TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH 
       19.76        61.51        47.28       103.27       103.17        16.96 
TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ 
      144.76       203.01       167.87        47.54       248.61        43.23 
TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC 
      103.56       136.44        53.26         4.24       122.73        25.84 
TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D 
        3.68        26.73        13.81        23.47       138.77        12.59 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
       26.37         6.41       131.08        44.05        79.99        80.32 
TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z4 TCGA-FS-A1Z7 
      216.92        48.59       228.59       202.62        28.08         7.76 
TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF 
       27.68        48.85       357.37        53.52        40.27        15.45 
TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP 
        9.70        32.71        47.38        23.93       101.26        74.73 
TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW 
      133.55        11.41       148.77        53.16        26.56        49.48 
TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
       27.06        27.02         0.20        76.41       120.46       117.93 
TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       84.72        10.09        64.41        62.76        32.48        39.58 

  GML MUTATED GML WILD-TYPE 
          2.7           0.2 
  GML MUTATED GML WILD-TYPE 
       204.62        357.37 
  GML MUTATED GML WILD-TYPE 
       51.385        47.540 
[1] "2.7 - 204.6 (51.4)" "0.2 - 357.4 (47.5)"
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A148    TCGA-D9-A149 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-D9-A1JW    TCGA-D9-A1JX    TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY 
  "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-DA-A1I0    TCGA-DA-A1I1    TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-DA-A1I7    TCGA-DA-A1I8    TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC 
  "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-DA-A3F2    TCGA-DA-A3F3    TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A17Z    TCGA-EE-A181    TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A20B    TCGA-EE-A20F    TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A29D    TCGA-EE-A29E    TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M 
  "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A29N    TCGA-EE-A29P    TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A29T    TCGA-EE-A29V    TCGA-EE-A29X    TCGA-EE-A2A0    TCGA-EE-A2A1 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6    TCGA-EE-A2GB    TCGA-EE-A2GC 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A2GD    TCGA-EE-A2GE    TCGA-EE-A2GH    TCGA-EE-A2GI    TCGA-EE-A2GJ 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE"   "GML MUTATED" 
   TCGA-EE-A2GK    TCGA-EE-A2GL    TCGA-EE-A2GM    TCGA-EE-A2GN    TCGA-EE-A2GO 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A2GP    TCGA-EE-A2GR    TCGA-EE-A2GS    TCGA-EE-A2GT    TCGA-EE-A2GU 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A2M5    TCGA-EE-A2M6    TCGA-EE-A2M7    TCGA-EE-A2M8    TCGA-EE-A2MC 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A2MD    TCGA-EE-A2ME    TCGA-EE-A2MG    TCGA-EE-A2MH    TCGA-EE-A2MI 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE"   "GML MUTATED" 
   TCGA-EE-A2MJ    TCGA-EE-A2MK    TCGA-EE-A2ML    TCGA-EE-A2MM    TCGA-EE-A2MN 
  "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A2MP    TCGA-EE-A2MQ    TCGA-EE-A2MR    TCGA-EE-A2MS    TCGA-EE-A2MT 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE"   "GML MUTATED" 
   TCGA-EE-A2MU    TCGA-EE-A3AA    TCGA-EE-A3AB    TCGA-EE-A3AC    TCGA-EE-A3AD 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A3AE    TCGA-EE-A3AF    TCGA-EE-A3AG    TCGA-EE-A3AH    TCGA-ER-A19D 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19N    TCGA-ER-A1A1 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-ER-A3ET    TCGA-FS-A1YW    TCGA-FS-A1YX    TCGA-FS-A1YY    TCGA-FS-A1Z0 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-FS-A1Z3    TCGA-FS-A1Z4    TCGA-FS-A1Z7    TCGA-FS-A1ZA    TCGA-FS-A1ZB 
  "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-FS-A1ZC    TCGA-FS-A1ZD    TCGA-FS-A1ZE    TCGA-FS-A1ZF    TCGA-FS-A1ZG 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-FS-A1ZH    TCGA-FS-A1ZJ    TCGA-FS-A1ZK    TCGA-FS-A1ZM    TCGA-FS-A1ZP 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-FS-A1ZQ    TCGA-FS-A1ZR    TCGA-FS-A1ZS    TCGA-FS-A1ZT    TCGA-FS-A1ZU 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-FS-A1ZW    TCGA-FS-A1ZY    TCGA-FS-A1ZZ    TCGA-FW-A3I3    TCGA-GN-A261 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265    TCGA-GN-A266    TCGA-GN-A267 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A148    TCGA-D9-A149 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-D9-A1JW    TCGA-D9-A1JX    TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY 
  "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-DA-A1I0    TCGA-DA-A1I1    TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-DA-A1I7    TCGA-DA-A1I8    TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC 
  "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-DA-A3F2    TCGA-DA-A3F3    TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A17Z    TCGA-EE-A181    TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A20B    TCGA-EE-A20F    TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A29D    TCGA-EE-A29E    TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M 
  "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A29N    TCGA-EE-A29P    TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A29T    TCGA-EE-A29V    TCGA-EE-A29X    TCGA-EE-A2A0    TCGA-EE-A2A1 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6    TCGA-EE-A2GB    TCGA-EE-A2GC 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A2GD    TCGA-EE-A2GE    TCGA-EE-A2GH    TCGA-EE-A2GI    TCGA-EE-A2GJ 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE"   "GML MUTATED" 
   TCGA-EE-A2GK    TCGA-EE-A2GL    TCGA-EE-A2GM    TCGA-EE-A2GN    TCGA-EE-A2GO 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A2GP    TCGA-EE-A2GR    TCGA-EE-A2GS    TCGA-EE-A2GT    TCGA-EE-A2GU 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A2M5    TCGA-EE-A2M6    TCGA-EE-A2M7    TCGA-EE-A2M8    TCGA-EE-A2MC 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A2MD    TCGA-EE-A2ME    TCGA-EE-A2MG    TCGA-EE-A2MH    TCGA-EE-A2MI 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE"   "GML MUTATED" 
   TCGA-EE-A2MJ    TCGA-EE-A2MK    TCGA-EE-A2ML    TCGA-EE-A2MM    TCGA-EE-A2MN 
  "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A2MP    TCGA-EE-A2MQ    TCGA-EE-A2MR    TCGA-EE-A2MS    TCGA-EE-A2MT 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE"   "GML MUTATED" 
   TCGA-EE-A2MU    TCGA-EE-A3AA    TCGA-EE-A3AB    TCGA-EE-A3AC    TCGA-EE-A3AD 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A3AE    TCGA-EE-A3AF    TCGA-EE-A3AG    TCGA-EE-A3AH    TCGA-ER-A19D 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19N    TCGA-ER-A1A1 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-ER-A3ET    TCGA-FS-A1YW    TCGA-FS-A1YX    TCGA-FS-A1YY    TCGA-FS-A1Z0 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-FS-A1Z3    TCGA-FS-A1Z4    TCGA-FS-A1Z7    TCGA-FS-A1ZA    TCGA-FS-A1ZB 
  "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-FS-A1ZC    TCGA-FS-A1ZD    TCGA-FS-A1ZE    TCGA-FS-A1ZF    TCGA-FS-A1ZG 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-FS-A1ZH    TCGA-FS-A1ZJ    TCGA-FS-A1ZK    TCGA-FS-A1ZM    TCGA-FS-A1ZP 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-FS-A1ZQ    TCGA-FS-A1ZR    TCGA-FS-A1ZS    TCGA-FS-A1ZT    TCGA-FS-A1ZU 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-FS-A1ZW    TCGA-FS-A1ZY    TCGA-FS-A1ZZ    TCGA-FW-A3I3    TCGA-GN-A261 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265    TCGA-GN-A266    TCGA-GN-A267 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A148    TCGA-D9-A149 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-D9-A1JW    TCGA-D9-A1JX    TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY 
  "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-DA-A1I0    TCGA-DA-A1I1    TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-DA-A1I7    TCGA-DA-A1I8    TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC 
  "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-DA-A3F2    TCGA-DA-A3F3    TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A17Z    TCGA-EE-A181    TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A20B    TCGA-EE-A20F    TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A29D    TCGA-EE-A29E    TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M 
  "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A29N    TCGA-EE-A29P    TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A29T    TCGA-EE-A29V    TCGA-EE-A29X    TCGA-EE-A2A0    TCGA-EE-A2A1 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6    TCGA-EE-A2GB    TCGA-EE-A2GC 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A2GD    TCGA-EE-A2GE    TCGA-EE-A2GH    TCGA-EE-A2GI    TCGA-EE-A2GJ 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE"   "GML MUTATED" 
   TCGA-EE-A2GK    TCGA-EE-A2GL    TCGA-EE-A2GM    TCGA-EE-A2GN    TCGA-EE-A2GO 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A2GP    TCGA-EE-A2GR    TCGA-EE-A2GS    TCGA-EE-A2GT    TCGA-EE-A2GU 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A2M5    TCGA-EE-A2M6    TCGA-EE-A2M7    TCGA-EE-A2M8    TCGA-EE-A2MC 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A2MD    TCGA-EE-A2ME    TCGA-EE-A2MG    TCGA-EE-A2MH    TCGA-EE-A2MI 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE"   "GML MUTATED" 
   TCGA-EE-A2MJ    TCGA-EE-A2MK    TCGA-EE-A2ML    TCGA-EE-A2MM    TCGA-EE-A2MN 
  "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A2MP    TCGA-EE-A2MQ    TCGA-EE-A2MR    TCGA-EE-A2MS    TCGA-EE-A2MT 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE"   "GML MUTATED" 
   TCGA-EE-A2MU    TCGA-EE-A3AA    TCGA-EE-A3AB    TCGA-EE-A3AC    TCGA-EE-A3AD 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-EE-A3AE    TCGA-EE-A3AF    TCGA-EE-A3AG    TCGA-EE-A3AH    TCGA-ER-A19D 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19N    TCGA-ER-A1A1 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-ER-A3ET    TCGA-FS-A1YW    TCGA-FS-A1YX    TCGA-FS-A1YY    TCGA-FS-A1Z0 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-FS-A1Z3    TCGA-FS-A1Z4    TCGA-FS-A1Z7    TCGA-FS-A1ZA    TCGA-FS-A1ZB 
  "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-FS-A1ZC    TCGA-FS-A1ZD    TCGA-FS-A1ZE    TCGA-FS-A1ZF    TCGA-FS-A1ZG 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-FS-A1ZH    TCGA-FS-A1ZJ    TCGA-FS-A1ZK    TCGA-FS-A1ZM    TCGA-FS-A1ZP 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-FS-A1ZQ    TCGA-FS-A1ZR    TCGA-FS-A1ZS    TCGA-FS-A1ZT    TCGA-FS-A1ZU 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-FS-A1ZW    TCGA-FS-A1ZY    TCGA-FS-A1ZZ    TCGA-FW-A3I3    TCGA-GN-A261 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265    TCGA-GN-A266    TCGA-GN-A267 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
[1] "hr=" "1.1"
D54V2, continuous
               vv
clus            DISTANT METASTASIS PRIMARY TUMOR
  GML MUTATED                    1             0
  GML WILD-TYPE                 21             1
               vv
clus            REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  GML MUTATED                                                                                          1
  GML WILD-TYPE                                                                                       31
               vv
clus            REGIONAL LYMPH NODE
  GML MUTATED                     6
  GML WILD-TYPE                  98
D54V3, multiclass
                                                                                          clus
vv                                                                                         GML MUTATED
  DISTANT METASTASIS                                                                                 1
  PRIMARY TUMOR                                                                                      0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)           1
  REGIONAL LYMPH NODE                                                                                6
                                                                                          clus
vv                                                                                         GML WILD-TYPE
  DISTANT METASTASIS                                                                                  21
  PRIMARY TUMOR                                                                                        1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            31
  REGIONAL LYMPH NODE                                                                                 98
D54V4, binary
               cls
clus             0  1
  GML MUTATED    1  7
  GML WILD-TYPE 59 92
[1] "tbl2"
               cls
clus            [,1] [,2]
  GML MUTATED      1    7
  GML WILD-TYPE   59   92
        clus
vv       GML MUTATED GML WILD-TYPE
  FEMALE           1            59
  MALE             7            92
               vv
clus             M0  M1 M1A M1B M1C
  GML MUTATED     7   0   0   0   0
  GML WILD-TYPE 131   2   1   2   2
D54V5, multiclass
               vv
clus            N0 N1 N1A N1B N2A N2B N2C N3 NX
  GML MUTATED    4  0   0   1   1   1   0  0  0
  GML WILD-TYPE 83  2   7  14   3   9   5 14  2
D54V6, multiclass
D54V7, continuous
               vv
clus            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  GML MUTATED             0       0        1        1        1         0
  GML WILD-TYPE           3      17        9       11       17         7
               vv
clus            STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  GML MUTATED           1         0         0          0          1          1
  GML WILD-TYPE         8         7         7          6         16         20
               vv
clus            STAGE IV
  GML MUTATED          0
  GML WILD-TYPE        5
D54V8, multiclass

Clustering(55) Variable = HHLA2 MUTATION ANALYSIS
D55V1, survival
                 sevent
clus2              0  1
  HHLA2 MUTATED    5  5
  HHLA2 WILD-TYPE 68 80
  HHLA2 MUTATED HHLA2 WILD-TYPE 
             10             148 
  HHLA2 MUTATED HHLA2 WILD-TYPE 
              5              80 
$`HHLA2 MUTATED`
TCGA-D3-A2J8 TCGA-DA-A1I7 TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A29E TCGA-EE-A29V 
       65.49        61.18        33.73        14.70        39.62        25.87 
TCGA-EE-A2MC TCGA-EE-A3AG TCGA-ER-A3ET TCGA-FS-A1ZE 
       61.51        23.47        80.32        40.27 

$`HHLA2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 
       43.40        23.77        11.87        48.76        12.10        58.03 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
       71.24        60.23        24.53         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
       49.74         2.70         6.38        48.89        36.03       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I8 
       20.38       194.83       176.55        35.93       107.34        53.92 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       65.92        23.44        68.09        28.60        10.49       215.44 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
       15.68        29.82         8.65        26.86         4.93       109.64 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29H 
       78.87       168.26        63.32        47.84        13.97        32.19 
TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
        2.56        44.35        18.58        56.42        37.35        14.47 
TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
       55.89       345.96        17.92        46.82        78.94        24.43 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE 
       39.25        58.75        47.54        43.23       314.53       135.91 
TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM 
      182.01        22.55        89.33        54.71        55.00        75.48 
TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT 
       90.94       101.95        13.87        14.30        55.59        19.56 
TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MD 
       67.13        21.67       129.24        28.80        19.76        47.28 
TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK 
      103.27       103.17        16.96       204.62        96.23       144.76 
TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR 
      203.01       167.87        47.54       248.61        43.23       103.56 
TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC 
      136.44        41.59        53.26         4.24       122.73        25.84 
TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F 
        3.68        26.73        13.81       138.77        12.59        26.37 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FS-A1YW TCGA-FS-A1YX 
        6.41       131.08        44.05        79.99       216.92        48.59 
TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA 
      228.59       202.62        20.91        28.08         7.76        27.68 
TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH 
       48.85       357.37        53.52        15.45         9.70        32.71 
TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR 
       47.38        23.93       101.26        74.73       133.55        11.41 
TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ 
      148.77        53.16        26.56        49.48        27.06        27.02 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        0.20        76.41       120.46       117.93        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       64.41        62.76        32.48        39.58 

  HHLA2 MUTATED HHLA2 WILD-TYPE 
           14.7             0.2 
  HHLA2 MUTATED HHLA2 WILD-TYPE 
          80.32          357.37 
  HHLA2 MUTATED HHLA2 WILD-TYPE 
         39.945          47.690 
[1] "14.7 - 80.3 (39.9)" "0.2 - 357.4 (47.7)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE"   "HHLA2 MUTATED" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE"   "HHLA2 MUTATED" "HHLA2 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"HHLA2 WILD-TYPE"   "HHLA2 MUTATED"   "HHLA2 MUTATED" "HHLA2 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE"   "HHLA2 MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"HHLA2 WILD-TYPE"   "HHLA2 MUTATED" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"HHLA2 WILD-TYPE"   "HHLA2 MUTATED" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
  "HHLA2 MUTATED" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
  "HHLA2 MUTATED" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
  "HHLA2 MUTATED" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE"   "HHLA2 MUTATED" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE"   "HHLA2 MUTATED" "HHLA2 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"HHLA2 WILD-TYPE"   "HHLA2 MUTATED"   "HHLA2 MUTATED" "HHLA2 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE"   "HHLA2 MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"HHLA2 WILD-TYPE"   "HHLA2 MUTATED" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"HHLA2 WILD-TYPE"   "HHLA2 MUTATED" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
  "HHLA2 MUTATED" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
  "HHLA2 MUTATED" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
  "HHLA2 MUTATED" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE"   "HHLA2 MUTATED" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE"   "HHLA2 MUTATED" "HHLA2 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"HHLA2 WILD-TYPE"   "HHLA2 MUTATED"   "HHLA2 MUTATED" "HHLA2 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE"   "HHLA2 MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"HHLA2 WILD-TYPE"   "HHLA2 MUTATED" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"HHLA2 WILD-TYPE"   "HHLA2 MUTATED" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
  "HHLA2 MUTATED" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
  "HHLA2 MUTATED" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
  "HHLA2 MUTATED" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"HHLA2 WILD-TYPE" "HHLA2 WILD-TYPE" 
[1] "hr=" "1.2"
D55V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  HHLA2 MUTATED                    3             0
  HHLA2 WILD-TYPE                 19             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  HHLA2 MUTATED                                                                                          3
  HHLA2 WILD-TYPE                                                                                       29
                 vv
clus              REGIONAL LYMPH NODE
  HHLA2 MUTATED                     4
  HHLA2 WILD-TYPE                 100
D55V3, multiclass
                                                                                          clus
vv                                                                                         HHLA2 MUTATED
  DISTANT METASTASIS                                                                                   3
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             3
  REGIONAL LYMPH NODE                                                                                  4
                                                                                          clus
vv                                                                                         HHLA2 WILD-TYPE
  DISTANT METASTASIS                                                                                    19
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              29
  REGIONAL LYMPH NODE                                                                                  100
D55V4, binary
                 cls
clus               0  1
  HHLA2 MUTATED    3  7
  HHLA2 WILD-TYPE 57 92
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HHLA2 MUTATED      3    7
  HHLA2 WILD-TYPE   57   92
        clus
vv       HHLA2 MUTATED HHLA2 WILD-TYPE
  FEMALE             3              57
  MALE               7              92
                 vv
clus               M0  M1 M1A M1B M1C
  HHLA2 MUTATED     9   0   0   0   0
  HHLA2 WILD-TYPE 129   2   1   2   2
D55V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2A N2B N2C N3 NX
  HHLA2 MUTATED    4  0   1   3   0   1   0  0  0
  HHLA2 WILD-TYPE 83  2   6  12   4   9   5 14  2
D55V6, multiclass
D55V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  HHLA2 MUTATED             0       1        0        1        1         0
  HHLA2 WILD-TYPE           3      16       10       11       17         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  HHLA2 MUTATED           0         1         0          1          2
  HHLA2 WILD-TYPE         9         6         7          5         15
                 vv
clus              STAGE IIIC STAGE IV
  HHLA2 MUTATED            2        0
  HHLA2 WILD-TYPE         19        5
D55V8, multiclass

Clustering(56) Variable = LILRB4 MUTATION ANALYSIS
D56V1, survival
                  sevent
clus2               0  1
  LILRB4 MUTATED    9 14
  LILRB4 WILD-TYPE 64 71
  LILRB4 MUTATED LILRB4 WILD-TYPE 
              23              135 
  LILRB4 MUTATED LILRB4 WILD-TYPE 
              14               71 
$`LILRB4 MUTATED`
TCGA-D3-A1Q7 TCGA-D3-A2J6 TCGA-DA-A1I0 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20H 
      121.22        43.40        20.38        26.86         4.93       168.26 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29N TCGA-EE-A29V TCGA-EE-A2A6 TCGA-EE-A2GS 
       13.97        39.62        18.58        25.87        58.75        55.59 
TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2MD TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A3AE 
       67.13       129.24        47.28       103.56       136.44        26.73 
TCGA-ER-A19F TCGA-FS-A1Z0 TCGA-FS-A1ZA TCGA-FS-A1ZQ TCGA-FS-A1ZU 
       26.37       202.62        27.68       133.55        26.56 

$`LILRB4 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J8 
       16.57       112.54        71.80        28.08        31.59        65.49 
TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC 
       23.77        11.87        48.76        12.10        58.03        71.24 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 TCGA-D9-A149 
       60.23        24.53         9.30        21.47       148.31        49.74 
TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I1 
        2.70         6.38        48.89        36.03       117.17       194.83 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
      176.55        35.93       107.34        61.18        53.92        65.92 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       23.44        68.09        28.60        10.49       215.44        15.68 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A20B TCGA-EE-A20F 
       29.82         8.65        33.73        14.70       109.64        78.87 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29P 
       63.32        47.84        32.19         2.56        44.35        56.42 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A0 
       37.35        14.47        55.89       345.96        17.92        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD 
       78.94        24.43        39.25        47.54        43.23       314.53 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL 
      135.91       182.01        22.55        89.33        54.71        55.00 
TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GT 
       75.48        90.94       101.95        13.87        14.30        19.56 
TCGA-EE-A2M5 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2ME TCGA-EE-A2MG 
       21.67        28.80        19.76        61.51       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM 
       16.96       204.62        96.23       144.76       203.01       167.87 
TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA 
       47.54       248.61        43.23        41.59        53.26         4.24 
TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH 
      122.73        25.84         3.68        13.81        23.47       138.77 
TCGA-ER-A19D TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
       12.59         6.41       131.08        44.05        79.99        80.32 
TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 
      216.92        48.59       228.59        20.91        28.08         7.76 
TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG 
       48.85       357.37        53.52        40.27        15.45         9.70 
TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZR 
       32.71        47.38        23.93       101.26        74.73        11.41 
TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 
      148.77        53.16        49.48        27.06        27.02         0.20 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 
       76.41       120.46       117.93        84.72        10.09        64.41 
TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       62.76        32.48        39.58 

  LILRB4 MUTATED LILRB4 WILD-TYPE 
            4.93             0.20 
  LILRB4 MUTATED LILRB4 WILD-TYPE 
          202.62           357.37 
  LILRB4 MUTATED LILRB4 WILD-TYPE 
           43.40            47.84 
[1] "4.9 - 202.6 (43.4)" "0.2 - 357.4 (47.8)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE"   "LILRB4 MUTATED" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE"   "LILRB4 MUTATED" "LILRB4 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"LILRB4 WILD-TYPE"   "LILRB4 MUTATED" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE"   "LILRB4 MUTATED" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
  "LILRB4 MUTATED" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE"   "LILRB4 MUTATED" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE"   "LILRB4 MUTATED"   "LILRB4 MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE"   "LILRB4 MUTATED" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"LILRB4 WILD-TYPE"   "LILRB4 MUTATED" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE"   "LILRB4 MUTATED" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE"   "LILRB4 MUTATED" "LILRB4 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
  "LILRB4 MUTATED" "LILRB4 WILD-TYPE"   "LILRB4 MUTATED" "LILRB4 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE"   "LILRB4 MUTATED" "LILRB4 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE"   "LILRB4 MUTATED"   "LILRB4 MUTATED" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE"   "LILRB4 MUTATED" "LILRB4 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE"   "LILRB4 MUTATED" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
  "LILRB4 MUTATED" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
  "LILRB4 MUTATED" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
  "LILRB4 MUTATED" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
  "LILRB4 MUTATED" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE"   "LILRB4 MUTATED" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE"   "LILRB4 MUTATED" "LILRB4 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"LILRB4 WILD-TYPE"   "LILRB4 MUTATED" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE"   "LILRB4 MUTATED" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
  "LILRB4 MUTATED" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE"   "LILRB4 MUTATED" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE"   "LILRB4 MUTATED"   "LILRB4 MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE"   "LILRB4 MUTATED" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"LILRB4 WILD-TYPE"   "LILRB4 MUTATED" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE"   "LILRB4 MUTATED" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE"   "LILRB4 MUTATED" "LILRB4 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
  "LILRB4 MUTATED" "LILRB4 WILD-TYPE"   "LILRB4 MUTATED" "LILRB4 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE"   "LILRB4 MUTATED" "LILRB4 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE"   "LILRB4 MUTATED"   "LILRB4 MUTATED" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE"   "LILRB4 MUTATED" "LILRB4 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE"   "LILRB4 MUTATED" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
  "LILRB4 MUTATED" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
  "LILRB4 MUTATED" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
  "LILRB4 MUTATED" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
  "LILRB4 MUTATED" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE"   "LILRB4 MUTATED" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE"   "LILRB4 MUTATED" "LILRB4 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"LILRB4 WILD-TYPE"   "LILRB4 MUTATED" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE"   "LILRB4 MUTATED" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
  "LILRB4 MUTATED" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE"   "LILRB4 MUTATED" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE"   "LILRB4 MUTATED"   "LILRB4 MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE"   "LILRB4 MUTATED" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"LILRB4 WILD-TYPE"   "LILRB4 MUTATED" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE"   "LILRB4 MUTATED" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE"   "LILRB4 MUTATED" "LILRB4 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
  "LILRB4 MUTATED" "LILRB4 WILD-TYPE"   "LILRB4 MUTATED" "LILRB4 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE"   "LILRB4 MUTATED" "LILRB4 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE"   "LILRB4 MUTATED"   "LILRB4 MUTATED" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE"   "LILRB4 MUTATED" "LILRB4 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE"   "LILRB4 MUTATED" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
  "LILRB4 MUTATED" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
  "LILRB4 MUTATED" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
  "LILRB4 MUTATED" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
  "LILRB4 MUTATED" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"LILRB4 WILD-TYPE" "LILRB4 WILD-TYPE" 
[1] "hr=" "1.2"
D56V2, continuous
                  vv
clus               DISTANT METASTASIS PRIMARY TUMOR
  LILRB4 MUTATED                    6             0
  LILRB4 WILD-TYPE                 16             1
                  vv
clus               REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  LILRB4 MUTATED                                                                                          1
  LILRB4 WILD-TYPE                                                                                       31
                  vv
clus               REGIONAL LYMPH NODE
  LILRB4 MUTATED                    16
  LILRB4 WILD-TYPE                  88
D56V3, multiclass
                                                                                          clus
vv                                                                                         LILRB4 MUTATED
  DISTANT METASTASIS                                                                                    6
  PRIMARY TUMOR                                                                                         0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              1
  REGIONAL LYMPH NODE                                                                                  16
                                                                                          clus
vv                                                                                         LILRB4 WILD-TYPE
  DISTANT METASTASIS                                                                                     16
  PRIMARY TUMOR                                                                                           1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               31
  REGIONAL LYMPH NODE                                                                                    88
D56V4, binary
                  cls
clus                0  1
  LILRB4 MUTATED    8 15
  LILRB4 WILD-TYPE 52 84
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LILRB4 MUTATED      8   15
  LILRB4 WILD-TYPE   52   84
        clus
vv       LILRB4 MUTATED LILRB4 WILD-TYPE
  FEMALE              8               52
  MALE               15               84
                  vv
clus                M0  M1 M1A M1B M1C
  LILRB4 MUTATED    22   0   1   0   0
  LILRB4 WILD-TYPE 116   2   0   2   2
D56V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2A N2B N2C N3 NX
  LILRB4 MUTATED   17  0   0   3   0   0   1  2  0
  LILRB4 WILD-TYPE 70  2   7  12   4  10   4 12  2
D56V6, multiclass
D56V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  LILRB4 MUTATED             1       4        4        2        2         0
  LILRB4 WILD-TYPE           2      13        6       10       16         7
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  LILRB4 MUTATED           1         1         0          0          2
  LILRB4 WILD-TYPE         8         6         7          6         15
                  vv
clus               STAGE IIIC STAGE IV
  LILRB4 MUTATED            4        0
  LILRB4 WILD-TYPE         17        5
D56V8, multiclass

Clustering(57) Variable = SLC38A4 MUTATION ANALYSIS
D57V1, survival
                   sevent
clus2                0  1
  SLC38A4 MUTATED    9 10
  SLC38A4 WILD-TYPE 64 75
  SLC38A4 MUTATED SLC38A4 WILD-TYPE 
               19               139 
  SLC38A4 MUTATED SLC38A4 WILD-TYPE 
               10                75 
$`SLC38A4 MUTATED`
TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D9-A1JW TCGA-DA-A1I1 TCGA-DA-A1IC 
       11.87        48.76        12.10         2.70       194.83        68.09 
TCGA-EE-A181 TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29M TCGA-EE-A2A0 TCGA-EE-A2A2 
       33.73       168.26        63.32        44.35        46.82        24.43 
TCGA-EE-A2GI TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MS TCGA-EE-A2MT TCGA-GN-A265 
       22.55       204.62        96.23       136.44        41.59        84.72 
TCGA-GN-A266 
       10.09 

$`SLC38A4 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE 
       43.40        65.49        23.77        58.03        71.24        60.23 
TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JX 
       24.53         9.30        21.47       148.31        49.74         6.38 
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I4 
       48.89        36.03       117.17        20.38       176.55        35.93 
TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A3F2 
      107.34        61.18        53.92        65.92        23.44        28.60 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 
       10.49       215.44        15.68        29.82         8.65        14.70 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29D 
       26.86         4.93       109.64        78.87        47.84        13.97 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       39.62        32.19         2.56        18.58        56.42        37.35 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A1 
       14.47        55.89       345.96        25.87        17.92        78.94 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE 
       39.25        58.75        47.54        43.23       314.53       135.91 
TCGA-EE-A2GH TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN 
      182.01        89.33        54.71        55.00        75.48        90.94 
TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU 
      101.95        13.87        14.30        55.59        19.56        67.13 
TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD 
       21.67       129.24        28.80        19.76        61.51        47.28 
TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM 
      103.27       103.17        16.96       144.76       203.01       167.87 
TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MU TCGA-EE-A3AA 
       47.54       248.61        43.23       103.56        53.26         4.24 
TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG 
      122.73        25.84         3.68        26.73        13.81        23.47 
TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N 
      138.77        12.59        26.37         6.41       131.08        44.05 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 
       79.99        80.32       216.92        48.59       228.59       202.62 
TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC 
       20.91        28.08         7.76        27.68        48.85       357.37 
TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ 
       53.52        40.27        15.45         9.70        32.71        47.38 
TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS 
       23.93       101.26        74.73       133.55        11.41       148.77 
TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 
       53.16        26.56        49.48        27.06        27.02         0.20 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
       76.41       120.46       117.93        64.41        62.76        32.48 
TCGA-GN-A26D 
       39.58 

  SLC38A4 MUTATED SLC38A4 WILD-TYPE 
              2.7               0.2 
  SLC38A4 MUTATED SLC38A4 WILD-TYPE 
           204.62            357.37 
  SLC38A4 MUTATED SLC38A4 WILD-TYPE 
            46.82             47.54 
[1] "2.7 - 204.6 (46.8)" "0.2 - 357.4 (47.5)"
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"SLC38A4 WILD-TYPE"   "SLC38A4 MUTATED"   "SLC38A4 MUTATED"   "SLC38A4 MUTATED" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
  "SLC38A4 MUTATED" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE"   "SLC38A4 MUTATED" "SLC38A4 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE"   "SLC38A4 MUTATED" "SLC38A4 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"SLC38A4 WILD-TYPE"   "SLC38A4 MUTATED" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE"   "SLC38A4 MUTATED" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
  "SLC38A4 MUTATED" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE"   "SLC38A4 MUTATED" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE"   "SLC38A4 MUTATED" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"SLC38A4 WILD-TYPE"   "SLC38A4 MUTATED" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"SLC38A4 WILD-TYPE"   "SLC38A4 MUTATED" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE"   "SLC38A4 MUTATED"   "SLC38A4 MUTATED" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE"   "SLC38A4 MUTATED" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
  "SLC38A4 MUTATED" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
  "SLC38A4 MUTATED"   "SLC38A4 MUTATED" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"SLC38A4 WILD-TYPE"   "SLC38A4 MUTATED"   "SLC38A4 MUTATED"   "SLC38A4 MUTATED" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
  "SLC38A4 MUTATED" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE"   "SLC38A4 MUTATED" "SLC38A4 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE"   "SLC38A4 MUTATED" "SLC38A4 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"SLC38A4 WILD-TYPE"   "SLC38A4 MUTATED" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE"   "SLC38A4 MUTATED" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
  "SLC38A4 MUTATED" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE"   "SLC38A4 MUTATED" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE"   "SLC38A4 MUTATED" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"SLC38A4 WILD-TYPE"   "SLC38A4 MUTATED" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"SLC38A4 WILD-TYPE"   "SLC38A4 MUTATED" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE"   "SLC38A4 MUTATED"   "SLC38A4 MUTATED" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE"   "SLC38A4 MUTATED" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
  "SLC38A4 MUTATED" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
  "SLC38A4 MUTATED"   "SLC38A4 MUTATED" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"SLC38A4 WILD-TYPE"   "SLC38A4 MUTATED"   "SLC38A4 MUTATED"   "SLC38A4 MUTATED" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
  "SLC38A4 MUTATED" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE"   "SLC38A4 MUTATED" "SLC38A4 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE"   "SLC38A4 MUTATED" "SLC38A4 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"SLC38A4 WILD-TYPE"   "SLC38A4 MUTATED" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE"   "SLC38A4 MUTATED" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
  "SLC38A4 MUTATED" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE"   "SLC38A4 MUTATED" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE"   "SLC38A4 MUTATED" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"SLC38A4 WILD-TYPE"   "SLC38A4 MUTATED" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"SLC38A4 WILD-TYPE"   "SLC38A4 MUTATED" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE"   "SLC38A4 MUTATED"   "SLC38A4 MUTATED" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE"   "SLC38A4 MUTATED" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
  "SLC38A4 MUTATED" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
  "SLC38A4 MUTATED"   "SLC38A4 MUTATED" "SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"SLC38A4 WILD-TYPE" "SLC38A4 WILD-TYPE" 
[1] "hr=" "1"  
D57V2, continuous
                   vv
clus                DISTANT METASTASIS PRIMARY TUMOR
  SLC38A4 MUTATED                    3             1
  SLC38A4 WILD-TYPE                 19             0
                   vv
clus                REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  SLC38A4 MUTATED                                                                                          3
  SLC38A4 WILD-TYPE                                                                                       29
                   vv
clus                REGIONAL LYMPH NODE
  SLC38A4 MUTATED                    12
  SLC38A4 WILD-TYPE                  92
D57V3, multiclass
                                                                                          clus
vv                                                                                         SLC38A4 MUTATED
  DISTANT METASTASIS                                                                                     3
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               3
  REGIONAL LYMPH NODE                                                                                   12
                                                                                          clus
vv                                                                                         SLC38A4 WILD-TYPE
  DISTANT METASTASIS                                                                                      19
  PRIMARY TUMOR                                                                                            0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                29
  REGIONAL LYMPH NODE                                                                                     92
D57V4, binary
                   cls
clus                 0  1
  SLC38A4 MUTATED    3 16
  SLC38A4 WILD-TYPE 57 83
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC38A4 MUTATED      3   16
  SLC38A4 WILD-TYPE   57   83
        clus
vv       SLC38A4 MUTATED SLC38A4 WILD-TYPE
  FEMALE               3                57
  MALE                16                83
                   vv
clus                 M0  M1 M1A M1B M1C
  SLC38A4 MUTATED    17   0   0   0   0
  SLC38A4 WILD-TYPE 121   2   1   2   2
D57V5, multiclass
                   vv
clus                N0 N1 N1A N1B N2A N2B N2C N3 NX
  SLC38A4 MUTATED   10  0   1   2   1   1   1  1  0
  SLC38A4 WILD-TYPE 77  2   6  13   3   9   4 13  2
D57V6, multiclass
D57V7, continuous
                   vv
clus                I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  SLC38A4 MUTATED             0       1        2        2        3         1
  SLC38A4 WILD-TYPE           3      16        8       10       15         6
                   vv
clus                STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  SLC38A4 MUTATED           1         0         0          1          2
  SLC38A4 WILD-TYPE         8         7         7          5         15
                   vv
clus                STAGE IIIC STAGE IV
  SLC38A4 MUTATED            3        0
  SLC38A4 WILD-TYPE         18        5
D57V8, multiclass

Clustering(58) Variable = OR2L3 MUTATION ANALYSIS
D58V1, survival
                 sevent
clus2              0  1
  OR2L3 MUTATED    3  9
  OR2L3 WILD-TYPE 70 76
  OR2L3 MUTATED OR2L3 WILD-TYPE 
             12             146 
  OR2L3 MUTATED OR2L3 WILD-TYPE 
              9              76 
$`OR2L3 MUTATED`
TCGA-D3-A3C6 TCGA-DA-A1I0 TCGA-EE-A2GM TCGA-EE-A2M5 TCGA-EE-A2MJ TCGA-EE-A2MM 
       58.03        20.38        75.48        21.67        96.23       167.87 
TCGA-EE-A2MR TCGA-EE-A3AG TCGA-FS-A1ZC TCGA-FS-A1ZF TCGA-FS-A1ZQ TCGA-FS-A1ZZ 
      103.56        23.47       357.37        15.45       133.55        27.02 

$`OR2L3 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
       71.24        60.23        24.53         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
       49.74         2.70         6.38        48.89        36.03       117.17 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
      194.83       176.55        35.93       107.34        61.18        53.92 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       65.92        23.44        68.09        28.60        10.49       215.44 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
       15.68        29.82         8.65        33.73        14.70        26.86 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.93       109.64        78.87       168.26        63.32        47.84 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N 
       13.97        39.62        32.19         2.56        44.35        18.58 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V 
       56.42        37.35        14.47        55.89       345.96        25.87 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
       17.92        46.82        78.94        24.43        39.25        58.75 
TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI 
       47.54        43.23       314.53       135.91       182.01        22.55 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP 
       89.33        54.71        55.00        90.94       101.95        13.87 
TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2M7 
       14.30        55.59        19.56        67.13       129.24        28.80 
TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH 
       19.76        61.51        47.28       103.27       103.17        16.96 
TCGA-EE-A2MI TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ 
      204.62       144.76       203.01        47.54       248.61        43.23 
TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC 
      136.44        41.59        53.26         4.24       122.73        25.84 
TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F 
        3.68        26.73        13.81       138.77        12.59        26.37 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW 
        6.41       131.08        44.05        79.99        80.32       216.92 
TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 
       48.59       228.59       202.62        20.91        28.08         7.76 
TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZG TCGA-FS-A1ZH 
       27.68        48.85        53.52        40.27         9.70        32.71 
TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS 
       47.38        23.93       101.26        74.73        11.41       148.77 
TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FW-A3I3 TCGA-GN-A261 
       53.16        26.56        49.48        27.06         0.20        76.41 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 
      120.46       117.93        84.72        10.09        64.41        62.76 
TCGA-GN-A26A TCGA-GN-A26D 
       32.48        39.58 

  OR2L3 MUTATED OR2L3 WILD-TYPE 
          15.45            0.20 
  OR2L3 MUTATED OR2L3 WILD-TYPE 
         357.37          345.96 
  OR2L3 MUTATED OR2L3 WILD-TYPE 
         66.755          47.460 
[1] "15.4 - 357.4 (66.8)" "0.2 - 346.0 (47.5)" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
[1] "hr=" "1"  
D58V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  OR2L3 MUTATED                    4             0
  OR2L3 WILD-TYPE                 18             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  OR2L3 MUTATED                                                                                          3
  OR2L3 WILD-TYPE                                                                                       29
                 vv
clus              REGIONAL LYMPH NODE
  OR2L3 MUTATED                     5
  OR2L3 WILD-TYPE                  99
D58V3, multiclass
                                                                                          clus
vv                                                                                         OR2L3 MUTATED
  DISTANT METASTASIS                                                                                   4
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             3
  REGIONAL LYMPH NODE                                                                                  5
                                                                                          clus
vv                                                                                         OR2L3 WILD-TYPE
  DISTANT METASTASIS                                                                                    18
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              29
  REGIONAL LYMPH NODE                                                                                   99
D58V4, binary
                 cls
clus               0  1
  OR2L3 MUTATED    5  7
  OR2L3 WILD-TYPE 55 92
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2L3 MUTATED      5    7
  OR2L3 WILD-TYPE   55   92
        clus
vv       OR2L3 MUTATED OR2L3 WILD-TYPE
  FEMALE             5              55
  MALE               7              92
                 vv
clus               M0  M1 M1A M1B M1C
  OR2L3 MUTATED    10   0   1   0   0
  OR2L3 WILD-TYPE 128   2   0   2   2
D58V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2A N2B N2C N3 NX
  OR2L3 MUTATED   10  0   0   0   0   0   0  1  0
  OR2L3 WILD-TYPE 77  2   7  15   4  10   5 13  2
D58V6, multiclass
D58V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  OR2L3 MUTATED             2       3        0        1        1         0
  OR2L3 WILD-TYPE           1      14       10       11       17         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  OR2L3 MUTATED           1         2         0          0          0
  OR2L3 WILD-TYPE         8         5         7          6         17
                 vv
clus              STAGE IIIC STAGE IV
  OR2L3 MUTATED            1        0
  OR2L3 WILD-TYPE         20        5
D58V8, multiclass

Clustering(59) Variable = HBD MUTATION ANALYSIS
D59V1, survival
               sevent
clus2            0  1
  HBD MUTATED    3  5
  HBD WILD-TYPE 70 80
  HBD MUTATED HBD WILD-TYPE 
            8           150 
  HBD MUTATED HBD WILD-TYPE 
            5            80 
$`HBD MUTATED`
TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A185 TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A2A6 
       33.73        14.70         4.93        47.84        13.97        58.75 
TCGA-EE-A2MJ TCGA-EE-A3AE 
       96.23        26.73 

$`HBD WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW 
      148.31        49.74         2.70         6.38        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       61.18        53.92        65.92        23.44        68.09        28.60 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A183 
       10.49       215.44        15.68        29.82         8.65        26.86 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29E TCGA-EE-A29H 
      109.64        78.87       168.26        63.32        39.62        32.19 
TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
        2.56        44.35        18.58        56.42        37.35        14.47 
TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
       55.89       345.96        25.87        17.92        46.82        78.94 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE 
       24.43        39.25        47.54        43.23       314.53       135.91 
TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM 
      182.01        22.55        89.33        54.71        55.00        75.48 
TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT 
       90.94       101.95        13.87        14.30        55.59        19.56 
TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC 
       67.13        21.67       129.24        28.80        19.76        61.51 
TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MK 
       47.28       103.27       103.17        16.96       204.62       144.76 
TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR 
      203.01       167.87        47.54       248.61        43.23       103.56 
TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC 
      136.44        41.59        53.26         4.24       122.73        25.84 
TCGA-EE-A3AD TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F 
        3.68        13.81        23.47       138.77        12.59        26.37 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW 
        6.41       131.08        44.05        79.99        80.32       216.92 
TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 
       48.59       228.59       202.62        20.91        28.08         7.76 
TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF 
       27.68        48.85       357.37        53.52        40.27        15.45 
TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP 
        9.70        32.71        47.38        23.93       101.26        74.73 
TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW 
      133.55        11.41       148.77        53.16        26.56        49.48 
TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
       27.06        27.02         0.20        76.41       120.46       117.93 
TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       84.72        10.09        64.41        62.76        32.48        39.58 

  HBD MUTATED HBD WILD-TYPE 
         4.93          0.20 
  HBD MUTATED HBD WILD-TYPE 
        96.23        357.37 
  HBD MUTATED HBD WILD-TYPE 
       30.230        48.065 
[1] "4.9 - 96.2 (30.2)"  "0.2 - 357.4 (48.1)"
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A148    TCGA-D9-A149 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-D9-A1JW    TCGA-D9-A1JX    TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-DA-A1I0    TCGA-DA-A1I1    TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-DA-A1I7    TCGA-DA-A1I8    TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-DA-A3F2    TCGA-DA-A3F3    TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A17Z    TCGA-EE-A181    TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185 
"HBD WILD-TYPE"   "HBD MUTATED"   "HBD MUTATED" "HBD WILD-TYPE"   "HBD MUTATED" 
   TCGA-EE-A20B    TCGA-EE-A20F    TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE"   "HBD MUTATED" 
   TCGA-EE-A29D    TCGA-EE-A29E    TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M 
  "HBD MUTATED" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A29N    TCGA-EE-A29P    TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A29T    TCGA-EE-A29V    TCGA-EE-A29X    TCGA-EE-A2A0    TCGA-EE-A2A1 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6    TCGA-EE-A2GB    TCGA-EE-A2GC 
"HBD WILD-TYPE" "HBD WILD-TYPE"   "HBD MUTATED" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A2GD    TCGA-EE-A2GE    TCGA-EE-A2GH    TCGA-EE-A2GI    TCGA-EE-A2GJ 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A2GK    TCGA-EE-A2GL    TCGA-EE-A2GM    TCGA-EE-A2GN    TCGA-EE-A2GO 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A2GP    TCGA-EE-A2GR    TCGA-EE-A2GS    TCGA-EE-A2GT    TCGA-EE-A2GU 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A2M5    TCGA-EE-A2M6    TCGA-EE-A2M7    TCGA-EE-A2M8    TCGA-EE-A2MC 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A2MD    TCGA-EE-A2ME    TCGA-EE-A2MG    TCGA-EE-A2MH    TCGA-EE-A2MI 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A2MJ    TCGA-EE-A2MK    TCGA-EE-A2ML    TCGA-EE-A2MM    TCGA-EE-A2MN 
  "HBD MUTATED" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A2MP    TCGA-EE-A2MQ    TCGA-EE-A2MR    TCGA-EE-A2MS    TCGA-EE-A2MT 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A2MU    TCGA-EE-A3AA    TCGA-EE-A3AB    TCGA-EE-A3AC    TCGA-EE-A3AD 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A3AE    TCGA-EE-A3AF    TCGA-EE-A3AG    TCGA-EE-A3AH    TCGA-ER-A19D 
  "HBD MUTATED" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19N    TCGA-ER-A1A1 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-ER-A3ET    TCGA-FS-A1YW    TCGA-FS-A1YX    TCGA-FS-A1YY    TCGA-FS-A1Z0 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-FS-A1Z3    TCGA-FS-A1Z4    TCGA-FS-A1Z7    TCGA-FS-A1ZA    TCGA-FS-A1ZB 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-FS-A1ZC    TCGA-FS-A1ZD    TCGA-FS-A1ZE    TCGA-FS-A1ZF    TCGA-FS-A1ZG 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-FS-A1ZH    TCGA-FS-A1ZJ    TCGA-FS-A1ZK    TCGA-FS-A1ZM    TCGA-FS-A1ZP 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-FS-A1ZQ    TCGA-FS-A1ZR    TCGA-FS-A1ZS    TCGA-FS-A1ZT    TCGA-FS-A1ZU 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-FS-A1ZW    TCGA-FS-A1ZY    TCGA-FS-A1ZZ    TCGA-FW-A3I3    TCGA-GN-A261 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265    TCGA-GN-A266    TCGA-GN-A267 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A148    TCGA-D9-A149 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-D9-A1JW    TCGA-D9-A1JX    TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-DA-A1I0    TCGA-DA-A1I1    TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-DA-A1I7    TCGA-DA-A1I8    TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-DA-A3F2    TCGA-DA-A3F3    TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A17Z    TCGA-EE-A181    TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185 
"HBD WILD-TYPE"   "HBD MUTATED"   "HBD MUTATED" "HBD WILD-TYPE"   "HBD MUTATED" 
   TCGA-EE-A20B    TCGA-EE-A20F    TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE"   "HBD MUTATED" 
   TCGA-EE-A29D    TCGA-EE-A29E    TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M 
  "HBD MUTATED" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A29N    TCGA-EE-A29P    TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A29T    TCGA-EE-A29V    TCGA-EE-A29X    TCGA-EE-A2A0    TCGA-EE-A2A1 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6    TCGA-EE-A2GB    TCGA-EE-A2GC 
"HBD WILD-TYPE" "HBD WILD-TYPE"   "HBD MUTATED" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A2GD    TCGA-EE-A2GE    TCGA-EE-A2GH    TCGA-EE-A2GI    TCGA-EE-A2GJ 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A2GK    TCGA-EE-A2GL    TCGA-EE-A2GM    TCGA-EE-A2GN    TCGA-EE-A2GO 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A2GP    TCGA-EE-A2GR    TCGA-EE-A2GS    TCGA-EE-A2GT    TCGA-EE-A2GU 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A2M5    TCGA-EE-A2M6    TCGA-EE-A2M7    TCGA-EE-A2M8    TCGA-EE-A2MC 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A2MD    TCGA-EE-A2ME    TCGA-EE-A2MG    TCGA-EE-A2MH    TCGA-EE-A2MI 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A2MJ    TCGA-EE-A2MK    TCGA-EE-A2ML    TCGA-EE-A2MM    TCGA-EE-A2MN 
  "HBD MUTATED" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A2MP    TCGA-EE-A2MQ    TCGA-EE-A2MR    TCGA-EE-A2MS    TCGA-EE-A2MT 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A2MU    TCGA-EE-A3AA    TCGA-EE-A3AB    TCGA-EE-A3AC    TCGA-EE-A3AD 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A3AE    TCGA-EE-A3AF    TCGA-EE-A3AG    TCGA-EE-A3AH    TCGA-ER-A19D 
  "HBD MUTATED" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19N    TCGA-ER-A1A1 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-ER-A3ET    TCGA-FS-A1YW    TCGA-FS-A1YX    TCGA-FS-A1YY    TCGA-FS-A1Z0 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-FS-A1Z3    TCGA-FS-A1Z4    TCGA-FS-A1Z7    TCGA-FS-A1ZA    TCGA-FS-A1ZB 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-FS-A1ZC    TCGA-FS-A1ZD    TCGA-FS-A1ZE    TCGA-FS-A1ZF    TCGA-FS-A1ZG 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-FS-A1ZH    TCGA-FS-A1ZJ    TCGA-FS-A1ZK    TCGA-FS-A1ZM    TCGA-FS-A1ZP 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-FS-A1ZQ    TCGA-FS-A1ZR    TCGA-FS-A1ZS    TCGA-FS-A1ZT    TCGA-FS-A1ZU 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-FS-A1ZW    TCGA-FS-A1ZY    TCGA-FS-A1ZZ    TCGA-FW-A3I3    TCGA-GN-A261 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265    TCGA-GN-A266    TCGA-GN-A267 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A148    TCGA-D9-A149 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-D9-A1JW    TCGA-D9-A1JX    TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-DA-A1I0    TCGA-DA-A1I1    TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-DA-A1I7    TCGA-DA-A1I8    TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-DA-A3F2    TCGA-DA-A3F3    TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A17Z    TCGA-EE-A181    TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185 
"HBD WILD-TYPE"   "HBD MUTATED"   "HBD MUTATED" "HBD WILD-TYPE"   "HBD MUTATED" 
   TCGA-EE-A20B    TCGA-EE-A20F    TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE"   "HBD MUTATED" 
   TCGA-EE-A29D    TCGA-EE-A29E    TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M 
  "HBD MUTATED" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A29N    TCGA-EE-A29P    TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A29T    TCGA-EE-A29V    TCGA-EE-A29X    TCGA-EE-A2A0    TCGA-EE-A2A1 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6    TCGA-EE-A2GB    TCGA-EE-A2GC 
"HBD WILD-TYPE" "HBD WILD-TYPE"   "HBD MUTATED" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A2GD    TCGA-EE-A2GE    TCGA-EE-A2GH    TCGA-EE-A2GI    TCGA-EE-A2GJ 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A2GK    TCGA-EE-A2GL    TCGA-EE-A2GM    TCGA-EE-A2GN    TCGA-EE-A2GO 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A2GP    TCGA-EE-A2GR    TCGA-EE-A2GS    TCGA-EE-A2GT    TCGA-EE-A2GU 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A2M5    TCGA-EE-A2M6    TCGA-EE-A2M7    TCGA-EE-A2M8    TCGA-EE-A2MC 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A2MD    TCGA-EE-A2ME    TCGA-EE-A2MG    TCGA-EE-A2MH    TCGA-EE-A2MI 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A2MJ    TCGA-EE-A2MK    TCGA-EE-A2ML    TCGA-EE-A2MM    TCGA-EE-A2MN 
  "HBD MUTATED" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A2MP    TCGA-EE-A2MQ    TCGA-EE-A2MR    TCGA-EE-A2MS    TCGA-EE-A2MT 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A2MU    TCGA-EE-A3AA    TCGA-EE-A3AB    TCGA-EE-A3AC    TCGA-EE-A3AD 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-EE-A3AE    TCGA-EE-A3AF    TCGA-EE-A3AG    TCGA-EE-A3AH    TCGA-ER-A19D 
  "HBD MUTATED" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19N    TCGA-ER-A1A1 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-ER-A3ET    TCGA-FS-A1YW    TCGA-FS-A1YX    TCGA-FS-A1YY    TCGA-FS-A1Z0 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-FS-A1Z3    TCGA-FS-A1Z4    TCGA-FS-A1Z7    TCGA-FS-A1ZA    TCGA-FS-A1ZB 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-FS-A1ZC    TCGA-FS-A1ZD    TCGA-FS-A1ZE    TCGA-FS-A1ZF    TCGA-FS-A1ZG 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-FS-A1ZH    TCGA-FS-A1ZJ    TCGA-FS-A1ZK    TCGA-FS-A1ZM    TCGA-FS-A1ZP 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-FS-A1ZQ    TCGA-FS-A1ZR    TCGA-FS-A1ZS    TCGA-FS-A1ZT    TCGA-FS-A1ZU 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-FS-A1ZW    TCGA-FS-A1ZY    TCGA-FS-A1ZZ    TCGA-FW-A3I3    TCGA-GN-A261 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265    TCGA-GN-A266    TCGA-GN-A267 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
   TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
"HBD WILD-TYPE" "HBD WILD-TYPE" "HBD WILD-TYPE" 
[1] "hr=" "2"  
D59V2, continuous
               vv
clus            DISTANT METASTASIS PRIMARY TUMOR
  HBD MUTATED                    1             0
  HBD WILD-TYPE                 21             1
               vv
clus            REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  HBD MUTATED                                                                                          0
  HBD WILD-TYPE                                                                                       32
               vv
clus            REGIONAL LYMPH NODE
  HBD MUTATED                     7
  HBD WILD-TYPE                  97
D59V3, multiclass
                                                                                          clus
vv                                                                                         HBD MUTATED
  DISTANT METASTASIS                                                                                 1
  PRIMARY TUMOR                                                                                      0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)           0
  REGIONAL LYMPH NODE                                                                                7
                                                                                          clus
vv                                                                                         HBD WILD-TYPE
  DISTANT METASTASIS                                                                                  21
  PRIMARY TUMOR                                                                                        1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            32
  REGIONAL LYMPH NODE                                                                                 97
D59V4, binary
               cls
clus             0  1
  HBD MUTATED    4  4
  HBD WILD-TYPE 56 95
[1] "tbl2"
               cls
clus            [,1] [,2]
  HBD MUTATED      4    4
  HBD WILD-TYPE   56   95
        clus
vv       HBD MUTATED HBD WILD-TYPE
  FEMALE           4            56
  MALE             4            95
               vv
clus             M0  M1 M1A M1B M1C
  HBD MUTATED     8   0   0   0   0
  HBD WILD-TYPE 130   2   1   2   2
D59V5, multiclass
               vv
clus            N0 N1 N1A N1B N2A N2B N2C N3 NX
  HBD MUTATED    5  0   0   2   0   0   0  1  0
  HBD WILD-TYPE 82  2   7  13   4  10   5 13  2
D59V6, multiclass
D59V7, continuous
               vv
clus            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  HBD MUTATED             0       0        2        1        2         0
  HBD WILD-TYPE           3      17        8       11       16         7
               vv
clus            STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  HBD MUTATED           0         0         0          0          0          3
  HBD WILD-TYPE         9         7         7          6         17         18
               vv
clus            STAGE IV
  HBD MUTATED          0
  HBD WILD-TYPE        5
D59V8, multiclass

Clustering(60) Variable = TBC1D3B MUTATION ANALYSIS
D60V1, survival
                   sevent
clus2                0  1
  TBC1D3B MUTATED    1  2
  TBC1D3B WILD-TYPE 72 83
  TBC1D3B MUTATED TBC1D3B WILD-TYPE 
                3               155 
  TBC1D3B MUTATED TBC1D3B WILD-TYPE 
                2                83 
$`TBC1D3B MUTATED`
TCGA-EE-A182 TCGA-EE-A2GT TCGA-GN-A266 
       14.70        19.56        10.09 

$`TBC1D3B WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW 
      148.31        49.74         2.70         6.38        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       61.18        53.92        65.92        23.44        68.09        28.60 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
       10.49       215.44        15.68        29.82         8.65        33.73 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A 
       26.86         4.93       109.64        78.87       168.26        63.32 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M 
       47.84        13.97        39.62        32.19         2.56        44.35 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T 
       18.58        56.42        37.35        14.47        55.89       345.96 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
       25.87        17.92        46.82        78.94        24.43        39.25 
TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH 
       58.75        47.54        43.23       314.53       135.91       182.01 
TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN 
       22.55        89.33        54.71        55.00        75.48        90.94 
TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GU TCGA-EE-A2M5 
      101.95        13.87        14.30        55.59        67.13        21.67 
TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME 
      129.24        28.80        19.76        61.51        47.28       103.27 
TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML 
      103.17        16.96       204.62        96.23       144.76       203.01 
TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS 
      167.87        47.54       248.61        43.23       103.56       136.44 
TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD 
       41.59        53.26         4.24       122.73        25.84         3.68 
TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F 
       26.73        13.81        23.47       138.77        12.59        26.37 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW 
        6.41       131.08        44.05        79.99        80.32       216.92 
TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 
       48.59       228.59       202.62        20.91        28.08         7.76 
TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF 
       27.68        48.85       357.37        53.52        40.27        15.45 
TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP 
        9.70        32.71        47.38        23.93       101.26        74.73 
TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW 
      133.55        11.41       148.77        53.16        26.56        49.48 
TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
       27.06        27.02         0.20        76.41       120.46       117.93 
TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       84.72        64.41        62.76        32.48        39.58 

  TBC1D3B MUTATED TBC1D3B WILD-TYPE 
            10.09              0.20 
  TBC1D3B MUTATED TBC1D3B WILD-TYPE 
            19.56            357.37 
  TBC1D3B MUTATED TBC1D3B WILD-TYPE 
            14.70             47.84 
[1] "10.1 - 19.6 (14.7)" "0.2 - 357.4 (47.8)"
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE"   "TBC1D3B MUTATED" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE"   "TBC1D3B MUTATED" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"TBC1D3B WILD-TYPE"   "TBC1D3B MUTATED" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE"   "TBC1D3B MUTATED" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE"   "TBC1D3B MUTATED" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"TBC1D3B WILD-TYPE"   "TBC1D3B MUTATED" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE"   "TBC1D3B MUTATED" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE"   "TBC1D3B MUTATED" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"TBC1D3B WILD-TYPE"   "TBC1D3B MUTATED" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
[1] "hr=" "6.7"
D60V2, continuous
                   vv
clus                DISTANT METASTASIS PRIMARY TUMOR
  TBC1D3B MUTATED                    1             0
  TBC1D3B WILD-TYPE                 21             1
                   vv
clus                REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  TBC1D3B MUTATED                                                                                          1
  TBC1D3B WILD-TYPE                                                                                       31
                   vv
clus                REGIONAL LYMPH NODE
  TBC1D3B MUTATED                     1
  TBC1D3B WILD-TYPE                 103
D60V3, multiclass
                                                                                          clus
vv                                                                                         TBC1D3B MUTATED
  DISTANT METASTASIS                                                                                     1
  PRIMARY TUMOR                                                                                          0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               1
  REGIONAL LYMPH NODE                                                                                    1
                                                                                          clus
vv                                                                                         TBC1D3B WILD-TYPE
  DISTANT METASTASIS                                                                                      21
  PRIMARY TUMOR                                                                                            1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                31
  REGIONAL LYMPH NODE                                                                                    103
D60V4, binary
                   cls
clus                 0  1
  TBC1D3B MUTATED    1  2
  TBC1D3B WILD-TYPE 59 97
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TBC1D3B MUTATED      1    2
  TBC1D3B WILD-TYPE   59   97
        clus
vv       TBC1D3B MUTATED TBC1D3B WILD-TYPE
  FEMALE               1                59
  MALE                 2                97
                   vv
clus                 M0  M1 M1A M1B M1C
  TBC1D3B MUTATED     2   0   0   0   0
  TBC1D3B WILD-TYPE 136   2   1   2   2
D60V5, multiclass
[1] "Remove cluster labels:" "TBC1D3B MUTATED"       
clus
  TBC1D3B MUTATED TBC1D3B WILD-TYPE 
                2               143 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A183        TCGA-EE-A185 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29T 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0        TCGA-EE-A2A1 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6        TCGA-EE-A2GB 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE        TCGA-EE-A2GH 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK        TCGA-EE-A2GL 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO        TCGA-EE-A2GP 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GU        TCGA-EE-A2M5 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2M6        TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2MD        TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2MI        TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2MM        TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2MR        TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A3AE        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19O        TCGA-ER-A1A1        TCGA-ER-A3ET 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY        TCGA-FS-A1Z0 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1Z4        TCGA-FS-A1Z7        TCGA-FS-A1ZA        TCGA-FS-A1ZB 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZC        TCGA-FS-A1ZD        TCGA-FS-A1ZE        TCGA-FS-A1ZF 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ        TCGA-FS-A1ZK 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZQ        TCGA-FS-A1ZR 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FW-A3I3        TCGA-GN-A261 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
                   vv
clus                N0 N1 N1A N1B N2A N2B N2C N3 NX
  TBC1D3B MUTATED    1  0   0   1   0   0   0  0  0
  TBC1D3B WILD-TYPE 86  2   7  14   4  10   5 14  2
D60V6, multiclass
[1] "Remove cluster labels:" "TBC1D3B MUTATED"       
clus
  TBC1D3B MUTATED TBC1D3B WILD-TYPE 
                2               144 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A183        TCGA-EE-A185 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N        TCGA-EE-A29P 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29T 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0        TCGA-EE-A2A1 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6        TCGA-EE-A2GB 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE        TCGA-EE-A2GH 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK        TCGA-EE-A2GL 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO        TCGA-EE-A2GP 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GU        TCGA-EE-A2M5 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2M6        TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2MD        TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2MI        TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2MM        TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2MR        TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A3AE        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19O        TCGA-ER-A1A1        TCGA-ER-A3ET 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY        TCGA-FS-A1Z0 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1Z4        TCGA-FS-A1Z7        TCGA-FS-A1ZA        TCGA-FS-A1ZB 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZC        TCGA-FS-A1ZD        TCGA-FS-A1ZE        TCGA-FS-A1ZF 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ        TCGA-FS-A1ZK 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZQ        TCGA-FS-A1ZR 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU        TCGA-FS-A1ZW 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FW-A3I3        TCGA-GN-A261 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A        TCGA-GN-A26D 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
D60V7, continuous
                   vv
clus                I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  TBC1D3B MUTATED             0       0        0        0        0         1
  TBC1D3B WILD-TYPE           3      17       10       12       18         6
                   vv
clus                STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  TBC1D3B MUTATED           0         0         0          0          0
  TBC1D3B WILD-TYPE         9         7         7          6         17
                   vv
clus                STAGE IIIC STAGE IV
  TBC1D3B MUTATED            1        0
  TBC1D3B WILD-TYPE         20        5
D60V8, multiclass
[1] "Remove cluster labels:" "TBC1D3B MUTATED"       
clus
  TBC1D3B MUTATED TBC1D3B WILD-TYPE 
                2               137 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-DA-A1HV        TCGA-DA-A1HW 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A183        TCGA-EE-A185 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H        TCGA-EE-A29A 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E        TCGA-EE-A29H 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29P        TCGA-EE-A29Q 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V        TCGA-EE-A29X 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AE        TCGA-EE-A3AH 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-ER-A19D        TCGA-ER-A19J        TCGA-ER-A19O        TCGA-ER-A1A1 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z4        TCGA-FS-A1Z7        TCGA-FS-A1ZA 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZQ 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FW-A3I3 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-GN-A261        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
"TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" "TBC1D3B WILD-TYPE" 
       TCGA-GN-A26D 
"TBC1D3B WILD-TYPE" 

Clustering(61) Variable = TCEB3C MUTATION ANALYSIS
D61V1, survival
                  sevent
clus2               0  1
  TCEB3C MUTATED   12 11
  TCEB3C WILD-TYPE 61 74
  TCEB3C MUTATED TCEB3C WILD-TYPE 
              23              135 
  TCEB3C MUTATED TCEB3C WILD-TYPE 
              11               74 
$`TCEB3C MUTATED`
TCGA-D3-A2JK TCGA-D3-A3MV TCGA-D9-A1JW TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1IC 
       12.10        21.47         2.70        35.93        61.18        68.09 
TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29S TCGA-EE-A2A2 
       33.73        14.70        39.62         2.56        55.89        24.43 
TCGA-EE-A2GB TCGA-EE-A2GS TCGA-EE-A2M5 TCGA-EE-A2ML TCGA-EE-A2MS TCGA-EE-A2MT 
       47.54        55.59        21.67       203.01       136.44        41.59 
TCGA-ER-A19F TCGA-FS-A1ZE TCGA-FS-A1ZK TCGA-FS-A1ZZ TCGA-GN-A266 
       26.37        40.27        23.93        27.02        10.09 

$`TCEB3C WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A3C6 
       43.40        65.49        23.77        11.87        48.76        58.03 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D9-A148 TCGA-D9-A149 
       71.24        60.23        24.53         9.30       148.31        49.74 
TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        6.38        48.89        36.03       117.17        20.38       194.83 
TCGA-DA-A1I2 TCGA-DA-A1I5 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A3F2 
      176.55       107.34        53.92        65.92        23.44        28.60 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A183 
       10.49       215.44        15.68        29.82         8.65        26.86 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.93       109.64        78.87       168.26        63.32        47.84 
TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       13.97        32.19        44.35        18.58        56.42        37.35 
TCGA-EE-A29R TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
       14.47       345.96        25.87        17.92        46.82        78.94 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH 
       39.25        58.75        43.23       314.53       135.91       182.01 
TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN 
       22.55        89.33        54.71        55.00        75.48        90.94 
TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M6 
      101.95        13.87        14.30        19.56        67.13       129.24 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG 
       28.80        19.76        61.51        47.28       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2MM TCGA-EE-A2MN 
       16.96       204.62        96.23       144.76       167.87        47.54 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB 
      248.61        43.23       103.56        53.26         4.24       122.73 
TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH 
       25.84         3.68        26.73        13.81        23.47       138.77 
TCGA-ER-A19D TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
       12.59         6.41       131.08        44.05        79.99        80.32 
TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 
      216.92        48.59       228.59       202.62        20.91        28.08 
TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZF 
        7.76        27.68        48.85       357.37        53.52        15.45 
TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ 
        9.70        32.71        47.38       101.26        74.73       133.55 
TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY 
       11.41       148.77        53.16        26.56        49.48        27.06 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 
        0.20        76.41       120.46       117.93        84.72        64.41 
TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       62.76        32.48        39.58 

  TCEB3C MUTATED TCEB3C WILD-TYPE 
            2.56             0.20 
  TCEB3C MUTATED TCEB3C WILD-TYPE 
          203.01           357.37 
  TCEB3C MUTATED TCEB3C WILD-TYPE 
           33.73            48.89 
[1] "2.6 - 203.0 (33.7)" "0.2 - 357.4 (48.9)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
  "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
  "TCEB3C MUTATED" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"TCEB3C WILD-TYPE"   "TCEB3C MUTATED"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
  "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
  "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
  "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
  "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
  "TCEB3C MUTATED" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"TCEB3C WILD-TYPE"   "TCEB3C MUTATED"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
  "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
  "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
  "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
  "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
  "TCEB3C MUTATED" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"TCEB3C WILD-TYPE"   "TCEB3C MUTATED"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
  "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
  "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
  "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
[1] "hr=" "1.4"
D61V2, continuous
                  vv
clus               DISTANT METASTASIS PRIMARY TUMOR
  TCEB3C MUTATED                    4             0
  TCEB3C WILD-TYPE                 18             1
                  vv
clus               REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  TCEB3C MUTATED                                                                                          5
  TCEB3C WILD-TYPE                                                                                       27
                  vv
clus               REGIONAL LYMPH NODE
  TCEB3C MUTATED                    14
  TCEB3C WILD-TYPE                  90
D61V3, multiclass
                                                                                          clus
vv                                                                                         TCEB3C MUTATED
  DISTANT METASTASIS                                                                                    4
  PRIMARY TUMOR                                                                                         0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              5
  REGIONAL LYMPH NODE                                                                                  14
                                                                                          clus
vv                                                                                         TCEB3C WILD-TYPE
  DISTANT METASTASIS                                                                                     18
  PRIMARY TUMOR                                                                                           1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               27
  REGIONAL LYMPH NODE                                                                                    90
D61V4, binary
                  cls
clus                0  1
  TCEB3C MUTATED    5 18
  TCEB3C WILD-TYPE 55 81
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TCEB3C MUTATED      5   18
  TCEB3C WILD-TYPE   55   81
        clus
vv       TCEB3C MUTATED TCEB3C WILD-TYPE
  FEMALE              5               55
  MALE               18               81
                  vv
clus                M0  M1 M1A M1B M1C
  TCEB3C MUTATED    22   0   0   0   0
  TCEB3C WILD-TYPE 116   2   1   2   2
D61V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2A N2B N2C N3 NX
  TCEB3C MUTATED   11  0   1   3   2   3   1  1  0
  TCEB3C WILD-TYPE 76  2   6  12   2   7   4 13  2
D61V6, multiclass
D61V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  TCEB3C MUTATED             0       1        0        2        4         1
  TCEB3C WILD-TYPE           3      16       10       10       14         6
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  TCEB3C MUTATED           1         1         0          1          6
  TCEB3C WILD-TYPE         8         6         7          5         11
                  vv
clus               STAGE IIIC STAGE IV
  TCEB3C MUTATED            3        0
  TCEB3C WILD-TYPE         18        5
D61V8, multiclass

Clustering(62) Variable = CYLC2 MUTATION ANALYSIS
D62V1, survival
                 sevent
clus2              0  1
  CYLC2 MUTATED   10  6
  CYLC2 WILD-TYPE 63 79
  CYLC2 MUTATED CYLC2 WILD-TYPE 
             16             142 
  CYLC2 MUTATED CYLC2 WILD-TYPE 
              6              79 
$`CYLC2 MUTATED`
TCGA-DA-A1HW TCGA-DA-A1I1 TCGA-DA-A1I7 TCGA-EE-A182 TCGA-EE-A29D TCGA-EE-A29T 
       36.03       194.83        61.18        14.70        13.97       345.96 
TCGA-EE-A2A2 TCGA-EE-A2GC TCGA-EE-A2GH TCGA-EE-A2GT TCGA-EE-A2MD TCGA-EE-A2MQ 
       24.43        43.23       182.01        19.56        47.28        43.23 
TCGA-EE-A3AA TCGA-EE-A3AD TCGA-FS-A1Z3 TCGA-FS-A1ZW 
        4.24         3.68        20.91        49.48 

$`CYLC2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HY 
      148.31        49.74         2.70         6.38        48.89       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I8 TCGA-DA-A1IA 
       20.38       176.55        35.93       107.34        53.92        65.92 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       23.44        68.09        28.60        10.49       215.44        15.68 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
       29.82         8.65        33.73        26.86         4.93       109.64 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H 
       78.87       168.26        63.32        47.84        39.62        32.19 
TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
        2.56        44.35        18.58        56.42        37.35        14.47 
TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A5 
       55.89        25.87        17.92        46.82        78.94        39.25 
TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GI TCGA-EE-A2GJ 
       58.75        47.54       314.53       135.91        22.55        89.33 
TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP 
       54.71        55.00        75.48        90.94       101.95        13.87 
TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 
       14.30        55.59        67.13        21.67       129.24        28.80 
TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI 
       19.76        61.51       103.27       103.17        16.96       204.62 
TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP 
       96.23       144.76       203.01       167.87        47.54       248.61 
TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AB TCGA-EE-A3AC 
      103.56       136.44        41.59        53.26       122.73        25.84 
TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F 
       26.73        13.81        23.47       138.77        12.59        26.37 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW 
        6.41       131.08        44.05        79.99        80.32       216.92 
TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA 
       48.59       228.59       202.62        28.08         7.76        27.68 
TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG 
       48.85       357.37        53.52        40.27        15.45         9.70 
TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ 
       32.71        47.38        23.93       101.26        74.73       133.55 
TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZY TCGA-FS-A1ZZ 
       11.41       148.77        53.16        26.56        27.06        27.02 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        0.20        76.41       120.46       117.93        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       64.41        62.76        32.48        39.58 

  CYLC2 MUTATED CYLC2 WILD-TYPE 
           3.68            0.20 
  CYLC2 MUTATED CYLC2 WILD-TYPE 
         345.96          357.37 
  CYLC2 MUTATED CYLC2 WILD-TYPE 
         39.630          48.675 
[1] "3.7 - 346.0 (39.6)" "0.2 - 357.4 (48.7)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
  "CYLC2 MUTATED" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
  "CYLC2 MUTATED" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
  "CYLC2 MUTATED" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
  "CYLC2 MUTATED" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
  "CYLC2 MUTATED" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
  "CYLC2 MUTATED" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
[1] "hr=" "1.3"
D62V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  CYLC2 MUTATED                    2             0
  CYLC2 WILD-TYPE                 20             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  CYLC2 MUTATED                                                                                          2
  CYLC2 WILD-TYPE                                                                                       30
                 vv
clus              REGIONAL LYMPH NODE
  CYLC2 MUTATED                    12
  CYLC2 WILD-TYPE                  92
D62V3, multiclass
                                                                                          clus
vv                                                                                         CYLC2 MUTATED
  DISTANT METASTASIS                                                                                   2
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             2
  REGIONAL LYMPH NODE                                                                                 12
                                                                                          clus
vv                                                                                         CYLC2 WILD-TYPE
  DISTANT METASTASIS                                                                                    20
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              30
  REGIONAL LYMPH NODE                                                                                   92
D62V4, binary
                 cls
clus               0  1
  CYLC2 MUTATED    5 11
  CYLC2 WILD-TYPE 55 88
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CYLC2 MUTATED      5   11
  CYLC2 WILD-TYPE   55   88
        clus
vv       CYLC2 MUTATED CYLC2 WILD-TYPE
  FEMALE             5              55
  MALE              11              88
                 vv
clus               M0  M1 M1A M1B M1C
  CYLC2 MUTATED    13   0   0   0   0
  CYLC2 WILD-TYPE 125   2   1   2   2
D62V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2A N2B N2C N3 NX
  CYLC2 MUTATED    4  0   1   4   1   1   0  1  1
  CYLC2 WILD-TYPE 83  2   6  11   3   9   5 13  1
D62V6, multiclass
D62V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  CYLC2 MUTATED             0       1        0        0        1         1
  CYLC2 WILD-TYPE           3      16       10       12       17         6
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  CYLC2 MUTATED           1         0         0          1          4
  CYLC2 WILD-TYPE         8         7         7          5         13
                 vv
clus              STAGE IIIC STAGE IV
  CYLC2 MUTATED            3        0
  CYLC2 WILD-TYPE         18        5
D62V8, multiclass

Clustering(63) Variable = HBG2 MUTATION ANALYSIS
D63V1, survival
                sevent
clus2             0  1
  HBG2 MUTATED    4  2
  HBG2 WILD-TYPE 69 83
  HBG2 MUTATED HBG2 WILD-TYPE 
             6            152 
  HBG2 MUTATED HBG2 WILD-TYPE 
             2             83 
$`HBG2 MUTATED`
TCGA-DA-A3F8 TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A2GM TCGA-EE-A2GO TCGA-FS-A1ZP 
       15.68        55.89        25.87        75.48       101.95        74.73 

$`HBG2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW 
      148.31        49.74         2.70         6.38        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       61.18        53.92        65.92        23.44        68.09        28.60 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 
       10.49       215.44        29.82         8.65        33.73        14.70 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A 
       26.86         4.93       109.64        78.87       168.26        63.32 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M 
       47.84        13.97        39.62        32.19         2.56        44.35 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29T TCGA-EE-A29X 
       18.58        56.42        37.35        14.47       345.96        17.92 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB 
       46.82        78.94        24.43        39.25        58.75        47.54 
TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ 
       43.23       314.53       135.91       182.01        22.55        89.33 
TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GN TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS 
       54.71        55.00        90.94        13.87        14.30        55.59 
TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 
       19.56        67.13        21.67       129.24        28.80        19.76 
TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI 
       61.51        47.28       103.27       103.17        16.96       204.62 
TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP 
       96.23       144.76       203.01       167.87        47.54       248.61 
TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA 
       43.23       103.56       136.44        41.59        53.26         4.24 
TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG 
      122.73        25.84         3.68        26.73        13.81        23.47 
TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N 
      138.77        12.59        26.37         6.41       131.08        44.05 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 
       79.99        80.32       216.92        48.59       228.59       202.62 
TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC 
       20.91        28.08         7.76        27.68        48.85       357.37 
TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ 
       53.52        40.27        15.45         9.70        32.71        47.38 
TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT 
       23.93       101.26       133.55        11.41       148.77        53.16 
TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 
       26.56        49.48        27.06        27.02         0.20        76.41 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 
      120.46       117.93        84.72        10.09        64.41        62.76 
TCGA-GN-A26A TCGA-GN-A26D 
       32.48        39.58 

  HBG2 MUTATED HBG2 WILD-TYPE 
         15.68           0.20 
  HBG2 MUTATED HBG2 WILD-TYPE 
        101.95         357.37 
  HBG2 MUTATED HBG2 WILD-TYPE 
         65.31          47.46 
[1] "15.7 - 102.0 (65.3)" "0.2 - 357.4 (47.5)" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE"   "HBG2 MUTATED" "HBG2 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE"   "HBG2 MUTATED" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"HBG2 WILD-TYPE"   "HBG2 MUTATED" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"HBG2 WILD-TYPE"   "HBG2 MUTATED" "HBG2 WILD-TYPE"   "HBG2 MUTATED" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE"   "HBG2 MUTATED" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE"   "HBG2 MUTATED" "HBG2 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE"   "HBG2 MUTATED" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"HBG2 WILD-TYPE"   "HBG2 MUTATED" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"HBG2 WILD-TYPE"   "HBG2 MUTATED" "HBG2 WILD-TYPE"   "HBG2 MUTATED" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE"   "HBG2 MUTATED" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE"   "HBG2 MUTATED" "HBG2 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE"   "HBG2 MUTATED" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"HBG2 WILD-TYPE"   "HBG2 MUTATED" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"HBG2 WILD-TYPE"   "HBG2 MUTATED" "HBG2 WILD-TYPE"   "HBG2 MUTATED" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE"   "HBG2 MUTATED" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"HBG2 WILD-TYPE" "HBG2 WILD-TYPE" 
[1] "hr=" "1.6"
D63V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  HBG2 MUTATED                    1             0
  HBG2 WILD-TYPE                 21             1
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  HBG2 MUTATED                                                                                          2
  HBG2 WILD-TYPE                                                                                       30
                vv
clus             REGIONAL LYMPH NODE
  HBG2 MUTATED                     3
  HBG2 WILD-TYPE                 101
D63V3, multiclass
                                                                                          clus
vv                                                                                         HBG2 MUTATED
  DISTANT METASTASIS                                                                                  1
  PRIMARY TUMOR                                                                                       0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            2
  REGIONAL LYMPH NODE                                                                                 3
                                                                                          clus
vv                                                                                         HBG2 WILD-TYPE
  DISTANT METASTASIS                                                                                   21
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             30
  REGIONAL LYMPH NODE                                                                                 101
D63V4, binary
                cls
clus              0  1
  HBG2 MUTATED    2  4
  HBG2 WILD-TYPE 58 95
[1] "tbl2"
                cls
clus             [,1] [,2]
  HBG2 MUTATED      2    4
  HBG2 WILD-TYPE   58   95
        clus
vv       HBG2 MUTATED HBG2 WILD-TYPE
  FEMALE            2             58
  MALE              4             95
                vv
clus              M0  M1 M1A M1B M1C
  HBG2 MUTATED     6   0   0   0   0
  HBG2 WILD-TYPE 132   2   1   2   2
D63V5, multiclass
                vv
clus             N0 N1 N1A N1B N2A N2B N2C N3 NX
  HBG2 MUTATED    4  0   0   1   0   1   0  0  0
  HBG2 WILD-TYPE 83  2   7  14   4   9   5 14  2
D63V6, multiclass
D63V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  HBG2 MUTATED             0       0        0        0        2         1
  HBG2 WILD-TYPE           3      17       10       12       16         6
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  HBG2 MUTATED           0         1         0          0          1          1
  HBG2 WILD-TYPE         9         6         7          6         16         20
                vv
clus             STAGE IV
  HBG2 MUTATED          0
  HBG2 WILD-TYPE        5
D63V8, multiclass

Clustering(64) Variable = LOC649330 MUTATION ANALYSIS
D64V1, survival
                     sevent
clus2                  0  1
  LOC649330 MUTATED    9  9
  LOC649330 WILD-TYPE 64 76
  LOC649330 MUTATED LOC649330 WILD-TYPE 
                 18                 140 
  LOC649330 MUTATED LOC649330 WILD-TYPE 
                  9                  76 
$`LOC649330 MUTATED`
TCGA-D3-A2J8 TCGA-D3-A2JF TCGA-D9-A1JW TCGA-DA-A1HV TCGA-EE-A181 TCGA-EE-A182 
       65.49        48.76         2.70        48.89        33.73        14.70 
TCGA-EE-A29V TCGA-EE-A2A1 TCGA-EE-A2GP TCGA-EE-A2GS TCGA-EE-A2MJ TCGA-EE-A2MR 
       25.87        78.94        13.87        55.59        96.23       103.56 
TCGA-EE-A2MS TCGA-EE-A3AA TCGA-EE-A3AC TCGA-ER-A19F TCGA-GN-A266 TCGA-GN-A268 
      136.44         4.24        25.84        26.37        10.09        62.76 

$`LOC649330 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC 
       43.40        23.77        11.87        12.10        58.03        71.24 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 TCGA-D9-A149 
       60.23        24.53         9.30        21.47       148.31        49.74 
TCGA-D9-A1JX TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
        6.38        36.03       117.17        20.38       194.83       176.55 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB 
       35.93       107.34        61.18        53.92        65.92        23.44 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X 
       68.09        28.60        10.49       215.44        15.68        29.82 
TCGA-EE-A17Z TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H 
        8.65        26.86         4.93       109.64        78.87       168.26 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L 
       63.32        47.84        13.97        39.62        32.19         2.56 
TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
       44.35        18.58        56.42        37.35        14.47        55.89 
TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
      345.96        17.92        46.82        24.43        39.25        58.75 
TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI 
       47.54        43.23       314.53       135.91       182.01        22.55 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO 
       89.33        54.71        55.00        75.48        90.94       101.95 
TCGA-EE-A2GR TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 
       14.30        19.56        67.13        21.67       129.24        28.80 
TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH 
       19.76        61.51        47.28       103.27       103.17        16.96 
TCGA-EE-A2MI TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP 
      204.62       144.76       203.01       167.87        47.54       248.61 
TCGA-EE-A2MQ TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AB TCGA-EE-A3AD TCGA-EE-A3AE 
       43.23        41.59        53.26       122.73         3.68        26.73 
TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19J TCGA-ER-A19L 
       13.81        23.47       138.77        12.59         6.41       131.08 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY 
       44.05        79.99        80.32       216.92        48.59       228.59 
TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB 
      202.62        20.91        28.08         7.76        27.68        48.85 
TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH 
      357.37        53.52        40.27        15.45         9.70        32.71 
TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR 
       47.38        23.93       101.26        74.73       133.55        11.41 
TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ 
      148.77        53.16        26.56        49.48        27.06        27.02 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 
        0.20        76.41       120.46       117.93        84.72        64.41 
TCGA-GN-A26A TCGA-GN-A26D 
       32.48        39.58 

  LOC649330 MUTATED LOC649330 WILD-TYPE 
                2.7                 0.2 
  LOC649330 MUTATED LOC649330 WILD-TYPE 
             136.44              357.37 
  LOC649330 MUTATED LOC649330 WILD-TYPE 
             41.245              47.540 
[1] "2.7 - 136.4 (41.2)" "0.2 - 357.4 (47.5)"
         TCGA-D3-A1Q1          TCGA-D3-A1Q5          TCGA-D3-A1Q6 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-D3-A1Q7          TCGA-D3-A1Q8          TCGA-D3-A1Q9 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-D3-A2J6          TCGA-D3-A2J8          TCGA-D3-A2J9 
"LOC649330 WILD-TYPE"   "LOC649330 MUTATED" "LOC649330 WILD-TYPE" 
         TCGA-D3-A2JD          TCGA-D3-A2JF          TCGA-D3-A2JK 
"LOC649330 WILD-TYPE"   "LOC649330 MUTATED" "LOC649330 WILD-TYPE" 
         TCGA-D3-A3C6          TCGA-D3-A3CC          TCGA-D3-A3CE 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-D3-A3CF          TCGA-D3-A3MO          TCGA-D3-A3MV 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-D9-A148          TCGA-D9-A149          TCGA-D9-A1JW 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE"   "LOC649330 MUTATED" 
         TCGA-D9-A1JX          TCGA-DA-A1HV          TCGA-DA-A1HW 
"LOC649330 WILD-TYPE"   "LOC649330 MUTATED" "LOC649330 WILD-TYPE" 
         TCGA-DA-A1HY          TCGA-DA-A1I0          TCGA-DA-A1I1 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-DA-A1I2          TCGA-DA-A1I4          TCGA-DA-A1I5 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-DA-A1I7          TCGA-DA-A1I8          TCGA-DA-A1IA 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-DA-A1IB          TCGA-DA-A1IC          TCGA-DA-A3F2 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-DA-A3F3          TCGA-DA-A3F5          TCGA-DA-A3F8 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A17X          TCGA-EE-A17Z          TCGA-EE-A181 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE"   "LOC649330 MUTATED" 
         TCGA-EE-A182          TCGA-EE-A183          TCGA-EE-A185 
  "LOC649330 MUTATED" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A20B          TCGA-EE-A20F          TCGA-EE-A20H 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A29A          TCGA-EE-A29C          TCGA-EE-A29D 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A29E          TCGA-EE-A29H          TCGA-EE-A29L 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A29M          TCGA-EE-A29N          TCGA-EE-A29P 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A29Q          TCGA-EE-A29R          TCGA-EE-A29S 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A29T          TCGA-EE-A29V          TCGA-EE-A29X 
"LOC649330 WILD-TYPE"   "LOC649330 MUTATED" "LOC649330 WILD-TYPE" 
         TCGA-EE-A2A0          TCGA-EE-A2A1          TCGA-EE-A2A2 
"LOC649330 WILD-TYPE"   "LOC649330 MUTATED" "LOC649330 WILD-TYPE" 
         TCGA-EE-A2A5          TCGA-EE-A2A6          TCGA-EE-A2GB 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A2GC          TCGA-EE-A2GD          TCGA-EE-A2GE 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A2GH          TCGA-EE-A2GI          TCGA-EE-A2GJ 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A2GK          TCGA-EE-A2GL          TCGA-EE-A2GM 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A2GN          TCGA-EE-A2GO          TCGA-EE-A2GP 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE"   "LOC649330 MUTATED" 
         TCGA-EE-A2GR          TCGA-EE-A2GS          TCGA-EE-A2GT 
"LOC649330 WILD-TYPE"   "LOC649330 MUTATED" "LOC649330 WILD-TYPE" 
         TCGA-EE-A2GU          TCGA-EE-A2M5          TCGA-EE-A2M6 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A2M7          TCGA-EE-A2M8          TCGA-EE-A2MC 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A2MD          TCGA-EE-A2ME          TCGA-EE-A2MG 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A2MH          TCGA-EE-A2MI          TCGA-EE-A2MJ 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE"   "LOC649330 MUTATED" 
         TCGA-EE-A2MK          TCGA-EE-A2ML          TCGA-EE-A2MM 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A2MN          TCGA-EE-A2MP          TCGA-EE-A2MQ 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A2MR          TCGA-EE-A2MS          TCGA-EE-A2MT 
  "LOC649330 MUTATED"   "LOC649330 MUTATED" "LOC649330 WILD-TYPE" 
         TCGA-EE-A2MU          TCGA-EE-A3AA          TCGA-EE-A3AB 
"LOC649330 WILD-TYPE"   "LOC649330 MUTATED" "LOC649330 WILD-TYPE" 
         TCGA-EE-A3AC          TCGA-EE-A3AD          TCGA-EE-A3AE 
  "LOC649330 MUTATED" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A3AF          TCGA-EE-A3AG          TCGA-EE-A3AH 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-ER-A19D          TCGA-ER-A19F          TCGA-ER-A19J 
"LOC649330 WILD-TYPE"   "LOC649330 MUTATED" "LOC649330 WILD-TYPE" 
         TCGA-ER-A19L          TCGA-ER-A19N          TCGA-ER-A1A1 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-ER-A3ET          TCGA-FS-A1YW          TCGA-FS-A1YX 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-FS-A1YY          TCGA-FS-A1Z0          TCGA-FS-A1Z3 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-FS-A1Z4          TCGA-FS-A1Z7          TCGA-FS-A1ZA 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-FS-A1ZB          TCGA-FS-A1ZC          TCGA-FS-A1ZD 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-FS-A1ZE          TCGA-FS-A1ZF          TCGA-FS-A1ZG 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-FS-A1ZH          TCGA-FS-A1ZJ          TCGA-FS-A1ZK 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-FS-A1ZM          TCGA-FS-A1ZP          TCGA-FS-A1ZQ 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-FS-A1ZR          TCGA-FS-A1ZS          TCGA-FS-A1ZT 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-FS-A1ZU          TCGA-FS-A1ZW          TCGA-FS-A1ZY 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-FS-A1ZZ          TCGA-FW-A3I3          TCGA-GN-A261 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-GN-A262          TCGA-GN-A264          TCGA-GN-A265 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-GN-A266          TCGA-GN-A267          TCGA-GN-A268 
  "LOC649330 MUTATED" "LOC649330 WILD-TYPE"   "LOC649330 MUTATED" 
         TCGA-GN-A26A          TCGA-GN-A26D 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-D3-A1Q1          TCGA-D3-A1Q5          TCGA-D3-A1Q6 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-D3-A1Q7          TCGA-D3-A1Q8          TCGA-D3-A1Q9 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-D3-A2J6          TCGA-D3-A2J8          TCGA-D3-A2J9 
"LOC649330 WILD-TYPE"   "LOC649330 MUTATED" "LOC649330 WILD-TYPE" 
         TCGA-D3-A2JD          TCGA-D3-A2JF          TCGA-D3-A2JK 
"LOC649330 WILD-TYPE"   "LOC649330 MUTATED" "LOC649330 WILD-TYPE" 
         TCGA-D3-A3C6          TCGA-D3-A3CC          TCGA-D3-A3CE 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-D3-A3CF          TCGA-D3-A3MO          TCGA-D3-A3MV 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-D9-A148          TCGA-D9-A149          TCGA-D9-A1JW 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE"   "LOC649330 MUTATED" 
         TCGA-D9-A1JX          TCGA-DA-A1HV          TCGA-DA-A1HW 
"LOC649330 WILD-TYPE"   "LOC649330 MUTATED" "LOC649330 WILD-TYPE" 
         TCGA-DA-A1HY          TCGA-DA-A1I0          TCGA-DA-A1I1 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-DA-A1I2          TCGA-DA-A1I4          TCGA-DA-A1I5 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-DA-A1I7          TCGA-DA-A1I8          TCGA-DA-A1IA 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-DA-A1IB          TCGA-DA-A1IC          TCGA-DA-A3F2 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-DA-A3F3          TCGA-DA-A3F5          TCGA-DA-A3F8 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A17X          TCGA-EE-A17Z          TCGA-EE-A181 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE"   "LOC649330 MUTATED" 
         TCGA-EE-A182          TCGA-EE-A183          TCGA-EE-A185 
  "LOC649330 MUTATED" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A20B          TCGA-EE-A20F          TCGA-EE-A20H 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A29A          TCGA-EE-A29C          TCGA-EE-A29D 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A29E          TCGA-EE-A29H          TCGA-EE-A29L 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A29M          TCGA-EE-A29N          TCGA-EE-A29P 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A29Q          TCGA-EE-A29R          TCGA-EE-A29S 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A29T          TCGA-EE-A29V          TCGA-EE-A29X 
"LOC649330 WILD-TYPE"   "LOC649330 MUTATED" "LOC649330 WILD-TYPE" 
         TCGA-EE-A2A0          TCGA-EE-A2A1          TCGA-EE-A2A2 
"LOC649330 WILD-TYPE"   "LOC649330 MUTATED" "LOC649330 WILD-TYPE" 
         TCGA-EE-A2A5          TCGA-EE-A2A6          TCGA-EE-A2GB 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A2GC          TCGA-EE-A2GD          TCGA-EE-A2GE 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A2GH          TCGA-EE-A2GI          TCGA-EE-A2GJ 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A2GK          TCGA-EE-A2GL          TCGA-EE-A2GM 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A2GN          TCGA-EE-A2GO          TCGA-EE-A2GP 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE"   "LOC649330 MUTATED" 
         TCGA-EE-A2GR          TCGA-EE-A2GS          TCGA-EE-A2GT 
"LOC649330 WILD-TYPE"   "LOC649330 MUTATED" "LOC649330 WILD-TYPE" 
         TCGA-EE-A2GU          TCGA-EE-A2M5          TCGA-EE-A2M6 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A2M7          TCGA-EE-A2M8          TCGA-EE-A2MC 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A2MD          TCGA-EE-A2ME          TCGA-EE-A2MG 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A2MH          TCGA-EE-A2MI          TCGA-EE-A2MJ 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE"   "LOC649330 MUTATED" 
         TCGA-EE-A2MK          TCGA-EE-A2ML          TCGA-EE-A2MM 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A2MN          TCGA-EE-A2MP          TCGA-EE-A2MQ 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A2MR          TCGA-EE-A2MS          TCGA-EE-A2MT 
  "LOC649330 MUTATED"   "LOC649330 MUTATED" "LOC649330 WILD-TYPE" 
         TCGA-EE-A2MU          TCGA-EE-A3AA          TCGA-EE-A3AB 
"LOC649330 WILD-TYPE"   "LOC649330 MUTATED" "LOC649330 WILD-TYPE" 
         TCGA-EE-A3AC          TCGA-EE-A3AD          TCGA-EE-A3AE 
  "LOC649330 MUTATED" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A3AF          TCGA-EE-A3AG          TCGA-EE-A3AH 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-ER-A19D          TCGA-ER-A19F          TCGA-ER-A19J 
"LOC649330 WILD-TYPE"   "LOC649330 MUTATED" "LOC649330 WILD-TYPE" 
         TCGA-ER-A19L          TCGA-ER-A19N          TCGA-ER-A1A1 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-ER-A3ET          TCGA-FS-A1YW          TCGA-FS-A1YX 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-FS-A1YY          TCGA-FS-A1Z0          TCGA-FS-A1Z3 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-FS-A1Z4          TCGA-FS-A1Z7          TCGA-FS-A1ZA 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-FS-A1ZB          TCGA-FS-A1ZC          TCGA-FS-A1ZD 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-FS-A1ZE          TCGA-FS-A1ZF          TCGA-FS-A1ZG 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-FS-A1ZH          TCGA-FS-A1ZJ          TCGA-FS-A1ZK 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-FS-A1ZM          TCGA-FS-A1ZP          TCGA-FS-A1ZQ 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-FS-A1ZR          TCGA-FS-A1ZS          TCGA-FS-A1ZT 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-FS-A1ZU          TCGA-FS-A1ZW          TCGA-FS-A1ZY 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-FS-A1ZZ          TCGA-FW-A3I3          TCGA-GN-A261 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-GN-A262          TCGA-GN-A264          TCGA-GN-A265 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-GN-A266          TCGA-GN-A267          TCGA-GN-A268 
  "LOC649330 MUTATED" "LOC649330 WILD-TYPE"   "LOC649330 MUTATED" 
         TCGA-GN-A26A          TCGA-GN-A26D 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-D3-A1Q1          TCGA-D3-A1Q5          TCGA-D3-A1Q6 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-D3-A1Q7          TCGA-D3-A1Q8          TCGA-D3-A1Q9 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-D3-A2J6          TCGA-D3-A2J8          TCGA-D3-A2J9 
"LOC649330 WILD-TYPE"   "LOC649330 MUTATED" "LOC649330 WILD-TYPE" 
         TCGA-D3-A2JD          TCGA-D3-A2JF          TCGA-D3-A2JK 
"LOC649330 WILD-TYPE"   "LOC649330 MUTATED" "LOC649330 WILD-TYPE" 
         TCGA-D3-A3C6          TCGA-D3-A3CC          TCGA-D3-A3CE 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-D3-A3CF          TCGA-D3-A3MO          TCGA-D3-A3MV 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-D9-A148          TCGA-D9-A149          TCGA-D9-A1JW 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE"   "LOC649330 MUTATED" 
         TCGA-D9-A1JX          TCGA-DA-A1HV          TCGA-DA-A1HW 
"LOC649330 WILD-TYPE"   "LOC649330 MUTATED" "LOC649330 WILD-TYPE" 
         TCGA-DA-A1HY          TCGA-DA-A1I0          TCGA-DA-A1I1 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-DA-A1I2          TCGA-DA-A1I4          TCGA-DA-A1I5 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-DA-A1I7          TCGA-DA-A1I8          TCGA-DA-A1IA 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-DA-A1IB          TCGA-DA-A1IC          TCGA-DA-A3F2 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-DA-A3F3          TCGA-DA-A3F5          TCGA-DA-A3F8 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A17X          TCGA-EE-A17Z          TCGA-EE-A181 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE"   "LOC649330 MUTATED" 
         TCGA-EE-A182          TCGA-EE-A183          TCGA-EE-A185 
  "LOC649330 MUTATED" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A20B          TCGA-EE-A20F          TCGA-EE-A20H 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A29A          TCGA-EE-A29C          TCGA-EE-A29D 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A29E          TCGA-EE-A29H          TCGA-EE-A29L 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A29M          TCGA-EE-A29N          TCGA-EE-A29P 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A29Q          TCGA-EE-A29R          TCGA-EE-A29S 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A29T          TCGA-EE-A29V          TCGA-EE-A29X 
"LOC649330 WILD-TYPE"   "LOC649330 MUTATED" "LOC649330 WILD-TYPE" 
         TCGA-EE-A2A0          TCGA-EE-A2A1          TCGA-EE-A2A2 
"LOC649330 WILD-TYPE"   "LOC649330 MUTATED" "LOC649330 WILD-TYPE" 
         TCGA-EE-A2A5          TCGA-EE-A2A6          TCGA-EE-A2GB 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A2GC          TCGA-EE-A2GD          TCGA-EE-A2GE 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A2GH          TCGA-EE-A2GI          TCGA-EE-A2GJ 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A2GK          TCGA-EE-A2GL          TCGA-EE-A2GM 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A2GN          TCGA-EE-A2GO          TCGA-EE-A2GP 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE"   "LOC649330 MUTATED" 
         TCGA-EE-A2GR          TCGA-EE-A2GS          TCGA-EE-A2GT 
"LOC649330 WILD-TYPE"   "LOC649330 MUTATED" "LOC649330 WILD-TYPE" 
         TCGA-EE-A2GU          TCGA-EE-A2M5          TCGA-EE-A2M6 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A2M7          TCGA-EE-A2M8          TCGA-EE-A2MC 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A2MD          TCGA-EE-A2ME          TCGA-EE-A2MG 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A2MH          TCGA-EE-A2MI          TCGA-EE-A2MJ 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE"   "LOC649330 MUTATED" 
         TCGA-EE-A2MK          TCGA-EE-A2ML          TCGA-EE-A2MM 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A2MN          TCGA-EE-A2MP          TCGA-EE-A2MQ 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A2MR          TCGA-EE-A2MS          TCGA-EE-A2MT 
  "LOC649330 MUTATED"   "LOC649330 MUTATED" "LOC649330 WILD-TYPE" 
         TCGA-EE-A2MU          TCGA-EE-A3AA          TCGA-EE-A3AB 
"LOC649330 WILD-TYPE"   "LOC649330 MUTATED" "LOC649330 WILD-TYPE" 
         TCGA-EE-A3AC          TCGA-EE-A3AD          TCGA-EE-A3AE 
  "LOC649330 MUTATED" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-EE-A3AF          TCGA-EE-A3AG          TCGA-EE-A3AH 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-ER-A19D          TCGA-ER-A19F          TCGA-ER-A19J 
"LOC649330 WILD-TYPE"   "LOC649330 MUTATED" "LOC649330 WILD-TYPE" 
         TCGA-ER-A19L          TCGA-ER-A19N          TCGA-ER-A1A1 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-ER-A3ET          TCGA-FS-A1YW          TCGA-FS-A1YX 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-FS-A1YY          TCGA-FS-A1Z0          TCGA-FS-A1Z3 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-FS-A1Z4          TCGA-FS-A1Z7          TCGA-FS-A1ZA 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-FS-A1ZB          TCGA-FS-A1ZC          TCGA-FS-A1ZD 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-FS-A1ZE          TCGA-FS-A1ZF          TCGA-FS-A1ZG 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-FS-A1ZH          TCGA-FS-A1ZJ          TCGA-FS-A1ZK 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-FS-A1ZM          TCGA-FS-A1ZP          TCGA-FS-A1ZQ 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-FS-A1ZR          TCGA-FS-A1ZS          TCGA-FS-A1ZT 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-FS-A1ZU          TCGA-FS-A1ZW          TCGA-FS-A1ZY 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-FS-A1ZZ          TCGA-FW-A3I3          TCGA-GN-A261 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-GN-A262          TCGA-GN-A264          TCGA-GN-A265 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
         TCGA-GN-A266          TCGA-GN-A267          TCGA-GN-A268 
  "LOC649330 MUTATED" "LOC649330 WILD-TYPE"   "LOC649330 MUTATED" 
         TCGA-GN-A26A          TCGA-GN-A26D 
"LOC649330 WILD-TYPE" "LOC649330 WILD-TYPE" 
[1] "hr=" "1.3"
D64V2, continuous
                     vv
clus                  DISTANT METASTASIS PRIMARY TUMOR
  LOC649330 MUTATED                    3             0
  LOC649330 WILD-TYPE                 19             1
                     vv
clus                  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  LOC649330 MUTATED                                                                                          2
  LOC649330 WILD-TYPE                                                                                       30
                     vv
clus                  REGIONAL LYMPH NODE
  LOC649330 MUTATED                    13
  LOC649330 WILD-TYPE                  91
D64V3, multiclass
                                                                                          clus
vv                                                                                         LOC649330 MUTATED
  DISTANT METASTASIS                                                                                       3
  PRIMARY TUMOR                                                                                            0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                 2
  REGIONAL LYMPH NODE                                                                                     13
                                                                                          clus
vv                                                                                         LOC649330 WILD-TYPE
  DISTANT METASTASIS                                                                                        19
  PRIMARY TUMOR                                                                                              1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                  30
  REGIONAL LYMPH NODE                                                                                       91
D64V4, binary
                     cls
clus                   0  1
  LOC649330 MUTATED    5 13
  LOC649330 WILD-TYPE 55 86
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  LOC649330 MUTATED      5   13
  LOC649330 WILD-TYPE   55   86
        clus
vv       LOC649330 MUTATED LOC649330 WILD-TYPE
  FEMALE                 5                  55
  MALE                  13                  86
                     vv
clus                   M0  M1 M1A M1B M1C
  LOC649330 MUTATED    15   0   0   0   0
  LOC649330 WILD-TYPE 123   2   1   2   2
D64V5, multiclass
                     vv
clus                  N0 N1 N1A N1B N2A N2B N2C N3 NX
  LOC649330 MUTATED   10  0   1   2   1   1   0  0  0
  LOC649330 WILD-TYPE 77  2   6  13   3   9   5 14  2
D64V6, multiclass
D64V7, continuous
                     vv
clus                  I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  LOC649330 MUTATED             0       1        1        3        3         0
  LOC649330 WILD-TYPE           3      16        9        9       15         7
                     vv
clus                  STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  LOC649330 MUTATED           1         0         0          0          2
  LOC649330 WILD-TYPE         8         7         7          6         15
                     vv
clus                  STAGE IIIC STAGE IV
  LOC649330 MUTATED            2        0
  LOC649330 WILD-TYPE         19        5
D64V8, multiclass

Clustering(65) Variable = PARM1 MUTATION ANALYSIS
D65V1, survival
                 sevent
clus2              0  1
  PARM1 MUTATED    3 10
  PARM1 WILD-TYPE 70 75
  PARM1 MUTATED PARM1 WILD-TYPE 
             13             145 
  PARM1 MUTATED PARM1 WILD-TYPE 
             10              75 
$`PARM1 MUTATED`
TCGA-D3-A1Q6 TCGA-D3-A2J8 TCGA-EE-A182 TCGA-EE-A185 TCGA-EE-A29D TCGA-EE-A29P 
       71.80        65.49        14.70         4.93        13.97        56.42 
TCGA-EE-A29V TCGA-EE-A2GI TCGA-FS-A1ZA TCGA-FS-A1ZC TCGA-FS-A1ZM TCGA-FS-A1ZP 
       25.87        22.55        27.68       357.37       101.26        74.73 
TCGA-GN-A266 
       10.09 

$`PARM1 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.57       112.54       121.22        28.08        31.59        43.40 
TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC 
       23.77        11.87        48.76        12.10        58.03        71.24 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 TCGA-D9-A149 
       60.23        24.53         9.30        21.47       148.31        49.74 
TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        2.70         6.38        48.89        36.03       117.17        20.38 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
      194.83       176.55        35.93       107.34        61.18        53.92 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       65.92        23.44        68.09        28.60        10.49       215.44 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A20B 
       15.68        29.82         8.65        33.73        26.86       109.64 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H 
       78.87       168.26        63.32        47.84        39.62        32.19 
TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
        2.56        44.35        18.58        37.35        14.47        55.89 
TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
      345.96        17.92        46.82        78.94        24.43        39.25 
TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH 
       58.75        47.54        43.23       314.53       135.91       182.01 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO 
       89.33        54.71        55.00        75.48        90.94       101.95 
TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 
       13.87        14.30        55.59        19.56        67.13        21.67 
TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME 
      129.24        28.80        19.76        61.51        47.28       103.27 
TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML 
      103.17        16.96       204.62        96.23       144.76       203.01 
TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS 
      167.87        47.54       248.61        43.23       103.56       136.44 
TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD 
       41.59        53.26         4.24       122.73        25.84         3.68 
TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F 
       26.73        13.81        23.47       138.77        12.59        26.37 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW 
        6.41       131.08        44.05        79.99        80.32       216.92 
TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 
       48.59       228.59       202.62        20.91        28.08         7.76 
TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH 
       48.85        53.52        40.27        15.45         9.70        32.71 
TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT 
       47.38        23.93       133.55        11.41       148.77        53.16 
TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 
       26.56        49.48        27.06        27.02         0.20        76.41 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
      120.46       117.93        84.72        64.41        62.76        32.48 
TCGA-GN-A26D 
       39.58 

  PARM1 MUTATED PARM1 WILD-TYPE 
           4.93            0.20 
  PARM1 MUTATED PARM1 WILD-TYPE 
         357.37          345.96 
  PARM1 MUTATED PARM1 WILD-TYPE 
          27.68           47.54 
[1] "4.9 - 357.4 (27.7)" "0.2 - 346.0 (47.5)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
  "PARM1 MUTATED" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
  "PARM1 MUTATED" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
  "PARM1 MUTATED" "PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED"   "PARM1 MUTATED" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
  "PARM1 MUTATED" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
  "PARM1 MUTATED" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
  "PARM1 MUTATED" "PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED"   "PARM1 MUTATED" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
  "PARM1 MUTATED" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
  "PARM1 MUTATED" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
  "PARM1 MUTATED" "PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE"   "PARM1 MUTATED"   "PARM1 MUTATED" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"PARM1 WILD-TYPE"   "PARM1 MUTATED" "PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"PARM1 WILD-TYPE" "PARM1 WILD-TYPE" 
[1] "hr=" "1.5"
D65V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  PARM1 MUTATED                    4             0
  PARM1 WILD-TYPE                 18             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  PARM1 MUTATED                                                                                          3
  PARM1 WILD-TYPE                                                                                       29
                 vv
clus              REGIONAL LYMPH NODE
  PARM1 MUTATED                     6
  PARM1 WILD-TYPE                  98
D65V3, multiclass
                                                                                          clus
vv                                                                                         PARM1 MUTATED
  DISTANT METASTASIS                                                                                   4
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             3
  REGIONAL LYMPH NODE                                                                                  6
                                                                                          clus
vv                                                                                         PARM1 WILD-TYPE
  DISTANT METASTASIS                                                                                    18
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              29
  REGIONAL LYMPH NODE                                                                                   98
D65V4, binary
                 cls
clus               0  1
  PARM1 MUTATED    4  9
  PARM1 WILD-TYPE 56 90
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PARM1 MUTATED      4    9
  PARM1 WILD-TYPE   56   90
        clus
vv       PARM1 MUTATED PARM1 WILD-TYPE
  FEMALE             4              56
  MALE               9              90
                 vv
clus               M0  M1 M1A M1B M1C
  PARM1 MUTATED    12   0   0   0   0
  PARM1 WILD-TYPE 126   2   1   2   2
D65V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2A N2B N2C N3 NX
  PARM1 MUTATED    5  0   0   4   0   0   2  1  0
  PARM1 WILD-TYPE 82  2   7  11   4  10   3 13  2
D65V6, multiclass
D65V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  PARM1 MUTATED             1       0        1        1        1         0
  PARM1 WILD-TYPE           2      17        9       11       17         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  PARM1 MUTATED           0         1         2          0          1
  PARM1 WILD-TYPE         9         6         5          6         16
                 vv
clus              STAGE IIIC STAGE IV
  PARM1 MUTATED            4        0
  PARM1 WILD-TYPE         17        5
D65V8, multiclass

Clustering(66) Variable = CCK MUTATION ANALYSIS
D66V1, survival
               sevent
clus2            0  1
  CCK MUTATED    5  0
  CCK WILD-TYPE 68 85
  CCK MUTATED CCK WILD-TYPE 
            5           153 
  CCK MUTATED CCK WILD-TYPE 
            0            85 
$`CCK MUTATED`
TCGA-EE-A29E TCGA-EE-A29R TCGA-EE-A2GJ TCGA-FS-A1ZT TCGA-GN-A265 
       39.62        14.47        89.33        53.16        84.72 

$`CCK WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW 
      148.31        49.74         2.70         6.38        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       61.18        53.92        65.92        23.44        68.09        28.60 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
       10.49       215.44        15.68        29.82         8.65        33.73 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H 
       14.70        26.86         4.93       109.64        78.87       168.26 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M 
       63.32        47.84        13.97        32.19         2.56        44.35 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V 
       18.58        56.42        37.35        55.89       345.96        25.87 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
       17.92        46.82        78.94        24.43        39.25        58.75 
TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI 
       47.54        43.23       314.53       135.91       182.01        22.55 
TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP 
       54.71        55.00        75.48        90.94       101.95        13.87 
TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 
       14.30        55.59        19.56        67.13        21.67       129.24 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG 
       28.80        19.76        61.51        47.28       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM 
       16.96       204.62        96.23       144.76       203.01       167.87 
TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT 
       47.54       248.61        43.23       103.56       136.44        41.59 
TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE 
       53.26         4.24       122.73        25.84         3.68        26.73 
TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       13.81        23.47       138.77        12.59        26.37         6.41 
TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX 
      131.08        44.05        79.99        80.32       216.92        48.59 
TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA 
      228.59       202.62        20.91        28.08         7.76        27.68 
TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG 
       48.85       357.37        53.52        40.27        15.45         9.70 
TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ 
       32.71        47.38        23.93       101.26        74.73       133.55 
TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ 
       11.41       148.77        26.56        49.48        27.06        27.02 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A266 TCGA-GN-A267 
        0.20        76.41       120.46       117.93        10.09        64.41 
TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       62.76        32.48        39.58 

  CCK MUTATED CCK WILD-TYPE 
        14.47          0.20 
  CCK MUTATED CCK WILD-TYPE 
        89.33        357.37 
  CCK MUTATED CCK WILD-TYPE 
        53.16         47.54 
[1] "14.5 - 89.3 (53.2)" "0.2 - 357.4 (47.5)"
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A148    TCGA-D9-A149 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-D9-A1JW    TCGA-D9-A1JX    TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-DA-A1I0    TCGA-DA-A1I1    TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-DA-A1I7    TCGA-DA-A1I8    TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-DA-A3F2    TCGA-DA-A3F3    TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A17Z    TCGA-EE-A181    TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A20B    TCGA-EE-A20F    TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A29D    TCGA-EE-A29E    TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M 
"CCK WILD-TYPE"   "CCK MUTATED" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A29N    TCGA-EE-A29P    TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE"   "CCK MUTATED" "CCK WILD-TYPE" 
   TCGA-EE-A29T    TCGA-EE-A29V    TCGA-EE-A29X    TCGA-EE-A2A0    TCGA-EE-A2A1 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6    TCGA-EE-A2GB    TCGA-EE-A2GC 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A2GD    TCGA-EE-A2GE    TCGA-EE-A2GH    TCGA-EE-A2GI    TCGA-EE-A2GJ 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE"   "CCK MUTATED" 
   TCGA-EE-A2GK    TCGA-EE-A2GL    TCGA-EE-A2GM    TCGA-EE-A2GN    TCGA-EE-A2GO 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A2GP    TCGA-EE-A2GR    TCGA-EE-A2GS    TCGA-EE-A2GT    TCGA-EE-A2GU 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A2M5    TCGA-EE-A2M6    TCGA-EE-A2M7    TCGA-EE-A2M8    TCGA-EE-A2MC 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A2MD    TCGA-EE-A2ME    TCGA-EE-A2MG    TCGA-EE-A2MH    TCGA-EE-A2MI 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A2MJ    TCGA-EE-A2MK    TCGA-EE-A2ML    TCGA-EE-A2MM    TCGA-EE-A2MN 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A2MP    TCGA-EE-A2MQ    TCGA-EE-A2MR    TCGA-EE-A2MS    TCGA-EE-A2MT 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A2MU    TCGA-EE-A3AA    TCGA-EE-A3AB    TCGA-EE-A3AC    TCGA-EE-A3AD 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A3AE    TCGA-EE-A3AF    TCGA-EE-A3AG    TCGA-EE-A3AH    TCGA-ER-A19D 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19N    TCGA-ER-A1A1 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-ER-A3ET    TCGA-FS-A1YW    TCGA-FS-A1YX    TCGA-FS-A1YY    TCGA-FS-A1Z0 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-FS-A1Z3    TCGA-FS-A1Z4    TCGA-FS-A1Z7    TCGA-FS-A1ZA    TCGA-FS-A1ZB 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-FS-A1ZC    TCGA-FS-A1ZD    TCGA-FS-A1ZE    TCGA-FS-A1ZF    TCGA-FS-A1ZG 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-FS-A1ZH    TCGA-FS-A1ZJ    TCGA-FS-A1ZK    TCGA-FS-A1ZM    TCGA-FS-A1ZP 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-FS-A1ZQ    TCGA-FS-A1ZR    TCGA-FS-A1ZS    TCGA-FS-A1ZT    TCGA-FS-A1ZU 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE"   "CCK MUTATED" "CCK WILD-TYPE" 
   TCGA-FS-A1ZW    TCGA-FS-A1ZY    TCGA-FS-A1ZZ    TCGA-FW-A3I3    TCGA-GN-A261 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265    TCGA-GN-A266    TCGA-GN-A267 
"CCK WILD-TYPE" "CCK WILD-TYPE"   "CCK MUTATED" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A148    TCGA-D9-A149 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-D9-A1JW    TCGA-D9-A1JX    TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-DA-A1I0    TCGA-DA-A1I1    TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-DA-A1I7    TCGA-DA-A1I8    TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-DA-A3F2    TCGA-DA-A3F3    TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A17Z    TCGA-EE-A181    TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A20B    TCGA-EE-A20F    TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A29D    TCGA-EE-A29E    TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M 
"CCK WILD-TYPE"   "CCK MUTATED" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A29N    TCGA-EE-A29P    TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE"   "CCK MUTATED" "CCK WILD-TYPE" 
   TCGA-EE-A29T    TCGA-EE-A29V    TCGA-EE-A29X    TCGA-EE-A2A0    TCGA-EE-A2A1 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6    TCGA-EE-A2GB    TCGA-EE-A2GC 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A2GD    TCGA-EE-A2GE    TCGA-EE-A2GH    TCGA-EE-A2GI    TCGA-EE-A2GJ 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE"   "CCK MUTATED" 
   TCGA-EE-A2GK    TCGA-EE-A2GL    TCGA-EE-A2GM    TCGA-EE-A2GN    TCGA-EE-A2GO 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A2GP    TCGA-EE-A2GR    TCGA-EE-A2GS    TCGA-EE-A2GT    TCGA-EE-A2GU 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A2M5    TCGA-EE-A2M6    TCGA-EE-A2M7    TCGA-EE-A2M8    TCGA-EE-A2MC 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A2MD    TCGA-EE-A2ME    TCGA-EE-A2MG    TCGA-EE-A2MH    TCGA-EE-A2MI 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A2MJ    TCGA-EE-A2MK    TCGA-EE-A2ML    TCGA-EE-A2MM    TCGA-EE-A2MN 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A2MP    TCGA-EE-A2MQ    TCGA-EE-A2MR    TCGA-EE-A2MS    TCGA-EE-A2MT 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A2MU    TCGA-EE-A3AA    TCGA-EE-A3AB    TCGA-EE-A3AC    TCGA-EE-A3AD 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A3AE    TCGA-EE-A3AF    TCGA-EE-A3AG    TCGA-EE-A3AH    TCGA-ER-A19D 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19N    TCGA-ER-A1A1 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-ER-A3ET    TCGA-FS-A1YW    TCGA-FS-A1YX    TCGA-FS-A1YY    TCGA-FS-A1Z0 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-FS-A1Z3    TCGA-FS-A1Z4    TCGA-FS-A1Z7    TCGA-FS-A1ZA    TCGA-FS-A1ZB 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-FS-A1ZC    TCGA-FS-A1ZD    TCGA-FS-A1ZE    TCGA-FS-A1ZF    TCGA-FS-A1ZG 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-FS-A1ZH    TCGA-FS-A1ZJ    TCGA-FS-A1ZK    TCGA-FS-A1ZM    TCGA-FS-A1ZP 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-FS-A1ZQ    TCGA-FS-A1ZR    TCGA-FS-A1ZS    TCGA-FS-A1ZT    TCGA-FS-A1ZU 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE"   "CCK MUTATED" "CCK WILD-TYPE" 
   TCGA-FS-A1ZW    TCGA-FS-A1ZY    TCGA-FS-A1ZZ    TCGA-FW-A3I3    TCGA-GN-A261 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265    TCGA-GN-A266    TCGA-GN-A267 
"CCK WILD-TYPE" "CCK WILD-TYPE"   "CCK MUTATED" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A148    TCGA-D9-A149 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-D9-A1JW    TCGA-D9-A1JX    TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-DA-A1I0    TCGA-DA-A1I1    TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-DA-A1I7    TCGA-DA-A1I8    TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-DA-A3F2    TCGA-DA-A3F3    TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A17Z    TCGA-EE-A181    TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A20B    TCGA-EE-A20F    TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A29D    TCGA-EE-A29E    TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M 
"CCK WILD-TYPE"   "CCK MUTATED" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A29N    TCGA-EE-A29P    TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE"   "CCK MUTATED" "CCK WILD-TYPE" 
   TCGA-EE-A29T    TCGA-EE-A29V    TCGA-EE-A29X    TCGA-EE-A2A0    TCGA-EE-A2A1 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6    TCGA-EE-A2GB    TCGA-EE-A2GC 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A2GD    TCGA-EE-A2GE    TCGA-EE-A2GH    TCGA-EE-A2GI    TCGA-EE-A2GJ 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE"   "CCK MUTATED" 
   TCGA-EE-A2GK    TCGA-EE-A2GL    TCGA-EE-A2GM    TCGA-EE-A2GN    TCGA-EE-A2GO 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A2GP    TCGA-EE-A2GR    TCGA-EE-A2GS    TCGA-EE-A2GT    TCGA-EE-A2GU 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A2M5    TCGA-EE-A2M6    TCGA-EE-A2M7    TCGA-EE-A2M8    TCGA-EE-A2MC 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A2MD    TCGA-EE-A2ME    TCGA-EE-A2MG    TCGA-EE-A2MH    TCGA-EE-A2MI 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A2MJ    TCGA-EE-A2MK    TCGA-EE-A2ML    TCGA-EE-A2MM    TCGA-EE-A2MN 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A2MP    TCGA-EE-A2MQ    TCGA-EE-A2MR    TCGA-EE-A2MS    TCGA-EE-A2MT 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A2MU    TCGA-EE-A3AA    TCGA-EE-A3AB    TCGA-EE-A3AC    TCGA-EE-A3AD 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-EE-A3AE    TCGA-EE-A3AF    TCGA-EE-A3AG    TCGA-EE-A3AH    TCGA-ER-A19D 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19N    TCGA-ER-A1A1 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-ER-A3ET    TCGA-FS-A1YW    TCGA-FS-A1YX    TCGA-FS-A1YY    TCGA-FS-A1Z0 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-FS-A1Z3    TCGA-FS-A1Z4    TCGA-FS-A1Z7    TCGA-FS-A1ZA    TCGA-FS-A1ZB 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-FS-A1ZC    TCGA-FS-A1ZD    TCGA-FS-A1ZE    TCGA-FS-A1ZF    TCGA-FS-A1ZG 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-FS-A1ZH    TCGA-FS-A1ZJ    TCGA-FS-A1ZK    TCGA-FS-A1ZM    TCGA-FS-A1ZP 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-FS-A1ZQ    TCGA-FS-A1ZR    TCGA-FS-A1ZS    TCGA-FS-A1ZT    TCGA-FS-A1ZU 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE"   "CCK MUTATED" "CCK WILD-TYPE" 
   TCGA-FS-A1ZW    TCGA-FS-A1ZY    TCGA-FS-A1ZZ    TCGA-FW-A3I3    TCGA-GN-A261 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265    TCGA-GN-A266    TCGA-GN-A267 
"CCK WILD-TYPE" "CCK WILD-TYPE"   "CCK MUTATED" "CCK WILD-TYPE" "CCK WILD-TYPE" 
   TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
"CCK WILD-TYPE" "CCK WILD-TYPE" "CCK WILD-TYPE" 
[1] "hr="     "2.6e+07"
D66V2, continuous
               vv
clus            DISTANT METASTASIS PRIMARY TUMOR
  CCK MUTATED                    1             0
  CCK WILD-TYPE                 21             1
               vv
clus            REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  CCK MUTATED                                                                                          0
  CCK WILD-TYPE                                                                                       32
               vv
clus            REGIONAL LYMPH NODE
  CCK MUTATED                     4
  CCK WILD-TYPE                 100
D66V3, multiclass
                                                                                          clus
vv                                                                                         CCK MUTATED
  DISTANT METASTASIS                                                                                 1
  PRIMARY TUMOR                                                                                      0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)           0
  REGIONAL LYMPH NODE                                                                                4
                                                                                          clus
vv                                                                                         CCK WILD-TYPE
  DISTANT METASTASIS                                                                                  21
  PRIMARY TUMOR                                                                                        1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            32
  REGIONAL LYMPH NODE                                                                                100
D66V4, binary
               cls
clus             0  1
  CCK MUTATED    1  4
  CCK WILD-TYPE 59 95
[1] "tbl2"
               cls
clus            [,1] [,2]
  CCK MUTATED      1    4
  CCK WILD-TYPE   59   95
        clus
vv       CCK MUTATED CCK WILD-TYPE
  FEMALE           1            59
  MALE             4            95
               vv
clus             M0  M1 M1A M1B M1C
  CCK MUTATED     4   0   0   0   0
  CCK WILD-TYPE 134   2   1   2   2
D66V5, multiclass
               vv
clus            N0 N1 N1A N1B N2A N2B N2C N3 NX
  CCK MUTATED    1  0   0   3   0   0   0  0  0
  CCK WILD-TYPE 86  2   7  12   4  10   5 14  2
D66V6, multiclass
D66V7, continuous
               vv
clus            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  CCK MUTATED             0       0        1        0        0         0
  CCK WILD-TYPE           3      17        9       12       18         7
               vv
clus            STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  CCK MUTATED           0         0         1          0          1          1
  CCK WILD-TYPE         9         7         6          6         16         20
               vv
clus            STAGE IV
  CCK MUTATED          0
  CCK WILD-TYPE        5
D66V8, multiclass

Clustering(67) Variable = ZFP106 MUTATION ANALYSIS
D67V1, survival
                  sevent
clus2               0  1
  ZFP106 MUTATED    4  2
  ZFP106 WILD-TYPE 69 83
  ZFP106 MUTATED ZFP106 WILD-TYPE 
               6              152 
  ZFP106 MUTATED ZFP106 WILD-TYPE 
               2               83 
$`ZFP106 MUTATED`
TCGA-D3-A2JF TCGA-EE-A29L TCGA-EE-A2GR TCGA-EE-A2MJ TCGA-EE-A2MS TCGA-FS-A1ZM 
       48.76         2.56        14.30        96.23       136.44       101.26 

$`ZFP106 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       43.40        65.49        23.77        11.87        12.10        58.03 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
       71.24        60.23        24.53         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
       49.74         2.70         6.38        48.89        36.03       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
       20.38       194.83       176.55        35.93       107.34        61.18 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       53.92        65.92        23.44        68.09        28.60        10.49 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 
      215.44        15.68        29.82         8.65        33.73        14.70 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A 
       26.86         4.93       109.64        78.87       168.26        63.32 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29N 
       47.84        13.97        39.62        32.19        44.35        18.58 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V 
       56.42        37.35        14.47        55.89       345.96        25.87 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
       17.92        46.82        78.94        24.43        39.25        58.75 
TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI 
       47.54        43.23       314.53       135.91       182.01        22.55 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO 
       89.33        54.71        55.00        75.48        90.94       101.95 
TCGA-EE-A2GP TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 
       13.87        55.59        19.56        67.13        21.67       129.24 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG 
       28.80        19.76        61.51        47.28       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN 
       16.96       204.62       144.76       203.01       167.87        47.54 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA 
      248.61        43.23       103.56        41.59        53.26         4.24 
TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG 
      122.73        25.84         3.68        26.73        13.81        23.47 
TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N 
      138.77        12.59        26.37         6.41       131.08        44.05 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 
       79.99        80.32       216.92        48.59       228.59       202.62 
TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC 
       20.91        28.08         7.76        27.68        48.85       357.37 
TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ 
       53.52        40.27        15.45         9.70        32.71        47.38 
TCGA-FS-A1ZK TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT 
       23.93        74.73       133.55        11.41       148.77        53.16 
TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 
       26.56        49.48        27.06        27.02         0.20        76.41 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 
      120.46       117.93        84.72        10.09        64.41        62.76 
TCGA-GN-A26A TCGA-GN-A26D 
       32.48        39.58 

  ZFP106 MUTATED ZFP106 WILD-TYPE 
            2.56             0.20 
  ZFP106 MUTATED ZFP106 WILD-TYPE 
          136.44           357.37 
  ZFP106 MUTATED ZFP106 WILD-TYPE 
          72.495           47.460 
[1] "2.6 - 136.4 (72.5)" "0.2 - 357.4 (47.5)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE"   "ZFP106 MUTATED" "ZFP106 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"ZFP106 WILD-TYPE"   "ZFP106 MUTATED" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"ZFP106 WILD-TYPE"   "ZFP106 MUTATED" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE"   "ZFP106 MUTATED" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE"   "ZFP106 MUTATED" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE"   "ZFP106 MUTATED" "ZFP106 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE"   "ZFP106 MUTATED" "ZFP106 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"ZFP106 WILD-TYPE"   "ZFP106 MUTATED" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"ZFP106 WILD-TYPE"   "ZFP106 MUTATED" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE"   "ZFP106 MUTATED" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE"   "ZFP106 MUTATED" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE"   "ZFP106 MUTATED" "ZFP106 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE"   "ZFP106 MUTATED" "ZFP106 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"ZFP106 WILD-TYPE"   "ZFP106 MUTATED" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"ZFP106 WILD-TYPE"   "ZFP106 MUTATED" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE"   "ZFP106 MUTATED" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE"   "ZFP106 MUTATED" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE"   "ZFP106 MUTATED" "ZFP106 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"ZFP106 WILD-TYPE" "ZFP106 WILD-TYPE" 
[1] "hr=" "1.6"
D67V2, continuous
                  vv
clus               DISTANT METASTASIS PRIMARY TUMOR
  ZFP106 MUTATED                    1             0
  ZFP106 WILD-TYPE                 21             1
                  vv
clus               REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  ZFP106 MUTATED                                                                                          2
  ZFP106 WILD-TYPE                                                                                       30
                  vv
clus               REGIONAL LYMPH NODE
  ZFP106 MUTATED                     3
  ZFP106 WILD-TYPE                 101
D67V3, multiclass
                                                                                          clus
vv                                                                                         ZFP106 MUTATED
  DISTANT METASTASIS                                                                                    1
  PRIMARY TUMOR                                                                                         0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              2
  REGIONAL LYMPH NODE                                                                                   3
                                                                                          clus
vv                                                                                         ZFP106 WILD-TYPE
  DISTANT METASTASIS                                                                                     21
  PRIMARY TUMOR                                                                                           1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               30
  REGIONAL LYMPH NODE                                                                                   101
D67V4, binary
                  cls
clus                0  1
  ZFP106 MUTATED    0  6
  ZFP106 WILD-TYPE 60 93
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZFP106 MUTATED      0    6
  ZFP106 WILD-TYPE   60   93
        clus
vv       ZFP106 MUTATED ZFP106 WILD-TYPE
  FEMALE              0               60
  MALE                6               93
                  vv
clus                M0  M1 M1A M1B M1C
  ZFP106 MUTATED     6   0   0   0   0
  ZFP106 WILD-TYPE 132   2   1   2   2
D67V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2A N2B N2C N3 NX
  ZFP106 MUTATED    4  0   0   0   0   0   1  1  0
  ZFP106 WILD-TYPE 83  2   7  15   4  10   4 13  2
D67V6, multiclass
D67V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  ZFP106 MUTATED             0       0        1        0        3         0
  ZFP106 WILD-TYPE           3      17        9       12       15         7
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  ZFP106 MUTATED           0         0         1          0          0
  ZFP106 WILD-TYPE         9         7         6          6         17
                  vv
clus               STAGE IIIC STAGE IV
  ZFP106 MUTATED            1        0
  ZFP106 WILD-TYPE         20        5
D67V8, multiclass

Clustering(68) Variable = UGT2B15 MUTATION ANALYSIS
D68V1, survival
                   sevent
clus2                0  1
  UGT2B15 MUTATED    7  8
  UGT2B15 WILD-TYPE 66 77
  UGT2B15 MUTATED UGT2B15 WILD-TYPE 
               15               143 
  UGT2B15 MUTATED UGT2B15 WILD-TYPE 
                8                77 
$`UGT2B15 MUTATED`
TCGA-D3-A1Q8 TCGA-DA-A1HY TCGA-DA-A1I5 TCGA-DA-A1IC TCGA-EE-A185 TCGA-EE-A20H 
       28.08       117.17       107.34        68.09         4.93       168.26 
TCGA-EE-A29D TCGA-EE-A2GD TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2MG TCGA-EE-A2MJ 
       13.97       314.53        21.67       129.24       103.17        96.23 
TCGA-EE-A2MR TCGA-EE-A3AC TCGA-EE-A3AD 
      103.56        25.84         3.68 

$`UGT2B15 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.57       112.54        71.80       121.22        31.59        43.40 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 
       65.49        23.77        11.87        48.76        12.10        58.03 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
       71.24        60.23        24.53         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I0 
       49.74         2.70         6.38        48.89        36.03        20.38 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
      194.83       176.55        35.93        61.18        53.92        65.92 
TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X 
       23.44        28.60        10.49       215.44        15.68        29.82 
TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A20B TCGA-EE-A20F 
        8.65        33.73        14.70        26.86       109.64        78.87 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M 
       63.32        47.84        39.62        32.19         2.56        44.35 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T 
       18.58        56.42        37.35        14.47        55.89       345.96 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
       25.87        17.92        46.82        78.94        24.43        39.25 
TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI 
       58.75        47.54        43.23       135.91       182.01        22.55 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO 
       89.33        54.71        55.00        75.48        90.94       101.95 
TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M7 
       13.87        14.30        55.59        19.56        67.13        28.80 
TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MH TCGA-EE-A2MI 
       19.76        61.51        47.28       103.27        16.96       204.62 
TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ 
      144.76       203.01       167.87        47.54       248.61        43.23 
TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AE 
      136.44        41.59        53.26         4.24       122.73        26.73 
TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       13.81        23.47       138.77        12.59        26.37         6.41 
TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX 
      131.08        44.05        79.99        80.32       216.92        48.59 
TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA 
      228.59       202.62        20.91        28.08         7.76        27.68 
TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG 
       48.85       357.37        53.52        40.27        15.45         9.70 
TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ 
       32.71        47.38        23.93       101.26        74.73       133.55 
TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY 
       11.41       148.77        53.16        26.56        49.48        27.06 
TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
       27.02         0.20        76.41       120.46       117.93        84.72 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       10.09        64.41        62.76        32.48        39.58 

  UGT2B15 MUTATED UGT2B15 WILD-TYPE 
             3.68              0.20 
  UGT2B15 MUTATED UGT2B15 WILD-TYPE 
           314.53            357.37 
  UGT2B15 MUTATED UGT2B15 WILD-TYPE 
            96.23             47.38 
[1] "3.7 - 314.5 (96.2)" "0.2 - 357.4 (47.4)"
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
  "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
  "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"UGT2B15 WILD-TYPE"   "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE"   "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
  "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE"   "UGT2B15 MUTATED" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE"   "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE"   "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"UGT2B15 WILD-TYPE"   "UGT2B15 MUTATED"   "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
  "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE"   "UGT2B15 MUTATED" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE"   "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
  "UGT2B15 MUTATED"   "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
  "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
  "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"UGT2B15 WILD-TYPE"   "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE"   "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
  "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE"   "UGT2B15 MUTATED" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE"   "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE"   "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"UGT2B15 WILD-TYPE"   "UGT2B15 MUTATED"   "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
  "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE"   "UGT2B15 MUTATED" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE"   "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
  "UGT2B15 MUTATED"   "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
  "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
  "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"UGT2B15 WILD-TYPE"   "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE"   "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
  "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE"   "UGT2B15 MUTATED" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE"   "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE"   "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"UGT2B15 WILD-TYPE"   "UGT2B15 MUTATED"   "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
  "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE"   "UGT2B15 MUTATED" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE"   "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
  "UGT2B15 MUTATED"   "UGT2B15 MUTATED" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"UGT2B15 WILD-TYPE" "UGT2B15 WILD-TYPE" 
[1] "hr=" "1.2"
D68V2, continuous
                   vv
clus                DISTANT METASTASIS PRIMARY TUMOR
  UGT2B15 MUTATED                    2             0
  UGT2B15 WILD-TYPE                 20             1
                   vv
clus                REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  UGT2B15 MUTATED                                                                                          2
  UGT2B15 WILD-TYPE                                                                                       30
                   vv
clus                REGIONAL LYMPH NODE
  UGT2B15 MUTATED                    11
  UGT2B15 WILD-TYPE                  93
D68V3, multiclass
                                                                                          clus
vv                                                                                         UGT2B15 MUTATED
  DISTANT METASTASIS                                                                                     2
  PRIMARY TUMOR                                                                                          0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               2
  REGIONAL LYMPH NODE                                                                                   11
                                                                                          clus
vv                                                                                         UGT2B15 WILD-TYPE
  DISTANT METASTASIS                                                                                      20
  PRIMARY TUMOR                                                                                            1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                30
  REGIONAL LYMPH NODE                                                                                     93
D68V4, binary
                   cls
clus                 0  1
  UGT2B15 MUTATED    3 12
  UGT2B15 WILD-TYPE 57 87
[1] "tbl2"
                   cls
clus                [,1] [,2]
  UGT2B15 MUTATED      3   12
  UGT2B15 WILD-TYPE   57   87
        clus
vv       UGT2B15 MUTATED UGT2B15 WILD-TYPE
  FEMALE               3                57
  MALE                12                87
                   vv
clus                 M0  M1 M1A M1B M1C
  UGT2B15 MUTATED    11   0   0   1   1
  UGT2B15 WILD-TYPE 127   2   1   1   1
D68V5, multiclass
                   vv
clus                N0 N1 N1A N1B N2A N2B N2C N3 NX
  UGT2B15 MUTATED    8  0   0   1   0   0   1  3  0
  UGT2B15 WILD-TYPE 79  2   7  14   4  10   4 11  2
D68V6, multiclass
D68V7, continuous
                   vv
clus                I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  UGT2B15 MUTATED             0       5        0        0        1         0
  UGT2B15 WILD-TYPE           3      12       10       12       17         7
                   vv
clus                STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  UGT2B15 MUTATED           1         0         0          0          1
  UGT2B15 WILD-TYPE         8         7         7          6         16
                   vv
clus                STAGE IIIC STAGE IV
  UGT2B15 MUTATED            3        2
  UGT2B15 WILD-TYPE         18        3
D68V8, multiclass

Clustering(69) Variable = DSG1 MUTATION ANALYSIS
D69V1, survival
                sevent
clus2             0  1
  DSG1 MUTATED   11 13
  DSG1 WILD-TYPE 62 72
  DSG1 MUTATED DSG1 WILD-TYPE 
            24            134 
  DSG1 MUTATED DSG1 WILD-TYPE 
            13             72 
$`DSG1 MUTATED`
TCGA-D3-A1Q6 TCGA-D3-A2JK TCGA-D3-A3MV TCGA-DA-A1HV TCGA-DA-A3F8 TCGA-EE-A181 
       71.80        12.10        21.47        48.89        15.68        33.73 
TCGA-EE-A182 TCGA-EE-A185 TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A2A5 
       14.70         4.93        47.84        13.97        39.62        39.25 
TCGA-EE-A2GC TCGA-EE-A2GO TCGA-EE-A2M5 TCGA-EE-A2MJ TCGA-EE-A2MS TCGA-EE-A3AA 
       43.23       101.95        21.67        96.23       136.44         4.24 
TCGA-EE-A3AE TCGA-FS-A1ZA TCGA-FS-A1ZP TCGA-FS-A1ZW TCGA-GN-A266 TCGA-GN-A26A 
       26.73        27.68        74.73        49.48        10.09        32.48 

$`DSG1 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.57       112.54       121.22        28.08        31.59        43.40 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A3C6 TCGA-D3-A3CC 
       65.49        23.77        11.87        48.76        58.03        71.24 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW 
       60.23        24.53         9.30       148.31        49.74         2.70 
TCGA-D9-A1JX TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
        6.38        36.03       117.17        20.38       194.83       176.55 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB 
       35.93       107.34        61.18        53.92        65.92        23.44 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A17X TCGA-EE-A17Z 
       68.09        28.60        10.49       215.44        29.82         8.65 
TCGA-EE-A183 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29H 
       26.86       109.64        78.87       168.26        63.32        32.19 
TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
        2.56        44.35        18.58        56.42        37.35        14.47 
TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
       55.89       345.96        25.87        17.92        46.82        78.94 
TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH 
       24.43        58.75        47.54       314.53       135.91       182.01 
TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN 
       22.55        89.33        54.71        55.00        75.48        90.94 
TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M6 
       13.87        14.30        55.59        19.56        67.13       129.24 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG 
       28.80        19.76        61.51        47.28       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN 
       16.96       204.62       144.76       203.01       167.87        47.54 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AB 
      248.61        43.23       103.56        41.59        53.26       122.73 
TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D 
       25.84         3.68        13.81        23.47       138.77        12.59 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
       26.37         6.41       131.08        44.05        79.99        80.32 
TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 
      216.92        48.59       228.59       202.62        20.91        28.08 
TCGA-FS-A1Z7 TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF 
        7.76        48.85       357.37        53.52        40.27        15.45 
TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZQ 
        9.70        32.71        47.38        23.93       101.26       133.55 
TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZY TCGA-FS-A1ZZ 
       11.41       148.77        53.16        26.56        27.06        27.02 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 
        0.20        76.41       120.46       117.93        84.72        64.41 
TCGA-GN-A268 TCGA-GN-A26D 
       62.76        39.58 

  DSG1 MUTATED DSG1 WILD-TYPE 
          4.24           0.20 
  DSG1 MUTATED DSG1 WILD-TYPE 
        136.44         357.37 
  DSG1 MUTATED DSG1 WILD-TYPE 
        33.105         49.295 
[1] "4.2 - 136.4 (33.1)" "0.2 - 357.4 (49.3)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE"   "DSG1 MUTATED" "DSG1 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE"   "DSG1 MUTATED" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"DSG1 WILD-TYPE"   "DSG1 MUTATED" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE"   "DSG1 MUTATED" "DSG1 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE"   "DSG1 MUTATED" "DSG1 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"DSG1 WILD-TYPE"   "DSG1 MUTATED"   "DSG1 MUTATED" "DSG1 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
  "DSG1 MUTATED" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"DSG1 WILD-TYPE"   "DSG1 MUTATED"   "DSG1 MUTATED"   "DSG1 MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE"   "DSG1 MUTATED" "DSG1 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"DSG1 WILD-TYPE"   "DSG1 MUTATED" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE"   "DSG1 MUTATED" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"DSG1 WILD-TYPE"   "DSG1 MUTATED" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE"   "DSG1 MUTATED" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE"   "DSG1 MUTATED" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE"   "DSG1 MUTATED" "DSG1 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE"   "DSG1 MUTATED" "DSG1 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
  "DSG1 MUTATED" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE"   "DSG1 MUTATED" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"DSG1 WILD-TYPE"   "DSG1 MUTATED" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"DSG1 WILD-TYPE"   "DSG1 MUTATED" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
  "DSG1 MUTATED" "DSG1 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE"   "DSG1 MUTATED" "DSG1 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE"   "DSG1 MUTATED" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"DSG1 WILD-TYPE"   "DSG1 MUTATED" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE"   "DSG1 MUTATED" "DSG1 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE"   "DSG1 MUTATED" "DSG1 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"DSG1 WILD-TYPE"   "DSG1 MUTATED"   "DSG1 MUTATED" "DSG1 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
  "DSG1 MUTATED" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"DSG1 WILD-TYPE"   "DSG1 MUTATED"   "DSG1 MUTATED"   "DSG1 MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE"   "DSG1 MUTATED" "DSG1 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"DSG1 WILD-TYPE"   "DSG1 MUTATED" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE"   "DSG1 MUTATED" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"DSG1 WILD-TYPE"   "DSG1 MUTATED" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE"   "DSG1 MUTATED" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE"   "DSG1 MUTATED" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE"   "DSG1 MUTATED" "DSG1 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE"   "DSG1 MUTATED" "DSG1 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
  "DSG1 MUTATED" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE"   "DSG1 MUTATED" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"DSG1 WILD-TYPE"   "DSG1 MUTATED" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"DSG1 WILD-TYPE"   "DSG1 MUTATED" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
  "DSG1 MUTATED" "DSG1 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE"   "DSG1 MUTATED" "DSG1 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE"   "DSG1 MUTATED" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"DSG1 WILD-TYPE"   "DSG1 MUTATED" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE"   "DSG1 MUTATED" "DSG1 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE"   "DSG1 MUTATED" "DSG1 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"DSG1 WILD-TYPE"   "DSG1 MUTATED"   "DSG1 MUTATED" "DSG1 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
  "DSG1 MUTATED" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"DSG1 WILD-TYPE"   "DSG1 MUTATED"   "DSG1 MUTATED"   "DSG1 MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE"   "DSG1 MUTATED" "DSG1 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"DSG1 WILD-TYPE"   "DSG1 MUTATED" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE"   "DSG1 MUTATED" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"DSG1 WILD-TYPE"   "DSG1 MUTATED" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE"   "DSG1 MUTATED" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE"   "DSG1 MUTATED" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE"   "DSG1 MUTATED" "DSG1 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE"   "DSG1 MUTATED" "DSG1 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
  "DSG1 MUTATED" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE"   "DSG1 MUTATED" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"DSG1 WILD-TYPE"   "DSG1 MUTATED" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"DSG1 WILD-TYPE"   "DSG1 MUTATED" "DSG1 WILD-TYPE" "DSG1 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
  "DSG1 MUTATED" "DSG1 WILD-TYPE" 
[1] "hr=" "1.6"
D69V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  DSG1 MUTATED                    2             0
  DSG1 WILD-TYPE                 20             1
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  DSG1 MUTATED                                                                                          6
  DSG1 WILD-TYPE                                                                                       26
                vv
clus             REGIONAL LYMPH NODE
  DSG1 MUTATED                    16
  DSG1 WILD-TYPE                  88
D69V3, multiclass
                                                                                          clus
vv                                                                                         DSG1 MUTATED
  DISTANT METASTASIS                                                                                  2
  PRIMARY TUMOR                                                                                       0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            6
  REGIONAL LYMPH NODE                                                                                16
                                                                                          clus
vv                                                                                         DSG1 WILD-TYPE
  DISTANT METASTASIS                                                                                   20
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             26
  REGIONAL LYMPH NODE                                                                                  88
D69V4, binary
                cls
clus              0  1
  DSG1 MUTATED    9 15
  DSG1 WILD-TYPE 51 84
[1] "tbl2"
                cls
clus             [,1] [,2]
  DSG1 MUTATED      9   15
  DSG1 WILD-TYPE   51   84
        clus
vv       DSG1 MUTATED DSG1 WILD-TYPE
  FEMALE            9             51
  MALE             15             84
                vv
clus              M0  M1 M1A M1B M1C
  DSG1 MUTATED    22   0   0   0   0
  DSG1 WILD-TYPE 116   2   1   2   2
D69V5, multiclass
                vv
clus             N0 N1 N1A N1B N2A N2B N2C N3 NX
  DSG1 MUTATED   10  0   2   4   1   3   1  1  0
  DSG1 WILD-TYPE 77  2   5  11   3   7   4 13  2
D69V6, multiclass
D69V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DSG1 MUTATED             0       1        1        2        5         0
  DSG1 WILD-TYPE           3      16        9       10       13         7
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DSG1 MUTATED           1         0         1          1          6          4
  DSG1 WILD-TYPE         8         7         6          5         11         17
                vv
clus             STAGE IV
  DSG1 MUTATED          0
  DSG1 WILD-TYPE        5
D69V8, multiclass

Clustering(70) Variable = ARL16 MUTATION ANALYSIS
D70V1, survival
                 sevent
clus2              0  1
  ARL16 MUTATED    4  1
  ARL16 WILD-TYPE 69 84
  ARL16 MUTATED ARL16 WILD-TYPE 
              5             153 
  ARL16 MUTATED ARL16 WILD-TYPE 
              1              84 
$`ARL16 MUTATED`
TCGA-D3-A2JF TCGA-EE-A29A TCGA-EE-A2GU TCGA-EE-A2MS TCGA-FS-A1ZT 
       48.76        63.32        67.13       136.44        53.16 

$`ARL16 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       43.40        65.49        23.77        11.87        12.10        58.03 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
       71.24        60.23        24.53         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
       49.74         2.70         6.38        48.89        36.03       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
       20.38       194.83       176.55        35.93       107.34        61.18 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       53.92        65.92        23.44        68.09        28.60        10.49 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 
      215.44        15.68        29.82         8.65        33.73        14.70 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29C 
       26.86         4.93       109.64        78.87       168.26        47.84 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N 
       13.97        39.62        32.19         2.56        44.35        18.58 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V 
       56.42        37.35        14.47        55.89       345.96        25.87 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
       17.92        46.82        78.94        24.43        39.25        58.75 
TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI 
       47.54        43.23       314.53       135.91       182.01        22.55 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO 
       89.33        54.71        55.00        75.48        90.94       101.95 
TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2M5 TCGA-EE-A2M6 
       13.87        14.30        55.59        19.56        21.67       129.24 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG 
       28.80        19.76        61.51        47.28       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM 
       16.96       204.62        96.23       144.76       203.01       167.87 
TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MT TCGA-EE-A2MU 
       47.54       248.61        43.23       103.56        41.59        53.26 
TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF 
        4.24       122.73        25.84         3.68        26.73        13.81 
TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
       23.47       138.77        12.59        26.37         6.41       131.08 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY 
       44.05        79.99        80.32       216.92        48.59       228.59 
TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB 
      202.62        20.91        28.08         7.76        27.68        48.85 
TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH 
      357.37        53.52        40.27        15.45         9.70        32.71 
TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR 
       47.38        23.93       101.26        74.73       133.55        11.41 
TCGA-FS-A1ZS TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 
      148.77        26.56        49.48        27.06        27.02         0.20 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 
       76.41       120.46       117.93        84.72        10.09        64.41 
TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       62.76        32.48        39.58 

  ARL16 MUTATED ARL16 WILD-TYPE 
          48.76            0.20 
  ARL16 MUTATED ARL16 WILD-TYPE 
         136.44          357.37 
  ARL16 MUTATED ARL16 WILD-TYPE 
          63.32           47.28 
[1] "48.8 - 136.4 (63.3)" "0.2 - 357.4 (47.3)" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE"   "ARL16 MUTATED" "ARL16 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
  "ARL16 MUTATED" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
  "ARL16 MUTATED" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE"   "ARL16 MUTATED" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE"   "ARL16 MUTATED" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE"   "ARL16 MUTATED" "ARL16 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
  "ARL16 MUTATED" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
  "ARL16 MUTATED" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE"   "ARL16 MUTATED" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE"   "ARL16 MUTATED" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE"   "ARL16 MUTATED" "ARL16 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
  "ARL16 MUTATED" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
  "ARL16 MUTATED" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE"   "ARL16 MUTATED" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE"   "ARL16 MUTATED" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"ARL16 WILD-TYPE" "ARL16 WILD-TYPE" 
[1] "hr=" "3.3"
D70V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  ARL16 MUTATED                    3             0
  ARL16 WILD-TYPE                 19             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  ARL16 MUTATED                                                                                          0
  ARL16 WILD-TYPE                                                                                       32
                 vv
clus              REGIONAL LYMPH NODE
  ARL16 MUTATED                     2
  ARL16 WILD-TYPE                 102
D70V3, multiclass
                                                                                          clus
vv                                                                                         ARL16 MUTATED
  DISTANT METASTASIS                                                                                   3
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             0
  REGIONAL LYMPH NODE                                                                                  2
                                                                                          clus
vv                                                                                         ARL16 WILD-TYPE
  DISTANT METASTASIS                                                                                    19
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              32
  REGIONAL LYMPH NODE                                                                                  102
D70V4, binary
                 cls
clus               0  1
  ARL16 MUTATED    1  4
  ARL16 WILD-TYPE 59 95
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ARL16 MUTATED      1    4
  ARL16 WILD-TYPE   59   95
        clus
vv       ARL16 MUTATED ARL16 WILD-TYPE
  FEMALE             1              59
  MALE               4              95
                 vv
clus               M0  M1 M1A M1B M1C
  ARL16 MUTATED     5   0   0   0   0
  ARL16 WILD-TYPE 133   2   1   2   2
D70V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2A N2B N2C N3 NX
  ARL16 MUTATED    3  0   1   1   0   0   0  0  0
  ARL16 WILD-TYPE 84  2   6  14   4  10   5 14  2
D70V6, multiclass
D70V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  ARL16 MUTATED             0       0        2        0        1         0
  ARL16 WILD-TYPE           3      17        8       12       17         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  ARL16 MUTATED           0         0         1          1          0
  ARL16 WILD-TYPE         9         7         6          5         17
                 vv
clus              STAGE IIIC STAGE IV
  ARL16 MUTATED            0        0
  ARL16 WILD-TYPE         21        5
D70V8, multiclass

Clustering(71) Variable = VEGFC MUTATION ANALYSIS
D71V1, survival
                 sevent
clus2              0  1
  VEGFC MUTATED    9  6
  VEGFC WILD-TYPE 64 79
  VEGFC MUTATED VEGFC WILD-TYPE 
             15             143 
  VEGFC MUTATED VEGFC WILD-TYPE 
              6              79 
$`VEGFC MUTATED`
TCGA-D3-A1Q7 TCGA-D3-A2JK TCGA-D3-A3MV TCGA-D9-A1JW TCGA-DA-A1HW TCGA-EE-A20F 
      121.22        12.10        21.47         2.70        36.03        78.87 
TCGA-EE-A2A6 TCGA-EE-A2GC TCGA-EE-A2GJ TCGA-EE-A2MJ TCGA-EE-A3AA TCGA-EE-A3AE 
       58.75        43.23        89.33        96.23         4.24        26.73 
TCGA-FS-A1Z3 TCGA-FS-A1ZA TCGA-FS-A1ZZ 
       20.91        27.68        27.02 

$`VEGFC WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.57       112.54        71.80        28.08        31.59        43.40 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A3C6 TCGA-D3-A3CC 
       65.49        23.77        11.87        48.76        58.03        71.24 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JX 
       60.23        24.53         9.30       148.31        49.74         6.38 
TCGA-DA-A1HV TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 
       48.89       117.17        20.38       194.83       176.55        35.93 
TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC 
      107.34        61.18        53.92        65.92        23.44        68.09 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z 
       28.60        10.49       215.44        15.68        29.82         8.65 
TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20H 
       33.73        14.70        26.86         4.93       109.64       168.26 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L 
       63.32        47.84        13.97        39.62        32.19         2.56 
TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
       44.35        18.58        56.42        37.35        14.47        55.89 
TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
      345.96        25.87        17.92        46.82        78.94        24.43 
TCGA-EE-A2A5 TCGA-EE-A2GB TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI 
       39.25        47.54       314.53       135.91       182.01        22.55 
TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP 
       54.71        55.00        75.48        90.94       101.95        13.87 
TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 
       14.30        55.59        19.56        67.13        21.67       129.24 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG 
       28.80        19.76        61.51        47.28       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN 
       16.96       204.62       144.76       203.01       167.87        47.54 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU 
      248.61        43.23       103.56       136.44        41.59        53.26 
TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH 
      122.73        25.84         3.68        13.81        23.47       138.77 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 
       12.59        26.37         6.41       131.08        44.05        79.99 
TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z4 
       80.32       216.92        48.59       228.59       202.62        28.08 
TCGA-FS-A1Z7 TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF 
        7.76        48.85       357.37        53.52        40.27        15.45 
TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP 
        9.70        32.71        47.38        23.93       101.26        74.73 
TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW 
      133.55        11.41       148.77        53.16        26.56        49.48 
TCGA-FS-A1ZY TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
       27.06         0.20        76.41       120.46       117.93        84.72 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       10.09        64.41        62.76        32.48        39.58 

  VEGFC MUTATED VEGFC WILD-TYPE 
            2.7             0.2 
  VEGFC MUTATED VEGFC WILD-TYPE 
         121.22          357.37 
  VEGFC MUTATED VEGFC WILD-TYPE 
          27.68           48.59 
[1] "2.7 - 121.2 (27.7)" "0.2 - 357.4 (48.6)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"VEGFC WILD-TYPE"   "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
  "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" "VEGFC WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"VEGFC WILD-TYPE"   "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" "VEGFC WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" "VEGFC WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" "VEGFC WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"VEGFC WILD-TYPE"   "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
  "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"VEGFC WILD-TYPE"   "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
  "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" "VEGFC WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"VEGFC WILD-TYPE"   "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" "VEGFC WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" "VEGFC WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" "VEGFC WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"VEGFC WILD-TYPE"   "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
  "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"VEGFC WILD-TYPE"   "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
  "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" "VEGFC WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"VEGFC WILD-TYPE"   "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" "VEGFC WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" "VEGFC WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" "VEGFC WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"VEGFC WILD-TYPE"   "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
  "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
[1] "hr=" "1.1"
D71V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  VEGFC MUTATED                    3             0
  VEGFC WILD-TYPE                 19             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  VEGFC MUTATED                                                                                          1
  VEGFC WILD-TYPE                                                                                       31
                 vv
clus              REGIONAL LYMPH NODE
  VEGFC MUTATED                    11
  VEGFC WILD-TYPE                  93
D71V3, multiclass
                                                                                          clus
vv                                                                                         VEGFC MUTATED
  DISTANT METASTASIS                                                                                   3
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             1
  REGIONAL LYMPH NODE                                                                                 11
                                                                                          clus
vv                                                                                         VEGFC WILD-TYPE
  DISTANT METASTASIS                                                                                    19
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              31
  REGIONAL LYMPH NODE                                                                                   93
D71V4, binary
                 cls
clus               0  1
  VEGFC MUTATED    7  8
  VEGFC WILD-TYPE 53 91
[1] "tbl2"
                 cls
clus              [,1] [,2]
  VEGFC MUTATED      7    8
  VEGFC WILD-TYPE   53   91
        clus
vv       VEGFC MUTATED VEGFC WILD-TYPE
  FEMALE             7              53
  MALE               8              91
                 vv
clus               M0  M1 M1A M1B M1C
  VEGFC MUTATED    13   0   0   0   0
  VEGFC WILD-TYPE 125   2   1   2   2
D71V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2A N2B N2C N3 NX
  VEGFC MUTATED    8  0   0   1   2   1   1  0  0
  VEGFC WILD-TYPE 79  2   7  14   2   9   4 14  2
D71V6, multiclass
D71V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  VEGFC MUTATED             0       0        3        1        2         0
  VEGFC WILD-TYPE           3      17        7       11       16         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  VEGFC MUTATED           2         0         0          0          3
  VEGFC WILD-TYPE         7         7         7          6         14
                 vv
clus              STAGE IIIC STAGE IV
  VEGFC MUTATED            1        0
  VEGFC WILD-TYPE         20        5
D71V8, multiclass

Clustering(72) Variable = PSG4 MUTATION ANALYSIS
D72V1, survival
                sevent
clus2             0  1
  PSG4 MUTATED    8  8
  PSG4 WILD-TYPE 65 77
  PSG4 MUTATED PSG4 WILD-TYPE 
            16            142 
  PSG4 MUTATED PSG4 WILD-TYPE 
             8             77 
$`PSG4 MUTATED`
TCGA-D3-A2J8 TCGA-EE-A185 TCGA-EE-A20H TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29M 
       65.49         4.93       168.26        13.97        39.62        44.35 
TCGA-EE-A2GL TCGA-EE-A2GO TCGA-EE-A2MD TCGA-EE-A2MM TCGA-EE-A2MR TCGA-EE-A3AC 
       55.00       101.95        47.28       167.87       103.56        25.84 
TCGA-ER-A19F TCGA-FS-A1Z3 TCGA-FS-A1ZS TCGA-FS-A1ZW 
       26.37        20.91       148.77        49.48 

$`PSG4 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 
       43.40        23.77        11.87        48.76        12.10        58.03 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
       71.24        60.23        24.53         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
       49.74         2.70         6.38        48.89        36.03       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
       20.38       194.83       176.55        35.93       107.34        61.18 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       53.92        65.92        23.44        68.09        28.60        10.49 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 
      215.44        15.68        29.82         8.65        33.73        14.70 
TCGA-EE-A183 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29H 
       26.86       109.64        78.87        63.32        47.84        32.19 
TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
        2.56        18.58        56.42        37.35        14.47        55.89 
TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
      345.96        25.87        17.92        46.82        78.94        24.43 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE 
       39.25        58.75        47.54        43.23       314.53       135.91 
TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GM TCGA-EE-A2GN 
      182.01        22.55        89.33        54.71        75.48        90.94 
TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 
       13.87        14.30        55.59        19.56        67.13        21.67 
TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2ME TCGA-EE-A2MG 
      129.24        28.80        19.76        61.51       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MN 
       16.96       204.62        96.23       144.76       203.01        47.54 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA 
      248.61        43.23       136.44        41.59        53.26         4.24 
TCGA-EE-A3AB TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH 
      122.73         3.68        26.73        13.81        23.47       138.77 
TCGA-ER-A19D TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
       12.59         6.41       131.08        44.05        79.99        80.32 
TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z4 TCGA-FS-A1Z7 
      216.92        48.59       228.59       202.62        28.08         7.76 
TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF 
       27.68        48.85       357.37        53.52        40.27        15.45 
TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP 
        9.70        32.71        47.38        23.93       101.26        74.73 
TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZY TCGA-FS-A1ZZ 
      133.55        11.41        53.16        26.56        27.06        27.02 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        0.20        76.41       120.46       117.93        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       64.41        62.76        32.48        39.58 

  PSG4 MUTATED PSG4 WILD-TYPE 
          4.93           0.20 
  PSG4 MUTATED PSG4 WILD-TYPE 
        168.26         357.37 
  PSG4 MUTATED PSG4 WILD-TYPE 
         48.38          47.54 
[1] "4.9 - 168.3 (48.4)" "0.2 - 357.4 (47.5)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE"   "PSG4 MUTATED" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
  "PSG4 MUTATED" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE"   "PSG4 MUTATED" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE"   "PSG4 MUTATED"   "PSG4 MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE"   "PSG4 MUTATED" "PSG4 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
  "PSG4 MUTATED" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE"   "PSG4 MUTATED" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE"   "PSG4 MUTATED" "PSG4 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE"   "PSG4 MUTATED" "PSG4 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE"   "PSG4 MUTATED" "PSG4 WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
  "PSG4 MUTATED" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE"   "PSG4 MUTATED" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"PSG4 WILD-TYPE"   "PSG4 MUTATED" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE"   "PSG4 MUTATED" "PSG4 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"PSG4 WILD-TYPE"   "PSG4 MUTATED" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE"   "PSG4 MUTATED" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
  "PSG4 MUTATED" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE"   "PSG4 MUTATED" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE"   "PSG4 MUTATED"   "PSG4 MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE"   "PSG4 MUTATED" "PSG4 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
  "PSG4 MUTATED" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE"   "PSG4 MUTATED" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE"   "PSG4 MUTATED" "PSG4 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE"   "PSG4 MUTATED" "PSG4 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE"   "PSG4 MUTATED" "PSG4 WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
  "PSG4 MUTATED" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE"   "PSG4 MUTATED" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"PSG4 WILD-TYPE"   "PSG4 MUTATED" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE"   "PSG4 MUTATED" "PSG4 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"PSG4 WILD-TYPE"   "PSG4 MUTATED" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE"   "PSG4 MUTATED" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
  "PSG4 MUTATED" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE"   "PSG4 MUTATED" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE"   "PSG4 MUTATED"   "PSG4 MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE"   "PSG4 MUTATED" "PSG4 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
  "PSG4 MUTATED" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE"   "PSG4 MUTATED" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE"   "PSG4 MUTATED" "PSG4 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE"   "PSG4 MUTATED" "PSG4 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE"   "PSG4 MUTATED" "PSG4 WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
  "PSG4 MUTATED" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE"   "PSG4 MUTATED" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"PSG4 WILD-TYPE"   "PSG4 MUTATED" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE"   "PSG4 MUTATED" "PSG4 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"PSG4 WILD-TYPE"   "PSG4 MUTATED" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"PSG4 WILD-TYPE" "PSG4 WILD-TYPE" 
[1] "hr=" "1.1"
D72V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  PSG4 MUTATED                    2             1
  PSG4 WILD-TYPE                 20             0
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  PSG4 MUTATED                                                                                          1
  PSG4 WILD-TYPE                                                                                       31
                vv
clus             REGIONAL LYMPH NODE
  PSG4 MUTATED                    12
  PSG4 WILD-TYPE                  92
D72V3, multiclass
                                                                                          clus
vv                                                                                         PSG4 MUTATED
  DISTANT METASTASIS                                                                                  2
  PRIMARY TUMOR                                                                                       1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            1
  REGIONAL LYMPH NODE                                                                                12
                                                                                          clus
vv                                                                                         PSG4 WILD-TYPE
  DISTANT METASTASIS                                                                                   20
  PRIMARY TUMOR                                                                                         0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             31
  REGIONAL LYMPH NODE                                                                                  92
D72V4, binary
                cls
clus              0  1
  PSG4 MUTATED    6 10
  PSG4 WILD-TYPE 54 89
[1] "tbl2"
                cls
clus             [,1] [,2]
  PSG4 MUTATED      6   10
  PSG4 WILD-TYPE   54   89
        clus
vv       PSG4 MUTATED PSG4 WILD-TYPE
  FEMALE            6             54
  MALE             10             89
                vv
clus              M0  M1 M1A M1B M1C
  PSG4 MUTATED    14   0   0   0   0
  PSG4 WILD-TYPE 124   2   1   2   2
D72V5, multiclass
                vv
clus             N0 N1 N1A N1B N2A N2B N2C N3 NX
  PSG4 MUTATED   10  0   1   2   0   0   0  1  0
  PSG4 WILD-TYPE 77  2   6  13   4  10   5 13  2
D72V6, multiclass
D72V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  PSG4 MUTATED             0       3        0        2        3         1
  PSG4 WILD-TYPE           3      14       10       10       15         6
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  PSG4 MUTATED           0         0         0          0          2          2
  PSG4 WILD-TYPE         9         7         7          6         15         19
                vv
clus             STAGE IV
  PSG4 MUTATED          0
  PSG4 WILD-TYPE        5
D72V8, multiclass

Clustering(73) Variable = DEFB119 MUTATION ANALYSIS
D73V1, survival
                   sevent
clus2                0  1
  DEFB119 MUTATED    2  4
  DEFB119 WILD-TYPE 71 81
  DEFB119 MUTATED DEFB119 WILD-TYPE 
                6               152 
  DEFB119 MUTATED DEFB119 WILD-TYPE 
                4                81 
$`DEFB119 MUTATED`
TCGA-DA-A1I7 TCGA-EE-A183 TCGA-EE-A3AA TCGA-ER-A19D TCGA-FS-A1ZQ TCGA-FS-A1ZZ 
       61.18        26.86         4.24        12.59       133.55        27.02 

$`DEFB119 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW 
      148.31        49.74         2.70         6.38        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       53.92        65.92        23.44        68.09        28.60        10.49 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 
      215.44        15.68        29.82         8.65        33.73        14.70 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.93       109.64        78.87       168.26        63.32        47.84 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N 
       13.97        39.62        32.19         2.56        44.35        18.58 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V 
       56.42        37.35        14.47        55.89       345.96        25.87 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
       17.92        46.82        78.94        24.43        39.25        58.75 
TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI 
       47.54        43.23       314.53       135.91       182.01        22.55 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO 
       89.33        54.71        55.00        75.48        90.94       101.95 
TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 
       13.87        14.30        55.59        19.56        67.13        21.67 
TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME 
      129.24        28.80        19.76        61.51        47.28       103.27 
TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML 
      103.17        16.96       204.62        96.23       144.76       203.01 
TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS 
      167.87        47.54       248.61        43.23       103.56       136.44 
TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE 
       41.59        53.26       122.73        25.84         3.68        26.73 
TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
       13.81        23.47       138.77        26.37         6.41       131.08 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY 
       44.05        79.99        80.32       216.92        48.59       228.59 
TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB 
      202.62        20.91        28.08         7.76        27.68        48.85 
TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH 
      357.37        53.52        40.27        15.45         9.70        32.71 
TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS 
       47.38        23.93       101.26        74.73        11.41       148.77 
TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FW-A3I3 TCGA-GN-A261 
       53.16        26.56        49.48        27.06         0.20        76.41 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 
      120.46       117.93        84.72        10.09        64.41        62.76 
TCGA-GN-A26A TCGA-GN-A26D 
       32.48        39.58 

  DEFB119 MUTATED DEFB119 WILD-TYPE 
             4.24              0.20 
  DEFB119 MUTATED DEFB119 WILD-TYPE 
           133.55            357.37 
  DEFB119 MUTATED DEFB119 WILD-TYPE 
            26.94             47.69 
[1] "4.2 - 133.6 (26.9)" "0.2 - 357.4 (47.7)"
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE"   "DEFB119 MUTATED" "DEFB119 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE"   "DEFB119 MUTATED" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE"   "DEFB119 MUTATED" "DEFB119 WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE"   "DEFB119 MUTATED" "DEFB119 WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
  "DEFB119 MUTATED" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE"   "DEFB119 MUTATED" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE"   "DEFB119 MUTATED" "DEFB119 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE"   "DEFB119 MUTATED" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE"   "DEFB119 MUTATED" "DEFB119 WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE"   "DEFB119 MUTATED" "DEFB119 WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
  "DEFB119 MUTATED" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE"   "DEFB119 MUTATED" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE"   "DEFB119 MUTATED" "DEFB119 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE"   "DEFB119 MUTATED" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE"   "DEFB119 MUTATED" "DEFB119 WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE"   "DEFB119 MUTATED" "DEFB119 WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
  "DEFB119 MUTATED" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE"   "DEFB119 MUTATED" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"DEFB119 WILD-TYPE" "DEFB119 WILD-TYPE" 
[1] "hr=" "1.9"
D73V2, continuous
                   vv
clus                DISTANT METASTASIS PRIMARY TUMOR
  DEFB119 MUTATED                    2             0
  DEFB119 WILD-TYPE                 20             1
                   vv
clus                REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  DEFB119 MUTATED                                                                                          2
  DEFB119 WILD-TYPE                                                                                       30
                   vv
clus                REGIONAL LYMPH NODE
  DEFB119 MUTATED                     2
  DEFB119 WILD-TYPE                 102
D73V3, multiclass
                                                                                          clus
vv                                                                                         DEFB119 MUTATED
  DISTANT METASTASIS                                                                                     2
  PRIMARY TUMOR                                                                                          0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               2
  REGIONAL LYMPH NODE                                                                                    2
                                                                                          clus
vv                                                                                         DEFB119 WILD-TYPE
  DISTANT METASTASIS                                                                                      20
  PRIMARY TUMOR                                                                                            1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                30
  REGIONAL LYMPH NODE                                                                                    102
D73V4, binary
                   cls
clus                 0  1
  DEFB119 MUTATED    2  4
  DEFB119 WILD-TYPE 58 95
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DEFB119 MUTATED      2    4
  DEFB119 WILD-TYPE   58   95
        clus
vv       DEFB119 MUTATED DEFB119 WILD-TYPE
  FEMALE               2                58
  MALE                 4                95
                   vv
clus                 M0  M1 M1A M1B M1C
  DEFB119 MUTATED     5   0   0   0   0
  DEFB119 WILD-TYPE 133   2   1   2   2
D73V5, multiclass
                   vv
clus                N0 N1 N1A N1B N2A N2B N2C N3 NX
  DEFB119 MUTATED    4  0   0   0   0   1   0  0  0
  DEFB119 WILD-TYPE 83  2   7  15   4   9   5 14  2
D73V6, multiclass
D73V7, continuous
                   vv
clus                I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEFB119 MUTATED             1       1        0        1        0         0
  DEFB119 WILD-TYPE           2      16       10       11       18         7
                   vv
clus                STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  DEFB119 MUTATED           1         0         0          0          1
  DEFB119 WILD-TYPE         8         7         7          6         16
                   vv
clus                STAGE IIIC STAGE IV
  DEFB119 MUTATED            0        0
  DEFB119 WILD-TYPE         21        5
D73V8, multiclass

Clustering(74) Variable = KLHL4 MUTATION ANALYSIS
D74V1, survival
                 sevent
clus2              0  1
  KLHL4 MUTATED   11  4
  KLHL4 WILD-TYPE 62 81
  KLHL4 MUTATED KLHL4 WILD-TYPE 
             15             143 
  KLHL4 MUTATED KLHL4 WILD-TYPE 
              4              81 
$`KLHL4 MUTATED`
TCGA-D3-A2JF TCGA-DA-A1IC TCGA-DA-A3F5 TCGA-EE-A29C TCGA-EE-A29H TCGA-EE-A29L 
       48.76        68.09       215.44        47.84        32.19         2.56 
TCGA-EE-A29R TCGA-EE-A2GD TCGA-EE-A2GO TCGA-EE-A2GU TCGA-EE-A2MR TCGA-EE-A3AC 
       14.47       314.53       101.95        67.13       103.56        25.84 
TCGA-ER-A19D TCGA-GN-A262 TCGA-GN-A266 
       12.59       120.46        10.09 

$`KLHL4 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       43.40        65.49        23.77        11.87        12.10        58.03 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
       71.24        60.23        24.53         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
       49.74         2.70         6.38        48.89        36.03       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
       20.38       194.83       176.55        35.93       107.34        61.18 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F8 
       53.92        65.92        23.44        28.60        10.49        15.68 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       29.82         8.65        33.73        14.70        26.86         4.93 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29D TCGA-EE-A29E 
      109.64        78.87       168.26        63.32        13.97        39.62 
TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29T 
       44.35        18.58        56.42        37.35        55.89       345.96 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
       25.87        17.92        46.82        78.94        24.43        39.25 
TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI 
       58.75        47.54        43.23       135.91       182.01        22.55 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GP 
       89.33        54.71        55.00        75.48        90.94        13.87 
TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 
       14.30        55.59        19.56        21.67       129.24        28.80 
TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH 
       19.76        61.51        47.28       103.27       103.17        16.96 
TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN 
      204.62        96.23       144.76       203.01       167.87        47.54 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA 
      248.61        43.23       136.44        41.59        53.26         4.24 
TCGA-EE-A3AB TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH 
      122.73         3.68        26.73        13.81        23.47       138.77 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
       26.37         6.41       131.08        44.05        79.99        80.32 
TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 
      216.92        48.59       228.59       202.62        20.91        28.08 
TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE 
        7.76        27.68        48.85       357.37        53.52        40.27 
TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM 
       15.45         9.70        32.71        47.38        23.93       101.26 
TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU 
       74.73       133.55        11.41       148.77        53.16        26.56 
TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A264 
       49.48        27.06        27.02         0.20        76.41       117.93 
TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       84.72        64.41        62.76        32.48        39.58 

  KLHL4 MUTATED KLHL4 WILD-TYPE 
           2.56            0.20 
  KLHL4 MUTATED KLHL4 WILD-TYPE 
         314.53          357.37 
  KLHL4 MUTATED KLHL4 WILD-TYPE 
          48.76           47.38 
[1] "2.6 - 314.5 (48.8)" "0.2 - 357.4 (47.4)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
  "KLHL4 MUTATED"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
  "KLHL4 MUTATED"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
  "KLHL4 MUTATED"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
[1] "hr=" "2.4"
D74V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  KLHL4 MUTATED                    1             0
  KLHL4 WILD-TYPE                 21             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  KLHL4 MUTATED                                                                                          6
  KLHL4 WILD-TYPE                                                                                       26
                 vv
clus              REGIONAL LYMPH NODE
  KLHL4 MUTATED                     8
  KLHL4 WILD-TYPE                  96
D74V3, multiclass
                                                                                          clus
vv                                                                                         KLHL4 MUTATED
  DISTANT METASTASIS                                                                                   1
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             6
  REGIONAL LYMPH NODE                                                                                  8
                                                                                          clus
vv                                                                                         KLHL4 WILD-TYPE
  DISTANT METASTASIS                                                                                    21
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              26
  REGIONAL LYMPH NODE                                                                                   96
D74V4, binary
                 cls
clus               0  1
  KLHL4 MUTATED    7  8
  KLHL4 WILD-TYPE 53 91
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KLHL4 MUTATED      7    8
  KLHL4 WILD-TYPE   53   91
        clus
vv       KLHL4 MUTATED KLHL4 WILD-TYPE
  FEMALE             7              53
  MALE               8              91
                 vv
clus               M0  M1 M1A M1B M1C
  KLHL4 MUTATED    12   0   0   0   0
  KLHL4 WILD-TYPE 126   2   1   2   2
D74V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2A N2B N2C N3 NX
  KLHL4 MUTATED    8  0   0   1   0   0   1  2  0
  KLHL4 WILD-TYPE 79  2   7  14   4  10   4 12  2
D74V6, multiclass
D74V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  KLHL4 MUTATED             0       1        3        2        1         0
  KLHL4 WILD-TYPE           3      16        7       10       17         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  KLHL4 MUTATED           1         0         0          0          1
  KLHL4 WILD-TYPE         8         7         7          6         16
                 vv
clus              STAGE IIIC STAGE IV
  KLHL4 MUTATED            3        0
  KLHL4 WILD-TYPE         18        5
D74V8, multiclass

Clustering(75) Variable = EIF3D MUTATION ANALYSIS
D75V1, survival
                 sevent
clus2              0  1
  EIF3D MUTATED    1  2
  EIF3D WILD-TYPE 72 83
  EIF3D MUTATED EIF3D WILD-TYPE 
              3             155 
  EIF3D MUTATED EIF3D WILD-TYPE 
              2              83 
$`EIF3D MUTATED`
TCGA-EE-A29L TCGA-EE-A2A5 TCGA-EE-A2GT 
        2.56        39.25        19.56 

$`EIF3D WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW 
      148.31        49.74         2.70         6.38        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       61.18        53.92        65.92        23.44        68.09        28.60 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
       10.49       215.44        15.68        29.82         8.65        33.73 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H 
       14.70        26.86         4.93       109.64        78.87       168.26 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29M 
       63.32        47.84        13.97        39.62        32.19        44.35 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T 
       18.58        56.42        37.35        14.47        55.89       345.96 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 
       25.87        17.92        46.82        78.94        24.43        58.75 
TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI 
       47.54        43.23       314.53       135.91       182.01        22.55 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO 
       89.33        54.71        55.00        75.48        90.94       101.95 
TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 
       13.87        14.30        55.59        67.13        21.67       129.24 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG 
       28.80        19.76        61.51        47.28       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM 
       16.96       204.62        96.23       144.76       203.01       167.87 
TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT 
       47.54       248.61        43.23       103.56       136.44        41.59 
TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE 
       53.26         4.24       122.73        25.84         3.68        26.73 
TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       13.81        23.47       138.77        12.59        26.37         6.41 
TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX 
      131.08        44.05        79.99        80.32       216.92        48.59 
TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA 
      228.59       202.62        20.91        28.08         7.76        27.68 
TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG 
       48.85       357.37        53.52        40.27        15.45         9.70 
TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ 
       32.71        47.38        23.93       101.26        74.73       133.55 
TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY 
       11.41       148.77        53.16        26.56        49.48        27.06 
TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
       27.02         0.20        76.41       120.46       117.93        84.72 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       10.09        64.41        62.76        32.48        39.58 

  EIF3D MUTATED EIF3D WILD-TYPE 
           2.56            0.20 
  EIF3D MUTATED EIF3D WILD-TYPE 
          39.25          357.37 
  EIF3D MUTATED EIF3D WILD-TYPE 
          19.56           47.84 
[1] "2.6 - 39.2 (19.6)"  "0.2 - 357.4 (47.8)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"EIF3D WILD-TYPE"   "EIF3D MUTATED" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE"   "EIF3D MUTATED" "EIF3D WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE"   "EIF3D MUTATED" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"EIF3D WILD-TYPE"   "EIF3D MUTATED" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE"   "EIF3D MUTATED" "EIF3D WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE"   "EIF3D MUTATED" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"EIF3D WILD-TYPE"   "EIF3D MUTATED" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE"   "EIF3D MUTATED" "EIF3D WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE"   "EIF3D MUTATED" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"EIF3D WILD-TYPE" "EIF3D WILD-TYPE" 
[1] "hr=" "3.8"
D75V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  EIF3D MUTATED                    0             0
  EIF3D WILD-TYPE                 22             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  EIF3D MUTATED                                                                                          1
  EIF3D WILD-TYPE                                                                                       31
                 vv
clus              REGIONAL LYMPH NODE
  EIF3D MUTATED                     2
  EIF3D WILD-TYPE                 102
D75V3, multiclass
                                                                                          clus
vv                                                                                         EIF3D MUTATED
  DISTANT METASTASIS                                                                                   0
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             1
  REGIONAL LYMPH NODE                                                                                  2
                                                                                          clus
vv                                                                                         EIF3D WILD-TYPE
  DISTANT METASTASIS                                                                                    22
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              31
  REGIONAL LYMPH NODE                                                                                  102
D75V4, binary
                 cls
clus               0  1
  EIF3D MUTATED    0  3
  EIF3D WILD-TYPE 60 96
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EIF3D MUTATED      0    3
  EIF3D WILD-TYPE   60   96
        clus
vv       EIF3D MUTATED EIF3D WILD-TYPE
  FEMALE             0              60
  MALE               3              96
                 vv
clus               M0  M1 M1A M1B M1C
  EIF3D MUTATED     3   0   0   0   0
  EIF3D WILD-TYPE 135   2   1   2   2
D75V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2A N2B N2C N3 NX
  EIF3D MUTATED    2  0   0   0   0   0   0  1  0
  EIF3D WILD-TYPE 85  2   7  15   4  10   5 13  2
D75V6, multiclass
D75V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  EIF3D MUTATED             0       0        0        1        0         1
  EIF3D WILD-TYPE           3      17       10       11       18         6
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  EIF3D MUTATED           0         0         0          0          0
  EIF3D WILD-TYPE         9         7         7          6         17
                 vv
clus              STAGE IIIC STAGE IV
  EIF3D MUTATED            1        0
  EIF3D WILD-TYPE         20        5
D75V8, multiclass

Clustering(76) Variable = OR2W1 MUTATION ANALYSIS
D76V1, survival
                 sevent
clus2              0  1
  OR2W1 MUTATED    7  5
  OR2W1 WILD-TYPE 66 80
  OR2W1 MUTATED OR2W1 WILD-TYPE 
             12             146 
  OR2W1 MUTATED OR2W1 WILD-TYPE 
              5              80 
$`OR2W1 MUTATED`
TCGA-DA-A1HV TCGA-EE-A182 TCGA-EE-A29D TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2GD 
       48.89        14.70        13.97        78.94        24.43       314.53 
TCGA-EE-A2GO TCGA-EE-A2M5 TCGA-EE-A2MD TCGA-EE-A3AF TCGA-ER-A3ET TCGA-FS-A1ZW 
      101.95        21.67        47.28        13.81        80.32        49.48 

$`OR2W1 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HW TCGA-DA-A1HY 
      148.31        49.74         2.70         6.38        36.03       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
       20.38       194.83       176.55        35.93       107.34        61.18 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       53.92        65.92        23.44        68.09        28.60        10.49 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 
      215.44        15.68        29.82         8.65        33.73        26.86 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.93       109.64        78.87       168.26        63.32        47.84 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
       39.62        32.19         2.56        44.35        18.58        56.42 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X 
       37.35        14.47        55.89       345.96        25.87        17.92 
TCGA-EE-A2A0 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GE 
       46.82        39.25        58.75        47.54        43.23       135.91 
TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM 
      182.01        22.55        89.33        54.71        55.00        75.48 
TCGA-EE-A2GN TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU 
       90.94        13.87        14.30        55.59        19.56        67.13 
TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2ME TCGA-EE-A2MG 
      129.24        28.80        19.76        61.51       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM 
       16.96       204.62        96.23       144.76       203.01       167.87 
TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT 
       47.54       248.61        43.23       103.56       136.44        41.59 
TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE 
       53.26         4.24       122.73        25.84         3.68        26.73 
TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
       23.47       138.77        12.59        26.37         6.41       131.08 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 
       44.05        79.99       216.92        48.59       228.59       202.62 
TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC 
       20.91        28.08         7.76        27.68        48.85       357.37 
TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ 
       53.52        40.27        15.45         9.70        32.71        47.38 
TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS 
       23.93       101.26        74.73       133.55        11.41       148.77 
TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 
       53.16        26.56        27.06        27.02         0.20        76.41 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 
      120.46       117.93        84.72        10.09        64.41        62.76 
TCGA-GN-A26A TCGA-GN-A26D 
       32.48        39.58 

  OR2W1 MUTATED OR2W1 WILD-TYPE 
          13.81            0.20 
  OR2W1 MUTATED OR2W1 WILD-TYPE 
         314.53          357.37 
  OR2W1 MUTATED OR2W1 WILD-TYPE 
         48.085          47.540 
[1] "13.8 - 314.5 (48.1)" "0.2 - 357.4 (47.5)" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE"   "OR2W1 MUTATED" "OR2W1 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE"   "OR2W1 MUTATED" "OR2W1 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE"   "OR2W1 MUTATED" "OR2W1 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
  "OR2W1 MUTATED"   "OR2W1 MUTATED" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE"   "OR2W1 MUTATED" "OR2W1 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE"   "OR2W1 MUTATED" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"OR2W1 WILD-TYPE"   "OR2W1 MUTATED" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE"   "OR2W1 MUTATED" "OR2W1 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE"   "OR2W1 MUTATED" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
  "OR2W1 MUTATED" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"OR2W1 WILD-TYPE"   "OR2W1 MUTATED" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE"   "OR2W1 MUTATED" "OR2W1 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE"   "OR2W1 MUTATED" "OR2W1 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE"   "OR2W1 MUTATED" "OR2W1 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
  "OR2W1 MUTATED"   "OR2W1 MUTATED" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE"   "OR2W1 MUTATED" "OR2W1 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE"   "OR2W1 MUTATED" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"OR2W1 WILD-TYPE"   "OR2W1 MUTATED" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE"   "OR2W1 MUTATED" "OR2W1 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE"   "OR2W1 MUTATED" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
  "OR2W1 MUTATED" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"OR2W1 WILD-TYPE"   "OR2W1 MUTATED" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE"   "OR2W1 MUTATED" "OR2W1 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE"   "OR2W1 MUTATED" "OR2W1 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE"   "OR2W1 MUTATED" "OR2W1 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
  "OR2W1 MUTATED"   "OR2W1 MUTATED" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE"   "OR2W1 MUTATED" "OR2W1 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE"   "OR2W1 MUTATED" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"OR2W1 WILD-TYPE"   "OR2W1 MUTATED" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE"   "OR2W1 MUTATED" "OR2W1 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE"   "OR2W1 MUTATED" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
  "OR2W1 MUTATED" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"OR2W1 WILD-TYPE"   "OR2W1 MUTATED" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"OR2W1 WILD-TYPE" "OR2W1 WILD-TYPE" 
[1] "hr=" "1.3"
D76V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  OR2W1 MUTATED                    1             0
  OR2W1 WILD-TYPE                 21             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  OR2W1 MUTATED                                                                                          3
  OR2W1 WILD-TYPE                                                                                       29
                 vv
clus              REGIONAL LYMPH NODE
  OR2W1 MUTATED                     8
  OR2W1 WILD-TYPE                  96
D76V3, multiclass
                                                                                          clus
vv                                                                                         OR2W1 MUTATED
  DISTANT METASTASIS                                                                                   1
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             3
  REGIONAL LYMPH NODE                                                                                  8
                                                                                          clus
vv                                                                                         OR2W1 WILD-TYPE
  DISTANT METASTASIS                                                                                    21
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              29
  REGIONAL LYMPH NODE                                                                                   96
D76V4, binary
                 cls
clus               0  1
  OR2W1 MUTATED    6  6
  OR2W1 WILD-TYPE 54 93
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2W1 MUTATED      6    6
  OR2W1 WILD-TYPE   54   93
        clus
vv       OR2W1 MUTATED OR2W1 WILD-TYPE
  FEMALE             6              54
  MALE               6              93
                 vv
clus               M0  M1 M1A M1B M1C
  OR2W1 MUTATED    11   0   0   0   0
  OR2W1 WILD-TYPE 127   2   1   2   2
D76V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2A N2B N2C N3 NX
  OR2W1 MUTATED    5  0   2   3   0   1   0  0  0
  OR2W1 WILD-TYPE 82  2   5  12   4   9   5 14  2
D76V6, multiclass
D76V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  OR2W1 MUTATED             0       1        0        1        2         0
  OR2W1 WILD-TYPE           3      16       10       11       16         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  OR2W1 MUTATED           1         0         0          1          3
  OR2W1 WILD-TYPE         8         7         7          5         14
                 vv
clus              STAGE IIIC STAGE IV
  OR2W1 MUTATED            2        0
  OR2W1 WILD-TYPE         19        5
D76V8, multiclass

Clustering(77) Variable = OR4N2 MUTATION ANALYSIS
D77V1, survival
                 sevent
clus2              0  1
  OR4N2 MUTATED   11  7
  OR4N2 WILD-TYPE 62 78
  OR4N2 MUTATED OR4N2 WILD-TYPE 
             18             140 
  OR4N2 MUTATED OR4N2 WILD-TYPE 
              7              78 
$`OR4N2 MUTATED`
TCGA-D3-A2JF TCGA-DA-A1I0 TCGA-DA-A3F8 TCGA-EE-A29E TCGA-EE-A29M TCGA-EE-A29S 
       48.76        20.38        15.68        39.62        44.35        55.89 
TCGA-EE-A29V TCGA-EE-A2GC TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GR TCGA-EE-A2MD 
       25.87        43.23        22.55        89.33        14.30        47.28 
TCGA-EE-A2MJ TCGA-EE-A2MT TCGA-ER-A19F TCGA-FS-A1ZQ TCGA-GN-A262 TCGA-GN-A266 
       96.23        41.59        26.37       133.55       120.46        10.09 

$`OR4N2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       43.40        65.49        23.77        11.87        12.10        58.03 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
       71.24        60.23        24.53         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
       49.74         2.70         6.38        48.89        36.03       117.17 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
      194.83       176.55        35.93       107.34        61.18        53.92 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       65.92        23.44        68.09        28.60        10.49       215.44 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       29.82         8.65        33.73        14.70        26.86         4.93 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
      109.64        78.87       168.26        63.32        47.84        13.97 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
       32.19         2.56        18.58        56.42        37.35        14.47 
TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
      345.96        17.92        46.82        78.94        24.43        39.25 
TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GK 
       58.75        47.54       314.53       135.91       182.01        54.71 
TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GS 
       55.00        75.48        90.94       101.95        13.87        55.59 
TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 
       19.56        67.13        21.67       129.24        28.80        19.76 
TCGA-EE-A2MC TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MK 
       61.51       103.27       103.17        16.96       204.62       144.76 
TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR 
      203.01       167.87        47.54       248.61        43.23       103.56 
TCGA-EE-A2MS TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD 
      136.44        53.26         4.24       122.73        25.84         3.68 
TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19J 
       26.73        13.81        23.47       138.77        12.59         6.41 
TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX 
      131.08        44.05        79.99        80.32       216.92        48.59 
TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA 
      228.59       202.62        20.91        28.08         7.76        27.68 
TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG 
       48.85       357.37        53.52        40.27        15.45         9.70 
TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZR 
       32.71        47.38        23.93       101.26        74.73        11.41 
TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ 
      148.77        53.16        26.56        49.48        27.06        27.02 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 
        0.20        76.41       117.93        84.72        64.41        62.76 
TCGA-GN-A26A TCGA-GN-A26D 
       32.48        39.58 

  OR4N2 MUTATED OR4N2 WILD-TYPE 
          10.09            0.20 
  OR4N2 MUTATED OR4N2 WILD-TYPE 
         133.55          357.37 
  OR4N2 MUTATED OR4N2 WILD-TYPE 
          42.41           48.72 
[1] "10.1 - 133.6 (42.4)" "0.2 - 357.4 (48.7)" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"OR4N2 WILD-TYPE"   "OR4N2 MUTATED"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
  "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
  "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"OR4N2 WILD-TYPE"   "OR4N2 MUTATED"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
  "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
  "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"OR4N2 WILD-TYPE"   "OR4N2 MUTATED"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
  "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
  "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
[1] "hr=" "1.1"
D77V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  OR4N2 MUTATED                    3             1
  OR4N2 WILD-TYPE                 19             0
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  OR4N2 MUTATED                                                                                          4
  OR4N2 WILD-TYPE                                                                                       28
                 vv
clus              REGIONAL LYMPH NODE
  OR4N2 MUTATED                    10
  OR4N2 WILD-TYPE                  94
D77V3, multiclass
                                                                                          clus
vv                                                                                         OR4N2 MUTATED
  DISTANT METASTASIS                                                                                   3
  PRIMARY TUMOR                                                                                        1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             4
  REGIONAL LYMPH NODE                                                                                 10
                                                                                          clus
vv                                                                                         OR4N2 WILD-TYPE
  DISTANT METASTASIS                                                                                    19
  PRIMARY TUMOR                                                                                          0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              28
  REGIONAL LYMPH NODE                                                                                   94
D77V4, binary
                 cls
clus               0  1
  OR4N2 MUTATED    2 16
  OR4N2 WILD-TYPE 58 83
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4N2 MUTATED      2   16
  OR4N2 WILD-TYPE   58   83
        clus
vv       OR4N2 MUTATED OR4N2 WILD-TYPE
  FEMALE             2              58
  MALE              16              83
                 vv
clus               M0  M1 M1A M1B M1C
  OR4N2 MUTATED    15   0   1   0   0
  OR4N2 WILD-TYPE 123   2   0   2   2
D77V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2A N2B N2C N3 NX
  OR4N2 MUTATED   12  0   0   2   0   1   0  1  0
  OR4N2 WILD-TYPE 75  2   7  13   4   9   5 13  2
D77V6, multiclass
D77V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  OR4N2 MUTATED             1       0        3        2        3         1
  OR4N2 WILD-TYPE           2      17        7       10       15         6
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  OR4N2 MUTATED           1         0         0          0          2
  OR4N2 WILD-TYPE         8         7         7          6         15
                 vv
clus              STAGE IIIC STAGE IV
  OR4N2 MUTATED            2        0
  OR4N2 WILD-TYPE         19        5
D77V8, multiclass

Clustering(78) Variable = CCDC11 MUTATION ANALYSIS
D78V1, survival
                  sevent
clus2               0  1
  CCDC11 MUTATED    9  6
  CCDC11 WILD-TYPE 64 79
  CCDC11 MUTATED CCDC11 WILD-TYPE 
              15              143 
  CCDC11 MUTATED CCDC11 WILD-TYPE 
               6               79 
$`CCDC11 MUTATED`
TCGA-D3-A1Q5 TCGA-D3-A2JF TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I1 TCGA-EE-A17X 
      112.54        48.76        48.89        36.03       194.83        29.82 
TCGA-EE-A181 TCGA-EE-A29M TCGA-EE-A2A2 TCGA-EE-A2GC TCGA-EE-A2GI TCGA-EE-A2M6 
       33.73        44.35        24.43        43.23        22.55       129.24 
TCGA-EE-A2MJ TCGA-EE-A3AG TCGA-GN-A26A 
       96.23        23.47        32.48 

$`CCDC11 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.57        71.80       121.22        28.08        31.59        43.40 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC 
       65.49        23.77        11.87        12.10        58.03        71.24 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 TCGA-D9-A149 
       60.23        24.53         9.30        21.47       148.31        49.74 
TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I4 
        2.70         6.38       117.17        20.38       176.55        35.93 
TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC 
      107.34        61.18        53.92        65.92        23.44        68.09 
TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17Z TCGA-EE-A182 
       28.60        10.49       215.44        15.68         8.65        14.70 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A 
       26.86         4.93       109.64        78.87       168.26        63.32 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N 
       47.84        13.97        39.62        32.19         2.56        18.58 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V 
       56.42        37.35        14.47        55.89       345.96        25.87 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB 
       17.92        46.82        78.94        39.25        58.75        47.54 
TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL 
      314.53       135.91       182.01        89.33        54.71        55.00 
TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS 
       75.48        90.94       101.95        13.87        14.30        55.59 
TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC 
       19.56        67.13        21.67        28.80        19.76        61.51 
TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MK 
       47.28       103.27       103.17        16.96       204.62       144.76 
TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR 
      203.01       167.87        47.54       248.61        43.23       103.56 
TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC 
      136.44        41.59        53.26         4.24       122.73        25.84 
TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F 
        3.68        26.73        13.81       138.77        12.59        26.37 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW 
        6.41       131.08        44.05        79.99        80.32       216.92 
TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 
       48.59       228.59       202.62        20.91        28.08         7.76 
TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF 
       27.68        48.85       357.37        53.52        40.27        15.45 
TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP 
        9.70        32.71        47.38        23.93       101.26        74.73 
TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW 
      133.55        11.41       148.77        53.16        26.56        49.48 
TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
       27.06        27.02         0.20        76.41       120.46       117.93 
TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26D 
       84.72        10.09        64.41        62.76        39.58 

  CCDC11 MUTATED CCDC11 WILD-TYPE 
           22.55             0.20 
  CCDC11 MUTATED CCDC11 WILD-TYPE 
          194.83           357.37 
  CCDC11 MUTATED CCDC11 WILD-TYPE 
           43.23            47.84 
[1] "22.6 - 194.8 (43.2)" "0.2 - 357.4 (47.8)" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"CCDC11 WILD-TYPE"   "CCDC11 MUTATED" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE"   "CCDC11 MUTATED" "CCDC11 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE"   "CCDC11 MUTATED"   "CCDC11 MUTATED" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE"   "CCDC11 MUTATED" "CCDC11 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE"   "CCDC11 MUTATED" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"CCDC11 WILD-TYPE"   "CCDC11 MUTATED" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE"   "CCDC11 MUTATED" "CCDC11 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"CCDC11 WILD-TYPE"   "CCDC11 MUTATED" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"CCDC11 WILD-TYPE"   "CCDC11 MUTATED" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"CCDC11 WILD-TYPE"   "CCDC11 MUTATED" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE"   "CCDC11 MUTATED" "CCDC11 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE"   "CCDC11 MUTATED" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
  "CCDC11 MUTATED" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
  "CCDC11 MUTATED" "CCDC11 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"CCDC11 WILD-TYPE"   "CCDC11 MUTATED" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE"   "CCDC11 MUTATED" "CCDC11 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE"   "CCDC11 MUTATED"   "CCDC11 MUTATED" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE"   "CCDC11 MUTATED" "CCDC11 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE"   "CCDC11 MUTATED" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"CCDC11 WILD-TYPE"   "CCDC11 MUTATED" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE"   "CCDC11 MUTATED" "CCDC11 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"CCDC11 WILD-TYPE"   "CCDC11 MUTATED" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"CCDC11 WILD-TYPE"   "CCDC11 MUTATED" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"CCDC11 WILD-TYPE"   "CCDC11 MUTATED" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE"   "CCDC11 MUTATED" "CCDC11 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE"   "CCDC11 MUTATED" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
  "CCDC11 MUTATED" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
  "CCDC11 MUTATED" "CCDC11 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"CCDC11 WILD-TYPE"   "CCDC11 MUTATED" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE"   "CCDC11 MUTATED" "CCDC11 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE"   "CCDC11 MUTATED"   "CCDC11 MUTATED" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE"   "CCDC11 MUTATED" "CCDC11 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE"   "CCDC11 MUTATED" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"CCDC11 WILD-TYPE"   "CCDC11 MUTATED" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE"   "CCDC11 MUTATED" "CCDC11 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"CCDC11 WILD-TYPE"   "CCDC11 MUTATED" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"CCDC11 WILD-TYPE"   "CCDC11 MUTATED" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"CCDC11 WILD-TYPE"   "CCDC11 MUTATED" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE"   "CCDC11 MUTATED" "CCDC11 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE"   "CCDC11 MUTATED" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
  "CCDC11 MUTATED" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
  "CCDC11 MUTATED" "CCDC11 WILD-TYPE" 
[1] "hr=" "1.3"
D78V2, continuous
                  vv
clus               DISTANT METASTASIS PRIMARY TUMOR
  CCDC11 MUTATED                    1             1
  CCDC11 WILD-TYPE                 21             0
                  vv
clus               REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  CCDC11 MUTATED                                                                                          3
  CCDC11 WILD-TYPE                                                                                       29
                  vv
clus               REGIONAL LYMPH NODE
  CCDC11 MUTATED                    10
  CCDC11 WILD-TYPE                  94
D78V3, multiclass
                                                                                          clus
vv                                                                                         CCDC11 MUTATED
  DISTANT METASTASIS                                                                                    1
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              3
  REGIONAL LYMPH NODE                                                                                  10
                                                                                          clus
vv                                                                                         CCDC11 WILD-TYPE
  DISTANT METASTASIS                                                                                     21
  PRIMARY TUMOR                                                                                           0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               29
  REGIONAL LYMPH NODE                                                                                    94
D78V4, binary
                  cls
clus                0  1
  CCDC11 MUTATED    5 10
  CCDC11 WILD-TYPE 55 89
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CCDC11 MUTATED      5   10
  CCDC11 WILD-TYPE   55   89
        clus
vv       CCDC11 MUTATED CCDC11 WILD-TYPE
  FEMALE              5               55
  MALE               10               89
                  vv
clus                M0  M1 M1A M1B M1C
  CCDC11 MUTATED    14   0   0   0   0
  CCDC11 WILD-TYPE 124   2   1   2   2
D78V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2A N2B N2C N3 NX
  CCDC11 MUTATED    9  0   1   2   0   1   0  1  0
  CCDC11 WILD-TYPE 78  2   6  13   4   9   5 13  2
D78V6, multiclass
D78V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  CCDC11 MUTATED             1       1        3        1        2         0
  CCDC11 WILD-TYPE           2      16        7       11       16         7
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  CCDC11 MUTATED           1         0         0          1          3
  CCDC11 WILD-TYPE         8         7         7          5         14
                  vv
clus               STAGE IIIC STAGE IV
  CCDC11 MUTATED            1        0
  CCDC11 WILD-TYPE         20        5
D78V8, multiclass

Clustering(79) Variable = LIN7A MUTATION ANALYSIS
D79V1, survival
                 sevent
clus2              0  1
  LIN7A MUTATED    3  5
  LIN7A WILD-TYPE 70 80
  LIN7A MUTATED LIN7A WILD-TYPE 
              8             150 
  LIN7A MUTATED LIN7A WILD-TYPE 
              5              80 
$`LIN7A MUTATED`
TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A29L TCGA-EE-A2GJ TCGA-EE-A2ML TCGA-EE-A3AB 
       33.73        26.86         2.56        89.33       203.01       122.73 
TCGA-EE-A3AF TCGA-FS-A1ZK 
       13.81        23.93 

$`LIN7A WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW 
      148.31        49.74         2.70         6.38        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       61.18        53.92        65.92        23.44        68.09        28.60 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 
       10.49       215.44        15.68        29.82         8.65        14.70 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.93       109.64        78.87       168.26        63.32        47.84 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
       13.97        39.62        32.19        44.35        18.58        56.42 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X 
       37.35        14.47        55.89       345.96        25.87        17.92 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB 
       46.82        78.94        24.43        39.25        58.75        47.54 
TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GK 
       43.23       314.53       135.91       182.01        22.55        54.71 
TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR 
       55.00        75.48        90.94       101.95        13.87        14.30 
TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 
       55.59        19.56        67.13        21.67       129.24        28.80 
TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH 
       19.76        61.51        47.28       103.27       103.17        16.96 
TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP 
      204.62        96.23       144.76       167.87        47.54       248.61 
TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA 
       43.23       103.56       136.44        41.59        53.26         4.24 
TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D 
       25.84         3.68        26.73        23.47       138.77        12.59 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
       26.37         6.41       131.08        44.05        79.99        80.32 
TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 
      216.92        48.59       228.59       202.62        20.91        28.08 
TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE 
        7.76        27.68        48.85       357.37        53.52        40.27 
TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZM TCGA-FS-A1ZP 
       15.45         9.70        32.71        47.38       101.26        74.73 
TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW 
      133.55        11.41       148.77        53.16        26.56        49.48 
TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
       27.06        27.02         0.20        76.41       120.46       117.93 
TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       84.72        10.09        64.41        62.76        32.48        39.58 

  LIN7A MUTATED LIN7A WILD-TYPE 
           2.56            0.20 
  LIN7A MUTATED LIN7A WILD-TYPE 
         203.01          357.37 
  LIN7A MUTATED LIN7A WILD-TYPE 
         30.295          47.690 
[1] "2.6 - 203.0 (30.3)" "0.2 - 357.4 (47.7)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"LIN7A WILD-TYPE"   "LIN7A MUTATED" "LIN7A WILD-TYPE"   "LIN7A MUTATED" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"LIN7A WILD-TYPE"   "LIN7A MUTATED" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE"   "LIN7A MUTATED" "LIN7A WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"LIN7A WILD-TYPE"   "LIN7A MUTATED" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE"   "LIN7A MUTATED" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE"   "LIN7A MUTATED" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"LIN7A WILD-TYPE"   "LIN7A MUTATED" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"LIN7A WILD-TYPE"   "LIN7A MUTATED" "LIN7A WILD-TYPE"   "LIN7A MUTATED" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"LIN7A WILD-TYPE"   "LIN7A MUTATED" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE"   "LIN7A MUTATED" "LIN7A WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"LIN7A WILD-TYPE"   "LIN7A MUTATED" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE"   "LIN7A MUTATED" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE"   "LIN7A MUTATED" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"LIN7A WILD-TYPE"   "LIN7A MUTATED" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"LIN7A WILD-TYPE"   "LIN7A MUTATED" "LIN7A WILD-TYPE"   "LIN7A MUTATED" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"LIN7A WILD-TYPE"   "LIN7A MUTATED" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE"   "LIN7A MUTATED" "LIN7A WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"LIN7A WILD-TYPE"   "LIN7A MUTATED" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE"   "LIN7A MUTATED" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE"   "LIN7A MUTATED" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"LIN7A WILD-TYPE"   "LIN7A MUTATED" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
[1] "hr=" "1.3"
D79V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  LIN7A MUTATED                    1             0
  LIN7A WILD-TYPE                 21             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  LIN7A MUTATED                                                                                          0
  LIN7A WILD-TYPE                                                                                       32
                 vv
clus              REGIONAL LYMPH NODE
  LIN7A MUTATED                     7
  LIN7A WILD-TYPE                  97
D79V3, multiclass
                                                                                          clus
vv                                                                                         LIN7A MUTATED
  DISTANT METASTASIS                                                                                   1
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             0
  REGIONAL LYMPH NODE                                                                                  7
                                                                                          clus
vv                                                                                         LIN7A WILD-TYPE
  DISTANT METASTASIS                                                                                    21
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              32
  REGIONAL LYMPH NODE                                                                                   97
D79V4, binary
                 cls
clus               0  1
  LIN7A MUTATED    2  6
  LIN7A WILD-TYPE 58 93
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LIN7A MUTATED      2    6
  LIN7A WILD-TYPE   58   93
        clus
vv       LIN7A MUTATED LIN7A WILD-TYPE
  FEMALE             2              58
  MALE               6              93
                 vv
clus               M0  M1 M1A M1B M1C
  LIN7A MUTATED     6   0   0   0   0
  LIN7A WILD-TYPE 132   2   1   2   2
D79V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2A N2B N2C N3 NX
  LIN7A MUTATED    5  0   0   0   0   0   0  1  0
  LIN7A WILD-TYPE 82  2   7  15   4  10   5 13  2
D79V6, multiclass
D79V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  LIN7A MUTATED             0       1        1        0        3         0
  LIN7A WILD-TYPE           3      16        9       12       15         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  LIN7A MUTATED           0         0         0          0          0
  LIN7A WILD-TYPE         9         7         7          6         17
                 vv
clus              STAGE IIIC STAGE IV
  LIN7A MUTATED            1        0
  LIN7A WILD-TYPE         20        5
D79V8, multiclass

Clustering(80) Variable = RAPGEF5 MUTATION ANALYSIS
D80V1, survival
                   sevent
clus2                0  1
  RAPGEF5 MUTATED    4  3
  RAPGEF5 WILD-TYPE 69 82
  RAPGEF5 MUTATED RAPGEF5 WILD-TYPE 
                7               151 
  RAPGEF5 MUTATED RAPGEF5 WILD-TYPE 
                3                82 
$`RAPGEF5 MUTATED`
TCGA-D3-A1Q6 TCGA-EE-A182 TCGA-EE-A2GN TCGA-EE-A2GP TCGA-EE-A2MS TCGA-EE-A3AD 
       71.80        14.70        90.94        13.87       136.44         3.68 
TCGA-EE-A3AG 
       23.47 

$`RAPGEF5 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.57       112.54       121.22        28.08        31.59        43.40 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 
       65.49        23.77        11.87        48.76        12.10        58.03 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
       71.24        60.23        24.53         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
       49.74         2.70         6.38        48.89        36.03       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
       20.38       194.83       176.55        35.93       107.34        61.18 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       53.92        65.92        23.44        68.09        28.60        10.49 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 
      215.44        15.68        29.82         8.65        33.73        26.86 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.93       109.64        78.87       168.26        63.32        47.84 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N 
       13.97        39.62        32.19         2.56        44.35        18.58 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V 
       56.42        37.35        14.47        55.89       345.96        25.87 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
       17.92        46.82        78.94        24.43        39.25        58.75 
TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI 
       47.54        43.23       314.53       135.91       182.01        22.55 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GO TCGA-EE-A2GR 
       89.33        54.71        55.00        75.48       101.95        14.30 
TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 
       55.59        19.56        67.13        21.67       129.24        28.80 
TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH 
       19.76        61.51        47.28       103.27       103.17        16.96 
TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN 
      204.62        96.23       144.76       203.01       167.87        47.54 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA 
      248.61        43.23       103.56        41.59        53.26         4.24 
TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AH TCGA-ER-A19D 
      122.73        25.84        26.73        13.81       138.77        12.59 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
       26.37         6.41       131.08        44.05        79.99        80.32 
TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 
      216.92        48.59       228.59       202.62        20.91        28.08 
TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE 
        7.76        27.68        48.85       357.37        53.52        40.27 
TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM 
       15.45         9.70        32.71        47.38        23.93       101.26 
TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU 
       74.73       133.55        11.41       148.77        53.16        26.56 
TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 
       49.48        27.06        27.02         0.20        76.41       120.46 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
      117.93        84.72        10.09        64.41        62.76        32.48 
TCGA-GN-A26D 
       39.58 

  RAPGEF5 MUTATED RAPGEF5 WILD-TYPE 
             3.68              0.20 
  RAPGEF5 MUTATED RAPGEF5 WILD-TYPE 
           136.44            357.37 
  RAPGEF5 MUTATED RAPGEF5 WILD-TYPE 
            23.47             47.54 
[1] "3.7 - 136.4 (23.5)" "0.2 - 357.4 (47.5)"
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE"   "RAPGEF5 MUTATED" "RAPGEF5 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE"   "RAPGEF5 MUTATED" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE"   "RAPGEF5 MUTATED" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
  "RAPGEF5 MUTATED" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE"   "RAPGEF5 MUTATED" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"RAPGEF5 WILD-TYPE"   "RAPGEF5 MUTATED" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
  "RAPGEF5 MUTATED" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE"   "RAPGEF5 MUTATED" "RAPGEF5 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE"   "RAPGEF5 MUTATED" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE"   "RAPGEF5 MUTATED" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
  "RAPGEF5 MUTATED" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE"   "RAPGEF5 MUTATED" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"RAPGEF5 WILD-TYPE"   "RAPGEF5 MUTATED" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
  "RAPGEF5 MUTATED" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE"   "RAPGEF5 MUTATED" "RAPGEF5 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE"   "RAPGEF5 MUTATED" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE"   "RAPGEF5 MUTATED" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
  "RAPGEF5 MUTATED" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE"   "RAPGEF5 MUTATED" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"RAPGEF5 WILD-TYPE"   "RAPGEF5 MUTATED" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
  "RAPGEF5 MUTATED" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"RAPGEF5 WILD-TYPE" "RAPGEF5 WILD-TYPE" 
[1] "hr=" "1.1"
D80V2, continuous
                   vv
clus                DISTANT METASTASIS PRIMARY TUMOR
  RAPGEF5 MUTATED                    1             0
  RAPGEF5 WILD-TYPE                 21             1
                   vv
clus                REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  RAPGEF5 MUTATED                                                                                          4
  RAPGEF5 WILD-TYPE                                                                                       28
                   vv
clus                REGIONAL LYMPH NODE
  RAPGEF5 MUTATED                     2
  RAPGEF5 WILD-TYPE                 102
D80V3, multiclass
                                                                                          clus
vv                                                                                         RAPGEF5 MUTATED
  DISTANT METASTASIS                                                                                     1
  PRIMARY TUMOR                                                                                          0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               4
  REGIONAL LYMPH NODE                                                                                    2
                                                                                          clus
vv                                                                                         RAPGEF5 WILD-TYPE
  DISTANT METASTASIS                                                                                      21
  PRIMARY TUMOR                                                                                            1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                28
  REGIONAL LYMPH NODE                                                                                    102
D80V4, binary
                   cls
clus                 0  1
  RAPGEF5 MUTATED    1  6
  RAPGEF5 WILD-TYPE 59 93
[1] "tbl2"
                   cls
clus                [,1] [,2]
  RAPGEF5 MUTATED      1    6
  RAPGEF5 WILD-TYPE   59   93
        clus
vv       RAPGEF5 MUTATED RAPGEF5 WILD-TYPE
  FEMALE               1                59
  MALE                 6                93
                   vv
clus                 M0  M1 M1A M1B M1C
  RAPGEF5 MUTATED     5   0   0   0   0
  RAPGEF5 WILD-TYPE 133   2   1   2   2
D80V5, multiclass
                   vv
clus                N0 N1 N1A N1B N2A N2B N2C N3 NX
  RAPGEF5 MUTATED    2  0   1   2   0   0   0  0  0
  RAPGEF5 WILD-TYPE 85  2   6  13   4  10   5 14  2
D80V6, multiclass
D80V7, continuous
                   vv
clus                I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  RAPGEF5 MUTATED             0       0        0        0        1         1
  RAPGEF5 WILD-TYPE           3      17       10       12       17         6
                   vv
clus                STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  RAPGEF5 MUTATED           0         0         1          0          1
  RAPGEF5 WILD-TYPE         9         7         6          6         16
                   vv
clus                STAGE IIIC STAGE IV
  RAPGEF5 MUTATED            1        0
  RAPGEF5 WILD-TYPE         20        5
D80V8, multiclass

Clustering(81) Variable = CD2 MUTATION ANALYSIS
D81V1, survival
               sevent
clus2            0  1
  CD2 MUTATED    8  6
  CD2 WILD-TYPE 65 79
  CD2 MUTATED CD2 WILD-TYPE 
           14           144 
  CD2 MUTATED CD2 WILD-TYPE 
            6            79 
$`CD2 MUTATED`
TCGA-D9-A148 TCGA-EE-A181 TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29M TCGA-EE-A29P 
      148.31        33.73        13.97        39.62        44.35        56.42 
TCGA-EE-A2GM TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2MJ TCGA-EE-A2MP TCGA-EE-A2MS 
       75.48       101.95        13.87        96.23       248.61       136.44 
TCGA-ER-A19J TCGA-GN-A266 
        6.41        10.09 

$`CD2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
       49.74         2.70         6.38        48.89        36.03       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
       20.38       194.83       176.55        35.93       107.34        61.18 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       53.92        65.92        23.44        68.09        28.60        10.49 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 
      215.44        15.68        29.82         8.65        14.70        26.86 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.93       109.64        78.87       168.26        63.32        47.84 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
       32.19         2.56        18.58        37.35        14.47        55.89 
TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
      345.96        25.87        17.92        46.82        78.94        24.43 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE 
       39.25        58.75        47.54        43.23       314.53       135.91 
TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GN 
      182.01        22.55        89.33        54.71        55.00        90.94 
TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 
       14.30        55.59        19.56        67.13        21.67       129.24 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG 
       28.80        19.76        61.51        47.28       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN 
       16.96       204.62       144.76       203.01       167.87        47.54 
TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB 
       43.23       103.56        41.59        53.26         4.24       122.73 
TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH 
       25.84         3.68        26.73        13.81        23.47       138.77 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
       12.59        26.37       131.08        44.05        79.99        80.32 
TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 
      216.92        48.59       228.59       202.62        20.91        28.08 
TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE 
        7.76        27.68        48.85       357.37        53.52        40.27 
TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM 
       15.45         9.70        32.71        47.38        23.93       101.26 
TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU 
       74.73       133.55        11.41       148.77        53.16        26.56 
TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 
       49.48        27.06        27.02         0.20        76.41       120.46 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
      117.93        84.72        64.41        62.76        32.48        39.58 

  CD2 MUTATED CD2 WILD-TYPE 
         6.41          0.20 
  CD2 MUTATED CD2 WILD-TYPE 
       248.61        357.37 
  CD2 MUTATED CD2 WILD-TYPE 
       50.385        47.540 
[1] "6.4 - 248.6 (50.4)" "0.2 - 357.4 (47.5)"
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A148    TCGA-D9-A149 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE"   "CD2 MUTATED" "CD2 WILD-TYPE" 
   TCGA-D9-A1JW    TCGA-D9-A1JX    TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-DA-A1I0    TCGA-DA-A1I1    TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-DA-A1I7    TCGA-DA-A1I8    TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-DA-A3F2    TCGA-DA-A3F3    TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A17Z    TCGA-EE-A181    TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185 
"CD2 WILD-TYPE"   "CD2 MUTATED" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A20B    TCGA-EE-A20F    TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A29D    TCGA-EE-A29E    TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M 
  "CD2 MUTATED"   "CD2 MUTATED" "CD2 WILD-TYPE" "CD2 WILD-TYPE"   "CD2 MUTATED" 
   TCGA-EE-A29N    TCGA-EE-A29P    TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S 
"CD2 WILD-TYPE"   "CD2 MUTATED" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A29T    TCGA-EE-A29V    TCGA-EE-A29X    TCGA-EE-A2A0    TCGA-EE-A2A1 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6    TCGA-EE-A2GB    TCGA-EE-A2GC 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A2GD    TCGA-EE-A2GE    TCGA-EE-A2GH    TCGA-EE-A2GI    TCGA-EE-A2GJ 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A2GK    TCGA-EE-A2GL    TCGA-EE-A2GM    TCGA-EE-A2GN    TCGA-EE-A2GO 
"CD2 WILD-TYPE" "CD2 WILD-TYPE"   "CD2 MUTATED" "CD2 WILD-TYPE"   "CD2 MUTATED" 
   TCGA-EE-A2GP    TCGA-EE-A2GR    TCGA-EE-A2GS    TCGA-EE-A2GT    TCGA-EE-A2GU 
  "CD2 MUTATED" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A2M5    TCGA-EE-A2M6    TCGA-EE-A2M7    TCGA-EE-A2M8    TCGA-EE-A2MC 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A2MD    TCGA-EE-A2ME    TCGA-EE-A2MG    TCGA-EE-A2MH    TCGA-EE-A2MI 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A2MJ    TCGA-EE-A2MK    TCGA-EE-A2ML    TCGA-EE-A2MM    TCGA-EE-A2MN 
  "CD2 MUTATED" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A2MP    TCGA-EE-A2MQ    TCGA-EE-A2MR    TCGA-EE-A2MS    TCGA-EE-A2MT 
  "CD2 MUTATED" "CD2 WILD-TYPE" "CD2 WILD-TYPE"   "CD2 MUTATED" "CD2 WILD-TYPE" 
   TCGA-EE-A2MU    TCGA-EE-A3AA    TCGA-EE-A3AB    TCGA-EE-A3AC    TCGA-EE-A3AD 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A3AE    TCGA-EE-A3AF    TCGA-EE-A3AG    TCGA-EE-A3AH    TCGA-ER-A19D 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19N    TCGA-ER-A1A1 
"CD2 WILD-TYPE"   "CD2 MUTATED" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-ER-A3ET    TCGA-FS-A1YW    TCGA-FS-A1YX    TCGA-FS-A1YY    TCGA-FS-A1Z0 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-FS-A1Z3    TCGA-FS-A1Z4    TCGA-FS-A1Z7    TCGA-FS-A1ZA    TCGA-FS-A1ZB 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-FS-A1ZC    TCGA-FS-A1ZD    TCGA-FS-A1ZE    TCGA-FS-A1ZF    TCGA-FS-A1ZG 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-FS-A1ZH    TCGA-FS-A1ZJ    TCGA-FS-A1ZK    TCGA-FS-A1ZM    TCGA-FS-A1ZP 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-FS-A1ZQ    TCGA-FS-A1ZR    TCGA-FS-A1ZS    TCGA-FS-A1ZT    TCGA-FS-A1ZU 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-FS-A1ZW    TCGA-FS-A1ZY    TCGA-FS-A1ZZ    TCGA-FW-A3I3    TCGA-GN-A261 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265    TCGA-GN-A266    TCGA-GN-A267 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE"   "CD2 MUTATED" "CD2 WILD-TYPE" 
   TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A148    TCGA-D9-A149 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE"   "CD2 MUTATED" "CD2 WILD-TYPE" 
   TCGA-D9-A1JW    TCGA-D9-A1JX    TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-DA-A1I0    TCGA-DA-A1I1    TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-DA-A1I7    TCGA-DA-A1I8    TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-DA-A3F2    TCGA-DA-A3F3    TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A17Z    TCGA-EE-A181    TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185 
"CD2 WILD-TYPE"   "CD2 MUTATED" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A20B    TCGA-EE-A20F    TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A29D    TCGA-EE-A29E    TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M 
  "CD2 MUTATED"   "CD2 MUTATED" "CD2 WILD-TYPE" "CD2 WILD-TYPE"   "CD2 MUTATED" 
   TCGA-EE-A29N    TCGA-EE-A29P    TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S 
"CD2 WILD-TYPE"   "CD2 MUTATED" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A29T    TCGA-EE-A29V    TCGA-EE-A29X    TCGA-EE-A2A0    TCGA-EE-A2A1 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6    TCGA-EE-A2GB    TCGA-EE-A2GC 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A2GD    TCGA-EE-A2GE    TCGA-EE-A2GH    TCGA-EE-A2GI    TCGA-EE-A2GJ 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A2GK    TCGA-EE-A2GL    TCGA-EE-A2GM    TCGA-EE-A2GN    TCGA-EE-A2GO 
"CD2 WILD-TYPE" "CD2 WILD-TYPE"   "CD2 MUTATED" "CD2 WILD-TYPE"   "CD2 MUTATED" 
   TCGA-EE-A2GP    TCGA-EE-A2GR    TCGA-EE-A2GS    TCGA-EE-A2GT    TCGA-EE-A2GU 
  "CD2 MUTATED" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A2M5    TCGA-EE-A2M6    TCGA-EE-A2M7    TCGA-EE-A2M8    TCGA-EE-A2MC 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A2MD    TCGA-EE-A2ME    TCGA-EE-A2MG    TCGA-EE-A2MH    TCGA-EE-A2MI 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A2MJ    TCGA-EE-A2MK    TCGA-EE-A2ML    TCGA-EE-A2MM    TCGA-EE-A2MN 
  "CD2 MUTATED" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A2MP    TCGA-EE-A2MQ    TCGA-EE-A2MR    TCGA-EE-A2MS    TCGA-EE-A2MT 
  "CD2 MUTATED" "CD2 WILD-TYPE" "CD2 WILD-TYPE"   "CD2 MUTATED" "CD2 WILD-TYPE" 
   TCGA-EE-A2MU    TCGA-EE-A3AA    TCGA-EE-A3AB    TCGA-EE-A3AC    TCGA-EE-A3AD 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A3AE    TCGA-EE-A3AF    TCGA-EE-A3AG    TCGA-EE-A3AH    TCGA-ER-A19D 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19N    TCGA-ER-A1A1 
"CD2 WILD-TYPE"   "CD2 MUTATED" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-ER-A3ET    TCGA-FS-A1YW    TCGA-FS-A1YX    TCGA-FS-A1YY    TCGA-FS-A1Z0 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-FS-A1Z3    TCGA-FS-A1Z4    TCGA-FS-A1Z7    TCGA-FS-A1ZA    TCGA-FS-A1ZB 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-FS-A1ZC    TCGA-FS-A1ZD    TCGA-FS-A1ZE    TCGA-FS-A1ZF    TCGA-FS-A1ZG 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-FS-A1ZH    TCGA-FS-A1ZJ    TCGA-FS-A1ZK    TCGA-FS-A1ZM    TCGA-FS-A1ZP 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-FS-A1ZQ    TCGA-FS-A1ZR    TCGA-FS-A1ZS    TCGA-FS-A1ZT    TCGA-FS-A1ZU 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-FS-A1ZW    TCGA-FS-A1ZY    TCGA-FS-A1ZZ    TCGA-FW-A3I3    TCGA-GN-A261 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265    TCGA-GN-A266    TCGA-GN-A267 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE"   "CD2 MUTATED" "CD2 WILD-TYPE" 
   TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A148    TCGA-D9-A149 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE"   "CD2 MUTATED" "CD2 WILD-TYPE" 
   TCGA-D9-A1JW    TCGA-D9-A1JX    TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-DA-A1I0    TCGA-DA-A1I1    TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-DA-A1I7    TCGA-DA-A1I8    TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-DA-A3F2    TCGA-DA-A3F3    TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A17Z    TCGA-EE-A181    TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185 
"CD2 WILD-TYPE"   "CD2 MUTATED" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A20B    TCGA-EE-A20F    TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A29D    TCGA-EE-A29E    TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M 
  "CD2 MUTATED"   "CD2 MUTATED" "CD2 WILD-TYPE" "CD2 WILD-TYPE"   "CD2 MUTATED" 
   TCGA-EE-A29N    TCGA-EE-A29P    TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S 
"CD2 WILD-TYPE"   "CD2 MUTATED" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A29T    TCGA-EE-A29V    TCGA-EE-A29X    TCGA-EE-A2A0    TCGA-EE-A2A1 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6    TCGA-EE-A2GB    TCGA-EE-A2GC 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A2GD    TCGA-EE-A2GE    TCGA-EE-A2GH    TCGA-EE-A2GI    TCGA-EE-A2GJ 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A2GK    TCGA-EE-A2GL    TCGA-EE-A2GM    TCGA-EE-A2GN    TCGA-EE-A2GO 
"CD2 WILD-TYPE" "CD2 WILD-TYPE"   "CD2 MUTATED" "CD2 WILD-TYPE"   "CD2 MUTATED" 
   TCGA-EE-A2GP    TCGA-EE-A2GR    TCGA-EE-A2GS    TCGA-EE-A2GT    TCGA-EE-A2GU 
  "CD2 MUTATED" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A2M5    TCGA-EE-A2M6    TCGA-EE-A2M7    TCGA-EE-A2M8    TCGA-EE-A2MC 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A2MD    TCGA-EE-A2ME    TCGA-EE-A2MG    TCGA-EE-A2MH    TCGA-EE-A2MI 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A2MJ    TCGA-EE-A2MK    TCGA-EE-A2ML    TCGA-EE-A2MM    TCGA-EE-A2MN 
  "CD2 MUTATED" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A2MP    TCGA-EE-A2MQ    TCGA-EE-A2MR    TCGA-EE-A2MS    TCGA-EE-A2MT 
  "CD2 MUTATED" "CD2 WILD-TYPE" "CD2 WILD-TYPE"   "CD2 MUTATED" "CD2 WILD-TYPE" 
   TCGA-EE-A2MU    TCGA-EE-A3AA    TCGA-EE-A3AB    TCGA-EE-A3AC    TCGA-EE-A3AD 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-EE-A3AE    TCGA-EE-A3AF    TCGA-EE-A3AG    TCGA-EE-A3AH    TCGA-ER-A19D 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19N    TCGA-ER-A1A1 
"CD2 WILD-TYPE"   "CD2 MUTATED" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-ER-A3ET    TCGA-FS-A1YW    TCGA-FS-A1YX    TCGA-FS-A1YY    TCGA-FS-A1Z0 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-FS-A1Z3    TCGA-FS-A1Z4    TCGA-FS-A1Z7    TCGA-FS-A1ZA    TCGA-FS-A1ZB 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-FS-A1ZC    TCGA-FS-A1ZD    TCGA-FS-A1ZE    TCGA-FS-A1ZF    TCGA-FS-A1ZG 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-FS-A1ZH    TCGA-FS-A1ZJ    TCGA-FS-A1ZK    TCGA-FS-A1ZM    TCGA-FS-A1ZP 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-FS-A1ZQ    TCGA-FS-A1ZR    TCGA-FS-A1ZS    TCGA-FS-A1ZT    TCGA-FS-A1ZU 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-FS-A1ZW    TCGA-FS-A1ZY    TCGA-FS-A1ZZ    TCGA-FW-A3I3    TCGA-GN-A261 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
   TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265    TCGA-GN-A266    TCGA-GN-A267 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE"   "CD2 MUTATED" "CD2 WILD-TYPE" 
   TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
"CD2 WILD-TYPE" "CD2 WILD-TYPE" "CD2 WILD-TYPE" 
[1] "hr=" "1.4"
D81V2, continuous
               vv
clus            DISTANT METASTASIS PRIMARY TUMOR
  CD2 MUTATED                    0             1
  CD2 WILD-TYPE                 22             0
               vv
clus            REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  CD2 MUTATED                                                                                          4
  CD2 WILD-TYPE                                                                                       28
               vv
clus            REGIONAL LYMPH NODE
  CD2 MUTATED                     9
  CD2 WILD-TYPE                  95
D81V3, multiclass
                                                                                          clus
vv                                                                                         CD2 MUTATED
  DISTANT METASTASIS                                                                                 0
  PRIMARY TUMOR                                                                                      1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)           4
  REGIONAL LYMPH NODE                                                                                9
                                                                                          clus
vv                                                                                         CD2 WILD-TYPE
  DISTANT METASTASIS                                                                                  22
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            28
  REGIONAL LYMPH NODE                                                                                 95
D81V4, binary
               cls
clus             0  1
  CD2 MUTATED    6  8
  CD2 WILD-TYPE 54 91
[1] "tbl2"
               cls
clus            [,1] [,2]
  CD2 MUTATED      6    8
  CD2 WILD-TYPE   54   91
        clus
vv       CD2 MUTATED CD2 WILD-TYPE
  FEMALE           6            54
  MALE             8            91
               vv
clus             M0  M1 M1A M1B M1C
  CD2 MUTATED    11   1   0   1   0
  CD2 WILD-TYPE 127   1   1   1   2
D81V5, multiclass
               vv
clus            N0 N1 N1A N1B N2A N2B N2C N3 NX
  CD2 MUTATED    8  0   1   2   0   0   0  2  0
  CD2 WILD-TYPE 79  2   6  13   4  10   5 12  2
D81V6, multiclass
D81V7, continuous
               vv
clus            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  CD2 MUTATED             0       1        0        1        4         0
  CD2 WILD-TYPE           3      16       10       11       14         7
               vv
clus            STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  CD2 MUTATED           0         2         0          0          2          1
  CD2 WILD-TYPE         9         5         7          6         15         20
               vv
clus            STAGE IV
  CD2 MUTATED          1
  CD2 WILD-TYPE        4
D81V8, multiclass

Clustering(82) Variable = C2ORF40 MUTATION ANALYSIS
D82V1, survival
                   sevent
clus2                0  1
  C2ORF40 MUTATED    2  2
  C2ORF40 WILD-TYPE 71 83
  C2ORF40 MUTATED C2ORF40 WILD-TYPE 
                4               154 
  C2ORF40 MUTATED C2ORF40 WILD-TYPE 
                2                83 
$`C2ORF40 MUTATED`
TCGA-D9-A149 TCGA-EE-A2GR TCGA-EE-A2MM TCGA-GN-A266 
       49.74        14.30       167.87        10.09 

$`C2ORF40 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
      148.31         2.70         6.38        48.89        36.03       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
       20.38       194.83       176.55        35.93       107.34        61.18 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       53.92        65.92        23.44        68.09        28.60        10.49 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 
      215.44        15.68        29.82         8.65        33.73        14.70 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A 
       26.86         4.93       109.64        78.87       168.26        63.32 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M 
       47.84        13.97        39.62        32.19         2.56        44.35 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T 
       18.58        56.42        37.35        14.47        55.89       345.96 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
       25.87        17.92        46.82        78.94        24.43        39.25 
TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH 
       58.75        47.54        43.23       314.53       135.91       182.01 
TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN 
       22.55        89.33        54.71        55.00        75.48        90.94 
TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 
      101.95        13.87        55.59        19.56        67.13        21.67 
TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME 
      129.24        28.80        19.76        61.51        47.28       103.27 
TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML 
      103.17        16.96       204.62        96.23       144.76       203.01 
TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT 
       47.54       248.61        43.23       103.56       136.44        41.59 
TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE 
       53.26         4.24       122.73        25.84         3.68        26.73 
TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       13.81        23.47       138.77        12.59        26.37         6.41 
TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX 
      131.08        44.05        79.99        80.32       216.92        48.59 
TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA 
      228.59       202.62        20.91        28.08         7.76        27.68 
TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG 
       48.85       357.37        53.52        40.27        15.45         9.70 
TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ 
       32.71        47.38        23.93       101.26        74.73       133.55 
TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY 
       11.41       148.77        53.16        26.56        49.48        27.06 
TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
       27.02         0.20        76.41       120.46       117.93        84.72 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       64.41        62.76        32.48        39.58 

  C2ORF40 MUTATED C2ORF40 WILD-TYPE 
            10.09              0.20 
  C2ORF40 MUTATED C2ORF40 WILD-TYPE 
           167.87            357.37 
  C2ORF40 MUTATED C2ORF40 WILD-TYPE 
            32.02             47.54 
[1] "10.1 - 167.9 (32.0)" "0.2 - 357.4 (47.5)" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE"   "C2ORF40 MUTATED" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"C2ORF40 WILD-TYPE"   "C2ORF40 MUTATED" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE"   "C2ORF40 MUTATED" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"C2ORF40 WILD-TYPE"   "C2ORF40 MUTATED" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE"   "C2ORF40 MUTATED" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"C2ORF40 WILD-TYPE"   "C2ORF40 MUTATED" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE"   "C2ORF40 MUTATED" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"C2ORF40 WILD-TYPE"   "C2ORF40 MUTATED" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE"   "C2ORF40 MUTATED" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"C2ORF40 WILD-TYPE"   "C2ORF40 MUTATED" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE"   "C2ORF40 MUTATED" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"C2ORF40 WILD-TYPE"   "C2ORF40 MUTATED" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
[1] "hr=" "1.1"
D82V2, continuous
                   vv
clus                DISTANT METASTASIS PRIMARY TUMOR
  C2ORF40 MUTATED                    0             0
  C2ORF40 WILD-TYPE                 22             1
                   vv
clus                REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  C2ORF40 MUTATED                                                                                          3
  C2ORF40 WILD-TYPE                                                                                       29
                   vv
clus                REGIONAL LYMPH NODE
  C2ORF40 MUTATED                     1
  C2ORF40 WILD-TYPE                 103
D82V3, multiclass
                                                                                          clus
vv                                                                                         C2ORF40 MUTATED
  DISTANT METASTASIS                                                                                     0
  PRIMARY TUMOR                                                                                          0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               3
  REGIONAL LYMPH NODE                                                                                    1
                                                                                          clus
vv                                                                                         C2ORF40 WILD-TYPE
  DISTANT METASTASIS                                                                                      22
  PRIMARY TUMOR                                                                                            1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                29
  REGIONAL LYMPH NODE                                                                                    103
D82V4, binary
                   cls
clus                 0  1
  C2ORF40 MUTATED    2  2
  C2ORF40 WILD-TYPE 58 97
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C2ORF40 MUTATED      2    2
  C2ORF40 WILD-TYPE   58   97
        clus
vv       C2ORF40 MUTATED C2ORF40 WILD-TYPE
  FEMALE               2                58
  MALE                 2                97
                   vv
clus                 M0  M1 M1A M1B M1C
  C2ORF40 MUTATED     3   0   0   0   0
  C2ORF40 WILD-TYPE 135   2   1   2   2
D82V5, multiclass
                   vv
clus                N0 N1 N1A N1B N2A N2B N2C N3 NX
  C2ORF40 MUTATED    2  0   0   1   0   0   0  0  0
  C2ORF40 WILD-TYPE 85  2   7  14   4  10   5 14  2
D82V6, multiclass
D82V7, continuous
                   vv
clus                I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  C2ORF40 MUTATED             0       1        0        0        1         0
  C2ORF40 WILD-TYPE           3      16       10       12       17         7
                   vv
clus                STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  C2ORF40 MUTATED           0         0         0          0          0
  C2ORF40 WILD-TYPE         9         7         7          6         17
                   vv
clus                STAGE IIIC STAGE IV
  C2ORF40 MUTATED            0        0
  C2ORF40 WILD-TYPE         21        5
D82V8, multiclass
[1] "Remove cluster labels:" "C2ORF40 MUTATED"       
clus
  C2ORF40 MUTATED C2ORF40 WILD-TYPE 
                2               137 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-DA-A1HV        TCGA-DA-A1HW 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29P 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A29X        TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2A5        TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2GD        TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2GJ        TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2GN        TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GS 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MN 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AE        TCGA-EE-A3AH 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-ER-A19D        TCGA-ER-A19J        TCGA-ER-A19O        TCGA-ER-A1A1 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z4        TCGA-FS-A1Z7        TCGA-FS-A1ZA 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZQ 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ        TCGA-FW-A3I3 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-GN-A261        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
"C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" "C2ORF40 WILD-TYPE" 
       TCGA-GN-A26D 
"C2ORF40 WILD-TYPE" 

Clustering(83) Variable = SGCZ MUTATION ANALYSIS
D83V1, survival
                sevent
clus2             0  1
  SGCZ MUTATED    6 10
  SGCZ WILD-TYPE 67 75
  SGCZ MUTATED SGCZ WILD-TYPE 
            16            142 
  SGCZ MUTATED SGCZ WILD-TYPE 
            10             75 
$`SGCZ MUTATED`
TCGA-D3-A3MV TCGA-DA-A1I1 TCGA-EE-A181 TCGA-EE-A29N TCGA-EE-A29R TCGA-EE-A2GB 
       21.47       194.83        33.73        18.58        14.47        47.54 
TCGA-EE-A2GJ TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A3AF TCGA-EE-A3AG 
       89.33        19.76        61.51        47.28        13.81        23.47 
TCGA-ER-A19L TCGA-FS-A1Z3 TCGA-FS-A1ZQ TCGA-GN-A266 
      131.08        20.91       133.55        10.09 

$`SGCZ WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D9-A148 
       58.03        71.24        60.23        24.53         9.30       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
       49.74         2.70         6.38        48.89        36.03       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       20.38       176.55        35.93       107.34        61.18        53.92 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       65.92        23.44        68.09        28.60        10.49       215.44 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       15.68        29.82         8.65        14.70        26.86         4.93 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
      109.64        78.87       168.26        63.32        47.84        13.97 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29P TCGA-EE-A29Q 
       39.62        32.19         2.56        44.35        56.42        37.35 
TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
       55.89       345.96        25.87        17.92        46.82        78.94 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE 
       24.43        39.25        58.75        43.23       314.53       135.91 
TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN 
      182.01        22.55        54.71        55.00        75.48        90.94 
TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU 
      101.95        13.87        14.30        55.59        19.56        67.13 
TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH 
       21.67       129.24        28.80       103.27       103.17        16.96 
TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN 
      204.62        96.23       144.76       203.01       167.87        47.54 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU 
      248.61        43.23       103.56       136.44        41.59        53.26 
TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AH 
        4.24       122.73        25.84         3.68        26.73       138.77 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
       12.59        26.37         6.41        44.05        79.99        80.32 
TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z4 TCGA-FS-A1Z7 
      216.92        48.59       228.59       202.62        28.08         7.76 
TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF 
       27.68        48.85       357.37        53.52        40.27        15.45 
TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP 
        9.70        32.71        47.38        23.93       101.26        74.73 
TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY 
       11.41       148.77        53.16        26.56        49.48        27.06 
TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
       27.02         0.20        76.41       120.46       117.93        84.72 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       64.41        62.76        32.48        39.58 

  SGCZ MUTATED SGCZ WILD-TYPE 
         10.09           0.20 
  SGCZ MUTATED SGCZ WILD-TYPE 
        194.83         357.37 
  SGCZ MUTATED SGCZ WILD-TYPE 
        28.600         48.675 
[1] "10.1 - 194.8 (28.6)" "0.2 - 357.4 (48.7)" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"SGCZ WILD-TYPE"   "SGCZ MUTATED" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE"   "SGCZ MUTATED" "SGCZ WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"SGCZ WILD-TYPE"   "SGCZ MUTATED" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE"   "SGCZ MUTATED" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE"   "SGCZ MUTATED" "SGCZ WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
  "SGCZ MUTATED" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE"   "SGCZ MUTATED" "SGCZ WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
  "SGCZ MUTATED"   "SGCZ MUTATED"   "SGCZ MUTATED" "SGCZ WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE"   "SGCZ MUTATED" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
  "SGCZ MUTATED" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"SGCZ WILD-TYPE"   "SGCZ MUTATED" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"SGCZ WILD-TYPE"   "SGCZ MUTATED" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
  "SGCZ MUTATED" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"SGCZ WILD-TYPE"   "SGCZ MUTATED" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"SGCZ WILD-TYPE"   "SGCZ MUTATED" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE"   "SGCZ MUTATED" "SGCZ WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"SGCZ WILD-TYPE"   "SGCZ MUTATED" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE"   "SGCZ MUTATED" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE"   "SGCZ MUTATED" "SGCZ WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
  "SGCZ MUTATED" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE"   "SGCZ MUTATED" "SGCZ WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
  "SGCZ MUTATED"   "SGCZ MUTATED"   "SGCZ MUTATED" "SGCZ WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE"   "SGCZ MUTATED" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
  "SGCZ MUTATED" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"SGCZ WILD-TYPE"   "SGCZ MUTATED" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"SGCZ WILD-TYPE"   "SGCZ MUTATED" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
  "SGCZ MUTATED" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"SGCZ WILD-TYPE"   "SGCZ MUTATED" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"SGCZ WILD-TYPE"   "SGCZ MUTATED" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE"   "SGCZ MUTATED" "SGCZ WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"SGCZ WILD-TYPE"   "SGCZ MUTATED" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE"   "SGCZ MUTATED" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE"   "SGCZ MUTATED" "SGCZ WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
  "SGCZ MUTATED" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE"   "SGCZ MUTATED" "SGCZ WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
  "SGCZ MUTATED"   "SGCZ MUTATED"   "SGCZ MUTATED" "SGCZ WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE"   "SGCZ MUTATED" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
  "SGCZ MUTATED" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"SGCZ WILD-TYPE"   "SGCZ MUTATED" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"SGCZ WILD-TYPE"   "SGCZ MUTATED" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
  "SGCZ MUTATED" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"SGCZ WILD-TYPE"   "SGCZ MUTATED" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
[1] "hr=" "1.5"
D83V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  SGCZ MUTATED                    2             0
  SGCZ WILD-TYPE                 20             1
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  SGCZ MUTATED                                                                                          4
  SGCZ WILD-TYPE                                                                                       28
                vv
clus             REGIONAL LYMPH NODE
  SGCZ MUTATED                    10
  SGCZ WILD-TYPE                  94
D83V3, multiclass
                                                                                          clus
vv                                                                                         SGCZ MUTATED
  DISTANT METASTASIS                                                                                  2
  PRIMARY TUMOR                                                                                       0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            4
  REGIONAL LYMPH NODE                                                                                10
                                                                                          clus
vv                                                                                         SGCZ WILD-TYPE
  DISTANT METASTASIS                                                                                   20
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             28
  REGIONAL LYMPH NODE                                                                                  94
D83V4, binary
                cls
clus              0  1
  SGCZ MUTATED    6 10
  SGCZ WILD-TYPE 54 89
[1] "tbl2"
                cls
clus             [,1] [,2]
  SGCZ MUTATED      6   10
  SGCZ WILD-TYPE   54   89
        clus
vv       SGCZ MUTATED SGCZ WILD-TYPE
  FEMALE            6             54
  MALE             10             89
                vv
clus              M0  M1 M1A M1B M1C
  SGCZ MUTATED    11   0   0   0   0
  SGCZ WILD-TYPE 127   2   1   2   2
D83V5, multiclass
                vv
clus             N0 N1 N1A N1B N2A N2B N2C N3 NX
  SGCZ MUTATED    6  1   1   1   1   0   0  1  0
  SGCZ WILD-TYPE 81  1   6  14   3  10   5 13  2
D83V6, multiclass
D83V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  SGCZ MUTATED             1       1        1        0        2         0
  SGCZ WILD-TYPE           2      16        9       12       16         7
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  SGCZ MUTATED           0         0         1          1          1          2
  SGCZ WILD-TYPE         9         7         6          5         16         19
                vv
clus             STAGE IV
  SGCZ MUTATED          0
  SGCZ WILD-TYPE        5
D83V8, multiclass

Clustering(84) Variable = SPANXN2 MUTATION ANALYSIS
D84V1, survival
                   sevent
clus2                0  1
  SPANXN2 MUTATED    3  9
  SPANXN2 WILD-TYPE 70 76
  SPANXN2 MUTATED SPANXN2 WILD-TYPE 
               12               146 
  SPANXN2 MUTATED SPANXN2 WILD-TYPE 
                9                76 
$`SPANXN2 MUTATED`
TCGA-DA-A1I4 TCGA-DA-A3F8 TCGA-EE-A181 TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A2GS 
       35.93        15.68        33.73        13.97        39.62        55.59 
TCGA-FS-A1Z3 TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZZ TCGA-GN-A266 TCGA-GN-A267 
       20.91        74.73       133.55        27.02        10.09        64.41 

$`SPANXN2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW 
      148.31        49.74         2.70         6.38        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I5 TCGA-DA-A1I7 
      117.17        20.38       194.83       176.55       107.34        61.18 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       53.92        65.92        23.44        68.09        28.60        10.49 
TCGA-DA-A3F5 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
      215.44        29.82         8.65        14.70        26.86         4.93 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29H 
      109.64        78.87       168.26        63.32        47.84        32.19 
TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
        2.56        44.35        18.58        56.42        37.35        14.47 
TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
       55.89       345.96        25.87        17.92        46.82        78.94 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD 
       24.43        39.25        58.75        47.54        43.23       314.53 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL 
      135.91       182.01        22.55        89.33        54.71        55.00 
TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GT 
       75.48        90.94       101.95        13.87        14.30        19.56 
TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC 
       67.13        21.67       129.24        28.80        19.76        61.51 
TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ 
       47.28       103.27       103.17        16.96       204.62        96.23 
TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ 
      144.76       203.01       167.87        47.54       248.61        43.23 
TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB 
      103.56       136.44        41.59        53.26         4.24       122.73 
TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH 
       25.84         3.68        26.73        13.81        23.47       138.77 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 
       12.59        26.37         6.41       131.08        44.05        79.99 
TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z4 
       80.32       216.92        48.59       228.59       202.62        28.08 
TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE 
        7.76        27.68        48.85       357.37        53.52        40.27 
TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM 
       15.45         9.70        32.71        47.38        23.93       101.26 
TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY 
       11.41       148.77        53.16        26.56        49.48        27.06 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A268 
        0.20        76.41       120.46       117.93        84.72        62.76 
TCGA-GN-A26A TCGA-GN-A26D 
       32.48        39.58 

  SPANXN2 MUTATED SPANXN2 WILD-TYPE 
            10.09              0.20 
  SPANXN2 MUTATED SPANXN2 WILD-TYPE 
           133.55            357.37 
  SPANXN2 MUTATED SPANXN2 WILD-TYPE 
           34.830            48.215 
[1] "10.1 - 133.6 (34.8)" "0.2 - 357.4 (48.2)" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
  "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE"   "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"SPANXN2 WILD-TYPE"   "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE"   "SPANXN2 MUTATED"   "SPANXN2 MUTATED" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE"   "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"SPANXN2 WILD-TYPE"   "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE"   "SPANXN2 MUTATED" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
  "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE"   "SPANXN2 MUTATED" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"SPANXN2 WILD-TYPE"   "SPANXN2 MUTATED"   "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
  "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE"   "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"SPANXN2 WILD-TYPE"   "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE"   "SPANXN2 MUTATED"   "SPANXN2 MUTATED" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE"   "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"SPANXN2 WILD-TYPE"   "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE"   "SPANXN2 MUTATED" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
  "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE"   "SPANXN2 MUTATED" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"SPANXN2 WILD-TYPE"   "SPANXN2 MUTATED"   "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
  "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE"   "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"SPANXN2 WILD-TYPE"   "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE"   "SPANXN2 MUTATED"   "SPANXN2 MUTATED" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE"   "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"SPANXN2 WILD-TYPE"   "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE"   "SPANXN2 MUTATED" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
  "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE"   "SPANXN2 MUTATED" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"SPANXN2 WILD-TYPE"   "SPANXN2 MUTATED"   "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
[1] "hr=" "2.1"
D84V2, continuous
                   vv
clus                DISTANT METASTASIS PRIMARY TUMOR
  SPANXN2 MUTATED                    3             0
  SPANXN2 WILD-TYPE                 19             1
                   vv
clus                REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  SPANXN2 MUTATED                                                                                          2
  SPANXN2 WILD-TYPE                                                                                       30
                   vv
clus                REGIONAL LYMPH NODE
  SPANXN2 MUTATED                     8
  SPANXN2 WILD-TYPE                  96
D84V3, multiclass
                                                                                          clus
vv                                                                                         SPANXN2 MUTATED
  DISTANT METASTASIS                                                                                     3
  PRIMARY TUMOR                                                                                          0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               2
  REGIONAL LYMPH NODE                                                                                    8
                                                                                          clus
vv                                                                                         SPANXN2 WILD-TYPE
  DISTANT METASTASIS                                                                                      19
  PRIMARY TUMOR                                                                                            1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                30
  REGIONAL LYMPH NODE                                                                                     96
D84V4, binary
                   cls
clus                 0  1
  SPANXN2 MUTATED    4  9
  SPANXN2 WILD-TYPE 56 90
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SPANXN2 MUTATED      4    9
  SPANXN2 WILD-TYPE   56   90
        clus
vv       SPANXN2 MUTATED SPANXN2 WILD-TYPE
  FEMALE               4                56
  MALE                 9                90
                   vv
clus                 M0  M1 M1A M1B M1C
  SPANXN2 MUTATED    11   0   0   0   0
  SPANXN2 WILD-TYPE 127   2   1   2   2
D84V5, multiclass
                   vv
clus                N0 N1 N1A N1B N2A N2B N2C N3 NX
  SPANXN2 MUTATED    5  0   1   3   0   2   0  0  0
  SPANXN2 WILD-TYPE 82  2   6  12   4   8   5 14  2
D84V6, multiclass
D84V7, continuous
                   vv
clus                I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  SPANXN2 MUTATED             1       0        0        1        2         0
  SPANXN2 WILD-TYPE           2      17       10       11       16         7
                   vv
clus                STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  SPANXN2 MUTATED           1         0         0          1          4
  SPANXN2 WILD-TYPE         8         7         7          5         13
                   vv
clus                STAGE IIIC STAGE IV
  SPANXN2 MUTATED            1        0
  SPANXN2 WILD-TYPE         20        5
D84V8, multiclass

Clustering(85) Variable = TLL1 MUTATION ANALYSIS
D85V1, survival
                sevent
clus2             0  1
  TLL1 MUTATED   15 15
  TLL1 WILD-TYPE 58 70
  TLL1 MUTATED TLL1 WILD-TYPE 
            30            128 
  TLL1 MUTATED TLL1 WILD-TYPE 
            15             70 
$`TLL1 MUTATED`
TCGA-D9-A1JX TCGA-DA-A1I5 TCGA-DA-A3F8 TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H 
        6.38       107.34        15.68        13.97        39.62        32.19 
TCGA-EE-A29R TCGA-EE-A29V TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GH 
       14.47        25.87        58.75        47.54        43.23       182.01 
TCGA-EE-A2GR TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2MG 
       14.30        67.13        21.67        61.51        47.28       103.17 
TCGA-EE-A2MH TCGA-EE-A2MJ TCGA-EE-A2MS TCGA-EE-A2MU TCGA-EE-A3AE TCGA-ER-A19F 
       16.96        96.23       136.44        53.26        26.73        26.37 
TCGA-FS-A1ZA TCGA-FS-A1ZC TCGA-FS-A1ZF TCGA-FS-A1ZZ TCGA-GN-A266 TCGA-GN-A268 
       27.68       357.37        15.45        27.02        10.09        62.76 

$`TLL1 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
      148.31        49.74         2.70        48.89        36.03       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 
       20.38       194.83       176.55        35.93        61.18        53.92 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       65.92        23.44        68.09        28.60        10.49       215.44 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       29.82         8.65        33.73        14.70        26.86         4.93 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29L 
      109.64        78.87       168.26        63.32        47.84         2.56 
TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29T 
       44.35        18.58        56.42        37.35        55.89       345.96 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2GD 
       17.92        46.82        78.94        24.43        39.25       314.53 
TCGA-EE-A2GE TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM 
      135.91        22.55        89.33        54.71        55.00        75.48 
TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2M6 
       90.94       101.95        13.87        55.59        19.56       129.24 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2ME TCGA-EE-A2MI TCGA-EE-A2MK TCGA-EE-A2ML 
       28.80        19.76       103.27       204.62       144.76       203.01 
TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MT 
      167.87        47.54       248.61        43.23       103.56        41.59 
TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AF TCGA-EE-A3AG 
        4.24       122.73        25.84         3.68        13.81        23.47 
TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 
      138.77        12.59         6.41       131.08        44.05        79.99 
TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 
       80.32       216.92        48.59       228.59       202.62        20.91 
TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZG 
       28.08         7.76        48.85        53.52        40.27         9.70 
TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ 
       32.71        47.38        23.93       101.26        74.73       133.55 
TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY 
       11.41       148.77        53.16        26.56        49.48        27.06 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 
        0.20        76.41       120.46       117.93        84.72        64.41 
TCGA-GN-A26A TCGA-GN-A26D 
       32.48        39.58 

  TLL1 MUTATED TLL1 WILD-TYPE 
          6.38           0.20 
  TLL1 MUTATED TLL1 WILD-TYPE 
        357.37         345.96 
  TLL1 MUTATED TLL1 WILD-TYPE 
        35.905         48.805 
[1] "6.4 - 357.4 (35.9)" "0.2 - 346.0 (48.8)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED"   "TLL1 MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
  "TLL1 MUTATED"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
  "TLL1 MUTATED"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"TLL1 WILD-TYPE"   "TLL1 MUTATED"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
  "TLL1 MUTATED"   "TLL1 MUTATED" "TLL1 WILD-TYPE"   "TLL1 MUTATED" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
  "TLL1 MUTATED" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE"   "TLL1 MUTATED" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED"   "TLL1 MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
  "TLL1 MUTATED"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
  "TLL1 MUTATED"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"TLL1 WILD-TYPE"   "TLL1 MUTATED"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
  "TLL1 MUTATED"   "TLL1 MUTATED" "TLL1 WILD-TYPE"   "TLL1 MUTATED" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
  "TLL1 MUTATED" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE"   "TLL1 MUTATED" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED"   "TLL1 MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
  "TLL1 MUTATED"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
  "TLL1 MUTATED"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"TLL1 WILD-TYPE"   "TLL1 MUTATED"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
  "TLL1 MUTATED"   "TLL1 MUTATED" "TLL1 WILD-TYPE"   "TLL1 MUTATED" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
  "TLL1 MUTATED" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE"   "TLL1 MUTATED" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
[1] "hr=" "1"  
D85V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  TLL1 MUTATED                    6             0
  TLL1 WILD-TYPE                 16             1
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  TLL1 MUTATED                                                                                          3
  TLL1 WILD-TYPE                                                                                       29
                vv
clus             REGIONAL LYMPH NODE
  TLL1 MUTATED                    22
  TLL1 WILD-TYPE                  82
D85V3, multiclass
                                                                                          clus
vv                                                                                         TLL1 MUTATED
  DISTANT METASTASIS                                                                                  6
  PRIMARY TUMOR                                                                                       0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            3
  REGIONAL LYMPH NODE                                                                                22
                                                                                          clus
vv                                                                                         TLL1 WILD-TYPE
  DISTANT METASTASIS                                                                                   16
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             29
  REGIONAL LYMPH NODE                                                                                  82
D85V4, binary
                cls
clus              0  1
  TLL1 MUTATED   10 21
  TLL1 WILD-TYPE 50 78
[1] "tbl2"
                cls
clus             [,1] [,2]
  TLL1 MUTATED     10   21
  TLL1 WILD-TYPE   50   78
        clus
vv       TLL1 MUTATED TLL1 WILD-TYPE
  FEMALE           10             50
  MALE             21             78
                vv
clus              M0  M1 M1A M1B M1C
  TLL1 MUTATED    29   0   0   0   1
  TLL1 WILD-TYPE 109   2   1   2   1
D85V5, multiclass
                vv
clus             N0 N1 N1A N1B N2A N2B N2C N3 NX
  TLL1 MUTATED   21  0   1   5   0   1   1  0  1
  TLL1 WILD-TYPE 66  2   6  10   4   9   4 14  1
D85V6, multiclass
D85V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  TLL1 MUTATED             1       4        5        0        5         0
  TLL1 WILD-TYPE           2      13        5       12       13         7
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  TLL1 MUTATED           3         1         0          1          4          3
  TLL1 WILD-TYPE         6         6         7          5         13         18
                vv
clus             STAGE IV
  TLL1 MUTATED          1
  TLL1 WILD-TYPE        4
D85V8, multiclass

Clustering(86) Variable = C9ORF119 MUTATION ANALYSIS
D86V1, survival
                    sevent
clus2                 0  1
  C9ORF119 MUTATED    3  2
  C9ORF119 WILD-TYPE 70 83
  C9ORF119 MUTATED C9ORF119 WILD-TYPE 
                 5                153 
  C9ORF119 MUTATED C9ORF119 WILD-TYPE 
                 2                 83 
$`C9ORF119 MUTATED`
TCGA-EE-A29D TCGA-EE-A2A2 TCGA-EE-A2GH TCGA-EE-A2GN TCGA-FS-A1Z7 
       13.97        24.43       182.01        90.94         7.76 

$`C9ORF119 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW 
      148.31        49.74         2.70         6.38        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       61.18        53.92        65.92        23.44        68.09        28.60 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
       10.49       215.44        15.68        29.82         8.65        33.73 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H 
       14.70        26.86         4.93       109.64        78.87       168.26 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M 
       63.32        47.84        39.62        32.19         2.56        44.35 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T 
       18.58        56.42        37.35        14.47        55.89       345.96 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A5 TCGA-EE-A2A6 
       25.87        17.92        46.82        78.94        39.25        58.75 
TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GI TCGA-EE-A2GJ 
       47.54        43.23       314.53       135.91        22.55        89.33 
TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR 
       54.71        55.00        75.48       101.95        13.87        14.30 
TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 
       55.59        19.56        67.13        21.67       129.24        28.80 
TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH 
       19.76        61.51        47.28       103.27       103.17        16.96 
TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN 
      204.62        96.23       144.76       203.01       167.87        47.54 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU 
      248.61        43.23       103.56       136.44        41.59        53.26 
TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF 
        4.24       122.73        25.84         3.68        26.73        13.81 
TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
       23.47       138.77        12.59        26.37         6.41       131.08 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY 
       44.05        79.99        80.32       216.92        48.59       228.59 
TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC 
      202.62        20.91        28.08        27.68        48.85       357.37 
TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ 
       53.52        40.27        15.45         9.70        32.71        47.38 
TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS 
       23.93       101.26        74.73       133.55        11.41       148.77 
TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 
       53.16        26.56        49.48        27.06        27.02         0.20 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 
       76.41       120.46       117.93        84.72        10.09        64.41 
TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       62.76        32.48        39.58 

  C9ORF119 MUTATED C9ORF119 WILD-TYPE 
              7.76               0.20 
  C9ORF119 MUTATED C9ORF119 WILD-TYPE 
            182.01             357.37 
  C9ORF119 MUTATED C9ORF119 WILD-TYPE 
             24.43              47.54 
[1] "7.8 - 182.0 (24.4)" "0.2 - 357.4 (47.5)"
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JF         TCGA-D3-A2JK 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-D3-A3C6         TCGA-D3-A3CC         TCGA-D3-A3CE 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-D3-A3CF         TCGA-D3-A3MO         TCGA-D3-A3MV 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-D9-A148         TCGA-D9-A149         TCGA-D9-A1JW 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-D9-A1JX         TCGA-DA-A1HV         TCGA-DA-A1HW 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-DA-A1HY         TCGA-DA-A1I0         TCGA-DA-A1I1 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-DA-A1I2         TCGA-DA-A1I4         TCGA-DA-A1I5 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-DA-A1I7         TCGA-DA-A1I8         TCGA-DA-A1IA 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-DA-A1IB         TCGA-DA-A1IC         TCGA-DA-A3F2 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-DA-A3F3         TCGA-DA-A3F5         TCGA-DA-A3F8 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A17X         TCGA-EE-A17Z         TCGA-EE-A181 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A182         TCGA-EE-A183         TCGA-EE-A185 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A20B         TCGA-EE-A20F         TCGA-EE-A20H 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A29A         TCGA-EE-A29C         TCGA-EE-A29D 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE"   "C9ORF119 MUTATED" 
        TCGA-EE-A29E         TCGA-EE-A29H         TCGA-EE-A29L 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A29M         TCGA-EE-A29N         TCGA-EE-A29P 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A29Q         TCGA-EE-A29R         TCGA-EE-A29S 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A29T         TCGA-EE-A29V         TCGA-EE-A29X 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2A0         TCGA-EE-A2A1         TCGA-EE-A2A2 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE"   "C9ORF119 MUTATED" 
        TCGA-EE-A2A5         TCGA-EE-A2A6         TCGA-EE-A2GB 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2GC         TCGA-EE-A2GD         TCGA-EE-A2GE 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2GH         TCGA-EE-A2GI         TCGA-EE-A2GJ 
  "C9ORF119 MUTATED" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2GK         TCGA-EE-A2GL         TCGA-EE-A2GM 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2GN         TCGA-EE-A2GO         TCGA-EE-A2GP 
  "C9ORF119 MUTATED" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2GR         TCGA-EE-A2GS         TCGA-EE-A2GT 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2GU         TCGA-EE-A2M5         TCGA-EE-A2M6 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2M7         TCGA-EE-A2M8         TCGA-EE-A2MC 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2MD         TCGA-EE-A2ME         TCGA-EE-A2MG 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2MH         TCGA-EE-A2MI         TCGA-EE-A2MJ 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2MK         TCGA-EE-A2ML         TCGA-EE-A2MM 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2MN         TCGA-EE-A2MP         TCGA-EE-A2MQ 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2MR         TCGA-EE-A2MS         TCGA-EE-A2MT 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2MU         TCGA-EE-A3AA         TCGA-EE-A3AB 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A3AC         TCGA-EE-A3AD         TCGA-EE-A3AE 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A3AF         TCGA-EE-A3AG         TCGA-EE-A3AH 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-ER-A19D         TCGA-ER-A19F         TCGA-ER-A19J 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-ER-A19L         TCGA-ER-A19N         TCGA-ER-A1A1 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-ER-A3ET         TCGA-FS-A1YW         TCGA-FS-A1YX 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-FS-A1YY         TCGA-FS-A1Z0         TCGA-FS-A1Z3 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-FS-A1Z4         TCGA-FS-A1Z7         TCGA-FS-A1ZA 
"C9ORF119 WILD-TYPE"   "C9ORF119 MUTATED" "C9ORF119 WILD-TYPE" 
        TCGA-FS-A1ZB         TCGA-FS-A1ZC         TCGA-FS-A1ZD 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZQ 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-FS-A1ZR         TCGA-FS-A1ZS         TCGA-FS-A1ZT 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-FS-A1ZU         TCGA-FS-A1ZW         TCGA-FS-A1ZY 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-FS-A1ZZ         TCGA-FW-A3I3         TCGA-GN-A261 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-GN-A262         TCGA-GN-A264         TCGA-GN-A265 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-GN-A266         TCGA-GN-A267         TCGA-GN-A268 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-GN-A26A         TCGA-GN-A26D 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JF         TCGA-D3-A2JK 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-D3-A3C6         TCGA-D3-A3CC         TCGA-D3-A3CE 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-D3-A3CF         TCGA-D3-A3MO         TCGA-D3-A3MV 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-D9-A148         TCGA-D9-A149         TCGA-D9-A1JW 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-D9-A1JX         TCGA-DA-A1HV         TCGA-DA-A1HW 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-DA-A1HY         TCGA-DA-A1I0         TCGA-DA-A1I1 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-DA-A1I2         TCGA-DA-A1I4         TCGA-DA-A1I5 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-DA-A1I7         TCGA-DA-A1I8         TCGA-DA-A1IA 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-DA-A1IB         TCGA-DA-A1IC         TCGA-DA-A3F2 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-DA-A3F3         TCGA-DA-A3F5         TCGA-DA-A3F8 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A17X         TCGA-EE-A17Z         TCGA-EE-A181 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A182         TCGA-EE-A183         TCGA-EE-A185 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A20B         TCGA-EE-A20F         TCGA-EE-A20H 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A29A         TCGA-EE-A29C         TCGA-EE-A29D 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE"   "C9ORF119 MUTATED" 
        TCGA-EE-A29E         TCGA-EE-A29H         TCGA-EE-A29L 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A29M         TCGA-EE-A29N         TCGA-EE-A29P 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A29Q         TCGA-EE-A29R         TCGA-EE-A29S 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A29T         TCGA-EE-A29V         TCGA-EE-A29X 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2A0         TCGA-EE-A2A1         TCGA-EE-A2A2 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE"   "C9ORF119 MUTATED" 
        TCGA-EE-A2A5         TCGA-EE-A2A6         TCGA-EE-A2GB 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2GC         TCGA-EE-A2GD         TCGA-EE-A2GE 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2GH         TCGA-EE-A2GI         TCGA-EE-A2GJ 
  "C9ORF119 MUTATED" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2GK         TCGA-EE-A2GL         TCGA-EE-A2GM 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2GN         TCGA-EE-A2GO         TCGA-EE-A2GP 
  "C9ORF119 MUTATED" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2GR         TCGA-EE-A2GS         TCGA-EE-A2GT 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2GU         TCGA-EE-A2M5         TCGA-EE-A2M6 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2M7         TCGA-EE-A2M8         TCGA-EE-A2MC 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2MD         TCGA-EE-A2ME         TCGA-EE-A2MG 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2MH         TCGA-EE-A2MI         TCGA-EE-A2MJ 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2MK         TCGA-EE-A2ML         TCGA-EE-A2MM 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2MN         TCGA-EE-A2MP         TCGA-EE-A2MQ 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2MR         TCGA-EE-A2MS         TCGA-EE-A2MT 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2MU         TCGA-EE-A3AA         TCGA-EE-A3AB 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A3AC         TCGA-EE-A3AD         TCGA-EE-A3AE 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A3AF         TCGA-EE-A3AG         TCGA-EE-A3AH 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-ER-A19D         TCGA-ER-A19F         TCGA-ER-A19J 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-ER-A19L         TCGA-ER-A19N         TCGA-ER-A1A1 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-ER-A3ET         TCGA-FS-A1YW         TCGA-FS-A1YX 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-FS-A1YY         TCGA-FS-A1Z0         TCGA-FS-A1Z3 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-FS-A1Z4         TCGA-FS-A1Z7         TCGA-FS-A1ZA 
"C9ORF119 WILD-TYPE"   "C9ORF119 MUTATED" "C9ORF119 WILD-TYPE" 
        TCGA-FS-A1ZB         TCGA-FS-A1ZC         TCGA-FS-A1ZD 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZQ 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-FS-A1ZR         TCGA-FS-A1ZS         TCGA-FS-A1ZT 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-FS-A1ZU         TCGA-FS-A1ZW         TCGA-FS-A1ZY 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-FS-A1ZZ         TCGA-FW-A3I3         TCGA-GN-A261 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-GN-A262         TCGA-GN-A264         TCGA-GN-A265 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-GN-A266         TCGA-GN-A267         TCGA-GN-A268 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-GN-A26A         TCGA-GN-A26D 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JF         TCGA-D3-A2JK 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-D3-A3C6         TCGA-D3-A3CC         TCGA-D3-A3CE 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-D3-A3CF         TCGA-D3-A3MO         TCGA-D3-A3MV 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-D9-A148         TCGA-D9-A149         TCGA-D9-A1JW 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-D9-A1JX         TCGA-DA-A1HV         TCGA-DA-A1HW 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-DA-A1HY         TCGA-DA-A1I0         TCGA-DA-A1I1 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-DA-A1I2         TCGA-DA-A1I4         TCGA-DA-A1I5 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-DA-A1I7         TCGA-DA-A1I8         TCGA-DA-A1IA 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-DA-A1IB         TCGA-DA-A1IC         TCGA-DA-A3F2 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-DA-A3F3         TCGA-DA-A3F5         TCGA-DA-A3F8 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A17X         TCGA-EE-A17Z         TCGA-EE-A181 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A182         TCGA-EE-A183         TCGA-EE-A185 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A20B         TCGA-EE-A20F         TCGA-EE-A20H 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A29A         TCGA-EE-A29C         TCGA-EE-A29D 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE"   "C9ORF119 MUTATED" 
        TCGA-EE-A29E         TCGA-EE-A29H         TCGA-EE-A29L 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A29M         TCGA-EE-A29N         TCGA-EE-A29P 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A29Q         TCGA-EE-A29R         TCGA-EE-A29S 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A29T         TCGA-EE-A29V         TCGA-EE-A29X 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2A0         TCGA-EE-A2A1         TCGA-EE-A2A2 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE"   "C9ORF119 MUTATED" 
        TCGA-EE-A2A5         TCGA-EE-A2A6         TCGA-EE-A2GB 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2GC         TCGA-EE-A2GD         TCGA-EE-A2GE 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2GH         TCGA-EE-A2GI         TCGA-EE-A2GJ 
  "C9ORF119 MUTATED" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2GK         TCGA-EE-A2GL         TCGA-EE-A2GM 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2GN         TCGA-EE-A2GO         TCGA-EE-A2GP 
  "C9ORF119 MUTATED" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2GR         TCGA-EE-A2GS         TCGA-EE-A2GT 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2GU         TCGA-EE-A2M5         TCGA-EE-A2M6 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2M7         TCGA-EE-A2M8         TCGA-EE-A2MC 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2MD         TCGA-EE-A2ME         TCGA-EE-A2MG 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2MH         TCGA-EE-A2MI         TCGA-EE-A2MJ 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2MK         TCGA-EE-A2ML         TCGA-EE-A2MM 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2MN         TCGA-EE-A2MP         TCGA-EE-A2MQ 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2MR         TCGA-EE-A2MS         TCGA-EE-A2MT 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A2MU         TCGA-EE-A3AA         TCGA-EE-A3AB 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A3AC         TCGA-EE-A3AD         TCGA-EE-A3AE 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-EE-A3AF         TCGA-EE-A3AG         TCGA-EE-A3AH 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-ER-A19D         TCGA-ER-A19F         TCGA-ER-A19J 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-ER-A19L         TCGA-ER-A19N         TCGA-ER-A1A1 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-ER-A3ET         TCGA-FS-A1YW         TCGA-FS-A1YX 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-FS-A1YY         TCGA-FS-A1Z0         TCGA-FS-A1Z3 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-FS-A1Z4         TCGA-FS-A1Z7         TCGA-FS-A1ZA 
"C9ORF119 WILD-TYPE"   "C9ORF119 MUTATED" "C9ORF119 WILD-TYPE" 
        TCGA-FS-A1ZB         TCGA-FS-A1ZC         TCGA-FS-A1ZD 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZQ 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-FS-A1ZR         TCGA-FS-A1ZS         TCGA-FS-A1ZT 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-FS-A1ZU         TCGA-FS-A1ZW         TCGA-FS-A1ZY 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-FS-A1ZZ         TCGA-FW-A3I3         TCGA-GN-A261 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-GN-A262         TCGA-GN-A264         TCGA-GN-A265 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-GN-A266         TCGA-GN-A267         TCGA-GN-A268 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
        TCGA-GN-A26A         TCGA-GN-A26D 
"C9ORF119 WILD-TYPE" "C9ORF119 WILD-TYPE" 
[1] "hr=" "1.2"
D86V2, continuous
                    vv
clus                 DISTANT METASTASIS PRIMARY TUMOR
  C9ORF119 MUTATED                    0             0
  C9ORF119 WILD-TYPE                 22             1
                    vv
clus                 REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  C9ORF119 MUTATED                                                                                          1
  C9ORF119 WILD-TYPE                                                                                       31
                    vv
clus                 REGIONAL LYMPH NODE
  C9ORF119 MUTATED                     4
  C9ORF119 WILD-TYPE                 100
D86V3, multiclass
                                                                                          clus
vv                                                                                         C9ORF119 MUTATED
  DISTANT METASTASIS                                                                                      0
  PRIMARY TUMOR                                                                                           0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                1
  REGIONAL LYMPH NODE                                                                                     4
                                                                                          clus
vv                                                                                         C9ORF119 WILD-TYPE
  DISTANT METASTASIS                                                                                       22
  PRIMARY TUMOR                                                                                             1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                 31
  REGIONAL LYMPH NODE                                                                                     100
D86V4, binary
                    cls
clus                  0  1
  C9ORF119 MUTATED    0  5
  C9ORF119 WILD-TYPE 60 94
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C9ORF119 MUTATED      0    5
  C9ORF119 WILD-TYPE   60   94
        clus
vv       C9ORF119 MUTATED C9ORF119 WILD-TYPE
  FEMALE                0                 60
  MALE                  5                 94
                    vv
clus                  M0  M1 M1A M1B M1C
  C9ORF119 MUTATED     5   0   0   0   0
  C9ORF119 WILD-TYPE 133   2   1   2   2
D86V5, multiclass
                    vv
clus                 N0 N1 N1A N1B N2A N2B N2C N3 NX
  C9ORF119 MUTATED    2  0   0   3   0   0   0  0  0
  C9ORF119 WILD-TYPE 85  2   7  12   4  10   5 14  2
D86V6, multiclass
D86V7, continuous
                    vv
clus                 I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  C9ORF119 MUTATED             0       1        0        0        0         1
  C9ORF119 WILD-TYPE           3      16       10       12       18         6
                    vv
clus                 STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  C9ORF119 MUTATED           0         0         0          0          1
  C9ORF119 WILD-TYPE         9         7         7          6         16
                    vv
clus                 STAGE IIIC STAGE IV
  C9ORF119 MUTATED            2        0
  C9ORF119 WILD-TYPE         19        5
D86V8, multiclass

Clustering(87) Variable = CCDC54 MUTATION ANALYSIS
D87V1, survival
                  sevent
clus2               0  1
  CCDC54 MUTATED    7  3
  CCDC54 WILD-TYPE 66 82
  CCDC54 MUTATED CCDC54 WILD-TYPE 
              10              148 
  CCDC54 MUTATED CCDC54 WILD-TYPE 
               3               82 
$`CCDC54 MUTATED`
TCGA-DA-A3F5 TCGA-EE-A29N TCGA-EE-A29R TCGA-EE-A2GC TCGA-EE-A2ML TCGA-EE-A2MR 
      215.44        18.58        14.47        43.23       203.01       103.56 
TCGA-EE-A3AA TCGA-EE-A3AE TCGA-ER-A19F TCGA-GN-A266 
        4.24        26.73        26.37        10.09 

$`CCDC54 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW 
      148.31        49.74         2.70         6.38        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       61.18        53.92        65.92        23.44        68.09        28.60 
TCGA-DA-A3F3 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 
       10.49        15.68        29.82         8.65        33.73        14.70 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A 
       26.86         4.93       109.64        78.87       168.26        63.32 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M 
       47.84        13.97        39.62        32.19         2.56        44.35 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X 
       56.42        37.35        55.89       345.96        25.87        17.92 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB 
       46.82        78.94        24.43        39.25        58.75        47.54 
TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK 
      314.53       135.91       182.01        22.55        89.33        54.71 
TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR 
       55.00        75.48        90.94       101.95        13.87        14.30 
TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 
       55.59        19.56        67.13        21.67       129.24        28.80 
TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH 
       19.76        61.51        47.28       103.27       103.17        16.96 
TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP 
      204.62        96.23       144.76       167.87        47.54       248.61 
TCGA-EE-A2MQ TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AB TCGA-EE-A3AC 
       43.23       136.44        41.59        53.26       122.73        25.84 
TCGA-EE-A3AD TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19J 
        3.68        13.81        23.47       138.77        12.59         6.41 
TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX 
      131.08        44.05        79.99        80.32       216.92        48.59 
TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA 
      228.59       202.62        20.91        28.08         7.76        27.68 
TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG 
       48.85       357.37        53.52        40.27        15.45         9.70 
TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ 
       32.71        47.38        23.93       101.26        74.73       133.55 
TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY 
       11.41       148.77        53.16        26.56        49.48        27.06 
TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
       27.02         0.20        76.41       120.46       117.93        84.72 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       64.41        62.76        32.48        39.58 

  CCDC54 MUTATED CCDC54 WILD-TYPE 
            4.24             0.20 
  CCDC54 MUTATED CCDC54 WILD-TYPE 
          215.44           357.37 
  CCDC54 MUTATED CCDC54 WILD-TYPE 
          26.550           48.215 
[1] "4.2 - 215.4 (26.6)" "0.2 - 357.4 (48.2)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"CCDC54 WILD-TYPE"   "CCDC54 MUTATED" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE"   "CCDC54 MUTATED" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE"   "CCDC54 MUTATED" "CCDC54 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"CCDC54 WILD-TYPE"   "CCDC54 MUTATED" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"CCDC54 WILD-TYPE"   "CCDC54 MUTATED" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE"   "CCDC54 MUTATED" "CCDC54 WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE"   "CCDC54 MUTATED" "CCDC54 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE"   "CCDC54 MUTATED" "CCDC54 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE"   "CCDC54 MUTATED" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"CCDC54 WILD-TYPE"   "CCDC54 MUTATED" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"CCDC54 WILD-TYPE"   "CCDC54 MUTATED" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE"   "CCDC54 MUTATED" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE"   "CCDC54 MUTATED" "CCDC54 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"CCDC54 WILD-TYPE"   "CCDC54 MUTATED" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"CCDC54 WILD-TYPE"   "CCDC54 MUTATED" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE"   "CCDC54 MUTATED" "CCDC54 WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE"   "CCDC54 MUTATED" "CCDC54 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE"   "CCDC54 MUTATED" "CCDC54 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE"   "CCDC54 MUTATED" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"CCDC54 WILD-TYPE"   "CCDC54 MUTATED" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"CCDC54 WILD-TYPE"   "CCDC54 MUTATED" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE"   "CCDC54 MUTATED" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE"   "CCDC54 MUTATED" "CCDC54 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"CCDC54 WILD-TYPE"   "CCDC54 MUTATED" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"CCDC54 WILD-TYPE"   "CCDC54 MUTATED" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE"   "CCDC54 MUTATED" "CCDC54 WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE"   "CCDC54 MUTATED" "CCDC54 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE"   "CCDC54 MUTATED" "CCDC54 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE"   "CCDC54 MUTATED" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"CCDC54 WILD-TYPE"   "CCDC54 MUTATED" "CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"CCDC54 WILD-TYPE" "CCDC54 WILD-TYPE" 
[1] "hr=" "1.7"
D87V2, continuous
                  vv
clus               DISTANT METASTASIS PRIMARY TUMOR
  CCDC54 MUTATED                    0             0
  CCDC54 WILD-TYPE                 22             1
                  vv
clus               REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  CCDC54 MUTATED                                                                                          1
  CCDC54 WILD-TYPE                                                                                       31
                  vv
clus               REGIONAL LYMPH NODE
  CCDC54 MUTATED                     9
  CCDC54 WILD-TYPE                  95
D87V3, multiclass
                                                                                          clus
vv                                                                                         CCDC54 MUTATED
  DISTANT METASTASIS                                                                                    0
  PRIMARY TUMOR                                                                                         0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              1
  REGIONAL LYMPH NODE                                                                                   9
                                                                                          clus
vv                                                                                         CCDC54 WILD-TYPE
  DISTANT METASTASIS                                                                                     22
  PRIMARY TUMOR                                                                                           1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               31
  REGIONAL LYMPH NODE                                                                                    95
D87V4, binary
                  cls
clus                0  1
  CCDC54 MUTATED    2  8
  CCDC54 WILD-TYPE 58 91
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CCDC54 MUTATED      2    8
  CCDC54 WILD-TYPE   58   91
        clus
vv       CCDC54 MUTATED CCDC54 WILD-TYPE
  FEMALE              2               58
  MALE                8               91
                  vv
clus                M0  M1 M1A M1B M1C
  CCDC54 MUTATED     8   0   0   0   0
  CCDC54 WILD-TYPE 130   2   1   2   2
D87V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2A N2B N2C N3 NX
  CCDC54 MUTATED    6  0   0   1   0   0   0  1  0
  CCDC54 WILD-TYPE 81  2   7  14   4  10   5 13  2
D87V6, multiclass
D87V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  CCDC54 MUTATED             0       1        1        0        1         0
  CCDC54 WILD-TYPE           3      16        9       12       17         7
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  CCDC54 MUTATED           1         0         0          0          0
  CCDC54 WILD-TYPE         8         7         7          6         17
                  vv
clus               STAGE IIIC STAGE IV
  CCDC54 MUTATED            2        0
  CCDC54 WILD-TYPE         19        5
D87V8, multiclass

Clustering(88) Variable = DEFB118 MUTATION ANALYSIS
D88V1, survival
                   sevent
clus2                0  1
  DEFB118 MUTATED    4  2
  DEFB118 WILD-TYPE 69 83
  DEFB118 MUTATED DEFB118 WILD-TYPE 
                6               152 
  DEFB118 MUTATED DEFB118 WILD-TYPE 
                2                83 
$`DEFB118 MUTATED`
TCGA-DA-A1I1 TCGA-EE-A29R TCGA-EE-A2A6 TCGA-EE-A2MI TCGA-EE-A2MP TCGA-ER-A19F 
      194.83        14.47        58.75       204.62       248.61        26.37 

$`DEFB118 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW 
      148.31        49.74         2.70         6.38        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
      117.17        20.38       176.55        35.93       107.34        61.18 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       53.92        65.92        23.44        68.09        28.60        10.49 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 
      215.44        15.68        29.82         8.65        33.73        14.70 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A 
       26.86         4.93       109.64        78.87       168.26        63.32 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M 
       47.84        13.97        39.62        32.19         2.56        44.35 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V 
       18.58        56.42        37.35        55.89       345.96        25.87 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2GB 
       17.92        46.82        78.94        24.43        39.25        47.54 
TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ 
       43.23       314.53       135.91       182.01        22.55        89.33 
TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP 
       54.71        55.00        75.48        90.94       101.95        13.87 
TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 
       14.30        55.59        19.56        67.13        21.67       129.24 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG 
       28.80        19.76        61.51        47.28       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN 
       16.96        96.23       144.76       203.01       167.87        47.54 
TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA 
       43.23       103.56       136.44        41.59        53.26         4.24 
TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG 
      122.73        25.84         3.68        26.73        13.81        23.47 
TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 
      138.77        12.59         6.41       131.08        44.05        79.99 
TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 
       80.32       216.92        48.59       228.59       202.62        20.91 
TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD 
       28.08         7.76        27.68        48.85       357.37        53.52 
TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK 
       40.27        15.45         9.70        32.71        47.38        23.93 
TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT 
      101.26        74.73       133.55        11.41       148.77        53.16 
TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 
       26.56        49.48        27.06        27.02         0.20        76.41 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 
      120.46       117.93        84.72        10.09        64.41        62.76 
TCGA-GN-A26A TCGA-GN-A26D 
       32.48        39.58 

  DEFB118 MUTATED DEFB118 WILD-TYPE 
            14.47              0.20 
  DEFB118 MUTATED DEFB118 WILD-TYPE 
           248.61            357.37 
  DEFB118 MUTATED DEFB118 WILD-TYPE 
           126.79             47.46 
[1] "14.5 - 248.6 (126.8)" "0.2 - 357.4 (47.5)"  
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE"   "DEFB118 MUTATED" "DEFB118 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE"   "DEFB118 MUTATED" "DEFB118 WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE"   "DEFB118 MUTATED" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE"   "DEFB118 MUTATED" "DEFB118 WILD-TYPE" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
  "DEFB118 MUTATED" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE"   "DEFB118 MUTATED" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE"   "DEFB118 MUTATED" "DEFB118 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE"   "DEFB118 MUTATED" "DEFB118 WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE"   "DEFB118 MUTATED" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE"   "DEFB118 MUTATED" "DEFB118 WILD-TYPE" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
  "DEFB118 MUTATED" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE"   "DEFB118 MUTATED" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE"   "DEFB118 MUTATED" "DEFB118 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE"   "DEFB118 MUTATED" "DEFB118 WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE"   "DEFB118 MUTATED" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE"   "DEFB118 MUTATED" "DEFB118 WILD-TYPE" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
  "DEFB118 MUTATED" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE"   "DEFB118 MUTATED" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"DEFB118 WILD-TYPE" "DEFB118 WILD-TYPE" 
[1] "hr=" "2.9"
D88V2, continuous
                   vv
clus                DISTANT METASTASIS PRIMARY TUMOR
  DEFB118 MUTATED                    0             0
  DEFB118 WILD-TYPE                 22             1
                   vv
clus                REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  DEFB118 MUTATED                                                                                          1
  DEFB118 WILD-TYPE                                                                                       31
                   vv
clus                REGIONAL LYMPH NODE
  DEFB118 MUTATED                     5
  DEFB118 WILD-TYPE                  99
D88V3, multiclass
                                                                                          clus
vv                                                                                         DEFB118 MUTATED
  DISTANT METASTASIS                                                                                     0
  PRIMARY TUMOR                                                                                          0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               1
  REGIONAL LYMPH NODE                                                                                    5
                                                                                          clus
vv                                                                                         DEFB118 WILD-TYPE
  DISTANT METASTASIS                                                                                      22
  PRIMARY TUMOR                                                                                            1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                31
  REGIONAL LYMPH NODE                                                                                     99
D88V4, binary
                   cls
clus                 0  1
  DEFB118 MUTATED    2  4
  DEFB118 WILD-TYPE 58 95
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DEFB118 MUTATED      2    4
  DEFB118 WILD-TYPE   58   95
        clus
vv       DEFB118 MUTATED DEFB118 WILD-TYPE
  FEMALE               2                58
  MALE                 4                95
                   vv
clus                 M0  M1 M1A M1B M1C
  DEFB118 MUTATED     6   0   0   0   0
  DEFB118 WILD-TYPE 132   2   1   2   2
D88V5, multiclass
                   vv
clus                N0 N1 N1A N1B N2A N2B N2C N3 NX
  DEFB118 MUTATED    4  0   0   1   0   0   0  1  0
  DEFB118 WILD-TYPE 83  2   7  14   4  10   5 13  2
D88V6, multiclass
D88V7, continuous
                   vv
clus                I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DEFB118 MUTATED             0       1        1        0        0         0
  DEFB118 WILD-TYPE           3      16        9       12       18         7
                   vv
clus                STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  DEFB118 MUTATED           1         0         0          0          0
  DEFB118 WILD-TYPE         8         7         7          6         17
                   vv
clus                STAGE IIIC STAGE IV
  DEFB118 MUTATED            2        0
  DEFB118 WILD-TYPE         19        5
D88V8, multiclass

Clustering(89) Variable = HTR3B MUTATION ANALYSIS
D89V1, survival
                 sevent
clus2              0  1
  HTR3B MUTATED   10  1
  HTR3B WILD-TYPE 63 84
  HTR3B MUTATED HTR3B WILD-TYPE 
             11             147 
  HTR3B MUTATED HTR3B WILD-TYPE 
              1              84 
$`HTR3B MUTATED`
TCGA-D3-A1Q7 TCGA-D3-A2J8 TCGA-DA-A3F8 TCGA-EE-A29C TCGA-EE-A2GC TCGA-EE-A2GI 
      121.22        65.49        15.68        47.84        43.23        22.55 
TCGA-EE-A2GT TCGA-EE-A2M6 TCGA-EE-A2MR TCGA-EE-A3AA TCGA-ER-A3ET 
       19.56       129.24       103.56         4.24        80.32 

$`HTR3B WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.57       112.54        71.80        28.08        31.59        43.40 
TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC 
       23.77        11.87        48.76        12.10        58.03        71.24 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 TCGA-D9-A149 
       60.23        24.53         9.30        21.47       148.31        49.74 
TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        2.70         6.38        48.89        36.03       117.17        20.38 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
      194.83       176.55        35.93       107.34        61.18        53.92 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       65.92        23.44        68.09        28.60        10.49       215.44 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       29.82         8.65        33.73        14.70        26.86         4.93 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29D TCGA-EE-A29E 
      109.64        78.87       168.26        63.32        13.97        39.62 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       32.19         2.56        44.35        18.58        56.42        37.35 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
       14.47        55.89       345.96        25.87        17.92        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GD 
       78.94        24.43        39.25        58.75        47.54       314.53 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM 
      135.91       182.01        89.33        54.71        55.00        75.48 
TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GU 
       90.94       101.95        13.87        14.30        55.59        67.13 
TCGA-EE-A2M5 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME 
       21.67        28.80        19.76        61.51        47.28       103.27 
TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML 
      103.17        16.96       204.62        96.23       144.76       203.01 
TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MS TCGA-EE-A2MT 
      167.87        47.54       248.61        43.23       136.44        41.59 
TCGA-EE-A2MU TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF 
       53.26       122.73        25.84         3.68        26.73        13.81 
TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
       23.47       138.77        12.59        26.37         6.41       131.08 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 
       44.05        79.99       216.92        48.59       228.59       202.62 
TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC 
       20.91        28.08         7.76        27.68        48.85       357.37 
TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ 
       53.52        40.27        15.45         9.70        32.71        47.38 
TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS 
       23.93       101.26        74.73       133.55        11.41       148.77 
TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 
       53.16        26.56        49.48        27.06        27.02         0.20 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 
       76.41       120.46       117.93        84.72        10.09        64.41 
TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       62.76        32.48        39.58 

  HTR3B MUTATED HTR3B WILD-TYPE 
           4.24            0.20 
  HTR3B MUTATED HTR3B WILD-TYPE 
         129.24          357.37 
  HTR3B MUTATED HTR3B WILD-TYPE 
          47.84           47.54 
[1] "4.2 - 129.2 (47.8)" "0.2 - 357.4 (47.5)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE"   "HTR3B MUTATED" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE"   "HTR3B MUTATED" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE"   "HTR3B MUTATED" "HTR3B WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"HTR3B WILD-TYPE"   "HTR3B MUTATED" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"HTR3B WILD-TYPE"   "HTR3B MUTATED" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"HTR3B WILD-TYPE"   "HTR3B MUTATED" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE"   "HTR3B MUTATED" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE"   "HTR3B MUTATED" "HTR3B WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE"   "HTR3B MUTATED" "HTR3B WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE"   "HTR3B MUTATED" "HTR3B WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
  "HTR3B MUTATED" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE"   "HTR3B MUTATED" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE"   "HTR3B MUTATED" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE"   "HTR3B MUTATED" "HTR3B WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"HTR3B WILD-TYPE"   "HTR3B MUTATED" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"HTR3B WILD-TYPE"   "HTR3B MUTATED" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"HTR3B WILD-TYPE"   "HTR3B MUTATED" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE"   "HTR3B MUTATED" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE"   "HTR3B MUTATED" "HTR3B WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE"   "HTR3B MUTATED" "HTR3B WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE"   "HTR3B MUTATED" "HTR3B WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
  "HTR3B MUTATED" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE"   "HTR3B MUTATED" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE"   "HTR3B MUTATED" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE"   "HTR3B MUTATED" "HTR3B WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"HTR3B WILD-TYPE"   "HTR3B MUTATED" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"HTR3B WILD-TYPE"   "HTR3B MUTATED" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"HTR3B WILD-TYPE"   "HTR3B MUTATED" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE"   "HTR3B MUTATED" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE"   "HTR3B MUTATED" "HTR3B WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE"   "HTR3B MUTATED" "HTR3B WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE"   "HTR3B MUTATED" "HTR3B WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
  "HTR3B MUTATED" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
[1] "hr=" "5.6"
D89V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  HTR3B MUTATED                    0             0
  HTR3B WILD-TYPE                 22             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  HTR3B MUTATED                                                                                          1
  HTR3B WILD-TYPE                                                                                       31
                 vv
clus              REGIONAL LYMPH NODE
  HTR3B MUTATED                    10
  HTR3B WILD-TYPE                  94
D89V3, multiclass
                                                                                          clus
vv                                                                                         HTR3B MUTATED
  DISTANT METASTASIS                                                                                   0
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             1
  REGIONAL LYMPH NODE                                                                                 10
                                                                                          clus
vv                                                                                         HTR3B WILD-TYPE
  DISTANT METASTASIS                                                                                    22
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              31
  REGIONAL LYMPH NODE                                                                                   94
D89V4, binary
                 cls
clus               0  1
  HTR3B MUTATED    2  9
  HTR3B WILD-TYPE 58 90
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HTR3B MUTATED      2    9
  HTR3B WILD-TYPE   58   90
        clus
vv       HTR3B MUTATED HTR3B WILD-TYPE
  FEMALE             2              58
  MALE               9              90
                 vv
clus               M0  M1 M1A M1B M1C
  HTR3B MUTATED    10   0   0   0   0
  HTR3B WILD-TYPE 128   2   1   2   2
D89V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2A N2B N2C N3 NX
  HTR3B MUTATED    8  0   1   0   0   1   0  0  0
  HTR3B WILD-TYPE 79  2   6  15   4   9   5 14  2
D89V6, multiclass
D89V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  HTR3B MUTATED             0       2        1        3        0         1
  HTR3B WILD-TYPE           3      15        9        9       18         6
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  HTR3B MUTATED           1         0         0          1          1
  HTR3B WILD-TYPE         8         7         7          5         16
                 vv
clus              STAGE IIIC STAGE IV
  HTR3B MUTATED            0        0
  HTR3B WILD-TYPE         21        5
D89V8, multiclass

Clustering(90) Variable = MARCH11 MUTATION ANALYSIS
D90V1, survival
                   sevent
clus2                0  1
  MARCH11 MUTATED    4  3
  MARCH11 WILD-TYPE 69 82
  MARCH11 MUTATED MARCH11 WILD-TYPE 
                7               151 
  MARCH11 MUTATED MARCH11 WILD-TYPE 
                3                82 
$`MARCH11 MUTATED`
TCGA-DA-A1I5 TCGA-EE-A2GM TCGA-EE-A2M6 TCGA-EE-A2MJ TCGA-FS-A1YW TCGA-FS-A1ZK 
      107.34        75.48       129.24        96.23       216.92        23.93 
TCGA-FS-A1ZT 
       53.16 

$`MARCH11 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW 
      148.31        49.74         2.70         6.38        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 
      117.17        20.38       194.83       176.55        35.93        61.18 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       53.92        65.92        23.44        68.09        28.60        10.49 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 
      215.44        15.68        29.82         8.65        33.73        14.70 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A 
       26.86         4.93       109.64        78.87       168.26        63.32 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M 
       47.84        13.97        39.62        32.19         2.56        44.35 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T 
       18.58        56.42        37.35        14.47        55.89       345.96 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
       25.87        17.92        46.82        78.94        24.43        39.25 
TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH 
       58.75        47.54        43.23       314.53       135.91       182.01 
TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GN TCGA-EE-A2GO 
       22.55        89.33        54.71        55.00        90.94       101.95 
TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 
       13.87        14.30        55.59        19.56        67.13        21.67 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG 
       28.80        19.76        61.51        47.28       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN 
       16.96       204.62       144.76       203.01       167.87        47.54 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU 
      248.61        43.23       103.56       136.44        41.59        53.26 
TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF 
        4.24       122.73        25.84         3.68        26.73        13.81 
TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
       23.47       138.77        12.59        26.37         6.41       131.08 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 
       44.05        79.99        80.32        48.59       228.59       202.62 
TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC 
       20.91        28.08         7.76        27.68        48.85       357.37 
TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ 
       53.52        40.27        15.45         9.70        32.71        47.38 
TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZU 
      101.26        74.73       133.55        11.41       148.77        26.56 
TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 
       49.48        27.06        27.02         0.20        76.41       120.46 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
      117.93        84.72        10.09        64.41        62.76        32.48 
TCGA-GN-A26D 
       39.58 

  MARCH11 MUTATED MARCH11 WILD-TYPE 
            23.93              0.20 
  MARCH11 MUTATED MARCH11 WILD-TYPE 
           216.92            357.37 
  MARCH11 MUTATED MARCH11 WILD-TYPE 
            96.23             47.28 
[1] "23.9 - 216.9 (96.2)" "0.2 - 357.4 (47.3)" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"MARCH11 WILD-TYPE"   "MARCH11 MUTATED" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"MARCH11 WILD-TYPE"   "MARCH11 MUTATED" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE"   "MARCH11 MUTATED" "MARCH11 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE"   "MARCH11 MUTATED" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"MARCH11 WILD-TYPE"   "MARCH11 MUTATED" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"MARCH11 WILD-TYPE"   "MARCH11 MUTATED" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE"   "MARCH11 MUTATED" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"MARCH11 WILD-TYPE"   "MARCH11 MUTATED" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"MARCH11 WILD-TYPE"   "MARCH11 MUTATED" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE"   "MARCH11 MUTATED" "MARCH11 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE"   "MARCH11 MUTATED" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"MARCH11 WILD-TYPE"   "MARCH11 MUTATED" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"MARCH11 WILD-TYPE"   "MARCH11 MUTATED" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE"   "MARCH11 MUTATED" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"MARCH11 WILD-TYPE"   "MARCH11 MUTATED" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"MARCH11 WILD-TYPE"   "MARCH11 MUTATED" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE"   "MARCH11 MUTATED" "MARCH11 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE"   "MARCH11 MUTATED" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"MARCH11 WILD-TYPE"   "MARCH11 MUTATED" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"MARCH11 WILD-TYPE"   "MARCH11 MUTATED" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE"   "MARCH11 MUTATED" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
[1] "hr=" "1.9"
D90V2, continuous
                   vv
clus                DISTANT METASTASIS PRIMARY TUMOR
  MARCH11 MUTATED                    3             0
  MARCH11 WILD-TYPE                 19             1
                   vv
clus                REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  MARCH11 MUTATED                                                                                          1
  MARCH11 WILD-TYPE                                                                                       31
                   vv
clus                REGIONAL LYMPH NODE
  MARCH11 MUTATED                     3
  MARCH11 WILD-TYPE                 101
D90V3, multiclass
                                                                                          clus
vv                                                                                         MARCH11 MUTATED
  DISTANT METASTASIS                                                                                     3
  PRIMARY TUMOR                                                                                          0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               1
  REGIONAL LYMPH NODE                                                                                    3
                                                                                          clus
vv                                                                                         MARCH11 WILD-TYPE
  DISTANT METASTASIS                                                                                      19
  PRIMARY TUMOR                                                                                            1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                31
  REGIONAL LYMPH NODE                                                                                    101
D90V4, binary
                   cls
clus                 0  1
  MARCH11 MUTATED    2  5
  MARCH11 WILD-TYPE 58 94
[1] "tbl2"
                   cls
clus                [,1] [,2]
  MARCH11 MUTATED      2    5
  MARCH11 WILD-TYPE   58   94
        clus
vv       MARCH11 MUTATED MARCH11 WILD-TYPE
  FEMALE               2                58
  MALE                 5                94
                   vv
clus                 M0  M1 M1A M1B M1C
  MARCH11 MUTATED     6   0   0   0   1
  MARCH11 WILD-TYPE 132   2   1   2   1
D90V5, multiclass
                   vv
clus                N0 N1 N1A N1B N2A N2B N2C N3 NX
  MARCH11 MUTATED    6  0   0   1   0   0   0  0  0
  MARCH11 WILD-TYPE 81  2   7  14   4  10   5 14  2
D90V6, multiclass
D90V7, continuous
                   vv
clus                I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  MARCH11 MUTATED             0       1        0        1        2         0
  MARCH11 WILD-TYPE           3      16       10       11       16         7
                   vv
clus                STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  MARCH11 MUTATED           0         1         1          0          0
  MARCH11 WILD-TYPE         9         6         6          6         17
                   vv
clus                STAGE IIIC STAGE IV
  MARCH11 MUTATED            0        1
  MARCH11 WILD-TYPE         21        4
D90V8, multiclass

Clustering(91) Variable = MKX MUTATION ANALYSIS
D91V1, survival
               sevent
clus2            0  1
  MKX MUTATED    8  2
  MKX WILD-TYPE 65 83
  MKX MUTATED MKX WILD-TYPE 
           10           148 
  MKX MUTATED MKX WILD-TYPE 
            2            83 
$`MKX MUTATED`
TCGA-EE-A29E TCGA-EE-A29M TCGA-EE-A29Q TCGA-EE-A2GC TCGA-EE-A2GI TCGA-EE-A3AA 
       39.62        44.35        37.35        43.23        22.55         4.24 
TCGA-EE-A3AG TCGA-ER-A19F TCGA-GN-A265 TCGA-GN-A268 
       23.47        26.37        84.72        62.76 

$`MKX WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW 
      148.31        49.74         2.70         6.38        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       61.18        53.92        65.92        23.44        68.09        28.60 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
       10.49       215.44        15.68        29.82         8.65        33.73 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H 
       14.70        26.86         4.93       109.64        78.87       168.26 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N 
       63.32        47.84        13.97        32.19         2.56        18.58 
TCGA-EE-A29P TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X 
       56.42        14.47        55.89       345.96        25.87        17.92 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB 
       46.82        78.94        24.43        39.25        58.75        47.54 
TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL 
      314.53       135.91       182.01        89.33        54.71        55.00 
TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS 
       75.48        90.94       101.95        13.87        14.30        55.59 
TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 
       19.56        67.13        21.67       129.24        28.80        19.76 
TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI 
       61.51        47.28       103.27       103.17        16.96       204.62 
TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP 
       96.23       144.76       203.01       167.87        47.54       248.61 
TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AB 
       43.23       103.56       136.44        41.59        53.26       122.73 
TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AH TCGA-ER-A19D 
       25.84         3.68        26.73        13.81       138.77        12.59 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW 
        6.41       131.08        44.05        79.99        80.32       216.92 
TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 
       48.59       228.59       202.62        20.91        28.08         7.76 
TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF 
       27.68        48.85       357.37        53.52        40.27        15.45 
TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP 
        9.70        32.71        47.38        23.93       101.26        74.73 
TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW 
      133.55        11.41       148.77        53.16        26.56        49.48 
TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
       27.06        27.02         0.20        76.41       120.46       117.93 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A26A TCGA-GN-A26D 
       10.09        64.41        32.48        39.58 

  MKX MUTATED MKX WILD-TYPE 
         4.24          0.20 
  MKX MUTATED MKX WILD-TYPE 
        84.72        357.37 
  MKX MUTATED MKX WILD-TYPE 
       38.485        48.675 
[1] "4.2 - 84.7 (38.5)"  "0.2 - 357.4 (48.7)"
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A148    TCGA-D9-A149 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-D9-A1JW    TCGA-D9-A1JX    TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-DA-A1I0    TCGA-DA-A1I1    TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-DA-A1I7    TCGA-DA-A1I8    TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-DA-A3F2    TCGA-DA-A3F3    TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A17Z    TCGA-EE-A181    TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A20B    TCGA-EE-A20F    TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A29D    TCGA-EE-A29E    TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M 
"MKX WILD-TYPE"   "MKX MUTATED" "MKX WILD-TYPE" "MKX WILD-TYPE"   "MKX MUTATED" 
   TCGA-EE-A29N    TCGA-EE-A29P    TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S 
"MKX WILD-TYPE" "MKX WILD-TYPE"   "MKX MUTATED" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A29T    TCGA-EE-A29V    TCGA-EE-A29X    TCGA-EE-A2A0    TCGA-EE-A2A1 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6    TCGA-EE-A2GB    TCGA-EE-A2GC 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE"   "MKX MUTATED" 
   TCGA-EE-A2GD    TCGA-EE-A2GE    TCGA-EE-A2GH    TCGA-EE-A2GI    TCGA-EE-A2GJ 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE"   "MKX MUTATED" "MKX WILD-TYPE" 
   TCGA-EE-A2GK    TCGA-EE-A2GL    TCGA-EE-A2GM    TCGA-EE-A2GN    TCGA-EE-A2GO 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A2GP    TCGA-EE-A2GR    TCGA-EE-A2GS    TCGA-EE-A2GT    TCGA-EE-A2GU 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A2M5    TCGA-EE-A2M6    TCGA-EE-A2M7    TCGA-EE-A2M8    TCGA-EE-A2MC 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A2MD    TCGA-EE-A2ME    TCGA-EE-A2MG    TCGA-EE-A2MH    TCGA-EE-A2MI 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A2MJ    TCGA-EE-A2MK    TCGA-EE-A2ML    TCGA-EE-A2MM    TCGA-EE-A2MN 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A2MP    TCGA-EE-A2MQ    TCGA-EE-A2MR    TCGA-EE-A2MS    TCGA-EE-A2MT 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A2MU    TCGA-EE-A3AA    TCGA-EE-A3AB    TCGA-EE-A3AC    TCGA-EE-A3AD 
"MKX WILD-TYPE"   "MKX MUTATED" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A3AE    TCGA-EE-A3AF    TCGA-EE-A3AG    TCGA-EE-A3AH    TCGA-ER-A19D 
"MKX WILD-TYPE" "MKX WILD-TYPE"   "MKX MUTATED" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19N    TCGA-ER-A1A1 
  "MKX MUTATED" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-ER-A3ET    TCGA-FS-A1YW    TCGA-FS-A1YX    TCGA-FS-A1YY    TCGA-FS-A1Z0 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-FS-A1Z3    TCGA-FS-A1Z4    TCGA-FS-A1Z7    TCGA-FS-A1ZA    TCGA-FS-A1ZB 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-FS-A1ZC    TCGA-FS-A1ZD    TCGA-FS-A1ZE    TCGA-FS-A1ZF    TCGA-FS-A1ZG 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-FS-A1ZH    TCGA-FS-A1ZJ    TCGA-FS-A1ZK    TCGA-FS-A1ZM    TCGA-FS-A1ZP 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-FS-A1ZQ    TCGA-FS-A1ZR    TCGA-FS-A1ZS    TCGA-FS-A1ZT    TCGA-FS-A1ZU 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-FS-A1ZW    TCGA-FS-A1ZY    TCGA-FS-A1ZZ    TCGA-FW-A3I3    TCGA-GN-A261 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265    TCGA-GN-A266    TCGA-GN-A267 
"MKX WILD-TYPE" "MKX WILD-TYPE"   "MKX MUTATED" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
  "MKX MUTATED" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A148    TCGA-D9-A149 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-D9-A1JW    TCGA-D9-A1JX    TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-DA-A1I0    TCGA-DA-A1I1    TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-DA-A1I7    TCGA-DA-A1I8    TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-DA-A3F2    TCGA-DA-A3F3    TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A17Z    TCGA-EE-A181    TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A20B    TCGA-EE-A20F    TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A29D    TCGA-EE-A29E    TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M 
"MKX WILD-TYPE"   "MKX MUTATED" "MKX WILD-TYPE" "MKX WILD-TYPE"   "MKX MUTATED" 
   TCGA-EE-A29N    TCGA-EE-A29P    TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S 
"MKX WILD-TYPE" "MKX WILD-TYPE"   "MKX MUTATED" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A29T    TCGA-EE-A29V    TCGA-EE-A29X    TCGA-EE-A2A0    TCGA-EE-A2A1 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6    TCGA-EE-A2GB    TCGA-EE-A2GC 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE"   "MKX MUTATED" 
   TCGA-EE-A2GD    TCGA-EE-A2GE    TCGA-EE-A2GH    TCGA-EE-A2GI    TCGA-EE-A2GJ 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE"   "MKX MUTATED" "MKX WILD-TYPE" 
   TCGA-EE-A2GK    TCGA-EE-A2GL    TCGA-EE-A2GM    TCGA-EE-A2GN    TCGA-EE-A2GO 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A2GP    TCGA-EE-A2GR    TCGA-EE-A2GS    TCGA-EE-A2GT    TCGA-EE-A2GU 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A2M5    TCGA-EE-A2M6    TCGA-EE-A2M7    TCGA-EE-A2M8    TCGA-EE-A2MC 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A2MD    TCGA-EE-A2ME    TCGA-EE-A2MG    TCGA-EE-A2MH    TCGA-EE-A2MI 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A2MJ    TCGA-EE-A2MK    TCGA-EE-A2ML    TCGA-EE-A2MM    TCGA-EE-A2MN 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A2MP    TCGA-EE-A2MQ    TCGA-EE-A2MR    TCGA-EE-A2MS    TCGA-EE-A2MT 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A2MU    TCGA-EE-A3AA    TCGA-EE-A3AB    TCGA-EE-A3AC    TCGA-EE-A3AD 
"MKX WILD-TYPE"   "MKX MUTATED" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A3AE    TCGA-EE-A3AF    TCGA-EE-A3AG    TCGA-EE-A3AH    TCGA-ER-A19D 
"MKX WILD-TYPE" "MKX WILD-TYPE"   "MKX MUTATED" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19N    TCGA-ER-A1A1 
  "MKX MUTATED" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-ER-A3ET    TCGA-FS-A1YW    TCGA-FS-A1YX    TCGA-FS-A1YY    TCGA-FS-A1Z0 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-FS-A1Z3    TCGA-FS-A1Z4    TCGA-FS-A1Z7    TCGA-FS-A1ZA    TCGA-FS-A1ZB 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-FS-A1ZC    TCGA-FS-A1ZD    TCGA-FS-A1ZE    TCGA-FS-A1ZF    TCGA-FS-A1ZG 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-FS-A1ZH    TCGA-FS-A1ZJ    TCGA-FS-A1ZK    TCGA-FS-A1ZM    TCGA-FS-A1ZP 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-FS-A1ZQ    TCGA-FS-A1ZR    TCGA-FS-A1ZS    TCGA-FS-A1ZT    TCGA-FS-A1ZU 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-FS-A1ZW    TCGA-FS-A1ZY    TCGA-FS-A1ZZ    TCGA-FW-A3I3    TCGA-GN-A261 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265    TCGA-GN-A266    TCGA-GN-A267 
"MKX WILD-TYPE" "MKX WILD-TYPE"   "MKX MUTATED" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
  "MKX MUTATED" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A148    TCGA-D9-A149 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-D9-A1JW    TCGA-D9-A1JX    TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-DA-A1I0    TCGA-DA-A1I1    TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-DA-A1I7    TCGA-DA-A1I8    TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-DA-A3F2    TCGA-DA-A3F3    TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A17Z    TCGA-EE-A181    TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A20B    TCGA-EE-A20F    TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A29D    TCGA-EE-A29E    TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M 
"MKX WILD-TYPE"   "MKX MUTATED" "MKX WILD-TYPE" "MKX WILD-TYPE"   "MKX MUTATED" 
   TCGA-EE-A29N    TCGA-EE-A29P    TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S 
"MKX WILD-TYPE" "MKX WILD-TYPE"   "MKX MUTATED" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A29T    TCGA-EE-A29V    TCGA-EE-A29X    TCGA-EE-A2A0    TCGA-EE-A2A1 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6    TCGA-EE-A2GB    TCGA-EE-A2GC 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE"   "MKX MUTATED" 
   TCGA-EE-A2GD    TCGA-EE-A2GE    TCGA-EE-A2GH    TCGA-EE-A2GI    TCGA-EE-A2GJ 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE"   "MKX MUTATED" "MKX WILD-TYPE" 
   TCGA-EE-A2GK    TCGA-EE-A2GL    TCGA-EE-A2GM    TCGA-EE-A2GN    TCGA-EE-A2GO 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A2GP    TCGA-EE-A2GR    TCGA-EE-A2GS    TCGA-EE-A2GT    TCGA-EE-A2GU 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A2M5    TCGA-EE-A2M6    TCGA-EE-A2M7    TCGA-EE-A2M8    TCGA-EE-A2MC 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A2MD    TCGA-EE-A2ME    TCGA-EE-A2MG    TCGA-EE-A2MH    TCGA-EE-A2MI 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A2MJ    TCGA-EE-A2MK    TCGA-EE-A2ML    TCGA-EE-A2MM    TCGA-EE-A2MN 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A2MP    TCGA-EE-A2MQ    TCGA-EE-A2MR    TCGA-EE-A2MS    TCGA-EE-A2MT 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A2MU    TCGA-EE-A3AA    TCGA-EE-A3AB    TCGA-EE-A3AC    TCGA-EE-A3AD 
"MKX WILD-TYPE"   "MKX MUTATED" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-EE-A3AE    TCGA-EE-A3AF    TCGA-EE-A3AG    TCGA-EE-A3AH    TCGA-ER-A19D 
"MKX WILD-TYPE" "MKX WILD-TYPE"   "MKX MUTATED" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19N    TCGA-ER-A1A1 
  "MKX MUTATED" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-ER-A3ET    TCGA-FS-A1YW    TCGA-FS-A1YX    TCGA-FS-A1YY    TCGA-FS-A1Z0 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-FS-A1Z3    TCGA-FS-A1Z4    TCGA-FS-A1Z7    TCGA-FS-A1ZA    TCGA-FS-A1ZB 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-FS-A1ZC    TCGA-FS-A1ZD    TCGA-FS-A1ZE    TCGA-FS-A1ZF    TCGA-FS-A1ZG 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-FS-A1ZH    TCGA-FS-A1ZJ    TCGA-FS-A1ZK    TCGA-FS-A1ZM    TCGA-FS-A1ZP 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-FS-A1ZQ    TCGA-FS-A1ZR    TCGA-FS-A1ZS    TCGA-FS-A1ZT    TCGA-FS-A1ZU 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-FS-A1ZW    TCGA-FS-A1ZY    TCGA-FS-A1ZZ    TCGA-FW-A3I3    TCGA-GN-A261 
"MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265    TCGA-GN-A266    TCGA-GN-A267 
"MKX WILD-TYPE" "MKX WILD-TYPE"   "MKX MUTATED" "MKX WILD-TYPE" "MKX WILD-TYPE" 
   TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
  "MKX MUTATED" "MKX WILD-TYPE" "MKX WILD-TYPE" 
[1] "hr=" "1.8"
D91V2, continuous
               vv
clus            DISTANT METASTASIS PRIMARY TUMOR
  MKX MUTATED                    0             1
  MKX WILD-TYPE                 22             0
               vv
clus            REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  MKX MUTATED                                                                                          2
  MKX WILD-TYPE                                                                                       30
               vv
clus            REGIONAL LYMPH NODE
  MKX MUTATED                     7
  MKX WILD-TYPE                  97
D91V3, multiclass
                                                                                          clus
vv                                                                                         MKX MUTATED
  DISTANT METASTASIS                                                                                 0
  PRIMARY TUMOR                                                                                      1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)           2
  REGIONAL LYMPH NODE                                                                                7
                                                                                          clus
vv                                                                                         MKX WILD-TYPE
  DISTANT METASTASIS                                                                                  22
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            30
  REGIONAL LYMPH NODE                                                                                 97
D91V4, binary
               cls
clus             0  1
  MKX MUTATED    3  7
  MKX WILD-TYPE 57 92
[1] "tbl2"
               cls
clus            [,1] [,2]
  MKX MUTATED      3    7
  MKX WILD-TYPE   57   92
        clus
vv       MKX MUTATED MKX WILD-TYPE
  FEMALE           3            57
  MALE             7            92
               vv
clus             M0  M1 M1A M1B M1C
  MKX MUTATED     7   0   0   0   0
  MKX WILD-TYPE 131   2   1   2   2
D91V5, multiclass
               vv
clus            N0 N1 N1A N1B N2A N2B N2C N3 NX
  MKX MUTATED    6  0   0   1   0   0   0  0  0
  MKX WILD-TYPE 81  2   7  14   4  10   5 14  2
D91V6, multiclass
D91V7, continuous
               vv
clus            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  MKX MUTATED             0       0        1        1        0         0
  MKX WILD-TYPE           3      17        9       11       18         7
               vv
clus            STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  MKX MUTATED           3         0         0          0          1          0
  MKX WILD-TYPE         6         7         7          6         16         21
               vv
clus            STAGE IV
  MKX MUTATED          0
  MKX WILD-TYPE        5
D91V8, multiclass

Clustering(92) Variable = OR5H2 MUTATION ANALYSIS
D92V1, survival
                 sevent
clus2              0  1
  OR5H2 MUTATED    7  4
  OR5H2 WILD-TYPE 66 81
  OR5H2 MUTATED OR5H2 WILD-TYPE 
             11             147 
  OR5H2 MUTATED OR5H2 WILD-TYPE 
              4              81 
$`OR5H2 MUTATED`
TCGA-DA-A1HV TCGA-DA-A1I7 TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A29E TCGA-EE-A29R 
       48.89        61.18        33.73        14.70        39.62        14.47 
TCGA-EE-A2GD TCGA-EE-A2MD TCGA-EE-A2MR TCGA-EE-A2MS TCGA-FS-A1ZK 
      314.53        47.28       103.56       136.44        23.93 

$`OR5H2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HW TCGA-DA-A1HY 
      148.31        49.74         2.70         6.38        36.03       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I8 
       20.38       194.83       176.55        35.93       107.34        53.92 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       65.92        23.44        68.09        28.60        10.49       215.44 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
       15.68        29.82         8.65        26.86         4.93       109.64 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29H 
       78.87       168.26        63.32        47.84        13.97        32.19 
TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29S 
        2.56        44.35        18.58        56.42        37.35        55.89 
TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
      345.96        25.87        17.92        46.82        78.94        24.43 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GE TCGA-EE-A2GH 
       39.25        58.75        47.54        43.23       135.91       182.01 
TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN 
       22.55        89.33        54.71        55.00        75.48        90.94 
TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU 
      101.95        13.87        14.30        55.59        19.56        67.13 
TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2ME 
       21.67       129.24        28.80        19.76        61.51       103.27 
TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML 
      103.17        16.96       204.62        96.23       144.76       203.01 
TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MT TCGA-EE-A2MU 
      167.87        47.54       248.61        43.23        41.59        53.26 
TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF 
        4.24       122.73        25.84         3.68        26.73        13.81 
TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
       23.47       138.77        12.59        26.37         6.41       131.08 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY 
       44.05        79.99        80.32       216.92        48.59       228.59 
TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB 
      202.62        20.91        28.08         7.76        27.68        48.85 
TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH 
      357.37        53.52        40.27        15.45         9.70        32.71 
TCGA-FS-A1ZJ TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS 
       47.38       101.26        74.73       133.55        11.41       148.77 
TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 
       53.16        26.56        49.48        27.06        27.02         0.20 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 
       76.41       120.46       117.93        84.72        10.09        64.41 
TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       62.76        32.48        39.58 

  OR5H2 MUTATED OR5H2 WILD-TYPE 
          14.47            0.20 
  OR5H2 MUTATED OR5H2 WILD-TYPE 
         314.53          357.37 
  OR5H2 MUTATED OR5H2 WILD-TYPE 
          47.28           47.54 
[1] "14.5 - 314.5 (47.3)" "0.2 - 357.4 (47.5)" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE"   "OR5H2 MUTATED" "OR5H2 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE"   "OR5H2 MUTATED" "OR5H2 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"OR5H2 WILD-TYPE"   "OR5H2 MUTATED"   "OR5H2 MUTATED" "OR5H2 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE"   "OR5H2 MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE"   "OR5H2 MUTATED" "OR5H2 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE"   "OR5H2 MUTATED" "OR5H2 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE"   "OR5H2 MUTATED" "OR5H2 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE"   "OR5H2 MUTATED"   "OR5H2 MUTATED" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"OR5H2 WILD-TYPE"   "OR5H2 MUTATED" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE"   "OR5H2 MUTATED" "OR5H2 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE"   "OR5H2 MUTATED" "OR5H2 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"OR5H2 WILD-TYPE"   "OR5H2 MUTATED"   "OR5H2 MUTATED" "OR5H2 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE"   "OR5H2 MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE"   "OR5H2 MUTATED" "OR5H2 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE"   "OR5H2 MUTATED" "OR5H2 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE"   "OR5H2 MUTATED" "OR5H2 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE"   "OR5H2 MUTATED"   "OR5H2 MUTATED" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"OR5H2 WILD-TYPE"   "OR5H2 MUTATED" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE"   "OR5H2 MUTATED" "OR5H2 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE"   "OR5H2 MUTATED" "OR5H2 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"OR5H2 WILD-TYPE"   "OR5H2 MUTATED"   "OR5H2 MUTATED" "OR5H2 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE"   "OR5H2 MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE"   "OR5H2 MUTATED" "OR5H2 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE"   "OR5H2 MUTATED" "OR5H2 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE"   "OR5H2 MUTATED" "OR5H2 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE"   "OR5H2 MUTATED"   "OR5H2 MUTATED" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"OR5H2 WILD-TYPE"   "OR5H2 MUTATED" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"OR5H2 WILD-TYPE" "OR5H2 WILD-TYPE" 
[1] "hr=" "1.6"
D92V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  OR5H2 MUTATED                    2             0
  OR5H2 WILD-TYPE                 20             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  OR5H2 MUTATED                                                                                          2
  OR5H2 WILD-TYPE                                                                                       30
                 vv
clus              REGIONAL LYMPH NODE
  OR5H2 MUTATED                     7
  OR5H2 WILD-TYPE                  97
D92V3, multiclass
                                                                                          clus
vv                                                                                         OR5H2 MUTATED
  DISTANT METASTASIS                                                                                   2
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             2
  REGIONAL LYMPH NODE                                                                                  7
                                                                                          clus
vv                                                                                         OR5H2 WILD-TYPE
  DISTANT METASTASIS                                                                                    20
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              30
  REGIONAL LYMPH NODE                                                                                   97
D92V4, binary
                 cls
clus               0  1
  OR5H2 MUTATED    5  6
  OR5H2 WILD-TYPE 55 93
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5H2 MUTATED      5    6
  OR5H2 WILD-TYPE   55   93
        clus
vv       OR5H2 MUTATED OR5H2 WILD-TYPE
  FEMALE             5              55
  MALE               6              93
                 vv
clus               M0  M1 M1A M1B M1C
  OR5H2 MUTATED    11   0   0   0   0
  OR5H2 WILD-TYPE 127   2   1   2   2
D92V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2A N2B N2C N3 NX
  OR5H2 MUTATED    6  0   0   3   0   2   0  0  0
  OR5H2 WILD-TYPE 81  2   7  12   4   8   5 14  2
D92V6, multiclass
D92V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  OR5H2 MUTATED             0       1        0        0        4         0
  OR5H2 WILD-TYPE           3      16       10       12       14         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  OR5H2 MUTATED           1         0         0          0          3
  OR5H2 WILD-TYPE         8         7         7          6         14
                 vv
clus              STAGE IIIC STAGE IV
  OR5H2 MUTATED            2        0
  OR5H2 WILD-TYPE         19        5
D92V8, multiclass

Clustering(93) Variable = SIGLEC14 MUTATION ANALYSIS
D93V1, survival
                    sevent
clus2                 0  1
  SIGLEC14 MUTATED    4  3
  SIGLEC14 WILD-TYPE 69 82
  SIGLEC14 MUTATED SIGLEC14 WILD-TYPE 
                 7                151 
  SIGLEC14 MUTATED SIGLEC14 WILD-TYPE 
                 3                 82 
$`SIGLEC14 MUTATED`
TCGA-D3-A2JF TCGA-DA-A1I1 TCGA-EE-A29V TCGA-EE-A2GC TCGA-EE-A2MR TCGA-FS-A1ZY 
       48.76       194.83        25.87        43.23       103.56        27.06 
TCGA-GN-A266 
       10.09 

$`SIGLEC14 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       43.40        65.49        23.77        11.87        12.10        58.03 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
       71.24        60.23        24.53         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
       49.74         2.70         6.38        48.89        36.03       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       20.38       176.55        35.93       107.34        61.18        53.92 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       65.92        23.44        68.09        28.60        10.49       215.44 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
       15.68        29.82         8.65        33.73        14.70        26.86 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.93       109.64        78.87       168.26        63.32        47.84 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N 
       13.97        39.62        32.19         2.56        44.35        18.58 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29X 
       56.42        37.35        14.47        55.89       345.96        17.92 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB 
       46.82        78.94        24.43        39.25        58.75        47.54 
TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK 
      314.53       135.91       182.01        22.55        89.33        54.71 
TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR 
       55.00        75.48        90.94       101.95        13.87        14.30 
TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 
       55.59        19.56        67.13        21.67       129.24        28.80 
TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH 
       19.76        61.51        47.28       103.27       103.17        16.96 
TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN 
      204.62        96.23       144.76       203.01       167.87        47.54 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA 
      248.61        43.23       136.44        41.59        53.26         4.24 
TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG 
      122.73        25.84         3.68        26.73        13.81        23.47 
TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N 
      138.77        12.59        26.37         6.41       131.08        44.05 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 
       79.99        80.32       216.92        48.59       228.59       202.62 
TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC 
       20.91        28.08         7.76        27.68        48.85       357.37 
TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ 
       53.52        40.27        15.45         9.70        32.71        47.38 
TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS 
       23.93       101.26        74.73       133.55        11.41       148.77 
TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 
       53.16        26.56        49.48        27.02         0.20        76.41 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
      120.46       117.93        84.72        64.41        62.76        32.48 
TCGA-GN-A26D 
       39.58 

  SIGLEC14 MUTATED SIGLEC14 WILD-TYPE 
             10.09               0.20 
  SIGLEC14 MUTATED SIGLEC14 WILD-TYPE 
            194.83             357.37 
  SIGLEC14 MUTATED SIGLEC14 WILD-TYPE 
             43.23              47.54 
[1] "10.1 - 194.8 (43.2)" "0.2 - 357.4 (47.5)" 
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JF         TCGA-D3-A2JK 
"SIGLEC14 WILD-TYPE"   "SIGLEC14 MUTATED" "SIGLEC14 WILD-TYPE" 
        TCGA-D3-A3C6         TCGA-D3-A3CC         TCGA-D3-A3CE 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-D3-A3CF         TCGA-D3-A3MO         TCGA-D3-A3MV 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-D9-A148         TCGA-D9-A149         TCGA-D9-A1JW 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-D9-A1JX         TCGA-DA-A1HV         TCGA-DA-A1HW 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-DA-A1HY         TCGA-DA-A1I0         TCGA-DA-A1I1 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE"   "SIGLEC14 MUTATED" 
        TCGA-DA-A1I2         TCGA-DA-A1I4         TCGA-DA-A1I5 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-DA-A1I7         TCGA-DA-A1I8         TCGA-DA-A1IA 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-DA-A1IB         TCGA-DA-A1IC         TCGA-DA-A3F2 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-DA-A3F3         TCGA-DA-A3F5         TCGA-DA-A3F8 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A17X         TCGA-EE-A17Z         TCGA-EE-A181 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A182         TCGA-EE-A183         TCGA-EE-A185 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A20B         TCGA-EE-A20F         TCGA-EE-A20H 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A29A         TCGA-EE-A29C         TCGA-EE-A29D 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A29E         TCGA-EE-A29H         TCGA-EE-A29L 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A29M         TCGA-EE-A29N         TCGA-EE-A29P 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A29Q         TCGA-EE-A29R         TCGA-EE-A29S 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A29T         TCGA-EE-A29V         TCGA-EE-A29X 
"SIGLEC14 WILD-TYPE"   "SIGLEC14 MUTATED" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2A0         TCGA-EE-A2A1         TCGA-EE-A2A2 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2A5         TCGA-EE-A2A6         TCGA-EE-A2GB 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2GC         TCGA-EE-A2GD         TCGA-EE-A2GE 
  "SIGLEC14 MUTATED" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2GH         TCGA-EE-A2GI         TCGA-EE-A2GJ 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2GK         TCGA-EE-A2GL         TCGA-EE-A2GM 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2GN         TCGA-EE-A2GO         TCGA-EE-A2GP 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2GR         TCGA-EE-A2GS         TCGA-EE-A2GT 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2GU         TCGA-EE-A2M5         TCGA-EE-A2M6 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2M7         TCGA-EE-A2M8         TCGA-EE-A2MC 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2MD         TCGA-EE-A2ME         TCGA-EE-A2MG 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2MH         TCGA-EE-A2MI         TCGA-EE-A2MJ 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2MK         TCGA-EE-A2ML         TCGA-EE-A2MM 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2MN         TCGA-EE-A2MP         TCGA-EE-A2MQ 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2MR         TCGA-EE-A2MS         TCGA-EE-A2MT 
  "SIGLEC14 MUTATED" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2MU         TCGA-EE-A3AA         TCGA-EE-A3AB 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A3AC         TCGA-EE-A3AD         TCGA-EE-A3AE 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A3AF         TCGA-EE-A3AG         TCGA-EE-A3AH 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-ER-A19D         TCGA-ER-A19F         TCGA-ER-A19J 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-ER-A19L         TCGA-ER-A19N         TCGA-ER-A1A1 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-ER-A3ET         TCGA-FS-A1YW         TCGA-FS-A1YX 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-FS-A1YY         TCGA-FS-A1Z0         TCGA-FS-A1Z3 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-FS-A1Z4         TCGA-FS-A1Z7         TCGA-FS-A1ZA 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-FS-A1ZB         TCGA-FS-A1ZC         TCGA-FS-A1ZD 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZQ 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-FS-A1ZR         TCGA-FS-A1ZS         TCGA-FS-A1ZT 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-FS-A1ZU         TCGA-FS-A1ZW         TCGA-FS-A1ZY 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE"   "SIGLEC14 MUTATED" 
        TCGA-FS-A1ZZ         TCGA-FW-A3I3         TCGA-GN-A261 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-GN-A262         TCGA-GN-A264         TCGA-GN-A265 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-GN-A266         TCGA-GN-A267         TCGA-GN-A268 
  "SIGLEC14 MUTATED" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-GN-A26A         TCGA-GN-A26D 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JF         TCGA-D3-A2JK 
"SIGLEC14 WILD-TYPE"   "SIGLEC14 MUTATED" "SIGLEC14 WILD-TYPE" 
        TCGA-D3-A3C6         TCGA-D3-A3CC         TCGA-D3-A3CE 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-D3-A3CF         TCGA-D3-A3MO         TCGA-D3-A3MV 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-D9-A148         TCGA-D9-A149         TCGA-D9-A1JW 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-D9-A1JX         TCGA-DA-A1HV         TCGA-DA-A1HW 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-DA-A1HY         TCGA-DA-A1I0         TCGA-DA-A1I1 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE"   "SIGLEC14 MUTATED" 
        TCGA-DA-A1I2         TCGA-DA-A1I4         TCGA-DA-A1I5 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-DA-A1I7         TCGA-DA-A1I8         TCGA-DA-A1IA 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-DA-A1IB         TCGA-DA-A1IC         TCGA-DA-A3F2 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-DA-A3F3         TCGA-DA-A3F5         TCGA-DA-A3F8 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A17X         TCGA-EE-A17Z         TCGA-EE-A181 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A182         TCGA-EE-A183         TCGA-EE-A185 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A20B         TCGA-EE-A20F         TCGA-EE-A20H 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A29A         TCGA-EE-A29C         TCGA-EE-A29D 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A29E         TCGA-EE-A29H         TCGA-EE-A29L 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A29M         TCGA-EE-A29N         TCGA-EE-A29P 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A29Q         TCGA-EE-A29R         TCGA-EE-A29S 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A29T         TCGA-EE-A29V         TCGA-EE-A29X 
"SIGLEC14 WILD-TYPE"   "SIGLEC14 MUTATED" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2A0         TCGA-EE-A2A1         TCGA-EE-A2A2 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2A5         TCGA-EE-A2A6         TCGA-EE-A2GB 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2GC         TCGA-EE-A2GD         TCGA-EE-A2GE 
  "SIGLEC14 MUTATED" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2GH         TCGA-EE-A2GI         TCGA-EE-A2GJ 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2GK         TCGA-EE-A2GL         TCGA-EE-A2GM 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2GN         TCGA-EE-A2GO         TCGA-EE-A2GP 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2GR         TCGA-EE-A2GS         TCGA-EE-A2GT 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2GU         TCGA-EE-A2M5         TCGA-EE-A2M6 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2M7         TCGA-EE-A2M8         TCGA-EE-A2MC 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2MD         TCGA-EE-A2ME         TCGA-EE-A2MG 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2MH         TCGA-EE-A2MI         TCGA-EE-A2MJ 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2MK         TCGA-EE-A2ML         TCGA-EE-A2MM 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2MN         TCGA-EE-A2MP         TCGA-EE-A2MQ 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2MR         TCGA-EE-A2MS         TCGA-EE-A2MT 
  "SIGLEC14 MUTATED" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2MU         TCGA-EE-A3AA         TCGA-EE-A3AB 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A3AC         TCGA-EE-A3AD         TCGA-EE-A3AE 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A3AF         TCGA-EE-A3AG         TCGA-EE-A3AH 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-ER-A19D         TCGA-ER-A19F         TCGA-ER-A19J 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-ER-A19L         TCGA-ER-A19N         TCGA-ER-A1A1 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-ER-A3ET         TCGA-FS-A1YW         TCGA-FS-A1YX 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-FS-A1YY         TCGA-FS-A1Z0         TCGA-FS-A1Z3 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-FS-A1Z4         TCGA-FS-A1Z7         TCGA-FS-A1ZA 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-FS-A1ZB         TCGA-FS-A1ZC         TCGA-FS-A1ZD 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZQ 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-FS-A1ZR         TCGA-FS-A1ZS         TCGA-FS-A1ZT 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-FS-A1ZU         TCGA-FS-A1ZW         TCGA-FS-A1ZY 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE"   "SIGLEC14 MUTATED" 
        TCGA-FS-A1ZZ         TCGA-FW-A3I3         TCGA-GN-A261 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-GN-A262         TCGA-GN-A264         TCGA-GN-A265 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-GN-A266         TCGA-GN-A267         TCGA-GN-A268 
  "SIGLEC14 MUTATED" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-GN-A26A         TCGA-GN-A26D 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-D3-A1Q1         TCGA-D3-A1Q5         TCGA-D3-A1Q6 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-D3-A1Q7         TCGA-D3-A1Q8         TCGA-D3-A1Q9 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-D3-A2J6         TCGA-D3-A2J8         TCGA-D3-A2J9 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-D3-A2JD         TCGA-D3-A2JF         TCGA-D3-A2JK 
"SIGLEC14 WILD-TYPE"   "SIGLEC14 MUTATED" "SIGLEC14 WILD-TYPE" 
        TCGA-D3-A3C6         TCGA-D3-A3CC         TCGA-D3-A3CE 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-D3-A3CF         TCGA-D3-A3MO         TCGA-D3-A3MV 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-D9-A148         TCGA-D9-A149         TCGA-D9-A1JW 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-D9-A1JX         TCGA-DA-A1HV         TCGA-DA-A1HW 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-DA-A1HY         TCGA-DA-A1I0         TCGA-DA-A1I1 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE"   "SIGLEC14 MUTATED" 
        TCGA-DA-A1I2         TCGA-DA-A1I4         TCGA-DA-A1I5 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-DA-A1I7         TCGA-DA-A1I8         TCGA-DA-A1IA 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-DA-A1IB         TCGA-DA-A1IC         TCGA-DA-A3F2 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-DA-A3F3         TCGA-DA-A3F5         TCGA-DA-A3F8 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A17X         TCGA-EE-A17Z         TCGA-EE-A181 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A182         TCGA-EE-A183         TCGA-EE-A185 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A20B         TCGA-EE-A20F         TCGA-EE-A20H 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A29A         TCGA-EE-A29C         TCGA-EE-A29D 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A29E         TCGA-EE-A29H         TCGA-EE-A29L 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A29M         TCGA-EE-A29N         TCGA-EE-A29P 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A29Q         TCGA-EE-A29R         TCGA-EE-A29S 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A29T         TCGA-EE-A29V         TCGA-EE-A29X 
"SIGLEC14 WILD-TYPE"   "SIGLEC14 MUTATED" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2A0         TCGA-EE-A2A1         TCGA-EE-A2A2 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2A5         TCGA-EE-A2A6         TCGA-EE-A2GB 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2GC         TCGA-EE-A2GD         TCGA-EE-A2GE 
  "SIGLEC14 MUTATED" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2GH         TCGA-EE-A2GI         TCGA-EE-A2GJ 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2GK         TCGA-EE-A2GL         TCGA-EE-A2GM 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2GN         TCGA-EE-A2GO         TCGA-EE-A2GP 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2GR         TCGA-EE-A2GS         TCGA-EE-A2GT 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2GU         TCGA-EE-A2M5         TCGA-EE-A2M6 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2M7         TCGA-EE-A2M8         TCGA-EE-A2MC 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2MD         TCGA-EE-A2ME         TCGA-EE-A2MG 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2MH         TCGA-EE-A2MI         TCGA-EE-A2MJ 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2MK         TCGA-EE-A2ML         TCGA-EE-A2MM 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2MN         TCGA-EE-A2MP         TCGA-EE-A2MQ 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2MR         TCGA-EE-A2MS         TCGA-EE-A2MT 
  "SIGLEC14 MUTATED" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A2MU         TCGA-EE-A3AA         TCGA-EE-A3AB 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A3AC         TCGA-EE-A3AD         TCGA-EE-A3AE 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-EE-A3AF         TCGA-EE-A3AG         TCGA-EE-A3AH 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-ER-A19D         TCGA-ER-A19F         TCGA-ER-A19J 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-ER-A19L         TCGA-ER-A19N         TCGA-ER-A1A1 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-ER-A3ET         TCGA-FS-A1YW         TCGA-FS-A1YX 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-FS-A1YY         TCGA-FS-A1Z0         TCGA-FS-A1Z3 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-FS-A1Z4         TCGA-FS-A1Z7         TCGA-FS-A1ZA 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-FS-A1ZB         TCGA-FS-A1ZC         TCGA-FS-A1ZD 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-FS-A1ZE         TCGA-FS-A1ZF         TCGA-FS-A1ZG 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-FS-A1ZH         TCGA-FS-A1ZJ         TCGA-FS-A1ZK 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-FS-A1ZM         TCGA-FS-A1ZP         TCGA-FS-A1ZQ 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-FS-A1ZR         TCGA-FS-A1ZS         TCGA-FS-A1ZT 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-FS-A1ZU         TCGA-FS-A1ZW         TCGA-FS-A1ZY 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE"   "SIGLEC14 MUTATED" 
        TCGA-FS-A1ZZ         TCGA-FW-A3I3         TCGA-GN-A261 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-GN-A262         TCGA-GN-A264         TCGA-GN-A265 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-GN-A266         TCGA-GN-A267         TCGA-GN-A268 
  "SIGLEC14 MUTATED" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-GN-A26A         TCGA-GN-A26D 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
[1] "hr=" "1.2"
D93V2, continuous
                    vv
clus                 DISTANT METASTASIS PRIMARY TUMOR
  SIGLEC14 MUTATED                    3             0
  SIGLEC14 WILD-TYPE                 19             1
                    vv
clus                 REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  SIGLEC14 MUTATED                                                                                          2
  SIGLEC14 WILD-TYPE                                                                                       30
                    vv
clus                 REGIONAL LYMPH NODE
  SIGLEC14 MUTATED                     2
  SIGLEC14 WILD-TYPE                 102
D93V3, multiclass
                                                                                          clus
vv                                                                                         SIGLEC14 MUTATED
  DISTANT METASTASIS                                                                                      3
  PRIMARY TUMOR                                                                                           0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                2
  REGIONAL LYMPH NODE                                                                                     2
                                                                                          clus
vv                                                                                         SIGLEC14 WILD-TYPE
  DISTANT METASTASIS                                                                                       19
  PRIMARY TUMOR                                                                                             1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                 30
  REGIONAL LYMPH NODE                                                                                     102
D93V4, binary
                    cls
clus                  0  1
  SIGLEC14 MUTATED    0  7
  SIGLEC14 WILD-TYPE 60 92
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  SIGLEC14 MUTATED      0    7
  SIGLEC14 WILD-TYPE   60   92
        clus
vv       SIGLEC14 MUTATED SIGLEC14 WILD-TYPE
  FEMALE                0                 60
  MALE                  7                 92
                    vv
clus                  M0  M1 M1A M1B M1C
  SIGLEC14 MUTATED     6   0   0   0   0
  SIGLEC14 WILD-TYPE 132   2   1   2   2
D93V5, multiclass
                    vv
clus                 N0 N1 N1A N1B N2A N2B N2C N3 NX
  SIGLEC14 MUTATED    4  0   0   1   0   0   0  1  0
  SIGLEC14 WILD-TYPE 83  2   7  14   4  10   5 13  2
D93V6, multiclass
D93V7, continuous
                    vv
clus                 I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  SIGLEC14 MUTATED             0       1        1        0        0         0
  SIGLEC14 WILD-TYPE           3      16        9       12       18         7
                    vv
clus                 STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  SIGLEC14 MUTATED           2         0         0          0          0
  SIGLEC14 WILD-TYPE         7         7         7          6         17
                    vv
clus                 STAGE IIIC STAGE IV
  SIGLEC14 MUTATED            2        0
  SIGLEC14 WILD-TYPE         19        5
D93V8, multiclass

Clustering(94) Variable = TUBB8 MUTATION ANALYSIS
D94V1, survival
                 sevent
clus2              0  1
  TUBB8 MUTATED    3  4
  TUBB8 WILD-TYPE 70 81
  TUBB8 MUTATED TUBB8 WILD-TYPE 
              7             151 
  TUBB8 MUTATED TUBB8 WILD-TYPE 
              4              81 
$`TUBB8 MUTATED`
TCGA-DA-A1IA TCGA-EE-A2GL TCGA-EE-A2GR TCGA-EE-A3AD TCGA-ER-A19L TCGA-FS-A1YW 
       65.92        55.00        14.30         3.68       131.08       216.92 
TCGA-FS-A1ZP 
       74.73 

$`TUBB8 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW 
      148.31        49.74         2.70         6.38        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       61.18        53.92        23.44        68.09        28.60        10.49 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 
      215.44        15.68        29.82         8.65        33.73        14.70 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A 
       26.86         4.93       109.64        78.87       168.26        63.32 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M 
       47.84        13.97        39.62        32.19         2.56        44.35 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T 
       18.58        56.42        37.35        14.47        55.89       345.96 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
       25.87        17.92        46.82        78.94        24.43        39.25 
TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH 
       58.75        47.54        43.23       314.53       135.91       182.01 
TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO 
       22.55        89.33        54.71        75.48        90.94       101.95 
TCGA-EE-A2GP TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 
       13.87        55.59        19.56        67.13        21.67       129.24 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG 
       28.80        19.76        61.51        47.28       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM 
       16.96       204.62        96.23       144.76       203.01       167.87 
TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT 
       47.54       248.61        43.23       103.56       136.44        41.59 
TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AE TCGA-EE-A3AF 
       53.26         4.24       122.73        25.84        26.73        13.81 
TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19N 
       23.47       138.77        12.59        26.37         6.41        44.05 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 
       79.99        80.32        48.59       228.59       202.62        20.91 
TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD 
       28.08         7.76        27.68        48.85       357.37        53.52 
TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK 
       40.27        15.45         9.70        32.71        47.38        23.93 
TCGA-FS-A1ZM TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU 
      101.26       133.55        11.41       148.77        53.16        26.56 
TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 
       49.48        27.06        27.02         0.20        76.41       120.46 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
      117.93        84.72        10.09        64.41        62.76        32.48 
TCGA-GN-A26D 
       39.58 

  TUBB8 MUTATED TUBB8 WILD-TYPE 
           3.68            0.20 
  TUBB8 MUTATED TUBB8 WILD-TYPE 
         216.92          357.37 
  TUBB8 MUTATED TUBB8 WILD-TYPE 
          65.92           47.38 
[1] "3.7 - 216.9 (65.9)" "0.2 - 357.4 (47.4)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
  "TUBB8 MUTATED" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
  "TUBB8 MUTATED" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"TUBB8 WILD-TYPE"   "TUBB8 MUTATED" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"TUBB8 WILD-TYPE"   "TUBB8 MUTATED" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"TUBB8 WILD-TYPE"   "TUBB8 MUTATED" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"TUBB8 WILD-TYPE"   "TUBB8 MUTATED" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE"   "TUBB8 MUTATED" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
  "TUBB8 MUTATED" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
  "TUBB8 MUTATED" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"TUBB8 WILD-TYPE"   "TUBB8 MUTATED" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"TUBB8 WILD-TYPE"   "TUBB8 MUTATED" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"TUBB8 WILD-TYPE"   "TUBB8 MUTATED" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"TUBB8 WILD-TYPE"   "TUBB8 MUTATED" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE"   "TUBB8 MUTATED" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
  "TUBB8 MUTATED" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
  "TUBB8 MUTATED" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"TUBB8 WILD-TYPE"   "TUBB8 MUTATED" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"TUBB8 WILD-TYPE"   "TUBB8 MUTATED" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"TUBB8 WILD-TYPE"   "TUBB8 MUTATED" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"TUBB8 WILD-TYPE"   "TUBB8 MUTATED" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE"   "TUBB8 MUTATED" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"TUBB8 WILD-TYPE" "TUBB8 WILD-TYPE" 
[1] "hr=" "1.2"
D94V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  TUBB8 MUTATED                    1             0
  TUBB8 WILD-TYPE                 21             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  TUBB8 MUTATED                                                                                          1
  TUBB8 WILD-TYPE                                                                                       31
                 vv
clus              REGIONAL LYMPH NODE
  TUBB8 MUTATED                     5
  TUBB8 WILD-TYPE                  99
D94V3, multiclass
                                                                                          clus
vv                                                                                         TUBB8 MUTATED
  DISTANT METASTASIS                                                                                   1
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             1
  REGIONAL LYMPH NODE                                                                                  5
                                                                                          clus
vv                                                                                         TUBB8 WILD-TYPE
  DISTANT METASTASIS                                                                                    21
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              31
  REGIONAL LYMPH NODE                                                                                   99
D94V4, binary
                 cls
clus               0  1
  TUBB8 MUTATED    2  5
  TUBB8 WILD-TYPE 58 94
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TUBB8 MUTATED      2    5
  TUBB8 WILD-TYPE   58   94
        clus
vv       TUBB8 MUTATED TUBB8 WILD-TYPE
  FEMALE             2              58
  MALE               5              94
                 vv
clus               M0  M1 M1A M1B M1C
  TUBB8 MUTATED     5   0   0   0   0
  TUBB8 WILD-TYPE 133   2   1   2   2
D94V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2A N2B N2C N3 NX
  TUBB8 MUTATED    4  0   0   1   0   0   0  0  0
  TUBB8 WILD-TYPE 83  2   7  14   4  10   5 14  2
D94V6, multiclass
D94V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  TUBB8 MUTATED             0       0        0        1        2         1
  TUBB8 WILD-TYPE           3      17       10       11       16         6
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  TUBB8 MUTATED           0         0         0          0          1
  TUBB8 WILD-TYPE         9         7         7          6         16
                 vv
clus              STAGE IIIC STAGE IV
  TUBB8 MUTATED            0        0
  TUBB8 WILD-TYPE         21        5
D94V8, multiclass

Clustering(95) Variable = ZIM3 MUTATION ANALYSIS
D95V1, survival
                sevent
clus2             0  1
  ZIM3 MUTATED   10  4
  ZIM3 WILD-TYPE 63 81
  ZIM3 MUTATED ZIM3 WILD-TYPE 
            14            144 
  ZIM3 MUTATED ZIM3 WILD-TYPE 
             4             81 
$`ZIM3 MUTATED`
TCGA-D3-A2J8 TCGA-D3-A2JF TCGA-DA-A1IC TCGA-EE-A29M TCGA-EE-A2GD TCGA-EE-A2GE 
       65.49        48.76        68.09        44.35       314.53       135.91 
TCGA-EE-A2GJ TCGA-EE-A2GO TCGA-EE-A2M6 TCGA-EE-A2MI TCGA-EE-A2MU TCGA-EE-A3AG 
       89.33       101.95       129.24       204.62        53.26        23.47 
TCGA-ER-A19N TCGA-FS-A1ZK 
       44.05        23.93 

$`ZIM3 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC 
       43.40        23.77        11.87        12.10        58.03        71.24 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 TCGA-D9-A149 
       60.23        24.53         9.30        21.47       148.31        49.74 
TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        2.70         6.38        48.89        36.03       117.17        20.38 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
      194.83       176.55        35.93       107.34        61.18        53.92 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       65.92        23.44        28.60        10.49       215.44        15.68 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       29.82         8.65        33.73        14.70        26.86         4.93 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
      109.64        78.87       168.26        63.32        47.84        13.97 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       39.62        32.19         2.56        18.58        56.42        37.35 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
       14.47        55.89       345.96        25.87        17.92        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC 
       78.94        24.43        39.25        58.75        47.54        43.23 
TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN 
      182.01        22.55        54.71        55.00        75.48        90.94 
TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 
       13.87        14.30        55.59        19.56        67.13        21.67 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG 
       28.80        19.76        61.51        47.28       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN 
       16.96        96.23       144.76       203.01       167.87        47.54 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A3AA 
      248.61        43.23       103.56       136.44        41.59         4.24 
TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AH 
      122.73        25.84         3.68        26.73        13.81       138.77 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A1A1 TCGA-ER-A3ET 
       12.59        26.37         6.41       131.08        79.99        80.32 
TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 
      216.92        48.59       228.59       202.62        20.91        28.08 
TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE 
        7.76        27.68        48.85       357.37        53.52        40.27 
TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZM TCGA-FS-A1ZP 
       15.45         9.70        32.71        47.38       101.26        74.73 
TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW 
      133.55        11.41       148.77        53.16        26.56        49.48 
TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
       27.06        27.02         0.20        76.41       120.46       117.93 
TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       84.72        10.09        64.41        62.76        32.48        39.58 

  ZIM3 MUTATED ZIM3 WILD-TYPE 
         23.47           0.20 
  ZIM3 MUTATED ZIM3 WILD-TYPE 
        314.53         357.37 
  ZIM3 MUTATED ZIM3 WILD-TYPE 
         66.79          47.05 
[1] "23.5 - 314.5 (66.8)" "0.2 - 357.4 (47.0)" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED"   "ZIM3 MUTATED" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"ZIM3 WILD-TYPE"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
  "ZIM3 MUTATED" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"ZIM3 WILD-TYPE"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED"   "ZIM3 MUTATED" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"ZIM3 WILD-TYPE"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
  "ZIM3 MUTATED" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"ZIM3 WILD-TYPE"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED"   "ZIM3 MUTATED" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"ZIM3 WILD-TYPE"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
  "ZIM3 MUTATED" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"ZIM3 WILD-TYPE"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
[1] "hr=" "2.8"
D95V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  ZIM3 MUTATED                    2             1
  ZIM3 WILD-TYPE                 20             0
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  ZIM3 MUTATED                                                                                          5
  ZIM3 WILD-TYPE                                                                                       27
                vv
clus             REGIONAL LYMPH NODE
  ZIM3 MUTATED                     6
  ZIM3 WILD-TYPE                  98
D95V3, multiclass
                                                                                          clus
vv                                                                                         ZIM3 MUTATED
  DISTANT METASTASIS                                                                                  2
  PRIMARY TUMOR                                                                                       1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            5
  REGIONAL LYMPH NODE                                                                                 6
                                                                                          clus
vv                                                                                         ZIM3 WILD-TYPE
  DISTANT METASTASIS                                                                                   20
  PRIMARY TUMOR                                                                                         0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             27
  REGIONAL LYMPH NODE                                                                                  98
D95V4, binary
                cls
clus              0  1
  ZIM3 MUTATED    3 11
  ZIM3 WILD-TYPE 57 88
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZIM3 MUTATED      3   11
  ZIM3 WILD-TYPE   57   88
        clus
vv       ZIM3 MUTATED ZIM3 WILD-TYPE
  FEMALE            3             57
  MALE             11             88
                vv
clus              M0  M1 M1A M1B M1C
  ZIM3 MUTATED    12   0   0   0   0
  ZIM3 WILD-TYPE 126   2   1   2   2
D95V5, multiclass
                vv
clus             N0 N1 N1A N1B N2A N2B N2C N3 NX
  ZIM3 MUTATED   11  0   0   0   0   0   1  0  0
  ZIM3 WILD-TYPE 76  2   7  15   4  10   4 14  2
D95V6, multiclass
D95V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  ZIM3 MUTATED             0       2        3        2        2         0
  ZIM3 WILD-TYPE           3      15        7       10       16         7
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  ZIM3 MUTATED           2         0         0          0          1          0
  ZIM3 WILD-TYPE         7         7         7          6         16         21
                vv
clus             STAGE IV
  ZIM3 MUTATED          0
  ZIM3 WILD-TYPE        5
D95V8, multiclass

Clustering(96) Variable = PRC1 MUTATION ANALYSIS
D96V1, survival
                sevent
clus2             0  1
  PRC1 MUTATED    4  5
  PRC1 WILD-TYPE 69 80
  PRC1 MUTATED PRC1 WILD-TYPE 
             9            149 
  PRC1 MUTATED PRC1 WILD-TYPE 
             5             80 
$`PRC1 MUTATED`
TCGA-D3-A1Q6 TCGA-D3-A2JK TCGA-DA-A1HV TCGA-EE-A183 TCGA-EE-A2A5 TCGA-EE-A2GH 
       71.80        12.10        48.89        26.86        39.25       182.01 
TCGA-EE-A2GM TCGA-EE-A3AD TCGA-FS-A1ZK 
       75.48         3.68        23.93 

$`PRC1 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.57       112.54       121.22        28.08        31.59        43.40 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A3C6 TCGA-D3-A3CC 
       65.49        23.77        11.87        48.76        58.03        71.24 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 TCGA-D9-A149 
       60.23        24.53         9.30        21.47       148.31        49.74 
TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
        2.70         6.38        36.03       117.17        20.38       194.83 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
      176.55        35.93       107.34        61.18        53.92        65.92 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
       23.44        68.09        28.60        10.49       215.44        15.68 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A185 TCGA-EE-A20B 
       29.82         8.65        33.73        14.70         4.93       109.64 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
       78.87       168.26        63.32        47.84        13.97        39.62 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       32.19         2.56        44.35        18.58        56.42        37.35 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
       14.47        55.89       345.96        25.87        17.92        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD 
       78.94        24.43        58.75        47.54        43.23       314.53 
TCGA-EE-A2GE TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GN 
      135.91        22.55        89.33        54.71        55.00        90.94 
TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU 
      101.95        13.87        14.30        55.59        19.56        67.13 
TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD 
       21.67       129.24        28.80        19.76        61.51        47.28 
TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK 
      103.27       103.17        16.96       204.62        96.23       144.76 
TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR 
      203.01       167.87        47.54       248.61        43.23       103.56 
TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC 
      136.44        41.59        53.26         4.24       122.73        25.84 
TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F 
       26.73        13.81        23.47       138.77        12.59        26.37 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW 
        6.41       131.08        44.05        79.99        80.32       216.92 
TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 
       48.59       228.59       202.62        20.91        28.08         7.76 
TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF 
       27.68        48.85       357.37        53.52        40.27        15.45 
TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ 
        9.70        32.71        47.38       101.26        74.73       133.55 
TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY 
       11.41       148.77        53.16        26.56        49.48        27.06 
TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
       27.02         0.20        76.41       120.46       117.93        84.72 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       10.09        64.41        62.76        32.48        39.58 

  PRC1 MUTATED PRC1 WILD-TYPE 
          3.68           0.20 
  PRC1 MUTATED PRC1 WILD-TYPE 
        182.01         357.37 
  PRC1 MUTATED PRC1 WILD-TYPE 
         39.25          47.54 
[1] "3.7 - 182.0 (39.2)" "0.2 - 357.4 (47.5)"
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE"   "PRC1 MUTATED" "PRC1 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE"   "PRC1 MUTATED" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE"   "PRC1 MUTATED" "PRC1 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE"   "PRC1 MUTATED" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE"   "PRC1 MUTATED" "PRC1 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
  "PRC1 MUTATED" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"PRC1 WILD-TYPE"   "PRC1 MUTATED" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"PRC1 WILD-TYPE"   "PRC1 MUTATED" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"PRC1 WILD-TYPE"   "PRC1 MUTATED" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE"   "PRC1 MUTATED" "PRC1 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE"   "PRC1 MUTATED" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE"   "PRC1 MUTATED" "PRC1 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE"   "PRC1 MUTATED" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE"   "PRC1 MUTATED" "PRC1 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
  "PRC1 MUTATED" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"PRC1 WILD-TYPE"   "PRC1 MUTATED" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"PRC1 WILD-TYPE"   "PRC1 MUTATED" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"PRC1 WILD-TYPE"   "PRC1 MUTATED" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE"   "PRC1 MUTATED" "PRC1 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE"   "PRC1 MUTATED" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE"   "PRC1 MUTATED" "PRC1 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE"   "PRC1 MUTATED" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE"   "PRC1 MUTATED" "PRC1 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
  "PRC1 MUTATED" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"PRC1 WILD-TYPE"   "PRC1 MUTATED" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"PRC1 WILD-TYPE"   "PRC1 MUTATED" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"PRC1 WILD-TYPE"   "PRC1 MUTATED" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"PRC1 WILD-TYPE" "PRC1 WILD-TYPE" 
[1] "hr=" "1.2"
D96V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  PRC1 MUTATED                    1             0
  PRC1 WILD-TYPE                 21             1
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  PRC1 MUTATED                                                                                          3
  PRC1 WILD-TYPE                                                                                       29
                vv
clus             REGIONAL LYMPH NODE
  PRC1 MUTATED                     5
  PRC1 WILD-TYPE                  99
D96V3, multiclass
                                                                                          clus
vv                                                                                         PRC1 MUTATED
  DISTANT METASTASIS                                                                                  1
  PRIMARY TUMOR                                                                                       0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            3
  REGIONAL LYMPH NODE                                                                                 5
                                                                                          clus
vv                                                                                         PRC1 WILD-TYPE
  DISTANT METASTASIS                                                                                   21
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             29
  REGIONAL LYMPH NODE                                                                                  99
D96V4, binary
                cls
clus              0  1
  PRC1 MUTATED    2  7
  PRC1 WILD-TYPE 58 92
[1] "tbl2"
                cls
clus             [,1] [,2]
  PRC1 MUTATED      2    7
  PRC1 WILD-TYPE   58   92
        clus
vv       PRC1 MUTATED PRC1 WILD-TYPE
  FEMALE            2             58
  MALE              7             92
                vv
clus              M0  M1 M1A M1B M1C
  PRC1 MUTATED     8   0   0   0   0
  PRC1 WILD-TYPE 130   2   1   2   2
D96V5, multiclass
                vv
clus             N0 N1 N1A N1B N2A N2B N2C N3 NX
  PRC1 MUTATED    5  0   0   1   0   2   0  0  0
  PRC1 WILD-TYPE 82  2   7  14   4   8   5 14  2
D96V6, multiclass
D96V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  PRC1 MUTATED             0       2        0        1        1         0
  PRC1 WILD-TYPE           3      15       10       11       17         7
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  PRC1 MUTATED           0         1         1          0          1          1
  PRC1 WILD-TYPE         9         6         6          6         16         20
                vv
clus             STAGE IV
  PRC1 MUTATED          0
  PRC1 WILD-TYPE        5
D96V8, multiclass

Clustering(97) Variable = MUM1L1 MUTATION ANALYSIS
D97V1, survival
                  sevent
clus2               0  1
  MUM1L1 MUTATED    9  7
  MUM1L1 WILD-TYPE 64 78
  MUM1L1 MUTATED MUM1L1 WILD-TYPE 
              16              142 
  MUM1L1 MUTATED MUM1L1 WILD-TYPE 
               7               78 
$`MUM1L1 MUTATED`
TCGA-D3-A1Q6 TCGA-D3-A3MV TCGA-DA-A3F5 TCGA-EE-A29H TCGA-EE-A29P TCGA-EE-A29R 
       71.80        21.47       215.44        32.19        56.42        14.47 
TCGA-EE-A29V TCGA-EE-A2GH TCGA-EE-A2M5 TCGA-EE-A2MD TCGA-EE-A2MS TCGA-FS-A1ZB 
       25.87       182.01        21.67        47.28       136.44        48.85 
TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZZ TCGA-GN-A268 
      148.77        53.16        27.02        62.76 

$`MUM1L1 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.57       112.54       121.22        28.08        31.59        43.40 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 
       65.49        23.77        11.87        48.76        12.10        58.03 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D9-A148 TCGA-D9-A149 
       71.24        60.23        24.53         9.30       148.31        49.74 
TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        2.70         6.38        48.89        36.03       117.17        20.38 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
      194.83       176.55        35.93       107.34        61.18        53.92 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F8 
       65.92        23.44        68.09        28.60        10.49        15.68 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       29.82         8.65        33.73        14.70        26.86         4.93 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
      109.64        78.87       168.26        63.32        47.84        13.97 
TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29Q TCGA-EE-A29S 
       39.62         2.56        44.35        18.58        37.35        55.89 
TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
      345.96        17.92        46.82        78.94        24.43        39.25 
TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GI 
       58.75        47.54        43.23       314.53       135.91        22.55 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO 
       89.33        54.71        55.00        75.48        90.94       101.95 
TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M6 
       13.87        14.30        55.59        19.56        67.13       129.24 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH 
       28.80        19.76        61.51       103.27       103.17        16.96 
TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN 
      204.62        96.23       144.76       203.01       167.87        47.54 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA 
      248.61        43.23       103.56        41.59        53.26         4.24 
TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG 
      122.73        25.84         3.68        26.73        13.81        23.47 
TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N 
      138.77        12.59        26.37         6.41       131.08        44.05 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 
       79.99        80.32       216.92        48.59       228.59       202.62 
TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZC TCGA-FS-A1ZD 
       20.91        28.08         7.76        27.68       357.37        53.52 
TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK 
       40.27        15.45         9.70        32.71        47.38        23.93 
TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZU TCGA-FS-A1ZW 
      101.26        74.73       133.55        11.41        26.56        49.48 
TCGA-FS-A1ZY TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
       27.06         0.20        76.41       120.46       117.93        84.72 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A26A TCGA-GN-A26D 
       10.09        64.41        32.48        39.58 

  MUM1L1 MUTATED MUM1L1 WILD-TYPE 
           14.47             0.20 
  MUM1L1 MUTATED MUM1L1 WILD-TYPE 
          215.44           357.37 
  MUM1L1 MUTATED MUM1L1 WILD-TYPE 
          51.005           47.460 
[1] "14.5 - 215.4 (51.0)" "0.2 - 357.4 (47.5)" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
  "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
  "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
  "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED"   "MUM1L1 MUTATED" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
  "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
  "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
  "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED"   "MUM1L1 MUTATED" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
  "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
  "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
  "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED"   "MUM1L1 MUTATED" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE"   "MUM1L1 MUTATED" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"MUM1L1 WILD-TYPE" "MUM1L1 WILD-TYPE" 
[1] "hr=" "1.4"
D97V2, continuous
                  vv
clus               DISTANT METASTASIS PRIMARY TUMOR
  MUM1L1 MUTATED                    4             0
  MUM1L1 WILD-TYPE                 18             1
                  vv
clus               REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  MUM1L1 MUTATED                                                                                          2
  MUM1L1 WILD-TYPE                                                                                       30
                  vv
clus               REGIONAL LYMPH NODE
  MUM1L1 MUTATED                    10
  MUM1L1 WILD-TYPE                  94
D97V3, multiclass
                                                                                          clus
vv                                                                                         MUM1L1 MUTATED
  DISTANT METASTASIS                                                                                    4
  PRIMARY TUMOR                                                                                         0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              2
  REGIONAL LYMPH NODE                                                                                  10
                                                                                          clus
vv                                                                                         MUM1L1 WILD-TYPE
  DISTANT METASTASIS                                                                                     18
  PRIMARY TUMOR                                                                                           1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               30
  REGIONAL LYMPH NODE                                                                                    94
D97V4, binary
                  cls
clus                0  1
  MUM1L1 MUTATED    6 10
  MUM1L1 WILD-TYPE 54 89
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MUM1L1 MUTATED      6   10
  MUM1L1 WILD-TYPE   54   89
        clus
vv       MUM1L1 MUTATED MUM1L1 WILD-TYPE
  FEMALE              6               54
  MALE               10               89
                  vv
clus                M0  M1 M1A M1B M1C
  MUM1L1 MUTATED    16   0   0   0   0
  MUM1L1 WILD-TYPE 122   2   1   2   2
D97V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2A N2B N2C N3 NX
  MUM1L1 MUTATED   10  0   0   4   1   0   0  1  0
  MUM1L1 WILD-TYPE 77  2   7  11   3  10   5 13  2
D97V6, multiclass
D97V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  MUM1L1 MUTATED             0       2        1        0        4         0
  MUM1L1 WILD-TYPE           3      15        9       12       14         7
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  MUM1L1 MUTATED           2         1         2          0          1
  MUM1L1 WILD-TYPE         7         6         5          6         16
                  vv
clus               STAGE IIIC STAGE IV
  MUM1L1 MUTATED            3        0
  MUM1L1 WILD-TYPE         18        5
D97V8, multiclass

Clustering(98) Variable = TRIM58 MUTATION ANALYSIS
D98V1, survival
                  sevent
clus2               0  1
  TRIM58 MUTATED    7  5
  TRIM58 WILD-TYPE 66 80
  TRIM58 MUTATED TRIM58 WILD-TYPE 
              12              146 
  TRIM58 MUTATED TRIM58 WILD-TYPE 
               5               80 
$`TRIM58 MUTATED`
TCGA-D9-A1JW TCGA-DA-A1IC TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A2GD TCGA-EE-A2GJ 
        2.70        68.09        39.62         2.56       314.53        89.33 
TCGA-EE-A2GO TCGA-EE-A2M5 TCGA-EE-A2MM TCGA-EE-A2MR TCGA-EE-A2MS TCGA-FS-A1Z3 
      101.95        21.67       167.87       103.56       136.44        20.91 

$`TRIM58 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
      148.31        49.74         6.38        48.89        36.03       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
       20.38       194.83       176.55        35.93       107.34        61.18 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       53.92        65.92        23.44        28.60        10.49       215.44 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
       15.68        29.82         8.65        33.73        14.70        26.86 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.93       109.64        78.87       168.26        63.32        47.84 
TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       13.97        32.19        44.35        18.58        56.42        37.35 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
       14.47        55.89       345.96        25.87        17.92        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC 
       78.94        24.43        39.25        58.75        47.54        43.23 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM 
      135.91       182.01        22.55        54.71        55.00        75.48 
TCGA-EE-A2GN TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU 
       90.94        13.87        14.30        55.59        19.56        67.13 
TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME 
      129.24        28.80        19.76        61.51        47.28       103.27 
TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML 
      103.17        16.96       204.62        96.23       144.76       203.01 
TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA 
       47.54       248.61        43.23        41.59        53.26         4.24 
TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG 
      122.73        25.84         3.68        26.73        13.81        23.47 
TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N 
      138.77        12.59        26.37         6.41       131.08        44.05 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 
       79.99        80.32       216.92        48.59       228.59       202.62 
TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD 
       28.08         7.76        27.68        48.85       357.37        53.52 
TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK 
       40.27        15.45         9.70        32.71        47.38        23.93 
TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT 
      101.26        74.73       133.55        11.41       148.77        53.16 
TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 
       26.56        49.48        27.06        27.02         0.20        76.41 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 
      120.46       117.93        84.72        10.09        64.41        62.76 
TCGA-GN-A26A TCGA-GN-A26D 
       32.48        39.58 

  TRIM58 MUTATED TRIM58 WILD-TYPE 
            2.56             0.20 
  TRIM58 MUTATED TRIM58 WILD-TYPE 
          314.53           357.37 
  TRIM58 MUTATED TRIM58 WILD-TYPE 
           78.71            47.46 
[1] "2.6 - 314.5 (78.7)" "0.2 - 357.4 (47.5)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED"   "TRIM58 MUTATED" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED"   "TRIM58 MUTATED" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED"   "TRIM58 MUTATED" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
[1] "hr=" "1.6"
D98V2, continuous
                  vv
clus               DISTANT METASTASIS PRIMARY TUMOR
  TRIM58 MUTATED                    1             0
  TRIM58 WILD-TYPE                 21             1
                  vv
clus               REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  TRIM58 MUTATED                                                                                          3
  TRIM58 WILD-TYPE                                                                                       29
                  vv
clus               REGIONAL LYMPH NODE
  TRIM58 MUTATED                     8
  TRIM58 WILD-TYPE                  96
D98V3, multiclass
                                                                                          clus
vv                                                                                         TRIM58 MUTATED
  DISTANT METASTASIS                                                                                    1
  PRIMARY TUMOR                                                                                         0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              3
  REGIONAL LYMPH NODE                                                                                   8
                                                                                          clus
vv                                                                                         TRIM58 WILD-TYPE
  DISTANT METASTASIS                                                                                     21
  PRIMARY TUMOR                                                                                           1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               29
  REGIONAL LYMPH NODE                                                                                    96
D98V4, binary
                  cls
clus                0  1
  TRIM58 MUTATED    4  8
  TRIM58 WILD-TYPE 56 91
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM58 MUTATED      4    8
  TRIM58 WILD-TYPE   56   91
        clus
vv       TRIM58 MUTATED TRIM58 WILD-TYPE
  FEMALE              4               56
  MALE                8               91
                  vv
clus                M0  M1 M1A M1B M1C
  TRIM58 MUTATED    11   0   0   0   0
  TRIM58 WILD-TYPE 127   2   1   2   2
D98V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2A N2B N2C N3 NX
  TRIM58 MUTATED    7  0   0   1   1   0   1  1  0
  TRIM58 WILD-TYPE 80  2   7  14   3  10   4 13  2
D98V6, multiclass
D98V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  TRIM58 MUTATED             0       3        1        0        2         0
  TRIM58 WILD-TYPE           3      14        9       12       16         7
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  TRIM58 MUTATED           1         0         0          0          2
  TRIM58 WILD-TYPE         8         7         7          6         15
                  vv
clus               STAGE IIIC STAGE IV
  TRIM58 MUTATED            1        0
  TRIM58 WILD-TYPE         20        5
D98V8, multiclass

Clustering(99) Variable = ANKRD20A4 MUTATION ANALYSIS
D99V1, survival
                     sevent
clus2                  0  1
  ANKRD20A4 MUTATED    2  1
  ANKRD20A4 WILD-TYPE 71 84
  ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE 
                  3                 155 
  ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE 
                  1                  84 
$`ANKRD20A4 MUTATED`
TCGA-EE-A20F TCGA-EE-A29E TCGA-EE-A2MJ 
       78.87        39.62        96.23 

$`ANKRD20A4 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW 
      148.31        49.74         2.70         6.38        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       61.18        53.92        65.92        23.44        68.09        28.60 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
       10.49       215.44        15.68        29.82         8.65        33.73 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20H TCGA-EE-A29A 
       14.70        26.86         4.93       109.64       168.26        63.32 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N 
       47.84        13.97        32.19         2.56        44.35        18.58 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V 
       56.42        37.35        14.47        55.89       345.96        25.87 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
       17.92        46.82        78.94        24.43        39.25        58.75 
TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI 
       47.54        43.23       314.53       135.91       182.01        22.55 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO 
       89.33        54.71        55.00        75.48        90.94       101.95 
TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 
       13.87        14.30        55.59        19.56        67.13        21.67 
TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME 
      129.24        28.80        19.76        61.51        47.28       103.27 
TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM 
      103.17        16.96       204.62       144.76       203.01       167.87 
TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT 
       47.54       248.61        43.23       103.56       136.44        41.59 
TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE 
       53.26         4.24       122.73        25.84         3.68        26.73 
TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       13.81        23.47       138.77        12.59        26.37         6.41 
TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX 
      131.08        44.05        79.99        80.32       216.92        48.59 
TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA 
      228.59       202.62        20.91        28.08         7.76        27.68 
TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG 
       48.85       357.37        53.52        40.27        15.45         9.70 
TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ 
       32.71        47.38        23.93       101.26        74.73       133.55 
TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY 
       11.41       148.77        53.16        26.56        49.48        27.06 
TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
       27.02         0.20        76.41       120.46       117.93        84.72 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       10.09        64.41        62.76        32.48        39.58 

  ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE 
              39.62                0.20 
  ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE 
              96.23              357.37 
  ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE 
              78.87               47.54 
[1] "39.6 - 96.2 (78.9)" "0.2 - 357.4 (47.5)"
         TCGA-D3-A1Q1          TCGA-D3-A1Q5          TCGA-D3-A1Q6 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A1Q7          TCGA-D3-A1Q8          TCGA-D3-A1Q9 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A2J6          TCGA-D3-A2J8          TCGA-D3-A2J9 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A2JD          TCGA-D3-A2JF          TCGA-D3-A2JK 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A3C6          TCGA-D3-A3CC          TCGA-D3-A3CE 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A3CF          TCGA-D3-A3MO          TCGA-D3-A3MV 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D9-A148          TCGA-D9-A149          TCGA-D9-A1JW 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D9-A1JX          TCGA-DA-A1HV          TCGA-DA-A1HW 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A1HY          TCGA-DA-A1I0          TCGA-DA-A1I1 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A1I2          TCGA-DA-A1I4          TCGA-DA-A1I5 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A1I7          TCGA-DA-A1I8          TCGA-DA-A1IA 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A1IB          TCGA-DA-A1IC          TCGA-DA-A3F2 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A3F3          TCGA-DA-A3F5          TCGA-DA-A3F8 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A17X          TCGA-EE-A17Z          TCGA-EE-A181 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A182          TCGA-EE-A183          TCGA-EE-A185 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A20B          TCGA-EE-A20F          TCGA-EE-A20H 
"ANKRD20A4 WILD-TYPE"   "ANKRD20A4 MUTATED" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A29A          TCGA-EE-A29C          TCGA-EE-A29D 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A29E          TCGA-EE-A29H          TCGA-EE-A29L 
  "ANKRD20A4 MUTATED" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A29M          TCGA-EE-A29N          TCGA-EE-A29P 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A29Q          TCGA-EE-A29R          TCGA-EE-A29S 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A29T          TCGA-EE-A29V          TCGA-EE-A29X 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2A0          TCGA-EE-A2A1          TCGA-EE-A2A2 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2A5          TCGA-EE-A2A6          TCGA-EE-A2GB 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2GC          TCGA-EE-A2GD          TCGA-EE-A2GE 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2GH          TCGA-EE-A2GI          TCGA-EE-A2GJ 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2GK          TCGA-EE-A2GL          TCGA-EE-A2GM 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2GN          TCGA-EE-A2GO          TCGA-EE-A2GP 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2GR          TCGA-EE-A2GS          TCGA-EE-A2GT 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2GU          TCGA-EE-A2M5          TCGA-EE-A2M6 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2M7          TCGA-EE-A2M8          TCGA-EE-A2MC 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2MD          TCGA-EE-A2ME          TCGA-EE-A2MG 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2MH          TCGA-EE-A2MI          TCGA-EE-A2MJ 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE"   "ANKRD20A4 MUTATED" 
         TCGA-EE-A2MK          TCGA-EE-A2ML          TCGA-EE-A2MM 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2MN          TCGA-EE-A2MP          TCGA-EE-A2MQ 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2MR          TCGA-EE-A2MS          TCGA-EE-A2MT 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2MU          TCGA-EE-A3AA          TCGA-EE-A3AB 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A3AC          TCGA-EE-A3AD          TCGA-EE-A3AE 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A3AF          TCGA-EE-A3AG          TCGA-EE-A3AH 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-ER-A19D          TCGA-ER-A19F          TCGA-ER-A19J 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-ER-A19L          TCGA-ER-A19N          TCGA-ER-A1A1 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-ER-A3ET          TCGA-FS-A1YW          TCGA-FS-A1YX 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-FS-A1YY          TCGA-FS-A1Z0          TCGA-FS-A1Z3 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-FS-A1Z4          TCGA-FS-A1Z7          TCGA-FS-A1ZA 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-FS-A1ZB          TCGA-FS-A1ZC          TCGA-FS-A1ZD 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-FS-A1ZE          TCGA-FS-A1ZF          TCGA-FS-A1ZG 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-FS-A1ZH          TCGA-FS-A1ZJ          TCGA-FS-A1ZK 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-FS-A1ZM          TCGA-FS-A1ZP          TCGA-FS-A1ZQ 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-FS-A1ZR          TCGA-FS-A1ZS          TCGA-FS-A1ZT 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-FS-A1ZU          TCGA-FS-A1ZW          TCGA-FS-A1ZY 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-FS-A1ZZ          TCGA-FW-A3I3          TCGA-GN-A261 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-GN-A262          TCGA-GN-A264          TCGA-GN-A265 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-GN-A266          TCGA-GN-A267          TCGA-GN-A268 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-GN-A26A          TCGA-GN-A26D 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A1Q1          TCGA-D3-A1Q5          TCGA-D3-A1Q6 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A1Q7          TCGA-D3-A1Q8          TCGA-D3-A1Q9 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A2J6          TCGA-D3-A2J8          TCGA-D3-A2J9 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A2JD          TCGA-D3-A2JF          TCGA-D3-A2JK 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A3C6          TCGA-D3-A3CC          TCGA-D3-A3CE 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A3CF          TCGA-D3-A3MO          TCGA-D3-A3MV 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D9-A148          TCGA-D9-A149          TCGA-D9-A1JW 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D9-A1JX          TCGA-DA-A1HV          TCGA-DA-A1HW 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A1HY          TCGA-DA-A1I0          TCGA-DA-A1I1 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A1I2          TCGA-DA-A1I4          TCGA-DA-A1I5 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A1I7          TCGA-DA-A1I8          TCGA-DA-A1IA 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A1IB          TCGA-DA-A1IC          TCGA-DA-A3F2 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A3F3          TCGA-DA-A3F5          TCGA-DA-A3F8 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A17X          TCGA-EE-A17Z          TCGA-EE-A181 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A182          TCGA-EE-A183          TCGA-EE-A185 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A20B          TCGA-EE-A20F          TCGA-EE-A20H 
"ANKRD20A4 WILD-TYPE"   "ANKRD20A4 MUTATED" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A29A          TCGA-EE-A29C          TCGA-EE-A29D 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A29E          TCGA-EE-A29H          TCGA-EE-A29L 
  "ANKRD20A4 MUTATED" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A29M          TCGA-EE-A29N          TCGA-EE-A29P 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A29Q          TCGA-EE-A29R          TCGA-EE-A29S 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A29T          TCGA-EE-A29V          TCGA-EE-A29X 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2A0          TCGA-EE-A2A1          TCGA-EE-A2A2 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2A5          TCGA-EE-A2A6          TCGA-EE-A2GB 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2GC          TCGA-EE-A2GD          TCGA-EE-A2GE 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2GH          TCGA-EE-A2GI          TCGA-EE-A2GJ 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2GK          TCGA-EE-A2GL          TCGA-EE-A2GM 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2GN          TCGA-EE-A2GO          TCGA-EE-A2GP 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2GR          TCGA-EE-A2GS          TCGA-EE-A2GT 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2GU          TCGA-EE-A2M5          TCGA-EE-A2M6 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2M7          TCGA-EE-A2M8          TCGA-EE-A2MC 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2MD          TCGA-EE-A2ME          TCGA-EE-A2MG 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2MH          TCGA-EE-A2MI          TCGA-EE-A2MJ 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE"   "ANKRD20A4 MUTATED" 
         TCGA-EE-A2MK          TCGA-EE-A2ML          TCGA-EE-A2MM 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2MN          TCGA-EE-A2MP          TCGA-EE-A2MQ 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2MR          TCGA-EE-A2MS          TCGA-EE-A2MT 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2MU          TCGA-EE-A3AA          TCGA-EE-A3AB 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A3AC          TCGA-EE-A3AD          TCGA-EE-A3AE 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A3AF          TCGA-EE-A3AG          TCGA-EE-A3AH 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-ER-A19D          TCGA-ER-A19F          TCGA-ER-A19J 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-ER-A19L          TCGA-ER-A19N          TCGA-ER-A1A1 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-ER-A3ET          TCGA-FS-A1YW          TCGA-FS-A1YX 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-FS-A1YY          TCGA-FS-A1Z0          TCGA-FS-A1Z3 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-FS-A1Z4          TCGA-FS-A1Z7          TCGA-FS-A1ZA 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-FS-A1ZB          TCGA-FS-A1ZC          TCGA-FS-A1ZD 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-FS-A1ZE          TCGA-FS-A1ZF          TCGA-FS-A1ZG 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-FS-A1ZH          TCGA-FS-A1ZJ          TCGA-FS-A1ZK 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-FS-A1ZM          TCGA-FS-A1ZP          TCGA-FS-A1ZQ 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-FS-A1ZR          TCGA-FS-A1ZS          TCGA-FS-A1ZT 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-FS-A1ZU          TCGA-FS-A1ZW          TCGA-FS-A1ZY 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-FS-A1ZZ          TCGA-FW-A3I3          TCGA-GN-A261 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-GN-A262          TCGA-GN-A264          TCGA-GN-A265 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-GN-A266          TCGA-GN-A267          TCGA-GN-A268 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-GN-A26A          TCGA-GN-A26D 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A1Q1          TCGA-D3-A1Q5          TCGA-D3-A1Q6 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A1Q7          TCGA-D3-A1Q8          TCGA-D3-A1Q9 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A2J6          TCGA-D3-A2J8          TCGA-D3-A2J9 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A2JD          TCGA-D3-A2JF          TCGA-D3-A2JK 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A3C6          TCGA-D3-A3CC          TCGA-D3-A3CE 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D3-A3CF          TCGA-D3-A3MO          TCGA-D3-A3MV 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D9-A148          TCGA-D9-A149          TCGA-D9-A1JW 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-D9-A1JX          TCGA-DA-A1HV          TCGA-DA-A1HW 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A1HY          TCGA-DA-A1I0          TCGA-DA-A1I1 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A1I2          TCGA-DA-A1I4          TCGA-DA-A1I5 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A1I7          TCGA-DA-A1I8          TCGA-DA-A1IA 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A1IB          TCGA-DA-A1IC          TCGA-DA-A3F2 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-DA-A3F3          TCGA-DA-A3F5          TCGA-DA-A3F8 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A17X          TCGA-EE-A17Z          TCGA-EE-A181 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A182          TCGA-EE-A183          TCGA-EE-A185 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A20B          TCGA-EE-A20F          TCGA-EE-A20H 
"ANKRD20A4 WILD-TYPE"   "ANKRD20A4 MUTATED" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A29A          TCGA-EE-A29C          TCGA-EE-A29D 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A29E          TCGA-EE-A29H          TCGA-EE-A29L 
  "ANKRD20A4 MUTATED" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A29M          TCGA-EE-A29N          TCGA-EE-A29P 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A29Q          TCGA-EE-A29R          TCGA-EE-A29S 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A29T          TCGA-EE-A29V          TCGA-EE-A29X 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2A0          TCGA-EE-A2A1          TCGA-EE-A2A2 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2A5          TCGA-EE-A2A6          TCGA-EE-A2GB 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2GC          TCGA-EE-A2GD          TCGA-EE-A2GE 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2GH          TCGA-EE-A2GI          TCGA-EE-A2GJ 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2GK          TCGA-EE-A2GL          TCGA-EE-A2GM 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2GN          TCGA-EE-A2GO          TCGA-EE-A2GP 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2GR          TCGA-EE-A2GS          TCGA-EE-A2GT 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2GU          TCGA-EE-A2M5          TCGA-EE-A2M6 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2M7          TCGA-EE-A2M8          TCGA-EE-A2MC 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2MD          TCGA-EE-A2ME          TCGA-EE-A2MG 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2MH          TCGA-EE-A2MI          TCGA-EE-A2MJ 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE"   "ANKRD20A4 MUTATED" 
         TCGA-EE-A2MK          TCGA-EE-A2ML          TCGA-EE-A2MM 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2MN          TCGA-EE-A2MP          TCGA-EE-A2MQ 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2MR          TCGA-EE-A2MS          TCGA-EE-A2MT 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A2MU          TCGA-EE-A3AA          TCGA-EE-A3AB 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A3AC          TCGA-EE-A3AD          TCGA-EE-A3AE 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-EE-A3AF          TCGA-EE-A3AG          TCGA-EE-A3AH 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-ER-A19D          TCGA-ER-A19F          TCGA-ER-A19J 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-ER-A19L          TCGA-ER-A19N          TCGA-ER-A1A1 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-ER-A3ET          TCGA-FS-A1YW          TCGA-FS-A1YX 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-FS-A1YY          TCGA-FS-A1Z0          TCGA-FS-A1Z3 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-FS-A1Z4          TCGA-FS-A1Z7          TCGA-FS-A1ZA 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-FS-A1ZB          TCGA-FS-A1ZC          TCGA-FS-A1ZD 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-FS-A1ZE          TCGA-FS-A1ZF          TCGA-FS-A1ZG 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-FS-A1ZH          TCGA-FS-A1ZJ          TCGA-FS-A1ZK 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-FS-A1ZM          TCGA-FS-A1ZP          TCGA-FS-A1ZQ 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-FS-A1ZR          TCGA-FS-A1ZS          TCGA-FS-A1ZT 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-FS-A1ZU          TCGA-FS-A1ZW          TCGA-FS-A1ZY 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-FS-A1ZZ          TCGA-FW-A3I3          TCGA-GN-A261 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-GN-A262          TCGA-GN-A264          TCGA-GN-A265 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-GN-A266          TCGA-GN-A267          TCGA-GN-A268 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
         TCGA-GN-A26A          TCGA-GN-A26D 
"ANKRD20A4 WILD-TYPE" "ANKRD20A4 WILD-TYPE" 
[1] "hr=" "1.9"
D99V2, continuous
                     vv
clus                  DISTANT METASTASIS PRIMARY TUMOR
  ANKRD20A4 MUTATED                    0             0
  ANKRD20A4 WILD-TYPE                 22             1
                     vv
clus                  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  ANKRD20A4 MUTATED                                                                                          0
  ANKRD20A4 WILD-TYPE                                                                                       32
                     vv
clus                  REGIONAL LYMPH NODE
  ANKRD20A4 MUTATED                     3
  ANKRD20A4 WILD-TYPE                 101
D99V3, multiclass
                                                                                          clus
vv                                                                                         ANKRD20A4 MUTATED
  DISTANT METASTASIS                                                                                       0
  PRIMARY TUMOR                                                                                            0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                 0
  REGIONAL LYMPH NODE                                                                                      3
                                                                                          clus
vv                                                                                         ANKRD20A4 WILD-TYPE
  DISTANT METASTASIS                                                                                        22
  PRIMARY TUMOR                                                                                              1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                  32
  REGIONAL LYMPH NODE                                                                                      101
D99V4, binary
                     cls
clus                   0  1
  ANKRD20A4 MUTATED    0  3
  ANKRD20A4 WILD-TYPE 60 96
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  ANKRD20A4 MUTATED      0    3
  ANKRD20A4 WILD-TYPE   60   96
        clus
vv       ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE
  FEMALE                 0                  60
  MALE                   3                  96
                     vv
clus                   M0  M1 M1A M1B M1C
  ANKRD20A4 MUTATED     3   0   0   0   0
  ANKRD20A4 WILD-TYPE 135   2   1   2   2
D99V5, multiclass
                     vv
clus                  N0 N1 N1A N1B N2A N2B N2C N3 NX
  ANKRD20A4 MUTATED    2  0   0   1   0   0   0  0  0
  ANKRD20A4 WILD-TYPE 85  2   7  14   4  10   5 14  2
D99V6, multiclass
D99V7, continuous
                     vv
clus                  I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  ANKRD20A4 MUTATED             0       0        0        0        2         0
  ANKRD20A4 WILD-TYPE           3      17       10       12       16         7
                     vv
clus                  STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  ANKRD20A4 MUTATED           0         0         0          0          1
  ANKRD20A4 WILD-TYPE         9         7         7          6         16
                     vv
clus                  STAGE IIIC STAGE IV
  ANKRD20A4 MUTATED            0        0
  ANKRD20A4 WILD-TYPE         21        5
D99V8, multiclass

Clustering(100) Variable = OR5J2 MUTATION ANALYSIS
D100V1, survival
                 sevent
clus2              0  1
  OR5J2 MUTATED    6  4
  OR5J2 WILD-TYPE 67 81
  OR5J2 MUTATED OR5J2 WILD-TYPE 
             10             148 
  OR5J2 MUTATED OR5J2 WILD-TYPE 
              4              81 
$`OR5J2 MUTATED`
TCGA-DA-A3F3 TCGA-EE-A20F TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A2GO TCGA-EE-A2MP 
       10.49        78.87        13.97        32.19       101.95       248.61 
TCGA-EE-A2MT TCGA-EE-A3AE TCGA-EE-A3AF TCGA-FS-A1Z3 
       41.59        26.73        13.81        20.91 

$`OR5J2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW 
      148.31        49.74         2.70         6.38        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       61.18        53.92        65.92        23.44        68.09        28.60 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 
      215.44        15.68        29.82         8.65        33.73        14.70 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
       26.86         4.93       109.64       168.26        63.32        47.84 
TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       39.62         2.56        44.35        18.58        56.42        37.35 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
       14.47        55.89       345.96        25.87        17.92        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC 
       78.94        24.43        39.25        58.75        47.54        43.23 
TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK 
      314.53       135.91       182.01        22.55        89.33        54.71 
TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS 
       55.00        75.48        90.94        13.87        14.30        55.59 
TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 
       19.56        67.13        21.67       129.24        28.80        19.76 
TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI 
       61.51        47.28       103.27       103.17        16.96       204.62 
TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MQ 
       96.23       144.76       203.01       167.87        47.54        43.23 
TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC 
      103.56       136.44        53.26         4.24       122.73        25.84 
TCGA-EE-A3AD TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
        3.68        23.47       138.77        12.59        26.37         6.41 
TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX 
      131.08        44.05        79.99        80.32       216.92        48.59 
TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB 
      228.59       202.62        28.08         7.76        27.68        48.85 
TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH 
      357.37        53.52        40.27        15.45         9.70        32.71 
TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR 
       47.38        23.93       101.26        74.73       133.55        11.41 
TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ 
      148.77        53.16        26.56        49.48        27.06        27.02 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        0.20        76.41       120.46       117.93        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       64.41        62.76        32.48        39.58 

  OR5J2 MUTATED OR5J2 WILD-TYPE 
          10.49            0.20 
  OR5J2 MUTATED OR5J2 WILD-TYPE 
         248.61          357.37 
  OR5J2 MUTATED OR5J2 WILD-TYPE 
         29.460          48.215 
[1] "10.5 - 248.6 (29.5)" "0.2 - 357.4 (48.2)" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
  "OR5J2 MUTATED" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE"   "OR5J2 MUTATED" "OR5J2 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE"   "OR5J2 MUTATED" "OR5J2 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
  "OR5J2 MUTATED" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE"   "OR5J2 MUTATED" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
  "OR5J2 MUTATED" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
  "OR5J2 MUTATED" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE"   "OR5J2 MUTATED"   "OR5J2 MUTATED" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"OR5J2 WILD-TYPE"   "OR5J2 MUTATED" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
  "OR5J2 MUTATED" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE"   "OR5J2 MUTATED" "OR5J2 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE"   "OR5J2 MUTATED" "OR5J2 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
  "OR5J2 MUTATED" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE"   "OR5J2 MUTATED" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
  "OR5J2 MUTATED" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
  "OR5J2 MUTATED" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE"   "OR5J2 MUTATED"   "OR5J2 MUTATED" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"OR5J2 WILD-TYPE"   "OR5J2 MUTATED" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
  "OR5J2 MUTATED" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE"   "OR5J2 MUTATED" "OR5J2 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE"   "OR5J2 MUTATED" "OR5J2 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
  "OR5J2 MUTATED" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE"   "OR5J2 MUTATED" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
  "OR5J2 MUTATED" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
  "OR5J2 MUTATED" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE"   "OR5J2 MUTATED"   "OR5J2 MUTATED" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"OR5J2 WILD-TYPE"   "OR5J2 MUTATED" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"OR5J2 WILD-TYPE" "OR5J2 WILD-TYPE" 
[1] "hr=" "1.2"
D100V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  OR5J2 MUTATED                    1             0
  OR5J2 WILD-TYPE                 21             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  OR5J2 MUTATED                                                                                          1
  OR5J2 WILD-TYPE                                                                                       31
                 vv
clus              REGIONAL LYMPH NODE
  OR5J2 MUTATED                     8
  OR5J2 WILD-TYPE                  96
D100V3, multiclass
                                                                                          clus
vv                                                                                         OR5J2 MUTATED
  DISTANT METASTASIS                                                                                   1
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             1
  REGIONAL LYMPH NODE                                                                                  8
                                                                                          clus
vv                                                                                         OR5J2 WILD-TYPE
  DISTANT METASTASIS                                                                                    21
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              31
  REGIONAL LYMPH NODE                                                                                   96
D100V4, binary
                 cls
clus               0  1
  OR5J2 MUTATED    6  4
  OR5J2 WILD-TYPE 54 95
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5J2 MUTATED      6    4
  OR5J2 WILD-TYPE   54   95
        clus
vv       OR5J2 MUTATED OR5J2 WILD-TYPE
  FEMALE             6              54
  MALE               4              95
                 vv
clus               M0  M1 M1A M1B M1C
  OR5J2 MUTATED     8   0   0   0   0
  OR5J2 WILD-TYPE 130   2   1   2   2
D100V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2A N2B N2C N3 NX
  OR5J2 MUTATED    6  0   0   1   0   1   0  0  0
  OR5J2 WILD-TYPE 81  2   7  14   4   9   5 14  2
D100V6, multiclass
D100V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  OR5J2 MUTATED             0       1        2        1        2         0
  OR5J2 WILD-TYPE           3      16        8       11       16         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  OR5J2 MUTATED           0         0         0          0          1
  OR5J2 WILD-TYPE         9         7         7          6         16
                 vv
clus              STAGE IIIC STAGE IV
  OR5J2 MUTATED            1        0
  OR5J2 WILD-TYPE         20        5
D100V8, multiclass

Clustering(101) Variable = CLEC14A MUTATION ANALYSIS
D101V1, survival
                   sevent
clus2                0  1
  CLEC14A MUTATED    9  5
  CLEC14A WILD-TYPE 64 80
  CLEC14A MUTATED CLEC14A WILD-TYPE 
               14               144 
  CLEC14A MUTATED CLEC14A WILD-TYPE 
                5                80 
$`CLEC14A MUTATED`
TCGA-DA-A3F8 TCGA-EE-A29A TCGA-EE-A2A2 TCGA-EE-A2GS TCGA-EE-A2MJ TCGA-EE-A2MM 
       15.68        63.32        24.43        55.59        96.23       167.87 
TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A3AC TCGA-FS-A1ZM TCGA-FS-A1ZQ TCGA-FS-A1ZW 
      103.56       136.44        25.84       101.26       133.55        49.48 
TCGA-GN-A262 TCGA-GN-A266 
      120.46        10.09 

$`CLEC14A WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW 
      148.31        49.74         2.70         6.38        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       61.18        53.92        65.92        23.44        68.09        28.60 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 
       10.49       215.44        29.82         8.65        33.73        14.70 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29C 
       26.86         4.93       109.64        78.87       168.26        47.84 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N 
       13.97        39.62        32.19         2.56        44.35        18.58 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V 
       56.42        37.35        14.47        55.89       345.96        25.87 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB 
       17.92        46.82        78.94        39.25        58.75        47.54 
TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ 
       43.23       314.53       135.91       182.01        22.55        89.33 
TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP 
       54.71        55.00        75.48        90.94       101.95        13.87 
TCGA-EE-A2GR TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 
       14.30        19.56        67.13        21.67       129.24        28.80 
TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH 
       19.76        61.51        47.28       103.27       103.17        16.96 
TCGA-EE-A2MI TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ 
      204.62       144.76       203.01        47.54       248.61        43.23 
TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AD TCGA-EE-A3AE 
       41.59        53.26         4.24       122.73         3.68        26.73 
TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       13.81        23.47       138.77        12.59        26.37         6.41 
TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX 
      131.08        44.05        79.99        80.32       216.92        48.59 
TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA 
      228.59       202.62        20.91        28.08         7.76        27.68 
TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG 
       48.85       357.37        53.52        40.27        15.45         9.70 
TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS 
       32.71        47.38        23.93        74.73        11.41       148.77 
TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 
       53.16        26.56        27.06        27.02         0.20        76.41 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
      117.93        84.72        64.41        62.76        32.48        39.58 

  CLEC14A MUTATED CLEC14A WILD-TYPE 
            10.09              0.20 
  CLEC14A MUTATED CLEC14A WILD-TYPE 
           167.87            357.37 
  CLEC14A MUTATED CLEC14A WILD-TYPE 
           79.775            47.050 
[1] "10.1 - 167.9 (79.8)" "0.2 - 357.4 (47.0)" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE"   "CLEC14A MUTATED" "CLEC14A WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
  "CLEC14A MUTATED" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"CLEC14A WILD-TYPE"   "CLEC14A MUTATED" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE"   "CLEC14A MUTATED" "CLEC14A WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE"   "CLEC14A MUTATED" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE"   "CLEC14A MUTATED" "CLEC14A WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE"   "CLEC14A MUTATED"   "CLEC14A MUTATED" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
  "CLEC14A MUTATED" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE"   "CLEC14A MUTATED" "CLEC14A WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
  "CLEC14A MUTATED" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"CLEC14A WILD-TYPE"   "CLEC14A MUTATED" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE"   "CLEC14A MUTATED" "CLEC14A WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"CLEC14A WILD-TYPE"   "CLEC14A MUTATED" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE"   "CLEC14A MUTATED" "CLEC14A WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
  "CLEC14A MUTATED" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"CLEC14A WILD-TYPE"   "CLEC14A MUTATED" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE"   "CLEC14A MUTATED" "CLEC14A WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE"   "CLEC14A MUTATED" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE"   "CLEC14A MUTATED" "CLEC14A WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE"   "CLEC14A MUTATED"   "CLEC14A MUTATED" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
  "CLEC14A MUTATED" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE"   "CLEC14A MUTATED" "CLEC14A WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
  "CLEC14A MUTATED" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"CLEC14A WILD-TYPE"   "CLEC14A MUTATED" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE"   "CLEC14A MUTATED" "CLEC14A WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"CLEC14A WILD-TYPE"   "CLEC14A MUTATED" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE"   "CLEC14A MUTATED" "CLEC14A WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
  "CLEC14A MUTATED" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"CLEC14A WILD-TYPE"   "CLEC14A MUTATED" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE"   "CLEC14A MUTATED" "CLEC14A WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE"   "CLEC14A MUTATED" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE"   "CLEC14A MUTATED" "CLEC14A WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE"   "CLEC14A MUTATED"   "CLEC14A MUTATED" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
  "CLEC14A MUTATED" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE"   "CLEC14A MUTATED" "CLEC14A WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
  "CLEC14A MUTATED" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"CLEC14A WILD-TYPE"   "CLEC14A MUTATED" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE"   "CLEC14A MUTATED" "CLEC14A WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"CLEC14A WILD-TYPE"   "CLEC14A MUTATED" "CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"CLEC14A WILD-TYPE" "CLEC14A WILD-TYPE" 
[1] "hr=" "1.8"
D101V2, continuous
                   vv
clus                DISTANT METASTASIS PRIMARY TUMOR
  CLEC14A MUTATED                    2             0
  CLEC14A WILD-TYPE                 20             1
                   vv
clus                REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  CLEC14A MUTATED                                                                                          3
  CLEC14A WILD-TYPE                                                                                       29
                   vv
clus                REGIONAL LYMPH NODE
  CLEC14A MUTATED                     9
  CLEC14A WILD-TYPE                  95
D101V3, multiclass
                                                                                          clus
vv                                                                                         CLEC14A MUTATED
  DISTANT METASTASIS                                                                                     2
  PRIMARY TUMOR                                                                                          0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               3
  REGIONAL LYMPH NODE                                                                                    9
                                                                                          clus
vv                                                                                         CLEC14A WILD-TYPE
  DISTANT METASTASIS                                                                                      20
  PRIMARY TUMOR                                                                                            1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                29
  REGIONAL LYMPH NODE                                                                                     95
D101V4, binary
                   cls
clus                 0  1
  CLEC14A MUTATED    3 11
  CLEC14A WILD-TYPE 57 88
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CLEC14A MUTATED      3   11
  CLEC14A WILD-TYPE   57   88
        clus
vv       CLEC14A MUTATED CLEC14A WILD-TYPE
  FEMALE               3                57
  MALE                11                88
                   vv
clus                 M0  M1 M1A M1B M1C
  CLEC14A MUTATED    11   0   0   0   0
  CLEC14A WILD-TYPE 127   2   1   2   2
D101V5, multiclass
                   vv
clus                N0 N1 N1A N1B N2A N2B N2C N3 NX
  CLEC14A MUTATED    6  0   2   1   0   1   1  0  0
  CLEC14A WILD-TYPE 81  2   5  14   4   9   4 14  2
D101V6, multiclass
D101V7, continuous
                   vv
clus                I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  CLEC14A MUTATED             1       2        0        1        2         0
  CLEC14A WILD-TYPE           2      15       10       11       16         7
                   vv
clus                STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  CLEC14A MUTATED           0         0         1          1          3
  CLEC14A WILD-TYPE         9         7         6          5         14
                   vv
clus                STAGE IIIC STAGE IV
  CLEC14A MUTATED            0        0
  CLEC14A WILD-TYPE         21        5
D101V8, multiclass

Clustering(102) Variable = FAM19A1 MUTATION ANALYSIS
D102V1, survival
                   sevent
clus2                0  1
  FAM19A1 MUTATED    2  5
  FAM19A1 WILD-TYPE 71 80
  FAM19A1 MUTATED FAM19A1 WILD-TYPE 
                7               151 
  FAM19A1 MUTATED FAM19A1 WILD-TYPE 
                5                80 
$`FAM19A1 MUTATED`
TCGA-DA-A1HV TCGA-EE-A182 TCGA-EE-A29D TCGA-EE-A2GL TCGA-EE-A2MG TCGA-EE-A2MI 
       48.89        14.70        13.97        55.00       103.17       204.62 
TCGA-GN-A266 
       10.09 

$`FAM19A1 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HW TCGA-DA-A1HY 
      148.31        49.74         2.70         6.38        36.03       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
       20.38       194.83       176.55        35.93       107.34        61.18 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       53.92        65.92        23.44        68.09        28.60        10.49 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 
      215.44        15.68        29.82         8.65        33.73        26.86 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.93       109.64        78.87       168.26        63.32        47.84 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
       39.62        32.19         2.56        44.35        18.58        56.42 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X 
       37.35        14.47        55.89       345.96        25.87        17.92 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB 
       46.82        78.94        24.43        39.25        58.75        47.54 
TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ 
       43.23       314.53       135.91       182.01        22.55        89.33 
TCGA-EE-A2GK TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR 
       54.71        75.48        90.94       101.95        13.87        14.30 
TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 
       55.59        19.56        67.13        21.67       129.24        28.80 
TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MH TCGA-EE-A2MJ 
       19.76        61.51        47.28       103.27        16.96        96.23 
TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ 
      144.76       203.01       167.87        47.54       248.61        43.23 
TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB 
      103.56       136.44        41.59        53.26         4.24       122.73 
TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH 
       25.84         3.68        26.73        13.81        23.47       138.77 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 
       12.59        26.37         6.41       131.08        44.05        79.99 
TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 
       80.32       216.92        48.59       228.59       202.62        20.91 
TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD 
       28.08         7.76        27.68        48.85       357.37        53.52 
TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK 
       40.27        15.45         9.70        32.71        47.38        23.93 
TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT 
      101.26        74.73       133.55        11.41       148.77        53.16 
TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 
       26.56        49.48        27.06        27.02         0.20        76.41 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
      120.46       117.93        84.72        64.41        62.76        32.48 
TCGA-GN-A26D 
       39.58 

  FAM19A1 MUTATED FAM19A1 WILD-TYPE 
            10.09              0.20 
  FAM19A1 MUTATED FAM19A1 WILD-TYPE 
           204.62            357.37 
  FAM19A1 MUTATED FAM19A1 WILD-TYPE 
            48.89             47.54 
[1] "10.1 - 204.6 (48.9)" "0.2 - 357.4 (47.5)" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE"   "FAM19A1 MUTATED" "FAM19A1 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE"   "FAM19A1 MUTATED" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE"   "FAM19A1 MUTATED" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
  "FAM19A1 MUTATED" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
  "FAM19A1 MUTATED" "FAM19A1 WILD-TYPE"   "FAM19A1 MUTATED" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"FAM19A1 WILD-TYPE"   "FAM19A1 MUTATED" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE"   "FAM19A1 MUTATED" "FAM19A1 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE"   "FAM19A1 MUTATED" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE"   "FAM19A1 MUTATED" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
  "FAM19A1 MUTATED" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
  "FAM19A1 MUTATED" "FAM19A1 WILD-TYPE"   "FAM19A1 MUTATED" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"FAM19A1 WILD-TYPE"   "FAM19A1 MUTATED" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE"   "FAM19A1 MUTATED" "FAM19A1 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE"   "FAM19A1 MUTATED" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE"   "FAM19A1 MUTATED" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
  "FAM19A1 MUTATED" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
  "FAM19A1 MUTATED" "FAM19A1 WILD-TYPE"   "FAM19A1 MUTATED" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"FAM19A1 WILD-TYPE"   "FAM19A1 MUTATED" "FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"FAM19A1 WILD-TYPE" "FAM19A1 WILD-TYPE" 
[1] "hr=" "1.4"
D102V2, continuous
                   vv
clus                DISTANT METASTASIS PRIMARY TUMOR
  FAM19A1 MUTATED                    1             0
  FAM19A1 WILD-TYPE                 21             1
                   vv
clus                REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  FAM19A1 MUTATED                                                                                          1
  FAM19A1 WILD-TYPE                                                                                       31
                   vv
clus                REGIONAL LYMPH NODE
  FAM19A1 MUTATED                     5
  FAM19A1 WILD-TYPE                  99
D102V3, multiclass
                                                                                          clus
vv                                                                                         FAM19A1 MUTATED
  DISTANT METASTASIS                                                                                     1
  PRIMARY TUMOR                                                                                          0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               1
  REGIONAL LYMPH NODE                                                                                    5
                                                                                          clus
vv                                                                                         FAM19A1 WILD-TYPE
  DISTANT METASTASIS                                                                                      21
  PRIMARY TUMOR                                                                                            1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                31
  REGIONAL LYMPH NODE                                                                                     99
D102V4, binary
                   cls
clus                 0  1
  FAM19A1 MUTATED    3  4
  FAM19A1 WILD-TYPE 57 95
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM19A1 MUTATED      3    4
  FAM19A1 WILD-TYPE   57   95
        clus
vv       FAM19A1 MUTATED FAM19A1 WILD-TYPE
  FEMALE               3                57
  MALE                 4                95
                   vv
clus                 M0  M1 M1A M1B M1C
  FAM19A1 MUTATED     6   0   0   0   0
  FAM19A1 WILD-TYPE 132   2   1   2   2
D102V5, multiclass
                   vv
clus                N0 N1 N1A N1B N2A N2B N2C N3 NX
  FAM19A1 MUTATED    3  0   0   2   0   1   0  0  0
  FAM19A1 WILD-TYPE 84  2   7  13   4   9   5 14  2
D102V6, multiclass
D102V7, continuous
                   vv
clus                I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  FAM19A1 MUTATED             0       1        0        0        0         1
  FAM19A1 WILD-TYPE           3      16       10       12       18         6
                   vv
clus                STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  FAM19A1 MUTATED           1         0         0          0          1
  FAM19A1 WILD-TYPE         8         7         7          6         16
                   vv
clus                STAGE IIIC STAGE IV
  FAM19A1 MUTATED            2        0
  FAM19A1 WILD-TYPE         19        5
D102V8, multiclass

Clustering(103) Variable = GK2 MUTATION ANALYSIS
D103V1, survival
               sevent
clus2            0  1
  GK2 MUTATED   12  8
  GK2 WILD-TYPE 61 77
  GK2 MUTATED GK2 WILD-TYPE 
           20           138 
  GK2 MUTATED GK2 WILD-TYPE 
            8            77 
$`GK2 MUTATED`
TCGA-D3-A2JF TCGA-D3-A3C6 TCGA-DA-A3F8 TCGA-EE-A20F TCGA-EE-A29M TCGA-EE-A2GC 
       48.76        58.03        15.68        78.87        44.35        43.23 
TCGA-EE-A2GH TCGA-EE-A2GO TCGA-EE-A2GR TCGA-EE-A2MI TCGA-EE-A2MS TCGA-EE-A2MU 
      182.01       101.95        14.30       204.62       136.44        53.26 
TCGA-EE-A3AE TCGA-EE-A3AG TCGA-FS-A1YY TCGA-FS-A1ZD TCGA-FS-A1ZZ TCGA-GN-A266 
       26.73        23.47       228.59        53.52        27.02        10.09 
TCGA-GN-A268 TCGA-GN-A26A 
       62.76        32.48 

$`GK2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3CC 
       43.40        65.49        23.77        11.87        12.10        71.24 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 TCGA-D9-A149 
       60.23        24.53         9.30        21.47       148.31        49.74 
TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        2.70         6.38        48.89        36.03       117.17        20.38 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
      194.83       176.55        35.93       107.34        61.18        53.92 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       65.92        23.44        68.09        28.60        10.49       215.44 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       29.82         8.65        33.73        14.70        26.86         4.93 
TCGA-EE-A20B TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
      109.64       168.26        63.32        47.84        13.97        39.62 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
       32.19         2.56        18.58        56.42        37.35        14.47 
TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
       55.89       345.96        25.87        17.92        46.82        78.94 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GD TCGA-EE-A2GE 
       24.43        39.25        58.75        47.54       314.53       135.91 
TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN 
       22.55        89.33        54.71        55.00        75.48        90.94 
TCGA-EE-A2GP TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 
       13.87        55.59        19.56        67.13        21.67       129.24 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG 
       28.80        19.76        61.51        47.28       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN 
       16.96        96.23       144.76       203.01       167.87        47.54 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MT TCGA-EE-A3AA TCGA-EE-A3AB 
      248.61        43.23       103.56        41.59         4.24       122.73 
TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AF TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F 
       25.84         3.68        13.81       138.77        12.59        26.37 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW 
        6.41       131.08        44.05        79.99        80.32       216.92 
TCGA-FS-A1YX TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA 
       48.59       202.62        20.91        28.08         7.76        27.68 
TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH 
       48.85       357.37        40.27        15.45         9.70        32.71 
TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR 
       47.38        23.93       101.26        74.73       133.55        11.41 
TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FW-A3I3 
      148.77        53.16        26.56        49.48        27.06         0.20 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A26D 
       76.41       120.46       117.93        84.72        64.41        39.58 

  GK2 MUTATED GK2 WILD-TYPE 
        10.09          0.20 
  GK2 MUTATED GK2 WILD-TYPE 
       228.59        357.37 
  GK2 MUTATED GK2 WILD-TYPE 
        51.01         47.46 
[1] "10.1 - 228.6 (51.0)" "0.2 - 357.4 (47.5)" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
  "GK2 MUTATED" "GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A148    TCGA-D9-A149 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-D9-A1JW    TCGA-D9-A1JX    TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-DA-A1I0    TCGA-DA-A1I1    TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-DA-A1I7    TCGA-DA-A1I8    TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-DA-A3F2    TCGA-DA-A3F3    TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" 
   TCGA-EE-A17Z    TCGA-EE-A181    TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A20B    TCGA-EE-A20F    TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C 
"GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A29D    TCGA-EE-A29E    TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE"   "GK2 MUTATED" 
   TCGA-EE-A29N    TCGA-EE-A29P    TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A29T    TCGA-EE-A29V    TCGA-EE-A29X    TCGA-EE-A2A0    TCGA-EE-A2A1 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6    TCGA-EE-A2GB    TCGA-EE-A2GC 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE"   "GK2 MUTATED" 
   TCGA-EE-A2GD    TCGA-EE-A2GE    TCGA-EE-A2GH    TCGA-EE-A2GI    TCGA-EE-A2GJ 
"GK2 WILD-TYPE" "GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A2GK    TCGA-EE-A2GL    TCGA-EE-A2GM    TCGA-EE-A2GN    TCGA-EE-A2GO 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE"   "GK2 MUTATED" 
   TCGA-EE-A2GP    TCGA-EE-A2GR    TCGA-EE-A2GS    TCGA-EE-A2GT    TCGA-EE-A2GU 
"GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A2M5    TCGA-EE-A2M6    TCGA-EE-A2M7    TCGA-EE-A2M8    TCGA-EE-A2MC 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A2MD    TCGA-EE-A2ME    TCGA-EE-A2MG    TCGA-EE-A2MH    TCGA-EE-A2MI 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE"   "GK2 MUTATED" 
   TCGA-EE-A2MJ    TCGA-EE-A2MK    TCGA-EE-A2ML    TCGA-EE-A2MM    TCGA-EE-A2MN 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A2MP    TCGA-EE-A2MQ    TCGA-EE-A2MR    TCGA-EE-A2MS    TCGA-EE-A2MT 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" 
   TCGA-EE-A2MU    TCGA-EE-A3AA    TCGA-EE-A3AB    TCGA-EE-A3AC    TCGA-EE-A3AD 
  "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A3AE    TCGA-EE-A3AF    TCGA-EE-A3AG    TCGA-EE-A3AH    TCGA-ER-A19D 
  "GK2 MUTATED" "GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19N    TCGA-ER-A1A1 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-ER-A3ET    TCGA-FS-A1YW    TCGA-FS-A1YX    TCGA-FS-A1YY    TCGA-FS-A1Z0 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" 
   TCGA-FS-A1Z3    TCGA-FS-A1Z4    TCGA-FS-A1Z7    TCGA-FS-A1ZA    TCGA-FS-A1ZB 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-FS-A1ZC    TCGA-FS-A1ZD    TCGA-FS-A1ZE    TCGA-FS-A1ZF    TCGA-FS-A1ZG 
"GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-FS-A1ZH    TCGA-FS-A1ZJ    TCGA-FS-A1ZK    TCGA-FS-A1ZM    TCGA-FS-A1ZP 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-FS-A1ZQ    TCGA-FS-A1ZR    TCGA-FS-A1ZS    TCGA-FS-A1ZT    TCGA-FS-A1ZU 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-FS-A1ZW    TCGA-FS-A1ZY    TCGA-FS-A1ZZ    TCGA-FW-A3I3    TCGA-GN-A261 
"GK2 WILD-TYPE" "GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265    TCGA-GN-A266    TCGA-GN-A267 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" 
   TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
  "GK2 MUTATED"   "GK2 MUTATED" "GK2 WILD-TYPE" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
  "GK2 MUTATED" "GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A148    TCGA-D9-A149 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-D9-A1JW    TCGA-D9-A1JX    TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-DA-A1I0    TCGA-DA-A1I1    TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-DA-A1I7    TCGA-DA-A1I8    TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-DA-A3F2    TCGA-DA-A3F3    TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" 
   TCGA-EE-A17Z    TCGA-EE-A181    TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A20B    TCGA-EE-A20F    TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C 
"GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A29D    TCGA-EE-A29E    TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE"   "GK2 MUTATED" 
   TCGA-EE-A29N    TCGA-EE-A29P    TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A29T    TCGA-EE-A29V    TCGA-EE-A29X    TCGA-EE-A2A0    TCGA-EE-A2A1 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6    TCGA-EE-A2GB    TCGA-EE-A2GC 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE"   "GK2 MUTATED" 
   TCGA-EE-A2GD    TCGA-EE-A2GE    TCGA-EE-A2GH    TCGA-EE-A2GI    TCGA-EE-A2GJ 
"GK2 WILD-TYPE" "GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A2GK    TCGA-EE-A2GL    TCGA-EE-A2GM    TCGA-EE-A2GN    TCGA-EE-A2GO 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE"   "GK2 MUTATED" 
   TCGA-EE-A2GP    TCGA-EE-A2GR    TCGA-EE-A2GS    TCGA-EE-A2GT    TCGA-EE-A2GU 
"GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A2M5    TCGA-EE-A2M6    TCGA-EE-A2M7    TCGA-EE-A2M8    TCGA-EE-A2MC 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A2MD    TCGA-EE-A2ME    TCGA-EE-A2MG    TCGA-EE-A2MH    TCGA-EE-A2MI 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE"   "GK2 MUTATED" 
   TCGA-EE-A2MJ    TCGA-EE-A2MK    TCGA-EE-A2ML    TCGA-EE-A2MM    TCGA-EE-A2MN 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A2MP    TCGA-EE-A2MQ    TCGA-EE-A2MR    TCGA-EE-A2MS    TCGA-EE-A2MT 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" 
   TCGA-EE-A2MU    TCGA-EE-A3AA    TCGA-EE-A3AB    TCGA-EE-A3AC    TCGA-EE-A3AD 
  "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A3AE    TCGA-EE-A3AF    TCGA-EE-A3AG    TCGA-EE-A3AH    TCGA-ER-A19D 
  "GK2 MUTATED" "GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19N    TCGA-ER-A1A1 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-ER-A3ET    TCGA-FS-A1YW    TCGA-FS-A1YX    TCGA-FS-A1YY    TCGA-FS-A1Z0 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" 
   TCGA-FS-A1Z3    TCGA-FS-A1Z4    TCGA-FS-A1Z7    TCGA-FS-A1ZA    TCGA-FS-A1ZB 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-FS-A1ZC    TCGA-FS-A1ZD    TCGA-FS-A1ZE    TCGA-FS-A1ZF    TCGA-FS-A1ZG 
"GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-FS-A1ZH    TCGA-FS-A1ZJ    TCGA-FS-A1ZK    TCGA-FS-A1ZM    TCGA-FS-A1ZP 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-FS-A1ZQ    TCGA-FS-A1ZR    TCGA-FS-A1ZS    TCGA-FS-A1ZT    TCGA-FS-A1ZU 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-FS-A1ZW    TCGA-FS-A1ZY    TCGA-FS-A1ZZ    TCGA-FW-A3I3    TCGA-GN-A261 
"GK2 WILD-TYPE" "GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265    TCGA-GN-A266    TCGA-GN-A267 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" 
   TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
  "GK2 MUTATED"   "GK2 MUTATED" "GK2 WILD-TYPE" 
   TCGA-D3-A1Q1    TCGA-D3-A1Q5    TCGA-D3-A1Q6    TCGA-D3-A1Q7    TCGA-D3-A1Q8 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-D3-A1Q9    TCGA-D3-A2J6    TCGA-D3-A2J8    TCGA-D3-A2J9    TCGA-D3-A2JD 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-D3-A2JF    TCGA-D3-A2JK    TCGA-D3-A3C6    TCGA-D3-A3CC    TCGA-D3-A3CE 
  "GK2 MUTATED" "GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-D3-A3CF    TCGA-D3-A3MO    TCGA-D3-A3MV    TCGA-D9-A148    TCGA-D9-A149 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-D9-A1JW    TCGA-D9-A1JX    TCGA-DA-A1HV    TCGA-DA-A1HW    TCGA-DA-A1HY 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-DA-A1I0    TCGA-DA-A1I1    TCGA-DA-A1I2    TCGA-DA-A1I4    TCGA-DA-A1I5 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-DA-A1I7    TCGA-DA-A1I8    TCGA-DA-A1IA    TCGA-DA-A1IB    TCGA-DA-A1IC 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-DA-A3F2    TCGA-DA-A3F3    TCGA-DA-A3F5    TCGA-DA-A3F8    TCGA-EE-A17X 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" 
   TCGA-EE-A17Z    TCGA-EE-A181    TCGA-EE-A182    TCGA-EE-A183    TCGA-EE-A185 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A20B    TCGA-EE-A20F    TCGA-EE-A20H    TCGA-EE-A29A    TCGA-EE-A29C 
"GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A29D    TCGA-EE-A29E    TCGA-EE-A29H    TCGA-EE-A29L    TCGA-EE-A29M 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE"   "GK2 MUTATED" 
   TCGA-EE-A29N    TCGA-EE-A29P    TCGA-EE-A29Q    TCGA-EE-A29R    TCGA-EE-A29S 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A29T    TCGA-EE-A29V    TCGA-EE-A29X    TCGA-EE-A2A0    TCGA-EE-A2A1 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A2A2    TCGA-EE-A2A5    TCGA-EE-A2A6    TCGA-EE-A2GB    TCGA-EE-A2GC 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE"   "GK2 MUTATED" 
   TCGA-EE-A2GD    TCGA-EE-A2GE    TCGA-EE-A2GH    TCGA-EE-A2GI    TCGA-EE-A2GJ 
"GK2 WILD-TYPE" "GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A2GK    TCGA-EE-A2GL    TCGA-EE-A2GM    TCGA-EE-A2GN    TCGA-EE-A2GO 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE"   "GK2 MUTATED" 
   TCGA-EE-A2GP    TCGA-EE-A2GR    TCGA-EE-A2GS    TCGA-EE-A2GT    TCGA-EE-A2GU 
"GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A2M5    TCGA-EE-A2M6    TCGA-EE-A2M7    TCGA-EE-A2M8    TCGA-EE-A2MC 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A2MD    TCGA-EE-A2ME    TCGA-EE-A2MG    TCGA-EE-A2MH    TCGA-EE-A2MI 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE"   "GK2 MUTATED" 
   TCGA-EE-A2MJ    TCGA-EE-A2MK    TCGA-EE-A2ML    TCGA-EE-A2MM    TCGA-EE-A2MN 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A2MP    TCGA-EE-A2MQ    TCGA-EE-A2MR    TCGA-EE-A2MS    TCGA-EE-A2MT 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" 
   TCGA-EE-A2MU    TCGA-EE-A3AA    TCGA-EE-A3AB    TCGA-EE-A3AC    TCGA-EE-A3AD 
  "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-EE-A3AE    TCGA-EE-A3AF    TCGA-EE-A3AG    TCGA-EE-A3AH    TCGA-ER-A19D 
  "GK2 MUTATED" "GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-ER-A19F    TCGA-ER-A19J    TCGA-ER-A19L    TCGA-ER-A19N    TCGA-ER-A1A1 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-ER-A3ET    TCGA-FS-A1YW    TCGA-FS-A1YX    TCGA-FS-A1YY    TCGA-FS-A1Z0 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" 
   TCGA-FS-A1Z3    TCGA-FS-A1Z4    TCGA-FS-A1Z7    TCGA-FS-A1ZA    TCGA-FS-A1ZB 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-FS-A1ZC    TCGA-FS-A1ZD    TCGA-FS-A1ZE    TCGA-FS-A1ZF    TCGA-FS-A1ZG 
"GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-FS-A1ZH    TCGA-FS-A1ZJ    TCGA-FS-A1ZK    TCGA-FS-A1ZM    TCGA-FS-A1ZP 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-FS-A1ZQ    TCGA-FS-A1ZR    TCGA-FS-A1ZS    TCGA-FS-A1ZT    TCGA-FS-A1ZU 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-FS-A1ZW    TCGA-FS-A1ZY    TCGA-FS-A1ZZ    TCGA-FW-A3I3    TCGA-GN-A261 
"GK2 WILD-TYPE" "GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" "GK2 WILD-TYPE" 
   TCGA-GN-A262    TCGA-GN-A264    TCGA-GN-A265    TCGA-GN-A266    TCGA-GN-A267 
"GK2 WILD-TYPE" "GK2 WILD-TYPE" "GK2 WILD-TYPE"   "GK2 MUTATED" "GK2 WILD-TYPE" 
   TCGA-GN-A268    TCGA-GN-A26A    TCGA-GN-A26D 
  "GK2 MUTATED"   "GK2 MUTATED" "GK2 WILD-TYPE" 
[1] "hr=" "1.5"
D103V2, continuous
               vv
clus            DISTANT METASTASIS PRIMARY TUMOR
  GK2 MUTATED                    3             1
  GK2 WILD-TYPE                 19             0
               vv
clus            REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  GK2 MUTATED                                                                                          6
  GK2 WILD-TYPE                                                                                       26
               vv
clus            REGIONAL LYMPH NODE
  GK2 MUTATED                    10
  GK2 WILD-TYPE                  94
D103V3, multiclass
                                                                                          clus
vv                                                                                         GK2 MUTATED
  DISTANT METASTASIS                                                                                 3
  PRIMARY TUMOR                                                                                      1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)           6
  REGIONAL LYMPH NODE                                                                               10
                                                                                          clus
vv                                                                                         GK2 WILD-TYPE
  DISTANT METASTASIS                                                                                  19
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            26
  REGIONAL LYMPH NODE                                                                                 94
D103V4, binary
               cls
clus             0  1
  GK2 MUTATED    8 12
  GK2 WILD-TYPE 52 87
[1] "tbl2"
               cls
clus            [,1] [,2]
  GK2 MUTATED      8   12
  GK2 WILD-TYPE   52   87
        clus
vv       GK2 MUTATED GK2 WILD-TYPE
  FEMALE           8            52
  MALE            12            87
               vv
clus             M0  M1 M1A M1B M1C
  GK2 MUTATED    18   0   0   0   0
  GK2 WILD-TYPE 120   2   1   2   2
D103V5, multiclass
               vv
clus            N0 N1 N1A N1B N2A N2B N2C N3 NX
  GK2 MUTATED   16  0   1   0   0   1   0  0  0
  GK2 WILD-TYPE 71  2   6  15   4   9   5 14  2
D103V6, multiclass
D103V7, continuous
               vv
clus            I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  GK2 MUTATED             0       1        3        2        4         2
  GK2 WILD-TYPE           3      16        7       10       14         5
               vv
clus            STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  GK2 MUTATED           4         0         0          1          1          0
  GK2 WILD-TYPE         5         7         7          5         16         21
               vv
clus            STAGE IV
  GK2 MUTATED          0
  GK2 WILD-TYPE        5
D103V8, multiclass

Clustering(104) Variable = LONRF2 MUTATION ANALYSIS
D104V1, survival
                  sevent
clus2               0  1
  LONRF2 MUTATED    4  9
  LONRF2 WILD-TYPE 69 76
  LONRF2 MUTATED LONRF2 WILD-TYPE 
              13              145 
  LONRF2 MUTATED LONRF2 WILD-TYPE 
               9               76 
$`LONRF2 MUTATED`
TCGA-D3-A1Q6 TCGA-D3-A2JD TCGA-EE-A29L TCGA-EE-A2M6 TCGA-EE-A2M8 TCGA-EE-A2MD 
       71.80        11.87         2.56       129.24        19.76        47.28 
TCGA-EE-A2MR TCGA-EE-A3AC TCGA-EE-A3AG TCGA-FS-A1Z3 TCGA-FS-A1ZZ TCGA-GN-A266 
      103.56        25.84        23.47        20.91        27.02        10.09 
TCGA-GN-A26A 
       32.48 

$`LONRF2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.57       112.54       121.22        28.08        31.59        43.40 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC 
       65.49        23.77        48.76        12.10        58.03        71.24 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 TCGA-D9-A149 
       60.23        24.53         9.30        21.47       148.31        49.74 
TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        2.70         6.38        48.89        36.03       117.17        20.38 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
      194.83       176.55        35.93       107.34        61.18        53.92 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       65.92        23.44        68.09        28.60        10.49       215.44 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
       15.68        29.82         8.65        33.73        14.70        26.86 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.93       109.64        78.87       168.26        63.32        47.84 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
       13.97        39.62        32.19        44.35        18.58        56.42 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X 
       37.35        14.47        55.89       345.96        25.87        17.92 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB 
       46.82        78.94        24.43        39.25        58.75        47.54 
TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ 
       43.23       314.53       135.91       182.01        22.55        89.33 
TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP 
       54.71        55.00        75.48        90.94       101.95        13.87 
TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M7 
       14.30        55.59        19.56        67.13        21.67        28.80 
TCGA-EE-A2MC TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ 
       61.51       103.27       103.17        16.96       204.62        96.23 
TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ 
      144.76       203.01       167.87        47.54       248.61        43.23 
TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AD 
      136.44        41.59        53.26         4.24       122.73         3.68 
TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       26.73        13.81       138.77        12.59        26.37         6.41 
TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX 
      131.08        44.05        79.99        80.32       216.92        48.59 
TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB 
      228.59       202.62        28.08         7.76        27.68        48.85 
TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH 
      357.37        53.52        40.27        15.45         9.70        32.71 
TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR 
       47.38        23.93       101.26        74.73       133.55        11.41 
TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FW-A3I3 
      148.77        53.16        26.56        49.48        27.06         0.20 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 
       76.41       120.46       117.93        84.72        64.41        62.76 
TCGA-GN-A26D 
       39.58 

  LONRF2 MUTATED LONRF2 WILD-TYPE 
            2.56             0.20 
  LONRF2 MUTATED LONRF2 WILD-TYPE 
          129.24           357.37 
  LONRF2 MUTATED LONRF2 WILD-TYPE 
           25.84            48.76 
[1] "2.6 - 129.2 (25.8)" "0.2 - 357.4 (48.8)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE"   "LONRF2 MUTATED" "LONRF2 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"LONRF2 WILD-TYPE"   "LONRF2 MUTATED" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"LONRF2 WILD-TYPE"   "LONRF2 MUTATED" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE"   "LONRF2 MUTATED" "LONRF2 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
  "LONRF2 MUTATED" "LONRF2 WILD-TYPE"   "LONRF2 MUTATED" "LONRF2 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE"   "LONRF2 MUTATED" "LONRF2 WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
  "LONRF2 MUTATED" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
  "LONRF2 MUTATED" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"LONRF2 WILD-TYPE"   "LONRF2 MUTATED" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE"   "LONRF2 MUTATED" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"LONRF2 WILD-TYPE"   "LONRF2 MUTATED" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
  "LONRF2 MUTATED" "LONRF2 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE"   "LONRF2 MUTATED" "LONRF2 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"LONRF2 WILD-TYPE"   "LONRF2 MUTATED" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"LONRF2 WILD-TYPE"   "LONRF2 MUTATED" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE"   "LONRF2 MUTATED" "LONRF2 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
  "LONRF2 MUTATED" "LONRF2 WILD-TYPE"   "LONRF2 MUTATED" "LONRF2 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE"   "LONRF2 MUTATED" "LONRF2 WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
  "LONRF2 MUTATED" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
  "LONRF2 MUTATED" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"LONRF2 WILD-TYPE"   "LONRF2 MUTATED" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE"   "LONRF2 MUTATED" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"LONRF2 WILD-TYPE"   "LONRF2 MUTATED" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
  "LONRF2 MUTATED" "LONRF2 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE"   "LONRF2 MUTATED" "LONRF2 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"LONRF2 WILD-TYPE"   "LONRF2 MUTATED" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"LONRF2 WILD-TYPE"   "LONRF2 MUTATED" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE"   "LONRF2 MUTATED" "LONRF2 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
  "LONRF2 MUTATED" "LONRF2 WILD-TYPE"   "LONRF2 MUTATED" "LONRF2 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE"   "LONRF2 MUTATED" "LONRF2 WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
  "LONRF2 MUTATED" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
  "LONRF2 MUTATED" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"LONRF2 WILD-TYPE"   "LONRF2 MUTATED" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE"   "LONRF2 MUTATED" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"LONRF2 WILD-TYPE"   "LONRF2 MUTATED" "LONRF2 WILD-TYPE" "LONRF2 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
  "LONRF2 MUTATED" "LONRF2 WILD-TYPE" 
[1] "hr=" "2.2"
D104V2, continuous
                  vv
clus               DISTANT METASTASIS PRIMARY TUMOR
  LONRF2 MUTATED                    2             0
  LONRF2 WILD-TYPE                 20             1
                  vv
clus               REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  LONRF2 MUTATED                                                                                          4
  LONRF2 WILD-TYPE                                                                                       28
                  vv
clus               REGIONAL LYMPH NODE
  LONRF2 MUTATED                     7
  LONRF2 WILD-TYPE                  97
D104V3, multiclass
                                                                                          clus
vv                                                                                         LONRF2 MUTATED
  DISTANT METASTASIS                                                                                    2
  PRIMARY TUMOR                                                                                         0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              4
  REGIONAL LYMPH NODE                                                                                   7
                                                                                          clus
vv                                                                                         LONRF2 WILD-TYPE
  DISTANT METASTASIS                                                                                     20
  PRIMARY TUMOR                                                                                           1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               28
  REGIONAL LYMPH NODE                                                                                    97
D104V4, binary
                  cls
clus                0  1
  LONRF2 MUTATED    4  9
  LONRF2 WILD-TYPE 56 90
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LONRF2 MUTATED      4    9
  LONRF2 WILD-TYPE   56   90
        clus
vv       LONRF2 MUTATED LONRF2 WILD-TYPE
  FEMALE              4               56
  MALE                9               90
                  vv
clus                M0  M1 M1A M1B M1C
  LONRF2 MUTATED     9   0   0   0   0
  LONRF2 WILD-TYPE 129   2   1   2   2
D104V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2A N2B N2C N3 NX
  LONRF2 MUTATED    4  1   1   2   0   0   0  1  0
  LONRF2 WILD-TYPE 83  1   6  13   4  10   5 13  2
D104V6, multiclass
D104V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  LONRF2 MUTATED             0       2        0        0        1         0
  LONRF2 WILD-TYPE           3      15       10       12       17         7
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  LONRF2 MUTATED           1         0         2          1          0
  LONRF2 WILD-TYPE         8         7         5          5         17
                  vv
clus               STAGE IIIC STAGE IV
  LONRF2 MUTATED            2        0
  LONRF2 WILD-TYPE         19        5
D104V8, multiclass

Clustering(105) Variable = HAPLN1 MUTATION ANALYSIS
D105V1, survival
                  sevent
clus2               0  1
  HAPLN1 MUTATED    5  3
  HAPLN1 WILD-TYPE 68 82
  HAPLN1 MUTATED HAPLN1 WILD-TYPE 
               8              150 
  HAPLN1 MUTATED HAPLN1 WILD-TYPE 
               3               82 
$`HAPLN1 MUTATED`
TCGA-D3-A1Q6 TCGA-D9-A148 TCGA-EE-A29S TCGA-EE-A2A6 TCGA-EE-A2GI TCGA-EE-A2MP 
       71.80       148.31        55.89        58.75        22.55       248.61 
TCGA-FS-A1ZZ TCGA-GN-A266 
       27.02        10.09 

$`HAPLN1 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.57       112.54       121.22        28.08        31.59        43.40 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 
       65.49        23.77        11.87        48.76        12.10        58.03 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A149 
       71.24        60.23        24.53         9.30        21.47        49.74 
TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        2.70         6.38        48.89        36.03       117.17        20.38 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
      194.83       176.55        35.93       107.34        61.18        53.92 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       65.92        23.44        68.09        28.60        10.49       215.44 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
       15.68        29.82         8.65        33.73        14.70        26.86 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.93       109.64        78.87       168.26        63.32        47.84 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N 
       13.97        39.62        32.19         2.56        44.35        18.58 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X 
       56.42        37.35        14.47       345.96        25.87        17.92 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2GB TCGA-EE-A2GC 
       46.82        78.94        24.43        39.25        47.54        43.23 
TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL 
      314.53       135.91       182.01        89.33        54.71        55.00 
TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS 
       75.48        90.94       101.95        13.87        14.30        55.59 
TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 
       19.56        67.13        21.67       129.24        28.80        19.76 
TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI 
       61.51        47.28       103.27       103.17        16.96       204.62 
TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MQ 
       96.23       144.76       203.01       167.87        47.54        43.23 
TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB 
      103.56       136.44        41.59        53.26         4.24       122.73 
TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH 
       25.84         3.68        26.73        13.81        23.47       138.77 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 
       12.59        26.37         6.41       131.08        44.05        79.99 
TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 
       80.32       216.92        48.59       228.59       202.62        20.91 
TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD 
       28.08         7.76        27.68        48.85       357.37        53.52 
TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK 
       40.27        15.45         9.70        32.71        47.38        23.93 
TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT 
      101.26        74.73       133.55        11.41       148.77        53.16 
TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 
       26.56        49.48        27.06         0.20        76.41       120.46 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
      117.93        84.72        64.41        62.76        32.48        39.58 

  HAPLN1 MUTATED HAPLN1 WILD-TYPE 
           10.09             0.20 
  HAPLN1 MUTATED HAPLN1 WILD-TYPE 
          248.61           357.37 
  HAPLN1 MUTATED HAPLN1 WILD-TYPE 
           57.32            47.46 
[1] "10.1 - 248.6 (57.3)" "0.2 - 357.4 (47.5)" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE"   "HAPLN1 MUTATED" "HAPLN1 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE"   "HAPLN1 MUTATED" "HAPLN1 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE"   "HAPLN1 MUTATED" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE"   "HAPLN1 MUTATED" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"HAPLN1 WILD-TYPE"   "HAPLN1 MUTATED" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
  "HAPLN1 MUTATED" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE"   "HAPLN1 MUTATED" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"HAPLN1 WILD-TYPE"   "HAPLN1 MUTATED" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE"   "HAPLN1 MUTATED" "HAPLN1 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE"   "HAPLN1 MUTATED" "HAPLN1 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE"   "HAPLN1 MUTATED" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE"   "HAPLN1 MUTATED" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"HAPLN1 WILD-TYPE"   "HAPLN1 MUTATED" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
  "HAPLN1 MUTATED" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE"   "HAPLN1 MUTATED" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"HAPLN1 WILD-TYPE"   "HAPLN1 MUTATED" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE"   "HAPLN1 MUTATED" "HAPLN1 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE"   "HAPLN1 MUTATED" "HAPLN1 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE"   "HAPLN1 MUTATED" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE"   "HAPLN1 MUTATED" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"HAPLN1 WILD-TYPE"   "HAPLN1 MUTATED" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
  "HAPLN1 MUTATED" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE"   "HAPLN1 MUTATED" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"HAPLN1 WILD-TYPE"   "HAPLN1 MUTATED" "HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"HAPLN1 WILD-TYPE" "HAPLN1 WILD-TYPE" 
[1] "hr=" "1.8"
D105V2, continuous
                  vv
clus               DISTANT METASTASIS PRIMARY TUMOR
  HAPLN1 MUTATED                    1             0
  HAPLN1 WILD-TYPE                 21             1
                  vv
clus               REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  HAPLN1 MUTATED                                                                                          2
  HAPLN1 WILD-TYPE                                                                                       30
                  vv
clus               REGIONAL LYMPH NODE
  HAPLN1 MUTATED                     5
  HAPLN1 WILD-TYPE                  99
D105V3, multiclass
                                                                                          clus
vv                                                                                         HAPLN1 MUTATED
  DISTANT METASTASIS                                                                                    1
  PRIMARY TUMOR                                                                                         0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              2
  REGIONAL LYMPH NODE                                                                                   5
                                                                                          clus
vv                                                                                         HAPLN1 WILD-TYPE
  DISTANT METASTASIS                                                                                     21
  PRIMARY TUMOR                                                                                           1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               30
  REGIONAL LYMPH NODE                                                                                    99
D105V4, binary
                  cls
clus                0  1
  HAPLN1 MUTATED    2  6
  HAPLN1 WILD-TYPE 58 93
[1] "tbl2"
                  cls
clus               [,1] [,2]
  HAPLN1 MUTATED      2    6
  HAPLN1 WILD-TYPE   58   93
        clus
vv       HAPLN1 MUTATED HAPLN1 WILD-TYPE
  FEMALE              2               58
  MALE                6               93
                  vv
clus                M0  M1 M1A M1B M1C
  HAPLN1 MUTATED     6   0   0   1   0
  HAPLN1 WILD-TYPE 132   2   1   1   2
D105V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2A N2B N2C N3 NX
  HAPLN1 MUTATED    5  0   0   1   0   0   0  1  0
  HAPLN1 WILD-TYPE 82  2   7  14   4  10   5 13  2
D105V6, multiclass
D105V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  HAPLN1 MUTATED             0       1        2        0        0         1
  HAPLN1 WILD-TYPE           3      16        8       12       18         6
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  HAPLN1 MUTATED           1         0         1          0          0
  HAPLN1 WILD-TYPE         8         7         6          6         17
                  vv
clus               STAGE IIIC STAGE IV
  HAPLN1 MUTATED            0        0
  HAPLN1 WILD-TYPE         21        5
D105V8, multiclass

Clustering(106) Variable = NAP1L4 MUTATION ANALYSIS
D106V1, survival
                  sevent
clus2               0  1
  NAP1L4 MUTATED    2  4
  NAP1L4 WILD-TYPE 71 81
  NAP1L4 MUTATED NAP1L4 WILD-TYPE 
               6              152 
  NAP1L4 MUTATED NAP1L4 WILD-TYPE 
               4               81 
$`NAP1L4 MUTATED`
TCGA-D3-A2JD TCGA-DA-A1IB TCGA-EE-A183 TCGA-EE-A2GO TCGA-EE-A2ME TCGA-EE-A2MQ 
       11.87        23.44        26.86       101.95       103.27        43.23 

$`NAP1L4 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 
       43.40        65.49        23.77        48.76        12.10        58.03 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
       71.24        60.23        24.53         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
       49.74         2.70         6.38        48.89        36.03       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
       20.38       194.83       176.55        35.93       107.34        61.18 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       53.92        65.92        68.09        28.60        10.49       215.44 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A185 
       15.68        29.82         8.65        33.73        14.70         4.93 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
      109.64        78.87       168.26        63.32        47.84        13.97 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
       39.62        32.19         2.56        44.35        18.58        56.42 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X 
       37.35        14.47        55.89       345.96        25.87        17.92 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB 
       46.82        78.94        24.43        39.25        58.75        47.54 
TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ 
       43.23       314.53       135.91       182.01        22.55        89.33 
TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GP TCGA-EE-A2GR 
       54.71        55.00        75.48        90.94        13.87        14.30 
TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 
       55.59        19.56        67.13        21.67       129.24        28.80 
TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI 
       19.76        61.51        47.28       103.17        16.96       204.62 
TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP 
       96.23       144.76       203.01       167.87        47.54       248.61 
TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB 
      103.56       136.44        41.59        53.26         4.24       122.73 
TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH 
       25.84         3.68        26.73        13.81        23.47       138.77 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 
       12.59        26.37         6.41       131.08        44.05        79.99 
TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 
       80.32       216.92        48.59       228.59       202.62        20.91 
TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD 
       28.08         7.76        27.68        48.85       357.37        53.52 
TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK 
       40.27        15.45         9.70        32.71        47.38        23.93 
TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT 
      101.26        74.73       133.55        11.41       148.77        53.16 
TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 
       26.56        49.48        27.06        27.02         0.20        76.41 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 
      120.46       117.93        84.72        10.09        64.41        62.76 
TCGA-GN-A26A TCGA-GN-A26D 
       32.48        39.58 

  NAP1L4 MUTATED NAP1L4 WILD-TYPE 
           11.87             0.20 
  NAP1L4 MUTATED NAP1L4 WILD-TYPE 
          103.27           357.37 
  NAP1L4 MUTATED NAP1L4 WILD-TYPE 
          35.045           47.690 
[1] "11.9 - 103.3 (35.0)" "0.2 - 357.4 (47.7)" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"NAP1L4 WILD-TYPE"   "NAP1L4 MUTATED" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"NAP1L4 WILD-TYPE"   "NAP1L4 MUTATED" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE"   "NAP1L4 MUTATED" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE"   "NAP1L4 MUTATED" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE"   "NAP1L4 MUTATED" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"NAP1L4 WILD-TYPE"   "NAP1L4 MUTATED" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"NAP1L4 WILD-TYPE"   "NAP1L4 MUTATED" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"NAP1L4 WILD-TYPE"   "NAP1L4 MUTATED" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE"   "NAP1L4 MUTATED" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE"   "NAP1L4 MUTATED" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE"   "NAP1L4 MUTATED" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"NAP1L4 WILD-TYPE"   "NAP1L4 MUTATED" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"NAP1L4 WILD-TYPE"   "NAP1L4 MUTATED" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"NAP1L4 WILD-TYPE"   "NAP1L4 MUTATED" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE"   "NAP1L4 MUTATED" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE"   "NAP1L4 MUTATED" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE"   "NAP1L4 MUTATED" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"NAP1L4 WILD-TYPE"   "NAP1L4 MUTATED" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
[1] "hr=" "1.6"
D106V2, continuous
                  vv
clus               DISTANT METASTASIS PRIMARY TUMOR
  NAP1L4 MUTATED                    0             0
  NAP1L4 WILD-TYPE                 22             1
                  vv
clus               REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  NAP1L4 MUTATED                                                                                          1
  NAP1L4 WILD-TYPE                                                                                       31
                  vv
clus               REGIONAL LYMPH NODE
  NAP1L4 MUTATED                     5
  NAP1L4 WILD-TYPE                  99
D106V3, multiclass
                                                                                          clus
vv                                                                                         NAP1L4 MUTATED
  DISTANT METASTASIS                                                                                    0
  PRIMARY TUMOR                                                                                         0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              1
  REGIONAL LYMPH NODE                                                                                   5
                                                                                          clus
vv                                                                                         NAP1L4 WILD-TYPE
  DISTANT METASTASIS                                                                                     22
  PRIMARY TUMOR                                                                                           1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               31
  REGIONAL LYMPH NODE                                                                                    99
D106V4, binary
                  cls
clus                0  1
  NAP1L4 MUTATED    3  3
  NAP1L4 WILD-TYPE 57 96
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NAP1L4 MUTATED      3    3
  NAP1L4 WILD-TYPE   57   96
        clus
vv       NAP1L4 MUTATED NAP1L4 WILD-TYPE
  FEMALE              3               57
  MALE                3               96
                  vv
clus                M0  M1 M1A M1B M1C
  NAP1L4 MUTATED     6   0   0   0   0
  NAP1L4 WILD-TYPE 132   2   1   2   2
D106V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2A N2B N2C N3 NX
  NAP1L4 MUTATED    3  0   0   1   1   1   0  0  0
  NAP1L4 WILD-TYPE 84  2   7  14   3   9   5 14  2
D106V6, multiclass
D106V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  NAP1L4 MUTATED             0       2        0        0        1         0
  NAP1L4 WILD-TYPE           3      15       10       12       17         7
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  NAP1L4 MUTATED           0         0         0          1          0
  NAP1L4 WILD-TYPE         9         7         7          5         17
                  vv
clus               STAGE IIIC STAGE IV
  NAP1L4 MUTATED            2        0
  NAP1L4 WILD-TYPE         19        5
D106V8, multiclass

Clustering(107) Variable = CLCC1 MUTATION ANALYSIS
D107V1, survival
                 sevent
clus2              0  1
  CLCC1 MUTATED    3  6
  CLCC1 WILD-TYPE 70 79
  CLCC1 MUTATED CLCC1 WILD-TYPE 
              9             149 
  CLCC1 MUTATED CLCC1 WILD-TYPE 
              6              79 
$`CLCC1 MUTATED`
TCGA-D3-A2J6 TCGA-D3-A3CE TCGA-EE-A17Z TCGA-EE-A183 TCGA-EE-A2A2 TCGA-EE-A2GK 
       43.40        60.23         8.65        26.86        24.43        54.71 
TCGA-EE-A2MD TCGA-EE-A2MQ TCGA-EE-A3AG 
       47.28        43.23        23.47 

$`CLCC1 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 
       65.49        23.77        11.87        48.76        12.10        58.03 
TCGA-D3-A3CC TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 TCGA-D9-A149 
       71.24        24.53         9.30        21.47       148.31        49.74 
TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        2.70         6.38        48.89        36.03       117.17        20.38 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
      194.83       176.55        35.93       107.34        61.18        53.92 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       65.92        23.44        68.09        28.60        10.49       215.44 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A185 TCGA-EE-A20B 
       15.68        29.82        33.73        14.70         4.93       109.64 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
       78.87       168.26        63.32        47.84        13.97        39.62 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       32.19         2.56        44.35        18.58        56.42        37.35 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
       14.47        55.89       345.96        25.87        17.92        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD 
       78.94        39.25        58.75        47.54        43.23       314.53 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GL TCGA-EE-A2GM 
      135.91       182.01        22.55        89.33        55.00        75.48 
TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT 
       90.94       101.95        13.87        14.30        55.59        19.56 
TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC 
       67.13        21.67       129.24        28.80        19.76        61.51 
TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK 
      103.27       103.17        16.96       204.62        96.23       144.76 
TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MR TCGA-EE-A2MS 
      203.01       167.87        47.54       248.61       103.56       136.44 
TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD 
       41.59        53.26         4.24       122.73        25.84         3.68 
TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J 
       26.73        13.81       138.77        12.59        26.37         6.41 
TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX 
      131.08        44.05        79.99        80.32       216.92        48.59 
TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA 
      228.59       202.62        20.91        28.08         7.76        27.68 
TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG 
       48.85       357.37        53.52        40.27        15.45         9.70 
TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ 
       32.71        47.38        23.93       101.26        74.73       133.55 
TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY 
       11.41       148.77        53.16        26.56        49.48        27.06 
TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
       27.02         0.20        76.41       120.46       117.93        84.72 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       10.09        64.41        62.76        32.48        39.58 

  CLCC1 MUTATED CLCC1 WILD-TYPE 
           8.65            0.20 
  CLCC1 MUTATED CLCC1 WILD-TYPE 
          60.23          357.37 
  CLCC1 MUTATED CLCC1 WILD-TYPE 
          43.23           48.59 
[1] "8.7 - 60.2 (43.2)"  "0.2 - 357.4 (48.6)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE"   "CLCC1 MUTATED" "CLCC1 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE"   "CLCC1 MUTATED" "CLCC1 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
  "CLCC1 MUTATED" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE"   "CLCC1 MUTATED" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"CLCC1 WILD-TYPE"   "CLCC1 MUTATED" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE"   "CLCC1 MUTATED" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE"   "CLCC1 MUTATED" "CLCC1 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"CLCC1 WILD-TYPE"   "CLCC1 MUTATED" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
  "CLCC1 MUTATED" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE"   "CLCC1 MUTATED" "CLCC1 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE"   "CLCC1 MUTATED" "CLCC1 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
  "CLCC1 MUTATED" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE"   "CLCC1 MUTATED" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"CLCC1 WILD-TYPE"   "CLCC1 MUTATED" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE"   "CLCC1 MUTATED" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE"   "CLCC1 MUTATED" "CLCC1 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"CLCC1 WILD-TYPE"   "CLCC1 MUTATED" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
  "CLCC1 MUTATED" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE"   "CLCC1 MUTATED" "CLCC1 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE"   "CLCC1 MUTATED" "CLCC1 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
  "CLCC1 MUTATED" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE"   "CLCC1 MUTATED" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"CLCC1 WILD-TYPE"   "CLCC1 MUTATED" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE"   "CLCC1 MUTATED" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE"   "CLCC1 MUTATED" "CLCC1 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"CLCC1 WILD-TYPE"   "CLCC1 MUTATED" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
  "CLCC1 MUTATED" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
[1] "hr=" "2.1"
D107V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  CLCC1 MUTATED                    0             0
  CLCC1 WILD-TYPE                 22             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  CLCC1 MUTATED                                                                                          1
  CLCC1 WILD-TYPE                                                                                       31
                 vv
clus              REGIONAL LYMPH NODE
  CLCC1 MUTATED                     8
  CLCC1 WILD-TYPE                  96
D107V3, multiclass
                                                                                          clus
vv                                                                                         CLCC1 MUTATED
  DISTANT METASTASIS                                                                                   0
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             1
  REGIONAL LYMPH NODE                                                                                  8
                                                                                          clus
vv                                                                                         CLCC1 WILD-TYPE
  DISTANT METASTASIS                                                                                    22
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              31
  REGIONAL LYMPH NODE                                                                                   96
D107V4, binary
                 cls
clus               0  1
  CLCC1 MUTATED    3  6
  CLCC1 WILD-TYPE 57 93
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CLCC1 MUTATED      3    6
  CLCC1 WILD-TYPE   57   93
        clus
vv       CLCC1 MUTATED CLCC1 WILD-TYPE
  FEMALE             3              57
  MALE               6              93
                 vv
clus               M0  M1 M1A M1B M1C
  CLCC1 MUTATED     8   0   0   0   0
  CLCC1 WILD-TYPE 130   2   1   2   2
D107V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2A N2B N2C N3 NX
  CLCC1 MUTATED    5  0   0   2   1   0   0  0  0
  CLCC1 WILD-TYPE 82  2   7  13   3  10   5 14  2
D107V6, multiclass
D107V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  CLCC1 MUTATED             0       2        0        0        1         0
  CLCC1 WILD-TYPE           3      15       10       12       17         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  CLCC1 MUTATED           2         0         1          1          1
  CLCC1 WILD-TYPE         7         7         6          5         16
                 vv
clus              STAGE IIIC STAGE IV
  CLCC1 MUTATED            0        0
  CLCC1 WILD-TYPE         21        5
D107V8, multiclass

Clustering(108) Variable = OR52J3 MUTATION ANALYSIS
D108V1, survival
                  sevent
clus2               0  1
  OR52J3 MUTATED    3  7
  OR52J3 WILD-TYPE 70 78
  OR52J3 MUTATED OR52J3 WILD-TYPE 
              10              148 
  OR52J3 MUTATED OR52J3 WILD-TYPE 
               7               78 
$`OR52J3 MUTATED`
TCGA-D3-A1Q6 TCGA-EE-A17X TCGA-EE-A181 TCGA-EE-A29E TCGA-EE-A29S TCGA-EE-A2M6 
       71.80        29.82        33.73        39.62        55.89       129.24 
TCGA-ER-A19D TCGA-FS-A1ZZ TCGA-GN-A266 TCGA-GN-A26A 
       12.59        27.02        10.09        32.48 

$`OR52J3 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.57       112.54       121.22        28.08        31.59        43.40 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 
       65.49        23.77        11.87        48.76        12.10        58.03 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
       71.24        60.23        24.53         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
       49.74         2.70         6.38        48.89        36.03       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
       20.38       194.83       176.55        35.93       107.34        61.18 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       53.92        65.92        23.44        68.09        28.60        10.49 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
      215.44        15.68         8.65        14.70        26.86         4.93 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
      109.64        78.87       168.26        63.32        47.84        13.97 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       32.19         2.56        44.35        18.58        56.42        37.35 
TCGA-EE-A29R TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
       14.47       345.96        25.87        17.92        46.82        78.94 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD 
       24.43        39.25        58.75        47.54        43.23       314.53 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL 
      135.91       182.01        22.55        89.33        54.71        55.00 
TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS 
       75.48        90.94       101.95        13.87        14.30        55.59 
TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC 
       19.56        67.13        21.67        28.80        19.76        61.51 
TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ 
       47.28       103.27       103.17        16.96       204.62        96.23 
TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ 
      144.76       203.01       167.87        47.54       248.61        43.23 
TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB 
      103.56       136.44        41.59        53.26         4.24       122.73 
TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH 
       25.84         3.68        26.73        13.81        23.47       138.77 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET 
       26.37         6.41       131.08        44.05        79.99        80.32 
TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 
      216.92        48.59       228.59       202.62        20.91        28.08 
TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE 
        7.76        27.68        48.85       357.37        53.52        40.27 
TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM 
       15.45         9.70        32.71        47.38        23.93       101.26 
TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU 
       74.73       133.55        11.41       148.77        53.16        26.56 
TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
       49.48        27.06         0.20        76.41       120.46       117.93 
TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26D 
       84.72        64.41        62.76        39.58 

  OR52J3 MUTATED OR52J3 WILD-TYPE 
           10.09             0.20 
  OR52J3 MUTATED OR52J3 WILD-TYPE 
          129.24           357.37 
  OR52J3 MUTATED OR52J3 WILD-TYPE 
          33.105           48.215 
[1] "10.1 - 129.2 (33.1)" "0.2 - 357.4 (48.2)" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE"   "OR52J3 MUTATED" "OR52J3 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE"   "OR52J3 MUTATED" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"OR52J3 WILD-TYPE"   "OR52J3 MUTATED" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE"   "OR52J3 MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE"   "OR52J3 MUTATED" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE"   "OR52J3 MUTATED" "OR52J3 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE"   "OR52J3 MUTATED" "OR52J3 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE"   "OR52J3 MUTATED" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"OR52J3 WILD-TYPE"   "OR52J3 MUTATED" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
  "OR52J3 MUTATED" "OR52J3 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE"   "OR52J3 MUTATED" "OR52J3 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE"   "OR52J3 MUTATED" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"OR52J3 WILD-TYPE"   "OR52J3 MUTATED" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE"   "OR52J3 MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE"   "OR52J3 MUTATED" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE"   "OR52J3 MUTATED" "OR52J3 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE"   "OR52J3 MUTATED" "OR52J3 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE"   "OR52J3 MUTATED" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"OR52J3 WILD-TYPE"   "OR52J3 MUTATED" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
  "OR52J3 MUTATED" "OR52J3 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE"   "OR52J3 MUTATED" "OR52J3 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE"   "OR52J3 MUTATED" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"OR52J3 WILD-TYPE"   "OR52J3 MUTATED" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE"   "OR52J3 MUTATED" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE"   "OR52J3 MUTATED" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE"   "OR52J3 MUTATED" "OR52J3 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE"   "OR52J3 MUTATED" "OR52J3 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE"   "OR52J3 MUTATED" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"OR52J3 WILD-TYPE"   "OR52J3 MUTATED" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
  "OR52J3 MUTATED" "OR52J3 WILD-TYPE" 
[1] "hr=" "1.9"
D108V2, continuous
                  vv
clus               DISTANT METASTASIS PRIMARY TUMOR
  OR52J3 MUTATED                    1             0
  OR52J3 WILD-TYPE                 21             1
                  vv
clus               REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  OR52J3 MUTATED                                                                                          4
  OR52J3 WILD-TYPE                                                                                       28
                  vv
clus               REGIONAL LYMPH NODE
  OR52J3 MUTATED                     5
  OR52J3 WILD-TYPE                  99
D108V3, multiclass
                                                                                          clus
vv                                                                                         OR52J3 MUTATED
  DISTANT METASTASIS                                                                                    1
  PRIMARY TUMOR                                                                                         0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              4
  REGIONAL LYMPH NODE                                                                                   5
                                                                                          clus
vv                                                                                         OR52J3 WILD-TYPE
  DISTANT METASTASIS                                                                                     21
  PRIMARY TUMOR                                                                                           1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               28
  REGIONAL LYMPH NODE                                                                                    99
D108V4, binary
                  cls
clus                0  1
  OR52J3 MUTATED    4  6
  OR52J3 WILD-TYPE 56 93
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR52J3 MUTATED      4    6
  OR52J3 WILD-TYPE   56   93
        clus
vv       OR52J3 MUTATED OR52J3 WILD-TYPE
  FEMALE              4               56
  MALE                6               93
                  vv
clus                M0  M1 M1A M1B M1C
  OR52J3 MUTATED     9   0   0   0   0
  OR52J3 WILD-TYPE 129   2   1   2   2
D108V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2A N2B N2C N3 NX
  OR52J3 MUTATED    6  0   1   2   0   0   0  0  0
  OR52J3 WILD-TYPE 81  2   6  13   4  10   5 14  2
D108V6, multiclass
D108V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  OR52J3 MUTATED             0       1        1        1        1         1
  OR52J3 WILD-TYPE           3      16        9       11       17         6
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  OR52J3 MUTATED           1         0         1          1          1
  OR52J3 WILD-TYPE         8         7         6          5         16
                  vv
clus               STAGE IIIC STAGE IV
  OR52J3 MUTATED            0        0
  OR52J3 WILD-TYPE         21        5
D108V8, multiclass

Clustering(109) Variable = TMCO5A MUTATION ANALYSIS
D109V1, survival
                  sevent
clus2               0  1
  TMCO5A MUTATED    4  2
  TMCO5A WILD-TYPE 69 83
  TMCO5A MUTATED TMCO5A WILD-TYPE 
               6              152 
  TMCO5A MUTATED TMCO5A WILD-TYPE 
               2               83 
$`TMCO5A MUTATED`
TCGA-EE-A2GC TCGA-EE-A2GH TCGA-EE-A2M5 TCGA-EE-A2MP TCGA-EE-A3AA TCGA-FS-A1Z7 
       43.23       182.01        21.67       248.61         4.24         7.76 

$`TMCO5A WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW 
      148.31        49.74         2.70         6.38        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       61.18        53.92        65.92        23.44        68.09        28.60 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
       10.49       215.44        15.68        29.82         8.65        33.73 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H 
       14.70        26.86         4.93       109.64        78.87       168.26 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L 
       63.32        47.84        13.97        39.62        32.19         2.56 
TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
       44.35        18.58        56.42        37.35        14.47        55.89 
TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
      345.96        25.87        17.92        46.82        78.94        24.43 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GI 
       39.25        58.75        47.54       314.53       135.91        22.55 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO 
       89.33        54.71        55.00        75.48        90.94       101.95 
TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M6 
       13.87        14.30        55.59        19.56        67.13       129.24 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG 
       28.80        19.76        61.51        47.28       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM 
       16.96       204.62        96.23       144.76       203.01       167.87 
TCGA-EE-A2MN TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU 
       47.54        43.23       103.56       136.44        41.59        53.26 
TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG 
      122.73        25.84         3.68        26.73        13.81        23.47 
TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N 
      138.77        12.59        26.37         6.41       131.08        44.05 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 
       79.99        80.32       216.92        48.59       228.59       202.62 
TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD 
       20.91        28.08        27.68        48.85       357.37        53.52 
TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK 
       40.27        15.45         9.70        32.71        47.38        23.93 
TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT 
      101.26        74.73       133.55        11.41       148.77        53.16 
TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 
       26.56        49.48        27.06        27.02         0.20        76.41 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 
      120.46       117.93        84.72        10.09        64.41        62.76 
TCGA-GN-A26A TCGA-GN-A26D 
       32.48        39.58 

  TMCO5A MUTATED TMCO5A WILD-TYPE 
            4.24             0.20 
  TMCO5A MUTATED TMCO5A WILD-TYPE 
          248.61           357.37 
  TMCO5A MUTATED TMCO5A WILD-TYPE 
           32.45            47.69 
[1] "4.2 - 248.6 (32.5)" "0.2 - 357.4 (47.7)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"TMCO5A WILD-TYPE"   "TMCO5A MUTATED" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
  "TMCO5A MUTATED" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"TMCO5A WILD-TYPE"   "TMCO5A MUTATED" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
  "TMCO5A MUTATED" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE"   "TMCO5A MUTATED" "TMCO5A WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE"   "TMCO5A MUTATED" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"TMCO5A WILD-TYPE"   "TMCO5A MUTATED" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
  "TMCO5A MUTATED" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"TMCO5A WILD-TYPE"   "TMCO5A MUTATED" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
  "TMCO5A MUTATED" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE"   "TMCO5A MUTATED" "TMCO5A WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE"   "TMCO5A MUTATED" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"TMCO5A WILD-TYPE"   "TMCO5A MUTATED" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
  "TMCO5A MUTATED" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"TMCO5A WILD-TYPE"   "TMCO5A MUTATED" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
  "TMCO5A MUTATED" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE"   "TMCO5A MUTATED" "TMCO5A WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE"   "TMCO5A MUTATED" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"TMCO5A WILD-TYPE" "TMCO5A WILD-TYPE" 
[1] "hr=" "1.9"
D109V2, continuous
                  vv
clus               DISTANT METASTASIS PRIMARY TUMOR
  TMCO5A MUTATED                    0             0
  TMCO5A WILD-TYPE                 22             1
                  vv
clus               REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  TMCO5A MUTATED                                                                                          0
  TMCO5A WILD-TYPE                                                                                       32
                  vv
clus               REGIONAL LYMPH NODE
  TMCO5A MUTATED                     6
  TMCO5A WILD-TYPE                  98
D109V3, multiclass
                                                                                          clus
vv                                                                                         TMCO5A MUTATED
  DISTANT METASTASIS                                                                                    0
  PRIMARY TUMOR                                                                                         0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              0
  REGIONAL LYMPH NODE                                                                                   6
                                                                                          clus
vv                                                                                         TMCO5A WILD-TYPE
  DISTANT METASTASIS                                                                                     22
  PRIMARY TUMOR                                                                                           1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               32
  REGIONAL LYMPH NODE                                                                                    98
D109V4, binary
                  cls
clus                0  1
  TMCO5A MUTATED    1  5
  TMCO5A WILD-TYPE 59 94
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TMCO5A MUTATED      1    5
  TMCO5A WILD-TYPE   59   94
        clus
vv       TMCO5A MUTATED TMCO5A WILD-TYPE
  FEMALE              1               59
  MALE                5               94
                  vv
clus                M0  M1 M1A M1B M1C
  TMCO5A MUTATED     5   0   0   0   0
  TMCO5A WILD-TYPE 133   2   1   2   2
D109V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2A N2B N2C N3 NX
  TMCO5A MUTATED    4  0   0   1   0   0   0  0  0
  TMCO5A WILD-TYPE 83  2   7  14   4  10   5 14  2
D109V6, multiclass
D109V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  TMCO5A MUTATED             0       3        0        0        0         0
  TMCO5A WILD-TYPE           3      14       10       12       18         7
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  TMCO5A MUTATED           1         0         0          0          0
  TMCO5A WILD-TYPE         8         7         7          6         17
                  vv
clus               STAGE IIIC STAGE IV
  TMCO5A MUTATED            1        0
  TMCO5A WILD-TYPE         20        5
D109V8, multiclass

Clustering(110) Variable = C4ORF22 MUTATION ANALYSIS
D110V1, survival
                   sevent
clus2                0  1
  C4ORF22 MUTATED    4  4
  C4ORF22 WILD-TYPE 69 81
  C4ORF22 MUTATED C4ORF22 WILD-TYPE 
                8               150 
  C4ORF22 MUTATED C4ORF22 WILD-TYPE 
                4                81 
$`C4ORF22 MUTATED`
TCGA-DA-A3F8 TCGA-EE-A29L TCGA-EE-A29R TCGA-EE-A2A1 TCGA-EE-A2GI TCGA-EE-A2MD 
       15.68         2.56        14.47        78.94        22.55        47.28 
TCGA-FS-A1Z3 TCGA-FS-A1ZC 
       20.91       357.37 

$`C4ORF22 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW 
      148.31        49.74         2.70         6.38        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       61.18        53.92        65.92        23.44        68.09        28.60 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 
       10.49       215.44        29.82         8.65        33.73        14.70 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A 
       26.86         4.93       109.64        78.87       168.26        63.32 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29N 
       47.84        13.97        39.62        32.19        44.35        18.58 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X 
       56.42        37.35        55.89       345.96        25.87        17.92 
TCGA-EE-A2A0 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC 
       46.82        24.43        39.25        58.75        47.54        43.23 
TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL 
      314.53       135.91       182.01        89.33        54.71        55.00 
TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS 
       75.48        90.94       101.95        13.87        14.30        55.59 
TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 
       19.56        67.13        21.67       129.24        28.80        19.76 
TCGA-EE-A2MC TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ 
       61.51       103.27       103.17        16.96       204.62        96.23 
TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ 
      144.76       203.01       167.87        47.54       248.61        43.23 
TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB 
      103.56       136.44        41.59        53.26         4.24       122.73 
TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH 
       25.84         3.68        26.73        13.81        23.47       138.77 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 
       12.59        26.37         6.41       131.08        44.05        79.99 
TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z4 
       80.32       216.92        48.59       228.59       202.62        28.08 
TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF 
        7.76        27.68        48.85        53.52        40.27        15.45 
TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP 
        9.70        32.71        47.38        23.93       101.26        74.73 
TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW 
      133.55        11.41       148.77        53.16        26.56        49.48 
TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
       27.06        27.02         0.20        76.41       120.46       117.93 
TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       84.72        10.09        64.41        62.76        32.48        39.58 

  C4ORF22 MUTATED C4ORF22 WILD-TYPE 
             2.56              0.20 
  C4ORF22 MUTATED C4ORF22 WILD-TYPE 
           357.37            345.96 
  C4ORF22 MUTATED C4ORF22 WILD-TYPE 
           21.730            48.215 
[1] "2.6 - 357.4 (21.7)" "0.2 - 346.0 (48.2)"
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE"   "C4ORF22 MUTATED" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"C4ORF22 WILD-TYPE"   "C4ORF22 MUTATED" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE"   "C4ORF22 MUTATED" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
  "C4ORF22 MUTATED" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"C4ORF22 WILD-TYPE"   "C4ORF22 MUTATED" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE"   "C4ORF22 MUTATED" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"C4ORF22 WILD-TYPE"   "C4ORF22 MUTATED" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE"   "C4ORF22 MUTATED" "C4ORF22 WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE"   "C4ORF22 MUTATED" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"C4ORF22 WILD-TYPE"   "C4ORF22 MUTATED" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE"   "C4ORF22 MUTATED" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
  "C4ORF22 MUTATED" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"C4ORF22 WILD-TYPE"   "C4ORF22 MUTATED" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE"   "C4ORF22 MUTATED" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"C4ORF22 WILD-TYPE"   "C4ORF22 MUTATED" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE"   "C4ORF22 MUTATED" "C4ORF22 WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE"   "C4ORF22 MUTATED" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"C4ORF22 WILD-TYPE"   "C4ORF22 MUTATED" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE"   "C4ORF22 MUTATED" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
  "C4ORF22 MUTATED" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"C4ORF22 WILD-TYPE"   "C4ORF22 MUTATED" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE"   "C4ORF22 MUTATED" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"C4ORF22 WILD-TYPE"   "C4ORF22 MUTATED" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE"   "C4ORF22 MUTATED" "C4ORF22 WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"C4ORF22 WILD-TYPE" "C4ORF22 WILD-TYPE" 
[1] "hr=" "1.2"
D110V2, continuous
                   vv
clus                DISTANT METASTASIS PRIMARY TUMOR
  C4ORF22 MUTATED                    2             0
  C4ORF22 WILD-TYPE                 20             1
                   vv
clus                REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  C4ORF22 MUTATED                                                                                          0
  C4ORF22 WILD-TYPE                                                                                       32
                   vv
clus                REGIONAL LYMPH NODE
  C4ORF22 MUTATED                     6
  C4ORF22 WILD-TYPE                  98
D110V3, multiclass
                                                                                          clus
vv                                                                                         C4ORF22 MUTATED
  DISTANT METASTASIS                                                                                     2
  PRIMARY TUMOR                                                                                          0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               0
  REGIONAL LYMPH NODE                                                                                    6
                                                                                          clus
vv                                                                                         C4ORF22 WILD-TYPE
  DISTANT METASTASIS                                                                                      20
  PRIMARY TUMOR                                                                                            1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                32
  REGIONAL LYMPH NODE                                                                                     98
D110V4, binary
                   cls
clus                 0  1
  C4ORF22 MUTATED    2  6
  C4ORF22 WILD-TYPE 58 93
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C4ORF22 MUTATED      2    6
  C4ORF22 WILD-TYPE   58   93
        clus
vv       C4ORF22 MUTATED C4ORF22 WILD-TYPE
  FEMALE               2                58
  MALE                 6                93
                   vv
clus                 M0  M1 M1A M1B M1C
  C4ORF22 MUTATED     7   0   0   0   0
  C4ORF22 WILD-TYPE 131   2   1   2   2
D110V5, multiclass
                   vv
clus                N0 N1 N1A N1B N2A N2B N2C N3 NX
  C4ORF22 MUTATED    4  0   0   1   0   1   0  1  0
  C4ORF22 WILD-TYPE 83  2   7  14   4   9   5 13  2
D110V6, multiclass
D110V7, continuous
                   vv
clus                I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  C4ORF22 MUTATED             1       0        1        1        1         0
  C4ORF22 WILD-TYPE           2      17        9       11       17         7
                   vv
clus                STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  C4ORF22 MUTATED           0         0         0          0          1
  C4ORF22 WILD-TYPE         9         7         7          6         16
                   vv
clus                STAGE IIIC STAGE IV
  C4ORF22 MUTATED            2        0
  C4ORF22 WILD-TYPE         19        5
D110V8, multiclass

Clustering(111) Variable = MAP2K1 MUTATION ANALYSIS
D111V1, survival
                  sevent
clus2               0  1
  MAP2K1 MUTATED    5  3
  MAP2K1 WILD-TYPE 68 82
  MAP2K1 MUTATED MAP2K1 WILD-TYPE 
               8              150 
  MAP2K1 MUTATED MAP2K1 WILD-TYPE 
               3               82 
$`MAP2K1 MUTATED`
TCGA-D3-A1Q6 TCGA-D3-A1Q8 TCGA-D3-A3MV TCGA-D9-A149 TCGA-EE-A29R TCGA-EE-A29T 
       71.80        28.08        21.47        49.74        14.47       345.96 
TCGA-EE-A2M5 TCGA-EE-A2MU 
       21.67        53.26 

$`MAP2K1 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A2J8 
       16.57       112.54       121.22        31.59        43.40        65.49 
TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 TCGA-D3-A3CC 
       23.77        11.87        48.76        12.10        58.03        71.24 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D9-A148 TCGA-D9-A1JW TCGA-D9-A1JX 
       60.23        24.53         9.30       148.31         2.70         6.38 
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
       48.89        36.03       117.17        20.38       194.83       176.55 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB 
       35.93       107.34        61.18        53.92        65.92        23.44 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X 
       68.09        28.60        10.49       215.44        15.68        29.82 
TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
        8.65        33.73        14.70        26.86         4.93       109.64 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
       78.87       168.26        63.32        47.84        13.97        39.62 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       32.19         2.56        44.35        18.58        56.42        37.35 
TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
       55.89        25.87        17.92        46.82        78.94        24.43 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE 
       39.25        58.75        47.54        43.23       314.53       135.91 
TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM 
      182.01        22.55        89.33        54.71        55.00        75.48 
TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT 
       90.94       101.95        13.87        14.30        55.59        19.56 
TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD 
       67.13       129.24        28.80        19.76        61.51        47.28 
TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK 
      103.27       103.17        16.96       204.62        96.23       144.76 
TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR 
      203.01       167.87        47.54       248.61        43.23       103.56 
TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD 
      136.44        41.59         4.24       122.73        25.84         3.68 
TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F 
       26.73        13.81        23.47       138.77        12.59        26.37 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW 
        6.41       131.08        44.05        79.99        80.32       216.92 
TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 
       48.59       228.59       202.62        20.91        28.08         7.76 
TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF 
       27.68        48.85       357.37        53.52        40.27        15.45 
TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP 
        9.70        32.71        47.38        23.93       101.26        74.73 
TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW 
      133.55        11.41       148.77        53.16        26.56        49.48 
TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
       27.06        27.02         0.20        76.41       120.46       117.93 
TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       84.72        10.09        64.41        62.76        32.48        39.58 

  MAP2K1 MUTATED MAP2K1 WILD-TYPE 
           14.47             0.20 
  MAP2K1 MUTATED MAP2K1 WILD-TYPE 
          345.96           357.37 
  MAP2K1 MUTATED MAP2K1 WILD-TYPE 
           38.91            47.54 
[1] "14.5 - 346.0 (38.9)" "0.2 - 357.4 (47.5)" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE"   "MAP2K1 MUTATED" "MAP2K1 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
  "MAP2K1 MUTATED" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"MAP2K1 WILD-TYPE"   "MAP2K1 MUTATED" "MAP2K1 WILD-TYPE"   "MAP2K1 MUTATED" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE"   "MAP2K1 MUTATED" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
  "MAP2K1 MUTATED" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"MAP2K1 WILD-TYPE"   "MAP2K1 MUTATED" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"MAP2K1 WILD-TYPE"   "MAP2K1 MUTATED" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE"   "MAP2K1 MUTATED" "MAP2K1 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
  "MAP2K1 MUTATED" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"MAP2K1 WILD-TYPE"   "MAP2K1 MUTATED" "MAP2K1 WILD-TYPE"   "MAP2K1 MUTATED" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE"   "MAP2K1 MUTATED" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
  "MAP2K1 MUTATED" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"MAP2K1 WILD-TYPE"   "MAP2K1 MUTATED" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"MAP2K1 WILD-TYPE"   "MAP2K1 MUTATED" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE"   "MAP2K1 MUTATED" "MAP2K1 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
  "MAP2K1 MUTATED" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"MAP2K1 WILD-TYPE"   "MAP2K1 MUTATED" "MAP2K1 WILD-TYPE"   "MAP2K1 MUTATED" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE"   "MAP2K1 MUTATED" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
  "MAP2K1 MUTATED" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"MAP2K1 WILD-TYPE"   "MAP2K1 MUTATED" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"MAP2K1 WILD-TYPE"   "MAP2K1 MUTATED" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
[1] "hr=" "1.5"
D111V2, continuous
                  vv
clus               DISTANT METASTASIS PRIMARY TUMOR
  MAP2K1 MUTATED                    0             0
  MAP2K1 WILD-TYPE                 22             1
                  vv
clus               REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  MAP2K1 MUTATED                                                                                          4
  MAP2K1 WILD-TYPE                                                                                       28
                  vv
clus               REGIONAL LYMPH NODE
  MAP2K1 MUTATED                     4
  MAP2K1 WILD-TYPE                 100
D111V3, multiclass
                                                                                          clus
vv                                                                                         MAP2K1 MUTATED
  DISTANT METASTASIS                                                                                    0
  PRIMARY TUMOR                                                                                         0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              4
  REGIONAL LYMPH NODE                                                                                   4
                                                                                          clus
vv                                                                                         MAP2K1 WILD-TYPE
  DISTANT METASTASIS                                                                                     22
  PRIMARY TUMOR                                                                                           1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               28
  REGIONAL LYMPH NODE                                                                                   100
D111V4, binary
                  cls
clus                0  1
  MAP2K1 MUTATED    4  4
  MAP2K1 WILD-TYPE 56 95
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAP2K1 MUTATED      4    4
  MAP2K1 WILD-TYPE   56   95
        clus
vv       MAP2K1 MUTATED MAP2K1 WILD-TYPE
  FEMALE              4               56
  MALE                4               95
                  vv
clus                M0  M1 M1A M1B M1C
  MAP2K1 MUTATED     7   0   0   1   0
  MAP2K1 WILD-TYPE 131   2   1   1   2
D111V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2A N2B N2C N3 NX
  MAP2K1 MUTATED    2  0   0   3   1   0   0  1  1
  MAP2K1 WILD-TYPE 85  2   7  12   3  10   5 13  1
D111V6, multiclass
D111V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  MAP2K1 MUTATED             0       1        1        0        0         0
  MAP2K1 WILD-TYPE           3      16        9       12       18         7
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  MAP2K1 MUTATED           0         0         1          0          1
  MAP2K1 WILD-TYPE         9         7         6          6         16
                  vv
clus               STAGE IIIC STAGE IV
  MAP2K1 MUTATED            1        1
  MAP2K1 WILD-TYPE         20        4
D111V8, multiclass

Clustering(112) Variable = OR7D2 MUTATION ANALYSIS
D112V1, survival
                 sevent
clus2              0  1
  OR7D2 MUTATED    8  6
  OR7D2 WILD-TYPE 65 79
  OR7D2 MUTATED OR7D2 WILD-TYPE 
             14             144 
  OR7D2 MUTATED OR7D2 WILD-TYPE 
              6              79 
$`OR7D2 MUTATED`
TCGA-D3-A2JF TCGA-DA-A1I4 TCGA-EE-A181 TCGA-EE-A29E TCGA-EE-A29S TCGA-EE-A2GI 
       48.76        35.93        33.73        39.62        55.89        22.55 
TCGA-EE-A2GT TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MR TCGA-EE-A3AE TCGA-EE-A3AG 
       19.56       204.62        96.23       103.56        26.73        23.47 
TCGA-FS-A1ZK TCGA-GN-A268 
       23.93        62.76 

$`OR7D2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       43.40        65.49        23.77        11.87        12.10        58.03 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
       71.24        60.23        24.53         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
       49.74         2.70         6.38        48.89        36.03       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
       20.38       194.83       176.55       107.34        61.18        53.92 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       65.92        23.44        68.09        28.60        10.49       215.44 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 
       15.68        29.82         8.65        14.70        26.86         4.93 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D 
      109.64        78.87       168.26        63.32        47.84        13.97 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       32.19         2.56        44.35        18.58        56.42        37.35 
TCGA-EE-A29R TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
       14.47       345.96        25.87        17.92        46.82        78.94 
TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD 
       24.43        39.25        58.75        47.54        43.23       314.53 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM 
      135.91       182.01        89.33        54.71        55.00        75.48 
TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GU 
       90.94       101.95        13.87        14.30        55.59        67.13 
TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD 
       21.67       129.24        28.80        19.76        61.51        47.28 
TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM 
      103.27       103.17        16.96       144.76       203.01       167.87 
TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU 
       47.54       248.61        43.23       136.44        41.59        53.26 
TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AF TCGA-EE-A3AH 
        4.24       122.73        25.84         3.68        13.81       138.77 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 
       12.59        26.37         6.41       131.08        44.05        79.99 
TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 
       80.32       216.92        48.59       228.59       202.62        20.91 
TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD 
       28.08         7.76        27.68        48.85       357.37        53.52 
TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZM 
       40.27        15.45         9.70        32.71        47.38       101.26 
TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU 
       74.73       133.55        11.41       148.77        53.16        26.56 
TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 
       49.48        27.06        27.02         0.20        76.41       120.46 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A26A TCGA-GN-A26D 
      117.93        84.72        10.09        64.41        32.48        39.58 

  OR7D2 MUTATED OR7D2 WILD-TYPE 
          19.56            0.20 
  OR7D2 MUTATED OR7D2 WILD-TYPE 
         204.62          357.37 
  OR7D2 MUTATED OR7D2 WILD-TYPE 
         37.775          47.690 
[1] "19.6 - 204.6 (37.8)" "0.2 - 357.4 (47.7)" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE"   "OR7D2 MUTATED" "OR7D2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
  "OR7D2 MUTATED" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"OR7D2 WILD-TYPE"   "OR7D2 MUTATED" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE"   "OR7D2 MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE"   "OR7D2 MUTATED" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"OR7D2 WILD-TYPE"   "OR7D2 MUTATED" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE"   "OR7D2 MUTATED" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE"   "OR7D2 MUTATED"   "OR7D2 MUTATED" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE"   "OR7D2 MUTATED" "OR7D2 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE"   "OR7D2 MUTATED" "OR7D2 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
  "OR7D2 MUTATED" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"OR7D2 WILD-TYPE"   "OR7D2 MUTATED" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE"   "OR7D2 MUTATED" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE"   "OR7D2 MUTATED" "OR7D2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
  "OR7D2 MUTATED" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"OR7D2 WILD-TYPE"   "OR7D2 MUTATED" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE"   "OR7D2 MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE"   "OR7D2 MUTATED" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"OR7D2 WILD-TYPE"   "OR7D2 MUTATED" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE"   "OR7D2 MUTATED" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE"   "OR7D2 MUTATED"   "OR7D2 MUTATED" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE"   "OR7D2 MUTATED" "OR7D2 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE"   "OR7D2 MUTATED" "OR7D2 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
  "OR7D2 MUTATED" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"OR7D2 WILD-TYPE"   "OR7D2 MUTATED" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE"   "OR7D2 MUTATED" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE"   "OR7D2 MUTATED" "OR7D2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
  "OR7D2 MUTATED" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"OR7D2 WILD-TYPE"   "OR7D2 MUTATED" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE"   "OR7D2 MUTATED" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE"   "OR7D2 MUTATED" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"OR7D2 WILD-TYPE"   "OR7D2 MUTATED" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE"   "OR7D2 MUTATED" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE"   "OR7D2 MUTATED"   "OR7D2 MUTATED" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE"   "OR7D2 MUTATED" "OR7D2 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE"   "OR7D2 MUTATED" "OR7D2 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
  "OR7D2 MUTATED" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"OR7D2 WILD-TYPE"   "OR7D2 MUTATED" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE"   "OR7D2 MUTATED" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"OR7D2 WILD-TYPE" "OR7D2 WILD-TYPE" 
[1] "hr=" "1.1"
D112V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  OR7D2 MUTATED                    2             0
  OR7D2 WILD-TYPE                 20             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  OR7D2 MUTATED                                                                                          2
  OR7D2 WILD-TYPE                                                                                       30
                 vv
clus              REGIONAL LYMPH NODE
  OR7D2 MUTATED                    10
  OR7D2 WILD-TYPE                  94
D112V3, multiclass
                                                                                          clus
vv                                                                                         OR7D2 MUTATED
  DISTANT METASTASIS                                                                                   2
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             2
  REGIONAL LYMPH NODE                                                                                 10
                                                                                          clus
vv                                                                                         OR7D2 WILD-TYPE
  DISTANT METASTASIS                                                                                    20
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              30
  REGIONAL LYMPH NODE                                                                                   94
D112V4, binary
                 cls
clus               0  1
  OR7D2 MUTATED    3 11
  OR7D2 WILD-TYPE 57 88
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR7D2 MUTATED      3   11
  OR7D2 WILD-TYPE   57   88
        clus
vv       OR7D2 MUTATED OR7D2 WILD-TYPE
  FEMALE             3              57
  MALE              11              88
                 vv
clus               M0  M1 M1A M1B M1C
  OR7D2 MUTATED    13   0   0   0   0
  OR7D2 WILD-TYPE 125   2   1   2   2
D112V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2A N2B N2C N3 NX
  OR7D2 MUTATED   11  0   0   1   0   1   0  0  0
  OR7D2 WILD-TYPE 76  2   7  14   4   9   5 14  2
D112V6, multiclass
D112V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  OR7D2 MUTATED             0       1        3        0        3         2
  OR7D2 WILD-TYPE           3      16        7       12       15         5
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  OR7D2 MUTATED           2         0         0          0          2
  OR7D2 WILD-TYPE         7         7         7          6         15
                 vv
clus              STAGE IIIC STAGE IV
  OR7D2 MUTATED            0        0
  OR7D2 WILD-TYPE         21        5
D112V8, multiclass

Clustering(113) Variable = CXCR2 MUTATION ANALYSIS
D113V1, survival
                 sevent
clus2              0  1
  CXCR2 MUTATED    5  4
  CXCR2 WILD-TYPE 68 81
  CXCR2 MUTATED CXCR2 WILD-TYPE 
              9             149 
  CXCR2 MUTATED CXCR2 WILD-TYPE 
              4              81 
$`CXCR2 MUTATED`
TCGA-DA-A1HW TCGA-EE-A2GD TCGA-EE-A2GO TCGA-EE-A2MJ TCGA-EE-A2MR TCGA-EE-A2MS 
       36.03       314.53       101.95        96.23       103.56       136.44 
TCGA-FS-A1ZC TCGA-FS-A1ZM TCGA-FS-A1ZZ 
      357.37       101.26        27.02 

$`CXCR2 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HY 
      148.31        49.74         2.70         6.38        48.89       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
       20.38       194.83       176.55        35.93       107.34        61.18 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       53.92        65.92        23.44        68.09        28.60        10.49 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 
      215.44        15.68        29.82         8.65        33.73        14.70 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A 
       26.86         4.93       109.64        78.87       168.26        63.32 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M 
       47.84        13.97        39.62        32.19         2.56        44.35 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T 
       18.58        56.42        37.35        14.47        55.89       345.96 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 
       25.87        17.92        46.82        78.94        24.43        39.25 
TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI 
       58.75        47.54        43.23       135.91       182.01        22.55 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GP 
       89.33        54.71        55.00        75.48        90.94        13.87 
TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 
       14.30        55.59        19.56        67.13        21.67       129.24 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG 
       28.80        19.76        61.51        47.28       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN 
       16.96       204.62       144.76       203.01       167.87        47.54 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB 
      248.61        43.23        41.59        53.26         4.24       122.73 
TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH 
       25.84         3.68        26.73        13.81        23.47       138.77 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 
       12.59        26.37         6.41       131.08        44.05        79.99 
TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 
       80.32       216.92        48.59       228.59       202.62        20.91 
TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZE 
       28.08         7.76        27.68        48.85        53.52        40.27 
TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZP 
       15.45         9.70        32.71        47.38        23.93        74.73 
TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW 
      133.55        11.41       148.77        53.16        26.56        49.48 
TCGA-FS-A1ZY TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
       27.06         0.20        76.41       120.46       117.93        84.72 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       10.09        64.41        62.76        32.48        39.58 

  CXCR2 MUTATED CXCR2 WILD-TYPE 
          27.02            0.20 
  CXCR2 MUTATED CXCR2 WILD-TYPE 
         357.37          345.96 
  CXCR2 MUTATED CXCR2 WILD-TYPE 
         101.95           47.28 
[1] "27.0 - 357.4 (102.0)" "0.2 - 346.0 (47.3)"  
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE"   "CXCR2 MUTATED" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE"   "CXCR2 MUTATED" "CXCR2 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE"   "CXCR2 MUTATED" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE"   "CXCR2 MUTATED" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE"   "CXCR2 MUTATED"   "CXCR2 MUTATED" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE"   "CXCR2 MUTATED" "CXCR2 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE"   "CXCR2 MUTATED" "CXCR2 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE"   "CXCR2 MUTATED" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE"   "CXCR2 MUTATED" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE"   "CXCR2 MUTATED" "CXCR2 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE"   "CXCR2 MUTATED" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE"   "CXCR2 MUTATED" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE"   "CXCR2 MUTATED"   "CXCR2 MUTATED" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE"   "CXCR2 MUTATED" "CXCR2 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE"   "CXCR2 MUTATED" "CXCR2 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE"   "CXCR2 MUTATED" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE"   "CXCR2 MUTATED" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE"   "CXCR2 MUTATED" "CXCR2 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE"   "CXCR2 MUTATED" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE"   "CXCR2 MUTATED" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE"   "CXCR2 MUTATED"   "CXCR2 MUTATED" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE"   "CXCR2 MUTATED" "CXCR2 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE"   "CXCR2 MUTATED" "CXCR2 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE"   "CXCR2 MUTATED" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"CXCR2 WILD-TYPE" "CXCR2 WILD-TYPE" 
[1] "hr=" "3.1"
D113V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  CXCR2 MUTATED                    2             0
  CXCR2 WILD-TYPE                 20             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  CXCR2 MUTATED                                                                                          3
  CXCR2 WILD-TYPE                                                                                       29
                 vv
clus              REGIONAL LYMPH NODE
  CXCR2 MUTATED                     4
  CXCR2 WILD-TYPE                 100
D113V3, multiclass
                                                                                          clus
vv                                                                                         CXCR2 MUTATED
  DISTANT METASTASIS                                                                                   2
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             3
  REGIONAL LYMPH NODE                                                                                  4
                                                                                          clus
vv                                                                                         CXCR2 WILD-TYPE
  DISTANT METASTASIS                                                                                    20
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              29
  REGIONAL LYMPH NODE                                                                                  100
D113V4, binary
                 cls
clus               0  1
  CXCR2 MUTATED    4  5
  CXCR2 WILD-TYPE 56 94
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CXCR2 MUTATED      4    5
  CXCR2 WILD-TYPE   56   94
        clus
vv       CXCR2 MUTATED CXCR2 WILD-TYPE
  FEMALE             4              56
  MALE               5              94
                 vv
clus               M0  M1 M1A M1B M1C
  CXCR2 MUTATED     9   0   0   0   0
  CXCR2 WILD-TYPE 129   2   1   2   2
D113V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2A N2B N2C N3 NX
  CXCR2 MUTATED    7  0   0   1   0   0   1  0  0
  CXCR2 WILD-TYPE 80  2   7  14   4  10   4 14  2
D113V6, multiclass
D113V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  CXCR2 MUTATED             1       1        0        0        3         0
  CXCR2 WILD-TYPE           2      16       10       12       15         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  CXCR2 MUTATED           2         0         1          0          1
  CXCR2 WILD-TYPE         7         7         6          6         16
                 vv
clus              STAGE IIIC STAGE IV
  CXCR2 MUTATED            0        0
  CXCR2 WILD-TYPE         21        5
D113V8, multiclass

Clustering(114) Variable = RBM22 MUTATION ANALYSIS
D114V1, survival
                 sevent
clus2              0  1
  RBM22 MUTATED    1  3
  RBM22 WILD-TYPE 72 82
  RBM22 MUTATED RBM22 WILD-TYPE 
              4             154 
  RBM22 MUTATED RBM22 WILD-TYPE 
              3              82 
$`RBM22 MUTATED`
TCGA-EE-A20H TCGA-EE-A29D TCGA-EE-A2M5 TCGA-EE-A2MS 
      168.26        13.97        21.67       136.44 

$`RBM22 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW 
      148.31        49.74         2.70         6.38        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       61.18        53.92        65.92        23.44        68.09        28.60 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
       10.49       215.44        15.68        29.82         8.65        33.73 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29A 
       14.70        26.86         4.93       109.64        78.87        63.32 
TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N 
       47.84        39.62        32.19         2.56        44.35        18.58 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V 
       56.42        37.35        14.47        55.89       345.96        25.87 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
       17.92        46.82        78.94        24.43        39.25        58.75 
TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI 
       47.54        43.23       314.53       135.91       182.01        22.55 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO 
       89.33        54.71        55.00        75.48        90.94       101.95 
TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M6 
       13.87        14.30        55.59        19.56        67.13       129.24 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG 
       28.80        19.76        61.51        47.28       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM 
       16.96       204.62        96.23       144.76       203.01       167.87 
TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MT TCGA-EE-A2MU 
       47.54       248.61        43.23       103.56        41.59        53.26 
TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF 
        4.24       122.73        25.84         3.68        26.73        13.81 
TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
       23.47       138.77        12.59        26.37         6.41       131.08 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY 
       44.05        79.99        80.32       216.92        48.59       228.59 
TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB 
      202.62        20.91        28.08         7.76        27.68        48.85 
TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH 
      357.37        53.52        40.27        15.45         9.70        32.71 
TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR 
       47.38        23.93       101.26        74.73       133.55        11.41 
TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ 
      148.77        53.16        26.56        49.48        27.06        27.02 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        0.20        76.41       120.46       117.93        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       64.41        62.76        32.48        39.58 

  RBM22 MUTATED RBM22 WILD-TYPE 
          13.97            0.20 
  RBM22 MUTATED RBM22 WILD-TYPE 
         168.26          357.37 
  RBM22 MUTATED RBM22 WILD-TYPE 
         79.055          47.540 
[1] "14.0 - 168.3 (79.1)" "0.2 - 357.4 (47.5)" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE"   "RBM22 MUTATED" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE"   "RBM22 MUTATED" "RBM22 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"RBM22 WILD-TYPE"   "RBM22 MUTATED" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE"   "RBM22 MUTATED" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE"   "RBM22 MUTATED" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE"   "RBM22 MUTATED" "RBM22 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"RBM22 WILD-TYPE"   "RBM22 MUTATED" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE"   "RBM22 MUTATED" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE"   "RBM22 MUTATED" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE"   "RBM22 MUTATED" "RBM22 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"RBM22 WILD-TYPE"   "RBM22 MUTATED" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE"   "RBM22 MUTATED" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"RBM22 WILD-TYPE" "RBM22 WILD-TYPE" 
[1] "hr=" "1.2"
D114V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  RBM22 MUTATED                    1             0
  RBM22 WILD-TYPE                 21             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  RBM22 MUTATED                                                                                          0
  RBM22 WILD-TYPE                                                                                       32
                 vv
clus              REGIONAL LYMPH NODE
  RBM22 MUTATED                     3
  RBM22 WILD-TYPE                 101
D114V3, multiclass
                                                                                          clus
vv                                                                                         RBM22 MUTATED
  DISTANT METASTASIS                                                                                   1
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             0
  REGIONAL LYMPH NODE                                                                                  3
                                                                                          clus
vv                                                                                         RBM22 WILD-TYPE
  DISTANT METASTASIS                                                                                    21
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              32
  REGIONAL LYMPH NODE                                                                                  101
D114V4, binary
                 cls
clus               0  1
  RBM22 MUTATED    0  4
  RBM22 WILD-TYPE 60 95
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RBM22 MUTATED      0    4
  RBM22 WILD-TYPE   60   95
        clus
vv       RBM22 MUTATED RBM22 WILD-TYPE
  FEMALE             0              60
  MALE               4              95
                 vv
clus               M0  M1 M1A M1B M1C
  RBM22 MUTATED     4   0   0   0   0
  RBM22 WILD-TYPE 134   2   1   2   2
D114V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2A N2B N2C N3 NX
  RBM22 MUTATED    3  0   0   1   0   0   0  0  0
  RBM22 WILD-TYPE 84  2   7  14   4  10   5 14  2
D114V6, multiclass
D114V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  RBM22 MUTATED             0       2        0        0        1         0
  RBM22 WILD-TYPE           3      15       10       12       17         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  RBM22 MUTATED           0         0         0          0          0
  RBM22 WILD-TYPE         9         7         7          6         17
                 vv
clus              STAGE IIIC STAGE IV
  RBM22 MUTATED            1        0
  RBM22 WILD-TYPE         20        5
D114V8, multiclass

Clustering(115) Variable = CX3CL1 MUTATION ANALYSIS
D115V1, survival
                  sevent
clus2               0  1
  CX3CL1 MUTATED    2  1
  CX3CL1 WILD-TYPE 71 84
  CX3CL1 MUTATED CX3CL1 WILD-TYPE 
               3              155 
  CX3CL1 MUTATED CX3CL1 WILD-TYPE 
               1               84 
$`CX3CL1 MUTATED`
TCGA-EE-A2GJ TCGA-EE-A3AD TCGA-FS-A1Z0 
       89.33         3.68       202.62 

$`CX3CL1 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW 
      148.31        49.74         2.70         6.38        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       61.18        53.92        65.92        23.44        68.09        28.60 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
       10.49       215.44        15.68        29.82         8.65        33.73 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H 
       14.70        26.86         4.93       109.64        78.87       168.26 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L 
       63.32        47.84        13.97        39.62        32.19         2.56 
TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
       44.35        18.58        56.42        37.35        14.47        55.89 
TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
      345.96        25.87        17.92        46.82        78.94        24.43 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE 
       39.25        58.75        47.54        43.23       314.53       135.91 
TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN 
      182.01        22.55        54.71        55.00        75.48        90.94 
TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU 
      101.95        13.87        14.30        55.59        19.56        67.13 
TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD 
       21.67       129.24        28.80        19.76        61.51        47.28 
TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK 
      103.27       103.17        16.96       204.62        96.23       144.76 
TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR 
      203.01       167.87        47.54       248.61        43.23       103.56 
TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC 
      136.44        41.59        53.26         4.24       122.73        25.84 
TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F 
       26.73        13.81        23.47       138.77        12.59        26.37 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW 
        6.41       131.08        44.05        79.99        80.32       216.92 
TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA 
       48.59       228.59        20.91        28.08         7.76        27.68 
TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG 
       48.85       357.37        53.52        40.27        15.45         9.70 
TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ 
       32.71        47.38        23.93       101.26        74.73       133.55 
TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY 
       11.41       148.77        53.16        26.56        49.48        27.06 
TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
       27.02         0.20        76.41       120.46       117.93        84.72 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       10.09        64.41        62.76        32.48        39.58 

  CX3CL1 MUTATED CX3CL1 WILD-TYPE 
            3.68             0.20 
  CX3CL1 MUTATED CX3CL1 WILD-TYPE 
          202.62           357.37 
  CX3CL1 MUTATED CX3CL1 WILD-TYPE 
           89.33            47.54 
[1] "3.7 - 202.6 (89.3)" "0.2 - 357.4 (47.5)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE"   "CX3CL1 MUTATED" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"CX3CL1 WILD-TYPE"   "CX3CL1 MUTATED" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
  "CX3CL1 MUTATED" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE"   "CX3CL1 MUTATED" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"CX3CL1 WILD-TYPE"   "CX3CL1 MUTATED" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
  "CX3CL1 MUTATED" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE"   "CX3CL1 MUTATED" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"CX3CL1 WILD-TYPE"   "CX3CL1 MUTATED" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
  "CX3CL1 MUTATED" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
[1] "hr=" "2.1"
D115V2, continuous
                  vv
clus               DISTANT METASTASIS PRIMARY TUMOR
  CX3CL1 MUTATED                    1             0
  CX3CL1 WILD-TYPE                 21             1
                  vv
clus               REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  CX3CL1 MUTATED                                                                                          0
  CX3CL1 WILD-TYPE                                                                                       32
                  vv
clus               REGIONAL LYMPH NODE
  CX3CL1 MUTATED                     2
  CX3CL1 WILD-TYPE                 102
D115V3, multiclass
                                                                                          clus
vv                                                                                         CX3CL1 MUTATED
  DISTANT METASTASIS                                                                                    1
  PRIMARY TUMOR                                                                                         0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              0
  REGIONAL LYMPH NODE                                                                                   2
                                                                                          clus
vv                                                                                         CX3CL1 WILD-TYPE
  DISTANT METASTASIS                                                                                     21
  PRIMARY TUMOR                                                                                           1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               32
  REGIONAL LYMPH NODE                                                                                   102
D115V4, binary
                  cls
clus                0  1
  CX3CL1 MUTATED    1  2
  CX3CL1 WILD-TYPE 59 97
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CX3CL1 MUTATED      1    2
  CX3CL1 WILD-TYPE   59   97
        clus
vv       CX3CL1 MUTATED CX3CL1 WILD-TYPE
  FEMALE              1               59
  MALE                2               97
                  vv
clus                M0  M1 M1A M1B M1C
  CX3CL1 MUTATED     2   0   0   0   0
  CX3CL1 WILD-TYPE 136   2   1   2   2
D115V5, multiclass
[1] "Remove cluster labels:" "CX3CL1 MUTATED"        
clus
  CX3CL1 MUTATED CX3CL1 WILD-TYPE 
               2              143 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GK       TCGA-EE-A2GL 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO       TCGA-EE-A2GP 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT       TCGA-EE-A2GU 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7       TCGA-EE-A2M8 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME       TCGA-EE-A2MG 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ       TCGA-EE-A2MK 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN       TCGA-EE-A2MP 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS       TCGA-EE-A2MT 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2MU       TCGA-EE-A3AE       TCGA-EE-A3AH       TCGA-ER-A19D 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-ER-A19F       TCGA-ER-A19J       TCGA-ER-A19O       TCGA-ER-A1A1 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1Z4       TCGA-FS-A1Z7       TCGA-FS-A1ZA       TCGA-FS-A1ZB 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZC       TCGA-FS-A1ZD       TCGA-FS-A1ZE       TCGA-FS-A1ZF 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZG       TCGA-FS-A1ZH       TCGA-FS-A1ZJ       TCGA-FS-A1ZK 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZM       TCGA-FS-A1ZP       TCGA-FS-A1ZQ       TCGA-FS-A1ZR 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZS       TCGA-FS-A1ZT       TCGA-FS-A1ZU       TCGA-FS-A1ZW 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZY       TCGA-FS-A1ZZ       TCGA-FW-A3I3       TCGA-GN-A261 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
                  vv
clus               N0 N1 N1A N1B N2A N2B N2C N3 NX
  CX3CL1 MUTATED    2  0   0   0   0   0   0  0  0
  CX3CL1 WILD-TYPE 85  2   7  15   4  10   5 14  2
D115V6, multiclass
[1] "Remove cluster labels:" "CX3CL1 MUTATED"        
clus
  CX3CL1 MUTATED CX3CL1 WILD-TYPE 
               2              144 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GK       TCGA-EE-A2GL 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO       TCGA-EE-A2GP 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT       TCGA-EE-A2GU 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7       TCGA-EE-A2M8 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME       TCGA-EE-A2MG 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ       TCGA-EE-A2MK 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN       TCGA-EE-A2MP 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS       TCGA-EE-A2MT 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2MU       TCGA-EE-A3AE       TCGA-EE-A3AH       TCGA-ER-A19D 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-ER-A19F       TCGA-ER-A19J       TCGA-ER-A19O       TCGA-ER-A1A1 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1Z4       TCGA-FS-A1Z7       TCGA-FS-A1ZA       TCGA-FS-A1ZB 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZC       TCGA-FS-A1ZD       TCGA-FS-A1ZE       TCGA-FS-A1ZF 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZG       TCGA-FS-A1ZH       TCGA-FS-A1ZJ       TCGA-FS-A1ZK 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZM       TCGA-FS-A1ZP       TCGA-FS-A1ZQ       TCGA-FS-A1ZR 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZS       TCGA-FS-A1ZT       TCGA-FS-A1ZU       TCGA-FS-A1ZW 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZY       TCGA-FS-A1ZZ       TCGA-FW-A3I3       TCGA-GN-A261 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A       TCGA-GN-A26D 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
D115V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  CX3CL1 MUTATED             0       0        2        0        0         0
  CX3CL1 WILD-TYPE           3      17        8       12       18         7
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  CX3CL1 MUTATED           0         0         0          0          0
  CX3CL1 WILD-TYPE         9         7         7          6         17
                  vv
clus               STAGE IIIC STAGE IV
  CX3CL1 MUTATED            0        0
  CX3CL1 WILD-TYPE         21        5
D115V8, multiclass
[1] "Remove cluster labels:" "CX3CL1 MUTATED"        
clus
  CX3CL1 MUTATED CX3CL1 WILD-TYPE 
               2              137 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-DA-A1HV       TCGA-DA-A1HW 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29P 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S       TCGA-EE-A29V 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A29X       TCGA-EE-A2A0       TCGA-EE-A2A1       TCGA-EE-A2A2 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2A5       TCGA-EE-A2A6       TCGA-EE-A2GB       TCGA-EE-A2GC 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2GD       TCGA-EE-A2GE       TCGA-EE-A2GH       TCGA-EE-A2GI 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2GK       TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2GO       TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2GT       TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2M7       TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2ME       TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2MJ       TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2MN       TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A2MS       TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AE 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19J       TCGA-ER-A19O 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-ER-A1A1       TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1YY       TCGA-FS-A1Z4       TCGA-FS-A1Z7       TCGA-FS-A1ZA 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD       TCGA-FS-A1ZE 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH       TCGA-FS-A1ZJ 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP       TCGA-FS-A1ZQ 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT       TCGA-FS-A1ZU 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ       TCGA-FW-A3I3 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-GN-A261       TCGA-GN-A267       TCGA-GN-A268       TCGA-GN-A26A 
"CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" "CX3CL1 WILD-TYPE" 
      TCGA-GN-A26D 
"CX3CL1 WILD-TYPE" 

Clustering(116) Variable = IGF2BP3 MUTATION ANALYSIS
D116V1, survival
                   sevent
clus2                0  1
  IGF2BP3 MUTATED    2  1
  IGF2BP3 WILD-TYPE 71 84
  IGF2BP3 MUTATED IGF2BP3 WILD-TYPE 
                3               155 
  IGF2BP3 MUTATED IGF2BP3 WILD-TYPE 
                1                84 
$`IGF2BP3 MUTATED`
TCGA-EE-A2GJ TCGA-EE-A3AC TCGA-FS-A1ZZ 
       89.33        25.84        27.02 

$`IGF2BP3 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW 
      148.31        49.74         2.70         6.38        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       61.18        53.92        65.92        23.44        68.09        28.60 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
       10.49       215.44        15.68        29.82         8.65        33.73 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H 
       14.70        26.86         4.93       109.64        78.87       168.26 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L 
       63.32        47.84        13.97        39.62        32.19         2.56 
TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
       44.35        18.58        56.42        37.35        14.47        55.89 
TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
      345.96        25.87        17.92        46.82        78.94        24.43 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE 
       39.25        58.75        47.54        43.23       314.53       135.91 
TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN 
      182.01        22.55        54.71        55.00        75.48        90.94 
TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU 
      101.95        13.87        14.30        55.59        19.56        67.13 
TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD 
       21.67       129.24        28.80        19.76        61.51        47.28 
TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK 
      103.27       103.17        16.96       204.62        96.23       144.76 
TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR 
      203.01       167.87        47.54       248.61        43.23       103.56 
TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AD 
      136.44        41.59        53.26         4.24       122.73         3.68 
TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F 
       26.73        13.81        23.47       138.77        12.59        26.37 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW 
        6.41       131.08        44.05        79.99        80.32       216.92 
TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 
       48.59       228.59       202.62        20.91        28.08         7.76 
TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF 
       27.68        48.85       357.37        53.52        40.27        15.45 
TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP 
        9.70        32.71        47.38        23.93       101.26        74.73 
TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW 
      133.55        11.41       148.77        53.16        26.56        49.48 
TCGA-FS-A1ZY TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
       27.06         0.20        76.41       120.46       117.93        84.72 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       10.09        64.41        62.76        32.48        39.58 

  IGF2BP3 MUTATED IGF2BP3 WILD-TYPE 
            25.84              0.20 
  IGF2BP3 MUTATED IGF2BP3 WILD-TYPE 
            89.33            357.37 
  IGF2BP3 MUTATED IGF2BP3 WILD-TYPE 
            27.02             47.54 
[1] "25.8 - 89.3 (27.0)" "0.2 - 357.4 (47.5)"
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE"   "IGF2BP3 MUTATED" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
  "IGF2BP3 MUTATED" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE"   "IGF2BP3 MUTATED" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE"   "IGF2BP3 MUTATED" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
  "IGF2BP3 MUTATED" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE"   "IGF2BP3 MUTATED" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE"   "IGF2BP3 MUTATED" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
  "IGF2BP3 MUTATED" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE"   "IGF2BP3 MUTATED" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
[1] "hr=" "1.2"
D116V2, continuous
                   vv
clus                DISTANT METASTASIS PRIMARY TUMOR
  IGF2BP3 MUTATED                    1             0
  IGF2BP3 WILD-TYPE                 21             1
                   vv
clus                REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  IGF2BP3 MUTATED                                                                                          0
  IGF2BP3 WILD-TYPE                                                                                       32
                   vv
clus                REGIONAL LYMPH NODE
  IGF2BP3 MUTATED                     2
  IGF2BP3 WILD-TYPE                 102
D116V3, multiclass
                                                                                          clus
vv                                                                                         IGF2BP3 MUTATED
  DISTANT METASTASIS                                                                                     1
  PRIMARY TUMOR                                                                                          0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               0
  REGIONAL LYMPH NODE                                                                                    2
                                                                                          clus
vv                                                                                         IGF2BP3 WILD-TYPE
  DISTANT METASTASIS                                                                                      21
  PRIMARY TUMOR                                                                                            1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                32
  REGIONAL LYMPH NODE                                                                                    102
D116V4, binary
                   cls
clus                 0  1
  IGF2BP3 MUTATED    1  2
  IGF2BP3 WILD-TYPE 59 97
[1] "tbl2"
                   cls
clus                [,1] [,2]
  IGF2BP3 MUTATED      1    2
  IGF2BP3 WILD-TYPE   59   97
        clus
vv       IGF2BP3 MUTATED IGF2BP3 WILD-TYPE
  FEMALE               1                59
  MALE                 2                97
                   vv
clus                 M0  M1 M1A M1B M1C
  IGF2BP3 MUTATED     2   0   0   0   0
  IGF2BP3 WILD-TYPE 136   2   1   2   2
D116V5, multiclass
[1] "Remove cluster labels:" "IGF2BP3 MUTATED"       
clus
  IGF2BP3 MUTATED IGF2BP3 WILD-TYPE 
                2               143 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GK        TCGA-EE-A2GL 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO        TCGA-EE-A2GP 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT        TCGA-EE-A2GU 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7        TCGA-EE-A2M8 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME        TCGA-EE-A2MG 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ        TCGA-EE-A2MK 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN        TCGA-EE-A2MP 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS        TCGA-EE-A2MT 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2MU        TCGA-EE-A3AE        TCGA-EE-A3AH        TCGA-ER-A19D 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19O        TCGA-ER-A1A1 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z4        TCGA-FS-A1Z7        TCGA-FS-A1ZA 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZQ 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FW-A3I3        TCGA-GN-A261 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
                   vv
clus                N0 N1 N1A N1B N2A N2B N2C N3 NX
  IGF2BP3 MUTATED    2  0   0   0   0   0   0  0  0
  IGF2BP3 WILD-TYPE 85  2   7  15   4  10   5 14  2
D116V6, multiclass
[1] "Remove cluster labels:" "IGF2BP3 MUTATED"       
clus
  IGF2BP3 MUTATED IGF2BP3 WILD-TYPE 
                2               144 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GK        TCGA-EE-A2GL 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO        TCGA-EE-A2GP 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT        TCGA-EE-A2GU 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7        TCGA-EE-A2M8 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME        TCGA-EE-A2MG 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ        TCGA-EE-A2MK 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN        TCGA-EE-A2MP 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS        TCGA-EE-A2MT 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2MU        TCGA-EE-A3AE        TCGA-EE-A3AH        TCGA-ER-A19D 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-ER-A19F        TCGA-ER-A19J        TCGA-ER-A19O        TCGA-ER-A1A1 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z4        TCGA-FS-A1Z7        TCGA-FS-A1ZA 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD        TCGA-FS-A1ZE 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH        TCGA-FS-A1ZJ 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP        TCGA-FS-A1ZQ 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT        TCGA-FS-A1ZU 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FW-A3I3        TCGA-GN-A261 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A        TCGA-GN-A26D 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
D116V7, continuous
                   vv
clus                I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  IGF2BP3 MUTATED             0       0        1        0        0         0
  IGF2BP3 WILD-TYPE           3      17        9       12       18         7
                   vv
clus                STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  IGF2BP3 MUTATED           1         0         0          0          0
  IGF2BP3 WILD-TYPE         8         7         7          6         17
                   vv
clus                STAGE IIIC STAGE IV
  IGF2BP3 MUTATED            0        0
  IGF2BP3 WILD-TYPE         21        5
D116V8, multiclass
[1] "Remove cluster labels:" "IGF2BP3 MUTATED"       
clus
  IGF2BP3 MUTATED IGF2BP3 WILD-TYPE 
                2               137 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-DA-A1HV        TCGA-DA-A1HW 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29P 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S        TCGA-EE-A29V 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A29X        TCGA-EE-A2A0        TCGA-EE-A2A1        TCGA-EE-A2A2 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2A5        TCGA-EE-A2A6        TCGA-EE-A2GB        TCGA-EE-A2GC 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2GD        TCGA-EE-A2GE        TCGA-EE-A2GH        TCGA-EE-A2GI 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2GK        TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2GO        TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2GT        TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2M7        TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2ME        TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2MJ        TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2MN        TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A2MS        TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AE 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19J        TCGA-ER-A19O 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-ER-A1A1        TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1YY        TCGA-FS-A1Z0        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FW-A3I3 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-GN-A261        TCGA-GN-A267        TCGA-GN-A268        TCGA-GN-A26A 
"IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" "IGF2BP3 WILD-TYPE" 
       TCGA-GN-A26D 
"IGF2BP3 WILD-TYPE" 

Clustering(117) Variable = KLRC3 MUTATION ANALYSIS
D117V1, survival
                 sevent
clus2              0  1
  KLRC3 MUTATED    3  1
  KLRC3 WILD-TYPE 70 84
  KLRC3 MUTATED KLRC3 WILD-TYPE 
              4             154 
  KLRC3 MUTATED KLRC3 WILD-TYPE 
              1              84 
$`KLRC3 MUTATED`
TCGA-D9-A1JW TCGA-DA-A1HW TCGA-EE-A2ML TCGA-EE-A3AE 
        2.70        36.03       203.01        26.73 

$`KLRC3 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HY TCGA-DA-A1I0 
      148.31        49.74         6.38        48.89       117.17        20.38 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
      194.83       176.55        35.93       107.34        61.18        53.92 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       65.92        23.44        68.09        28.60        10.49       215.44 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
       15.68        29.82         8.65        33.73        14.70        26.86 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.93       109.64        78.87       168.26        63.32        47.84 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N 
       13.97        39.62        32.19         2.56        44.35        18.58 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V 
       56.42        37.35        14.47        55.89       345.96        25.87 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
       17.92        46.82        78.94        24.43        39.25        58.75 
TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI 
       47.54        43.23       314.53       135.91       182.01        22.55 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO 
       89.33        54.71        55.00        75.48        90.94       101.95 
TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 
       13.87        14.30        55.59        19.56        67.13        21.67 
TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME 
      129.24        28.80        19.76        61.51        47.28       103.27 
TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2MM 
      103.17        16.96       204.62        96.23       144.76       167.87 
TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT 
       47.54       248.61        43.23       103.56       136.44        41.59 
TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AF 
       53.26         4.24       122.73        25.84         3.68        13.81 
TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
       23.47       138.77        12.59        26.37         6.41       131.08 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY 
       44.05        79.99        80.32       216.92        48.59       228.59 
TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB 
      202.62        20.91        28.08         7.76        27.68        48.85 
TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH 
      357.37        53.52        40.27        15.45         9.70        32.71 
TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR 
       47.38        23.93       101.26        74.73       133.55        11.41 
TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ 
      148.77        53.16        26.56        49.48        27.06        27.02 
TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 
        0.20        76.41       120.46       117.93        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       64.41        62.76        32.48        39.58 

  KLRC3 MUTATED KLRC3 WILD-TYPE 
            2.7             0.2 
  KLRC3 MUTATED KLRC3 WILD-TYPE 
         203.01          357.37 
  KLRC3 MUTATED KLRC3 WILD-TYPE 
          31.38           47.69 
[1] "2.7 - 203.0 (31.4)" "0.2 - 357.4 (47.7)"
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
  "KLRC3 MUTATED" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE"   "KLRC3 MUTATED" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"KLRC3 WILD-TYPE"   "KLRC3 MUTATED" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE"   "KLRC3 MUTATED" "KLRC3 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
  "KLRC3 MUTATED" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE"   "KLRC3 MUTATED" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"KLRC3 WILD-TYPE"   "KLRC3 MUTATED" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE"   "KLRC3 MUTATED" "KLRC3 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
  "KLRC3 MUTATED" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE"   "KLRC3 MUTATED" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"KLRC3 WILD-TYPE"   "KLRC3 MUTATED" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE"   "KLRC3 MUTATED" "KLRC3 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
[1] "hr=" "2"  
D117V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  KLRC3 MUTATED                    0             0
  KLRC3 WILD-TYPE                 22             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  KLRC3 MUTATED                                                                                          0
  KLRC3 WILD-TYPE                                                                                       32
                 vv
clus              REGIONAL LYMPH NODE
  KLRC3 MUTATED                     4
  KLRC3 WILD-TYPE                 100
D117V3, multiclass
                                                                                          clus
vv                                                                                         KLRC3 MUTATED
  DISTANT METASTASIS                                                                                   0
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             0
  REGIONAL LYMPH NODE                                                                                  4
                                                                                          clus
vv                                                                                         KLRC3 WILD-TYPE
  DISTANT METASTASIS                                                                                    22
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              32
  REGIONAL LYMPH NODE                                                                                  100
D117V4, binary
                 cls
clus               0  1
  KLRC3 MUTATED    2  2
  KLRC3 WILD-TYPE 58 97
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KLRC3 MUTATED      2    2
  KLRC3 WILD-TYPE   58   97
        clus
vv       KLRC3 MUTATED KLRC3 WILD-TYPE
  FEMALE             2              58
  MALE               2              97
                 vv
clus               M0  M1 M1A M1B M1C
  KLRC3 MUTATED     4   0   0   0   0
  KLRC3 WILD-TYPE 134   2   1   2   2
D117V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2A N2B N2C N3 NX
  KLRC3 MUTATED    2  0   0   1   1   0   0  0  0
  KLRC3 WILD-TYPE 85  2   7  14   3  10   5 14  2
D117V6, multiclass
D117V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  KLRC3 MUTATED             0       0        1        0        1         0
  KLRC3 WILD-TYPE           3      17        9       12       17         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  KLRC3 MUTATED           0         0         0          0          1
  KLRC3 WILD-TYPE         9         7         7          6         16
                 vv
clus              STAGE IIIC STAGE IV
  KLRC3 MUTATED            0        0
  KLRC3 WILD-TYPE         21        5
D117V8, multiclass

Clustering(118) Variable = LRRIQ4 MUTATION ANALYSIS
D118V1, survival
                  sevent
clus2               0  1
  LRRIQ4 MUTATED    9  6
  LRRIQ4 WILD-TYPE 64 79
  LRRIQ4 MUTATED LRRIQ4 WILD-TYPE 
              15              143 
  LRRIQ4 MUTATED LRRIQ4 WILD-TYPE 
               6               79 
$`LRRIQ4 MUTATED`
TCGA-D3-A2JF TCGA-DA-A1HV TCGA-EE-A29D TCGA-EE-A2A5 TCGA-EE-A2GC TCGA-EE-A2GM 
       48.76        48.89        13.97        39.25        43.23        75.48 
TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2MD TCGA-EE-A2MJ TCGA-EE-A2MM TCGA-EE-A2MP 
       14.30        55.59        47.28        96.23       167.87       248.61 
TCGA-EE-A2MS TCGA-ER-A3ET TCGA-FS-A1ZF 
      136.44        80.32        15.45 

$`LRRIQ4 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       43.40        65.49        23.77        11.87        12.10        58.03 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
       71.24        60.23        24.53         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
       49.74         2.70         6.38        36.03       117.17        20.38 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
      194.83       176.55        35.93       107.34        61.18        53.92 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       65.92        23.44        68.09        28.60        10.49       215.44 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
       15.68        29.82         8.65        33.73        14.70        26.86 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.93       109.64        78.87       168.26        63.32        47.84 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
       39.62        32.19         2.56        44.35        18.58        56.42 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X 
       37.35        14.47        55.89       345.96        25.87        17.92 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GD 
       46.82        78.94        24.43        58.75        47.54       314.53 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL 
      135.91       182.01        22.55        89.33        54.71        55.00 
TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 
       90.94       101.95        13.87        19.56        67.13        21.67 
TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2ME TCGA-EE-A2MG 
      129.24        28.80        19.76        61.51       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MN TCGA-EE-A2MQ 
       16.96       204.62       144.76       203.01        47.54        43.23 
TCGA-EE-A2MR TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC 
      103.56        41.59        53.26         4.24       122.73        25.84 
TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D 
        3.68        26.73        13.81        23.47       138.77        12.59 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FS-A1YW 
       26.37         6.41       131.08        44.05        79.99       216.92 
TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 
       48.59       228.59       202.62        20.91        28.08         7.76 
TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZG 
       27.68        48.85       357.37        53.52        40.27         9.70 
TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ 
       32.71        47.38        23.93       101.26        74.73       133.55 
TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY 
       11.41       148.77        53.16        26.56        49.48        27.06 
TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
       27.02         0.20        76.41       120.46       117.93        84.72 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       10.09        64.41        62.76        32.48        39.58 

  LRRIQ4 MUTATED LRRIQ4 WILD-TYPE 
           13.97             0.20 
  LRRIQ4 MUTATED LRRIQ4 WILD-TYPE 
          248.61           357.37 
  LRRIQ4 MUTATED LRRIQ4 WILD-TYPE 
           48.89            47.38 
[1] "14.0 - 248.6 (48.9)" "0.2 - 357.4 (47.4)" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE"   "LRRIQ4 MUTATED" "LRRIQ4 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE"   "LRRIQ4 MUTATED" "LRRIQ4 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE"   "LRRIQ4 MUTATED" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE"   "LRRIQ4 MUTATED" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"LRRIQ4 WILD-TYPE"   "LRRIQ4 MUTATED" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"LRRIQ4 WILD-TYPE"   "LRRIQ4 MUTATED" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"LRRIQ4 WILD-TYPE"   "LRRIQ4 MUTATED"   "LRRIQ4 MUTATED" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE"   "LRRIQ4 MUTATED" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE"   "LRRIQ4 MUTATED" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE"   "LRRIQ4 MUTATED" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
  "LRRIQ4 MUTATED" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE"   "LRRIQ4 MUTATED" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
  "LRRIQ4 MUTATED" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"LRRIQ4 WILD-TYPE"   "LRRIQ4 MUTATED" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE"   "LRRIQ4 MUTATED" "LRRIQ4 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE"   "LRRIQ4 MUTATED" "LRRIQ4 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE"   "LRRIQ4 MUTATED" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE"   "LRRIQ4 MUTATED" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"LRRIQ4 WILD-TYPE"   "LRRIQ4 MUTATED" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"LRRIQ4 WILD-TYPE"   "LRRIQ4 MUTATED" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"LRRIQ4 WILD-TYPE"   "LRRIQ4 MUTATED"   "LRRIQ4 MUTATED" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE"   "LRRIQ4 MUTATED" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE"   "LRRIQ4 MUTATED" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE"   "LRRIQ4 MUTATED" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
  "LRRIQ4 MUTATED" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE"   "LRRIQ4 MUTATED" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
  "LRRIQ4 MUTATED" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"LRRIQ4 WILD-TYPE"   "LRRIQ4 MUTATED" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE"   "LRRIQ4 MUTATED" "LRRIQ4 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE"   "LRRIQ4 MUTATED" "LRRIQ4 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE"   "LRRIQ4 MUTATED" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE"   "LRRIQ4 MUTATED" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"LRRIQ4 WILD-TYPE"   "LRRIQ4 MUTATED" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"LRRIQ4 WILD-TYPE"   "LRRIQ4 MUTATED" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"LRRIQ4 WILD-TYPE"   "LRRIQ4 MUTATED"   "LRRIQ4 MUTATED" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE"   "LRRIQ4 MUTATED" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE"   "LRRIQ4 MUTATED" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE"   "LRRIQ4 MUTATED" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
  "LRRIQ4 MUTATED" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE"   "LRRIQ4 MUTATED" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
  "LRRIQ4 MUTATED" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"LRRIQ4 WILD-TYPE"   "LRRIQ4 MUTATED" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"LRRIQ4 WILD-TYPE" "LRRIQ4 WILD-TYPE" 
[1] "hr=" "1.6"
D118V2, continuous
                  vv
clus               DISTANT METASTASIS PRIMARY TUMOR
  LRRIQ4 MUTATED                    2             0
  LRRIQ4 WILD-TYPE                 20             1
                  vv
clus               REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  LRRIQ4 MUTATED                                                                                          4
  LRRIQ4 WILD-TYPE                                                                                       28
                  vv
clus               REGIONAL LYMPH NODE
  LRRIQ4 MUTATED                     9
  LRRIQ4 WILD-TYPE                  95
D118V3, multiclass
                                                                                          clus
vv                                                                                         LRRIQ4 MUTATED
  DISTANT METASTASIS                                                                                    2
  PRIMARY TUMOR                                                                                         0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              4
  REGIONAL LYMPH NODE                                                                                   9
                                                                                          clus
vv                                                                                         LRRIQ4 WILD-TYPE
  DISTANT METASTASIS                                                                                     20
  PRIMARY TUMOR                                                                                           1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               28
  REGIONAL LYMPH NODE                                                                                    95
D118V4, binary
                  cls
clus                0  1
  LRRIQ4 MUTATED    7  8
  LRRIQ4 WILD-TYPE 53 91
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRIQ4 MUTATED      7    8
  LRRIQ4 WILD-TYPE   53   91
        clus
vv       LRRIQ4 MUTATED LRRIQ4 WILD-TYPE
  FEMALE              7               53
  MALE                8               91
                  vv
clus                M0  M1 M1A M1B M1C
  LRRIQ4 MUTATED    15   0   0   0   0
  LRRIQ4 WILD-TYPE 123   2   1   2   2
D118V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2A N2B N2C N3 NX
  LRRIQ4 MUTATED   12  0   1   1   0   1   0  0  0
  LRRIQ4 WILD-TYPE 75  2   6  14   4   9   5 14  2
D118V6, multiclass
D118V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  LRRIQ4 MUTATED             0       2        1        2        4         0
  LRRIQ4 WILD-TYPE           3      15        9       10       14         7
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  LRRIQ4 MUTATED           1         2         0          1          1
  LRRIQ4 WILD-TYPE         8         5         7          5         16
                  vv
clus               STAGE IIIC STAGE IV
  LRRIQ4 MUTATED            1        0
  LRRIQ4 WILD-TYPE         20        5
D118V8, multiclass

Clustering(119) Variable = NR1H4 MUTATION ANALYSIS
D119V1, survival
                 sevent
clus2              0  1
  NR1H4 MUTATED    6  3
  NR1H4 WILD-TYPE 67 82
  NR1H4 MUTATED NR1H4 WILD-TYPE 
              9             149 
  NR1H4 MUTATED NR1H4 WILD-TYPE 
              3              82 
$`NR1H4 MUTATED`
TCGA-D3-A1Q6 TCGA-DA-A1HV TCGA-DA-A1I1 TCGA-DA-A3F8 TCGA-EE-A2GB TCGA-EE-A2MH 
       71.80        48.89       194.83        15.68        47.54        16.96 
TCGA-EE-A2MT TCGA-EE-A3AB TCGA-FS-A1ZA 
       41.59       122.73        27.68 

$`NR1H4 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2J6 
       16.57       112.54       121.22        28.08        31.59        43.40 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 
       65.49        23.77        11.87        48.76        12.10        58.03 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
       71.24        60.23        24.53         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
       49.74         2.70         6.38        36.03       117.17        20.38 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
      176.55        35.93       107.34        61.18        53.92        65.92 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A17X 
       23.44        68.09        28.60        10.49       215.44        29.82 
TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
        8.65        33.73        14.70        26.86         4.93       109.64 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
       78.87       168.26        63.32        47.84        13.97        39.62 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       32.19         2.56        44.35        18.58        56.42        37.35 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
       14.47        55.89       345.96        25.87        17.92        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GC TCGA-EE-A2GD 
       78.94        24.43        39.25        58.75        43.23       314.53 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL 
      135.91       182.01        22.55        89.33        54.71        55.00 
TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS 
       75.48        90.94       101.95        13.87        14.30        55.59 
TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 
       19.56        67.13        21.67       129.24        28.80        19.76 
TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MI TCGA-EE-A2MJ 
       61.51        47.28       103.27       103.17       204.62        96.23 
TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ 
      144.76       203.01       167.87        47.54       248.61        43.23 
TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AC TCGA-EE-A3AD 
      103.56       136.44        53.26         4.24        25.84         3.68 
TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F 
       26.73        13.81        23.47       138.77        12.59        26.37 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW 
        6.41       131.08        44.05        79.99        80.32       216.92 
TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 
       48.59       228.59       202.62        20.91        28.08         7.76 
TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG 
       48.85       357.37        53.52        40.27        15.45         9.70 
TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ 
       32.71        47.38        23.93       101.26        74.73       133.55 
TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY 
       11.41       148.77        53.16        26.56        49.48        27.06 
TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 
       27.02         0.20        76.41       120.46       117.93        84.72 
TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       10.09        64.41        62.76        32.48        39.58 

  NR1H4 MUTATED NR1H4 WILD-TYPE 
          15.68            0.20 
  NR1H4 MUTATED NR1H4 WILD-TYPE 
         194.83          357.37 
  NR1H4 MUTATED NR1H4 WILD-TYPE 
          47.54           47.54 
[1] "15.7 - 194.8 (47.5)" "0.2 - 357.4 (47.5)" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE"   "NR1H4 MUTATED" "NR1H4 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE"   "NR1H4 MUTATED" "NR1H4 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE"   "NR1H4 MUTATED" "NR1H4 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE"   "NR1H4 MUTATED" "NR1H4 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
  "NR1H4 MUTATED" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"NR1H4 WILD-TYPE"   "NR1H4 MUTATED" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
  "NR1H4 MUTATED" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE"   "NR1H4 MUTATED" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
  "NR1H4 MUTATED" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE"   "NR1H4 MUTATED" "NR1H4 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE"   "NR1H4 MUTATED" "NR1H4 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE"   "NR1H4 MUTATED" "NR1H4 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE"   "NR1H4 MUTATED" "NR1H4 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
  "NR1H4 MUTATED" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"NR1H4 WILD-TYPE"   "NR1H4 MUTATED" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
  "NR1H4 MUTATED" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE"   "NR1H4 MUTATED" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
  "NR1H4 MUTATED" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE"   "NR1H4 MUTATED" "NR1H4 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE"   "NR1H4 MUTATED" "NR1H4 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE"   "NR1H4 MUTATED" "NR1H4 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE"   "NR1H4 MUTATED" "NR1H4 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
  "NR1H4 MUTATED" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"NR1H4 WILD-TYPE"   "NR1H4 MUTATED" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
  "NR1H4 MUTATED" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE"   "NR1H4 MUTATED" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
  "NR1H4 MUTATED" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"NR1H4 WILD-TYPE" "NR1H4 WILD-TYPE" 
[1] "hr=" "1.6"
D119V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  NR1H4 MUTATED                    1             0
  NR1H4 WILD-TYPE                 21             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  NR1H4 MUTATED                                                                                          2
  NR1H4 WILD-TYPE                                                                                       30
                 vv
clus              REGIONAL LYMPH NODE
  NR1H4 MUTATED                     6
  NR1H4 WILD-TYPE                  98
D119V3, multiclass
                                                                                          clus
vv                                                                                         NR1H4 MUTATED
  DISTANT METASTASIS                                                                                   1
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             2
  REGIONAL LYMPH NODE                                                                                  6
                                                                                          clus
vv                                                                                         NR1H4 WILD-TYPE
  DISTANT METASTASIS                                                                                    21
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              30
  REGIONAL LYMPH NODE                                                                                   98
D119V4, binary
                 cls
clus               0  1
  NR1H4 MUTATED    2  7
  NR1H4 WILD-TYPE 58 92
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NR1H4 MUTATED      2    7
  NR1H4 WILD-TYPE   58   92
        clus
vv       NR1H4 MUTATED NR1H4 WILD-TYPE
  FEMALE             2              58
  MALE               7              92
                 vv
clus               M0  M1 M1A M1B M1C
  NR1H4 MUTATED     8   0   0   0   0
  NR1H4 WILD-TYPE 130   2   1   2   2
D119V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2A N2B N2C N3 NX
  NR1H4 MUTATED    2  0   1   1   0   2   1  1  0
  NR1H4 WILD-TYPE 85  2   6  14   4   8   4 13  2
D119V6, multiclass
D119V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  NR1H4 MUTATED             0       0        0        1        1         0
  NR1H4 WILD-TYPE           3      17       10       11       17         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  NR1H4 MUTATED           0         0         1          1          3
  NR1H4 WILD-TYPE         9         7         6          5         14
                 vv
clus              STAGE IIIC STAGE IV
  NR1H4 MUTATED            1        0
  NR1H4 WILD-TYPE         20        5
D119V8, multiclass

Clustering(120) Variable = OR4A15 MUTATION ANALYSIS
D120V1, survival
                  sevent
clus2               0  1
  OR4A15 MUTATED    7  7
  OR4A15 WILD-TYPE 66 78
  OR4A15 MUTATED OR4A15 WILD-TYPE 
              14              144 
  OR4A15 MUTATED OR4A15 WILD-TYPE 
               7               78 
$`OR4A15 MUTATED`
TCGA-DA-A1I1 TCGA-EE-A182 TCGA-EE-A20H TCGA-EE-A29D TCGA-EE-A29V TCGA-EE-A2A2 
      194.83        14.70       168.26        13.97        25.87        24.43 
TCGA-EE-A2GC TCGA-EE-A2GH TCGA-EE-A2M6 TCGA-EE-A2MD TCGA-EE-A2MJ TCGA-EE-A3AA 
       43.23       182.01       129.24        47.28        96.23         4.24 
TCGA-FS-A1Z3 TCGA-GN-A265 
       20.91        84.72 

$`OR4A15 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW 
      148.31        49.74         2.70         6.38        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 
      117.17        20.38       176.55        35.93       107.34        61.18 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       53.92        65.92        23.44        68.09        28.60        10.49 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 
      215.44        15.68        29.82         8.65        33.73        26.86 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29E 
        4.93       109.64        78.87        63.32        47.84        39.62 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
       32.19         2.56        44.35        18.58        56.42        37.35 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 
       14.47        55.89       345.96        17.92        46.82        78.94 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GI 
       39.25        58.75        47.54       314.53       135.91        22.55 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO 
       89.33        54.71        55.00        75.48        90.94       101.95 
TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 
       13.87        14.30        55.59        19.56        67.13        21.67 
TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH 
       28.80        19.76        61.51       103.27       103.17        16.96 
TCGA-EE-A2MI TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP 
      204.62       144.76       203.01       167.87        47.54       248.61 
TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AB 
       43.23       103.56       136.44        41.59        53.26       122.73 
TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH 
       25.84         3.68        26.73        13.81        23.47       138.77 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 
       12.59        26.37         6.41       131.08        44.05        79.99 
TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z4 
       80.32       216.92        48.59       228.59       202.62        28.08 
TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE 
        7.76        27.68        48.85       357.37        53.52        40.27 
TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM 
       15.45         9.70        32.71        47.38        23.93       101.26 
TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU 
       74.73       133.55        11.41       148.77        53.16        26.56 
TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 
       49.48        27.06        27.02         0.20        76.41       120.46 
TCGA-GN-A264 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
      117.93        10.09        64.41        62.76        32.48        39.58 

  OR4A15 MUTATED OR4A15 WILD-TYPE 
            4.24             0.20 
  OR4A15 MUTATED OR4A15 WILD-TYPE 
          194.83           357.37 
  OR4A15 MUTATED OR4A15 WILD-TYPE 
          45.255           47.690 
[1] "4.2 - 194.8 (45.3)" "0.2 - 357.4 (47.7)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE"   "OR4A15 MUTATED" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE"   "OR4A15 MUTATED" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE"   "OR4A15 MUTATED" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE"   "OR4A15 MUTATED" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE"   "OR4A15 MUTATED" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE"   "OR4A15 MUTATED" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
[1] "hr=" "1.1"
D120V2, continuous
                  vv
clus               DISTANT METASTASIS PRIMARY TUMOR
  OR4A15 MUTATED                    4             0
  OR4A15 WILD-TYPE                 18             1
                  vv
clus               REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  OR4A15 MUTATED                                                                                          1
  OR4A15 WILD-TYPE                                                                                       31
                  vv
clus               REGIONAL LYMPH NODE
  OR4A15 MUTATED                     9
  OR4A15 WILD-TYPE                  95
D120V3, multiclass
                                                                                          clus
vv                                                                                         OR4A15 MUTATED
  DISTANT METASTASIS                                                                                    4
  PRIMARY TUMOR                                                                                         0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              1
  REGIONAL LYMPH NODE                                                                                   9
                                                                                          clus
vv                                                                                         OR4A15 WILD-TYPE
  DISTANT METASTASIS                                                                                     18
  PRIMARY TUMOR                                                                                           1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               31
  REGIONAL LYMPH NODE                                                                                    95
D120V4, binary
                  cls
clus                0  1
  OR4A15 MUTATED    2 12
  OR4A15 WILD-TYPE 58 87
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4A15 MUTATED      2   12
  OR4A15 WILD-TYPE   58   87
        clus
vv       OR4A15 MUTATED OR4A15 WILD-TYPE
  FEMALE              2               58
  MALE               12               87
                  vv
clus                M0  M1 M1A M1B M1C
  OR4A15 MUTATED    11   0   0   0   0
  OR4A15 WILD-TYPE 127   2   1   2   2
D120V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2A N2B N2C N3 NX
  OR4A15 MUTATED    6  0   0   4   0   0   0  1  0
  OR4A15 WILD-TYPE 81  2   7  11   4  10   5 13  2
D120V6, multiclass
D120V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  OR4A15 MUTATED             0       3        0        0        2         0
  OR4A15 WILD-TYPE           3      14       10       12       16         7
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  OR4A15 MUTATED           1         0         0          0          1
  OR4A15 WILD-TYPE         8         7         7          6         16
                  vv
clus               STAGE IIIC STAGE IV
  OR4A15 MUTATED            4        0
  OR4A15 WILD-TYPE         17        5
D120V8, multiclass

Clustering(121) Variable = MAGEA4 MUTATION ANALYSIS
D121V1, survival
                  sevent
clus2               0  1
  MAGEA4 MUTATED    5  3
  MAGEA4 WILD-TYPE 68 82
  MAGEA4 MUTATED MAGEA4 WILD-TYPE 
               8              150 
  MAGEA4 MUTATED MAGEA4 WILD-TYPE 
               3               82 
$`MAGEA4 MUTATED`
TCGA-D3-A2JF TCGA-DA-A1I5 TCGA-EE-A2GE TCGA-EE-A2GP TCGA-EE-A2GT TCGA-EE-A2ML 
       48.76       107.34       135.91        13.87        19.56       203.01 
TCGA-FS-A1ZZ TCGA-GN-A266 
       27.02        10.09 

$`MAGEA4 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JK TCGA-D3-A3C6 
       43.40        65.49        23.77        11.87        12.10        58.03 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
       71.24        60.23        24.53         9.30        21.47       148.31 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
       49.74         2.70         6.38        48.89        36.03       117.17 
TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I7 TCGA-DA-A1I8 
       20.38       194.83       176.55        35.93        61.18        53.92 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       65.92        23.44        68.09        28.60        10.49       215.44 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
       15.68        29.82         8.65        33.73        14.70        26.86 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.93       109.64        78.87       168.26        63.32        47.84 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N 
       13.97        39.62        32.19         2.56        44.35        18.58 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V 
       56.42        37.35        14.47        55.89       345.96        25.87 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
       17.92        46.82        78.94        24.43        39.25        58.75 
TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ 
       47.54        43.23       314.53       182.01        22.55        89.33 
TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GR 
       54.71        55.00        75.48        90.94       101.95        14.30 
TCGA-EE-A2GS TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 
       55.59        67.13        21.67       129.24        28.80        19.76 
TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI 
       61.51        47.28       103.27       103.17        16.96       204.62 
TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ 
       96.23       144.76       167.87        47.54       248.61        43.23 
TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB 
      103.56       136.44        41.59        53.26         4.24       122.73 
TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH 
       25.84         3.68        26.73        13.81        23.47       138.77 
TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 
       12.59        26.37         6.41       131.08        44.05        79.99 
TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 
       80.32       216.92        48.59       228.59       202.62        20.91 
TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD 
       28.08         7.76        27.68        48.85       357.37        53.52 
TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK 
       40.27        15.45         9.70        32.71        47.38        23.93 
TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT 
      101.26        74.73       133.55        11.41       148.77        53.16 
TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 
       26.56        49.48        27.06         0.20        76.41       120.46 
TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
      117.93        84.72        64.41        62.76        32.48        39.58 

  MAGEA4 MUTATED MAGEA4 WILD-TYPE 
           10.09             0.20 
  MAGEA4 MUTATED MAGEA4 WILD-TYPE 
          203.01           357.37 
  MAGEA4 MUTATED MAGEA4 WILD-TYPE 
           37.89            47.54 
[1] "10.1 - 203.0 (37.9)" "0.2 - 357.4 (47.5)" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE"   "MAGEA4 MUTATED" "MAGEA4 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"MAGEA4 WILD-TYPE"   "MAGEA4 MUTATED" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE"   "MAGEA4 MUTATED" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
  "MAGEA4 MUTATED" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE"   "MAGEA4 MUTATED" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"MAGEA4 WILD-TYPE"   "MAGEA4 MUTATED" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE"   "MAGEA4 MUTATED" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"MAGEA4 WILD-TYPE"   "MAGEA4 MUTATED" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE"   "MAGEA4 MUTATED" "MAGEA4 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"MAGEA4 WILD-TYPE"   "MAGEA4 MUTATED" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE"   "MAGEA4 MUTATED" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
  "MAGEA4 MUTATED" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE"   "MAGEA4 MUTATED" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"MAGEA4 WILD-TYPE"   "MAGEA4 MUTATED" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE"   "MAGEA4 MUTATED" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"MAGEA4 WILD-TYPE"   "MAGEA4 MUTATED" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE"   "MAGEA4 MUTATED" "MAGEA4 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"MAGEA4 WILD-TYPE"   "MAGEA4 MUTATED" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE"   "MAGEA4 MUTATED" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
  "MAGEA4 MUTATED" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE"   "MAGEA4 MUTATED" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"MAGEA4 WILD-TYPE"   "MAGEA4 MUTATED" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE"   "MAGEA4 MUTATED" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"MAGEA4 WILD-TYPE"   "MAGEA4 MUTATED" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
[1] "hr=" "1.4"
D121V2, continuous
                  vv
clus               DISTANT METASTASIS PRIMARY TUMOR
  MAGEA4 MUTATED                    3             0
  MAGEA4 WILD-TYPE                 19             1
                  vv
clus               REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  MAGEA4 MUTATED                                                                                          2
  MAGEA4 WILD-TYPE                                                                                       30
                  vv
clus               REGIONAL LYMPH NODE
  MAGEA4 MUTATED                     3
  MAGEA4 WILD-TYPE                 101
D121V3, multiclass
                                                                                          clus
vv                                                                                         MAGEA4 MUTATED
  DISTANT METASTASIS                                                                                    3
  PRIMARY TUMOR                                                                                         0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              2
  REGIONAL LYMPH NODE                                                                                   3
                                                                                          clus
vv                                                                                         MAGEA4 WILD-TYPE
  DISTANT METASTASIS                                                                                     19
  PRIMARY TUMOR                                                                                           1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               30
  REGIONAL LYMPH NODE                                                                                   101
D121V4, binary
                  cls
clus                0  1
  MAGEA4 MUTATED    2  6
  MAGEA4 WILD-TYPE 58 93
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEA4 MUTATED      2    6
  MAGEA4 WILD-TYPE   58   93
        clus
vv       MAGEA4 MUTATED MAGEA4 WILD-TYPE
  FEMALE              2               58
  MALE                6               93
                  vv
clus                M0  M1 M1A M1B M1C
  MAGEA4 MUTATED     6   0   0   0   1
  MAGEA4 WILD-TYPE 132   2   1   2   1
D121V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2A N2B N2C N3 NX
  MAGEA4 MUTATED    6  0   1   0   0   0   0  0  0
  MAGEA4 WILD-TYPE 81  2   6  15   4  10   5 14  2
D121V6, multiclass
D121V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  MAGEA4 MUTATED             0       1        1        0        1         1
  MAGEA4 WILD-TYPE           3      16        9       12       17         6
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  MAGEA4 MUTATED           1         0         0          0          1
  MAGEA4 WILD-TYPE         8         7         7          6         16
                  vv
clus               STAGE IIIC STAGE IV
  MAGEA4 MUTATED            0        1
  MAGEA4 WILD-TYPE         21        4
D121V8, multiclass

Clustering(122) Variable = DGAT2L6 MUTATION ANALYSIS
D122V1, survival
                   sevent
clus2                0  1
  DGAT2L6 MUTATED    5  3
  DGAT2L6 WILD-TYPE 68 82
  DGAT2L6 MUTATED DGAT2L6 WILD-TYPE 
                8               150 
  DGAT2L6 MUTATED DGAT2L6 WILD-TYPE 
                3                82 
$`DGAT2L6 MUTATED`
TCGA-D9-A1JW TCGA-DA-A1HY TCGA-EE-A182 TCGA-EE-A29D TCGA-EE-A29M TCGA-EE-A29S 
        2.70       117.17        14.70        13.97        44.35        55.89 
TCGA-EE-A2MJ TCGA-EE-A2MP 
       96.23       248.61 

$`DGAT2L6 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I0 
      148.31        49.74         6.38        48.89        36.03        20.38 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
      194.83       176.55        35.93       107.34        61.18        53.92 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       65.92        23.44        68.09        28.60        10.49       215.44 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 
       15.68        29.82         8.65        33.73        26.86         4.93 
TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29E 
      109.64        78.87       168.26        63.32        47.84        39.62 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R 
       32.19         2.56        18.58        56.42        37.35        14.47 
TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
      345.96        25.87        17.92        46.82        78.94        24.43 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE 
       39.25        58.75        47.54        43.23       314.53       135.91 
TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM 
      182.01        22.55        89.33        54.71        55.00        75.48 
TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT 
       90.94       101.95        13.87        14.30        55.59        19.56 
TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC 
       67.13        21.67       129.24        28.80        19.76        61.51 
TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MK 
       47.28       103.27       103.17        16.96       204.62       144.76 
TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS 
      203.01       167.87        47.54        43.23       103.56       136.44 
TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD 
       41.59        53.26         4.24       122.73        25.84         3.68 
TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F 
       26.73        13.81        23.47       138.77        12.59        26.37 
TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW 
        6.41       131.08        44.05        79.99        80.32       216.92 
TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 
       48.59       228.59       202.62        20.91        28.08         7.76 
TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF 
       27.68        48.85       357.37        53.52        40.27        15.45 
TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP 
        9.70        32.71        47.38        23.93       101.26        74.73 
TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW 
      133.55        11.41       148.77        53.16        26.56        49.48 
TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 
       27.06        27.02         0.20        76.41       120.46       117.93 
TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       84.72        10.09        64.41        62.76        32.48        39.58 

  DGAT2L6 MUTATED DGAT2L6 WILD-TYPE 
              2.7               0.2 
  DGAT2L6 MUTATED DGAT2L6 WILD-TYPE 
           248.61            357.37 
  DGAT2L6 MUTATED DGAT2L6 WILD-TYPE 
            50.12             47.54 
[1] "2.7 - 248.6 (50.1)" "0.2 - 357.4 (47.5)"
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
  "DGAT2L6 MUTATED" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
  "DGAT2L6 MUTATED" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE"   "DGAT2L6 MUTATED" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE"   "DGAT2L6 MUTATED" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE"   "DGAT2L6 MUTATED" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE"   "DGAT2L6 MUTATED" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE"   "DGAT2L6 MUTATED" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
  "DGAT2L6 MUTATED" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
  "DGAT2L6 MUTATED" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
  "DGAT2L6 MUTATED" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE"   "DGAT2L6 MUTATED" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE"   "DGAT2L6 MUTATED" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE"   "DGAT2L6 MUTATED" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE"   "DGAT2L6 MUTATED" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE"   "DGAT2L6 MUTATED" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
  "DGAT2L6 MUTATED" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
  "DGAT2L6 MUTATED" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
  "DGAT2L6 MUTATED" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE"   "DGAT2L6 MUTATED" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE"   "DGAT2L6 MUTATED" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE"   "DGAT2L6 MUTATED" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE"   "DGAT2L6 MUTATED" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE"   "DGAT2L6 MUTATED" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
  "DGAT2L6 MUTATED" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"DGAT2L6 WILD-TYPE" "DGAT2L6 WILD-TYPE" 
[1] "hr=" "1.6"
D122V2, continuous
                   vv
clus                DISTANT METASTASIS PRIMARY TUMOR
  DGAT2L6 MUTATED                    1             1
  DGAT2L6 WILD-TYPE                 21             0
                   vv
clus                REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  DGAT2L6 MUTATED                                                                                          0
  DGAT2L6 WILD-TYPE                                                                                       32
                   vv
clus                REGIONAL LYMPH NODE
  DGAT2L6 MUTATED                     6
  DGAT2L6 WILD-TYPE                  98
D122V3, multiclass
                                                                                          clus
vv                                                                                         DGAT2L6 MUTATED
  DISTANT METASTASIS                                                                                     1
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               0
  REGIONAL LYMPH NODE                                                                                    6
                                                                                          clus
vv                                                                                         DGAT2L6 WILD-TYPE
  DISTANT METASTASIS                                                                                      21
  PRIMARY TUMOR                                                                                            0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                32
  REGIONAL LYMPH NODE                                                                                     98
D122V4, binary
                   cls
clus                 0  1
  DGAT2L6 MUTATED    3  5
  DGAT2L6 WILD-TYPE 57 94
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DGAT2L6 MUTATED      3    5
  DGAT2L6 WILD-TYPE   57   94
        clus
vv       DGAT2L6 MUTATED DGAT2L6 WILD-TYPE
  FEMALE               3                57
  MALE                 5                94
                   vv
clus                 M0  M1 M1A M1B M1C
  DGAT2L6 MUTATED     8   0   0   0   0
  DGAT2L6 WILD-TYPE 130   2   1   2   2
D122V5, multiclass
                   vv
clus                N0 N1 N1A N1B N2A N2B N2C N3 NX
  DGAT2L6 MUTATED    4  0   0   2   1   0   0  1  0
  DGAT2L6 WILD-TYPE 83  2   7  13   3  10   5 13  2
D122V6, multiclass
D122V7, continuous
                   vv
clus                I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  DGAT2L6 MUTATED             0       1        0        1        1         1
  DGAT2L6 WILD-TYPE           3      16       10       11       17         6
                   vv
clus                STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  DGAT2L6 MUTATED           0         0         0          0          0
  DGAT2L6 WILD-TYPE         9         7         7          6         17
                   vv
clus                STAGE IIIC STAGE IV
  DGAT2L6 MUTATED            3        0
  DGAT2L6 WILD-TYPE         18        5
D122V8, multiclass

Clustering(123) Variable = RGS18 MUTATION ANALYSIS
D123V1, survival
                 sevent
clus2              0  1
  RGS18 MUTATED    4  3
  RGS18 WILD-TYPE 69 82
  RGS18 MUTATED RGS18 WILD-TYPE 
              7             151 
  RGS18 MUTATED RGS18 WILD-TYPE 
              3              82 
$`RGS18 MUTATED`
TCGA-DA-A1I4 TCGA-EE-A2A1 TCGA-EE-A2GC TCGA-EE-A2GJ TCGA-EE-A2GP TCGA-FS-A1ZS 
       35.93        78.94        43.23        89.33        13.87       148.77 
TCGA-GN-A266 
       10.09 

$`RGS18 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW 
      148.31        49.74         2.70         6.38        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I5 TCGA-DA-A1I7 
      117.17        20.38       194.83       176.55       107.34        61.18 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       53.92        65.92        23.44        68.09        28.60        10.49 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 
      215.44        15.68        29.82         8.65        33.73        14.70 
TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A 
       26.86         4.93       109.64        78.87       168.26        63.32 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M 
       47.84        13.97        39.62        32.19         2.56        44.35 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T 
       18.58        56.42        37.35        14.47        55.89       345.96 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
       25.87        17.92        46.82        24.43        39.25        58.75 
TCGA-EE-A2GB TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GK 
       47.54       314.53       135.91       182.01        22.55        54.71 
TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GR TCGA-EE-A2GS 
       55.00        75.48        90.94       101.95        14.30        55.59 
TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 
       19.56        67.13        21.67       129.24        28.80        19.76 
TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI 
       61.51        47.28       103.27       103.17        16.96       204.62 
TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP 
       96.23       144.76       203.01       167.87        47.54       248.61 
TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA 
       43.23       103.56       136.44        41.59        53.26         4.24 
TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG 
      122.73        25.84         3.68        26.73        13.81        23.47 
TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N 
      138.77        12.59        26.37         6.41       131.08        44.05 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 
       79.99        80.32       216.92        48.59       228.59       202.62 
TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC 
       20.91        28.08         7.76        27.68        48.85       357.37 
TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ 
       53.52        40.27        15.45         9.70        32.71        47.38 
TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZT 
       23.93       101.26        74.73       133.55        11.41        53.16 
TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 
       26.56        49.48        27.06        27.02         0.20        76.41 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A 
      120.46       117.93        84.72        64.41        62.76        32.48 
TCGA-GN-A26D 
       39.58 

  RGS18 MUTATED RGS18 WILD-TYPE 
          10.09            0.20 
  RGS18 MUTATED RGS18 WILD-TYPE 
         148.77          357.37 
  RGS18 MUTATED RGS18 WILD-TYPE 
          43.23           47.54 
[1] "10.1 - 148.8 (43.2)" "0.2 - 357.4 (47.5)" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
  "RGS18 MUTATED" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
  "RGS18 MUTATED" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"RGS18 WILD-TYPE"   "RGS18 MUTATED" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE"   "RGS18 MUTATED" "RGS18 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
  "RGS18 MUTATED" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE"   "RGS18 MUTATED" "RGS18 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"RGS18 WILD-TYPE"   "RGS18 MUTATED" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
  "RGS18 MUTATED" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
  "RGS18 MUTATED" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"RGS18 WILD-TYPE"   "RGS18 MUTATED" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE"   "RGS18 MUTATED" "RGS18 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
  "RGS18 MUTATED" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE"   "RGS18 MUTATED" "RGS18 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"RGS18 WILD-TYPE"   "RGS18 MUTATED" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-D3-A1Q1      TCGA-D3-A1Q5      TCGA-D3-A1Q6      TCGA-D3-A1Q7 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-D3-A1Q8      TCGA-D3-A1Q9      TCGA-D3-A2J6      TCGA-D3-A2J8 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-D3-A2J9      TCGA-D3-A2JD      TCGA-D3-A2JF      TCGA-D3-A2JK 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-D3-A3C6      TCGA-D3-A3CC      TCGA-D3-A3CE      TCGA-D3-A3CF 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-D3-A3MO      TCGA-D3-A3MV      TCGA-D9-A148      TCGA-D9-A149 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-D9-A1JW      TCGA-D9-A1JX      TCGA-DA-A1HV      TCGA-DA-A1HW 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-DA-A1HY      TCGA-DA-A1I0      TCGA-DA-A1I1      TCGA-DA-A1I2 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-DA-A1I4      TCGA-DA-A1I5      TCGA-DA-A1I7      TCGA-DA-A1I8 
  "RGS18 MUTATED" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-DA-A1IA      TCGA-DA-A1IB      TCGA-DA-A1IC      TCGA-DA-A3F2 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-DA-A3F3      TCGA-DA-A3F5      TCGA-DA-A3F8      TCGA-EE-A17X 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A17Z      TCGA-EE-A181      TCGA-EE-A182      TCGA-EE-A183 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A185      TCGA-EE-A20B      TCGA-EE-A20F      TCGA-EE-A20H 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A29A      TCGA-EE-A29C      TCGA-EE-A29D      TCGA-EE-A29E 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A29H      TCGA-EE-A29L      TCGA-EE-A29M      TCGA-EE-A29N 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A29P      TCGA-EE-A29Q      TCGA-EE-A29R      TCGA-EE-A29S 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A29T      TCGA-EE-A29V      TCGA-EE-A29X      TCGA-EE-A2A0 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A2A1      TCGA-EE-A2A2      TCGA-EE-A2A5      TCGA-EE-A2A6 
  "RGS18 MUTATED" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A2GB      TCGA-EE-A2GC      TCGA-EE-A2GD      TCGA-EE-A2GE 
"RGS18 WILD-TYPE"   "RGS18 MUTATED" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A2GH      TCGA-EE-A2GI      TCGA-EE-A2GJ      TCGA-EE-A2GK 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE"   "RGS18 MUTATED" "RGS18 WILD-TYPE" 
     TCGA-EE-A2GL      TCGA-EE-A2GM      TCGA-EE-A2GN      TCGA-EE-A2GO 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A2GP      TCGA-EE-A2GR      TCGA-EE-A2GS      TCGA-EE-A2GT 
  "RGS18 MUTATED" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A2GU      TCGA-EE-A2M5      TCGA-EE-A2M6      TCGA-EE-A2M7 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A2M8      TCGA-EE-A2MC      TCGA-EE-A2MD      TCGA-EE-A2ME 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A2MG      TCGA-EE-A2MH      TCGA-EE-A2MI      TCGA-EE-A2MJ 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A2MK      TCGA-EE-A2ML      TCGA-EE-A2MM      TCGA-EE-A2MN 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A2MP      TCGA-EE-A2MQ      TCGA-EE-A2MR      TCGA-EE-A2MS 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A2MT      TCGA-EE-A2MU      TCGA-EE-A3AA      TCGA-EE-A3AB 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A3AC      TCGA-EE-A3AD      TCGA-EE-A3AE      TCGA-EE-A3AF 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-EE-A3AG      TCGA-EE-A3AH      TCGA-ER-A19D      TCGA-ER-A19F 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-ER-A19J      TCGA-ER-A19L      TCGA-ER-A19N      TCGA-ER-A1A1 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-ER-A3ET      TCGA-FS-A1YW      TCGA-FS-A1YX      TCGA-FS-A1YY 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-FS-A1Z0      TCGA-FS-A1Z3      TCGA-FS-A1Z4      TCGA-FS-A1Z7 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-FS-A1ZA      TCGA-FS-A1ZB      TCGA-FS-A1ZC      TCGA-FS-A1ZD 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-FS-A1ZE      TCGA-FS-A1ZF      TCGA-FS-A1ZG      TCGA-FS-A1ZH 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-FS-A1ZJ      TCGA-FS-A1ZK      TCGA-FS-A1ZM      TCGA-FS-A1ZP 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-FS-A1ZQ      TCGA-FS-A1ZR      TCGA-FS-A1ZS      TCGA-FS-A1ZT 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE"   "RGS18 MUTATED" "RGS18 WILD-TYPE" 
     TCGA-FS-A1ZU      TCGA-FS-A1ZW      TCGA-FS-A1ZY      TCGA-FS-A1ZZ 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-FW-A3I3      TCGA-GN-A261      TCGA-GN-A262      TCGA-GN-A264 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-GN-A265      TCGA-GN-A266      TCGA-GN-A267      TCGA-GN-A268 
"RGS18 WILD-TYPE"   "RGS18 MUTATED" "RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
     TCGA-GN-A26A      TCGA-GN-A26D 
"RGS18 WILD-TYPE" "RGS18 WILD-TYPE" 
[1] "hr=" "1.1"
D123V2, continuous
                 vv
clus              DISTANT METASTASIS PRIMARY TUMOR
  RGS18 MUTATED                    0             0
  RGS18 WILD-TYPE                 22             1
                 vv
clus              REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  RGS18 MUTATED                                                                                          3
  RGS18 WILD-TYPE                                                                                       29
                 vv
clus              REGIONAL LYMPH NODE
  RGS18 MUTATED                     4
  RGS18 WILD-TYPE                 100
D123V3, multiclass
                                                                                          clus
vv                                                                                         RGS18 MUTATED
  DISTANT METASTASIS                                                                                   0
  PRIMARY TUMOR                                                                                        0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             3
  REGIONAL LYMPH NODE                                                                                  4
                                                                                          clus
vv                                                                                         RGS18 WILD-TYPE
  DISTANT METASTASIS                                                                                    22
  PRIMARY TUMOR                                                                                          1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              29
  REGIONAL LYMPH NODE                                                                                  100
D123V4, binary
                 cls
clus               0  1
  RGS18 MUTATED    0  7
  RGS18 WILD-TYPE 60 92
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RGS18 MUTATED      0    7
  RGS18 WILD-TYPE   60   92
        clus
vv       RGS18 MUTATED RGS18 WILD-TYPE
  FEMALE             0              60
  MALE               7              92
                 vv
clus               M0  M1 M1A M1B M1C
  RGS18 MUTATED     6   0   0   0   0
  RGS18 WILD-TYPE 132   2   1   2   2
D123V5, multiclass
                 vv
clus              N0 N1 N1A N1B N2A N2B N2C N3 NX
  RGS18 MUTATED    4  0   1   0   0   1   0  0  0
  RGS18 WILD-TYPE 83  2   6  15   4   9   5 14  2
D123V6, multiclass
D123V7, continuous
                 vv
clus              I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  RGS18 MUTATED             0       0        1        1        1         0
  RGS18 WILD-TYPE           3      17        9       11       17         7
                 vv
clus              STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  RGS18 MUTATED           1         0         0          0          2
  RGS18 WILD-TYPE         8         7         7          6         15
                 vv
clus              STAGE IIIC STAGE IV
  RGS18 MUTATED            0        0
  RGS18 WILD-TYPE         21        5
D123V8, multiclass

Clustering(124) Variable = TSGA13 MUTATION ANALYSIS
D124V1, survival
                  sevent
clus2               0  1
  TSGA13 MUTATED    5  1
  TSGA13 WILD-TYPE 68 84
  TSGA13 MUTATED TSGA13 WILD-TYPE 
               6              152 
  TSGA13 MUTATED TSGA13 WILD-TYPE 
               1               84 
$`TSGA13 MUTATED`
TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GR TCGA-EE-A2M6 TCGA-EE-A3AA TCGA-FS-A1ZJ 
      182.01        22.55        14.30       129.24         4.24        47.38 

$`TSGA13 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW 
      148.31        49.74         2.70         6.38        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 
       61.18        53.92        65.92        23.44        68.09        28.60 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 
       10.49       215.44        15.68        29.82         8.65        33.73 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H 
       14.70        26.86         4.93       109.64        78.87       168.26 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L 
       63.32        47.84        13.97        39.62        32.19         2.56 
TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S 
       44.35        18.58        56.42        37.35        14.47        55.89 
TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
      345.96        25.87        17.92        46.82        78.94        24.43 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE 
       39.25        58.75        47.54        43.23       314.53       135.91 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO 
       89.33        54.71        55.00        75.48        90.94       101.95 
TCGA-EE-A2GP TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M7 
       13.87        55.59        19.56        67.13        21.67        28.80 
TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH 
       19.76        61.51        47.28       103.27       103.17        16.96 
TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN 
      204.62        96.23       144.76       203.01       167.87        47.54 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU 
      248.61        43.23       103.56       136.44        41.59        53.26 
TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG 
      122.73        25.84         3.68        26.73        13.81        23.47 
TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N 
      138.77        12.59        26.37         6.41       131.08        44.05 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 
       79.99        80.32       216.92        48.59       228.59       202.62 
TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC 
       20.91        28.08         7.76        27.68        48.85       357.37 
TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZK 
       53.52        40.27        15.45         9.70        32.71        23.93 
TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT 
      101.26        74.73       133.55        11.41       148.77        53.16 
TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 TCGA-GN-A261 
       26.56        49.48        27.06        27.02         0.20        76.41 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 
      120.46       117.93        84.72        10.09        64.41        62.76 
TCGA-GN-A26A TCGA-GN-A26D 
       32.48        39.58 

  TSGA13 MUTATED TSGA13 WILD-TYPE 
            4.24             0.20 
  TSGA13 MUTATED TSGA13 WILD-TYPE 
          182.01           357.37 
  TSGA13 MUTATED TSGA13 WILD-TYPE 
          34.965           47.690 
[1] "4.2 - 182.0 (35.0)" "0.2 - 357.4 (47.7)"
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
  "TSGA13 MUTATED"   "TSGA13 MUTATED" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"TSGA13 WILD-TYPE"   "TSGA13 MUTATED" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE"   "TSGA13 MUTATED" "TSGA13 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE"   "TSGA13 MUTATED" "TSGA13 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
  "TSGA13 MUTATED" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
  "TSGA13 MUTATED"   "TSGA13 MUTATED" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"TSGA13 WILD-TYPE"   "TSGA13 MUTATED" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE"   "TSGA13 MUTATED" "TSGA13 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE"   "TSGA13 MUTATED" "TSGA13 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
  "TSGA13 MUTATED" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-D3-A1Q1       TCGA-D3-A1Q5       TCGA-D3-A1Q6       TCGA-D3-A1Q7 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-D3-A1Q8       TCGA-D3-A1Q9       TCGA-D3-A2J6       TCGA-D3-A2J8 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-D3-A2J9       TCGA-D3-A2JD       TCGA-D3-A2JF       TCGA-D3-A2JK 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-D3-A3C6       TCGA-D3-A3CC       TCGA-D3-A3CE       TCGA-D3-A3CF 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-D3-A3MO       TCGA-D3-A3MV       TCGA-D9-A148       TCGA-D9-A149 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-D9-A1JW       TCGA-D9-A1JX       TCGA-DA-A1HV       TCGA-DA-A1HW 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-DA-A1HY       TCGA-DA-A1I0       TCGA-DA-A1I1       TCGA-DA-A1I2 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-DA-A1I4       TCGA-DA-A1I5       TCGA-DA-A1I7       TCGA-DA-A1I8 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-DA-A1IA       TCGA-DA-A1IB       TCGA-DA-A1IC       TCGA-DA-A3F2 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-DA-A3F3       TCGA-DA-A3F5       TCGA-DA-A3F8       TCGA-EE-A17X 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A17Z       TCGA-EE-A181       TCGA-EE-A182       TCGA-EE-A183 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A185       TCGA-EE-A20B       TCGA-EE-A20F       TCGA-EE-A20H 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A29A       TCGA-EE-A29C       TCGA-EE-A29D       TCGA-EE-A29E 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A29H       TCGA-EE-A29L       TCGA-EE-A29M       TCGA-EE-A29N 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A29P       TCGA-EE-A29Q       TCGA-EE-A29R       TCGA-EE-A29S 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A29T       TCGA-EE-A29V       TCGA-EE-A29X       TCGA-EE-A2A0 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A2A1       TCGA-EE-A2A2       TCGA-EE-A2A5       TCGA-EE-A2A6 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A2GB       TCGA-EE-A2GC       TCGA-EE-A2GD       TCGA-EE-A2GE 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A2GH       TCGA-EE-A2GI       TCGA-EE-A2GJ       TCGA-EE-A2GK 
  "TSGA13 MUTATED"   "TSGA13 MUTATED" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A2GL       TCGA-EE-A2GM       TCGA-EE-A2GN       TCGA-EE-A2GO 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A2GP       TCGA-EE-A2GR       TCGA-EE-A2GS       TCGA-EE-A2GT 
"TSGA13 WILD-TYPE"   "TSGA13 MUTATED" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A2GU       TCGA-EE-A2M5       TCGA-EE-A2M6       TCGA-EE-A2M7 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE"   "TSGA13 MUTATED" "TSGA13 WILD-TYPE" 
      TCGA-EE-A2M8       TCGA-EE-A2MC       TCGA-EE-A2MD       TCGA-EE-A2ME 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A2MG       TCGA-EE-A2MH       TCGA-EE-A2MI       TCGA-EE-A2MJ 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A2MK       TCGA-EE-A2ML       TCGA-EE-A2MM       TCGA-EE-A2MN 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A2MP       TCGA-EE-A2MQ       TCGA-EE-A2MR       TCGA-EE-A2MS 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A2MT       TCGA-EE-A2MU       TCGA-EE-A3AA       TCGA-EE-A3AB 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE"   "TSGA13 MUTATED" "TSGA13 WILD-TYPE" 
      TCGA-EE-A3AC       TCGA-EE-A3AD       TCGA-EE-A3AE       TCGA-EE-A3AF 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-EE-A3AG       TCGA-EE-A3AH       TCGA-ER-A19D       TCGA-ER-A19F 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-ER-A19J       TCGA-ER-A19L       TCGA-ER-A19N       TCGA-ER-A1A1 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-ER-A3ET       TCGA-FS-A1YW       TCGA-FS-A1YX       TCGA-FS-A1YY 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-FS-A1Z0       TCGA-FS-A1Z3       TCGA-FS-A1Z4       TCGA-FS-A1Z7 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-FS-A1ZA       TCGA-FS-A1ZB       TCGA-FS-A1ZC       TCGA-FS-A1ZD 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-FS-A1ZE       TCGA-FS-A1ZF       TCGA-FS-A1ZG       TCGA-FS-A1ZH 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-FS-A1ZJ       TCGA-FS-A1ZK       TCGA-FS-A1ZM       TCGA-FS-A1ZP 
  "TSGA13 MUTATED" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-FS-A1ZQ       TCGA-FS-A1ZR       TCGA-FS-A1ZS       TCGA-FS-A1ZT 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-FS-A1ZU       TCGA-FS-A1ZW       TCGA-FS-A1ZY       TCGA-FS-A1ZZ 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-FW-A3I3       TCGA-GN-A261       TCGA-GN-A262       TCGA-GN-A264 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-GN-A265       TCGA-GN-A266       TCGA-GN-A267       TCGA-GN-A268 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
      TCGA-GN-A26A       TCGA-GN-A26D 
"TSGA13 WILD-TYPE" "TSGA13 WILD-TYPE" 
[1] "hr=" "3"  
D124V2, continuous
                  vv
clus               DISTANT METASTASIS PRIMARY TUMOR
  TSGA13 MUTATED                    0             0
  TSGA13 WILD-TYPE                 22             1
                  vv
clus               REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  TSGA13 MUTATED                                                                                          1
  TSGA13 WILD-TYPE                                                                                       31
                  vv
clus               REGIONAL LYMPH NODE
  TSGA13 MUTATED                     5
  TSGA13 WILD-TYPE                  99
D124V3, multiclass
                                                                                          clus
vv                                                                                         TSGA13 MUTATED
  DISTANT METASTASIS                                                                                    0
  PRIMARY TUMOR                                                                                         0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)              1
  REGIONAL LYMPH NODE                                                                                   5
                                                                                          clus
vv                                                                                         TSGA13 WILD-TYPE
  DISTANT METASTASIS                                                                                     22
  PRIMARY TUMOR                                                                                           1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               31
  REGIONAL LYMPH NODE                                                                                    99
D124V4, binary
                  cls
clus                0  1
  TSGA13 MUTATED    1  5
  TSGA13 WILD-TYPE 59 94
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TSGA13 MUTATED      1    5
  TSGA13 WILD-TYPE   59   94
        clus
vv       TSGA13 MUTATED TSGA13 WILD-TYPE
  FEMALE              1               59
  MALE                5               94
                  vv
clus                M0  M1 M1A M1B M1C
  TSGA13 MUTATED     5   0   0   0   0
  TSGA13 WILD-TYPE 133   2   1   2   2
D124V5, multiclass
                  vv
clus               N0 N1 N1A N1B N2A N2B N2C N3 NX
  TSGA13 MUTATED    5  0   0   0   0   0   0  0  0
  TSGA13 WILD-TYPE 82  2   7  15   4  10   5 14  2
D124V6, multiclass
D124V7, continuous
                  vv
clus               I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  TSGA13 MUTATED             0       3        1        0        1         0
  TSGA13 WILD-TYPE           3      14        9       12       17         7
                  vv
clus               STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  TSGA13 MUTATED           0         0         0          0          0
  TSGA13 WILD-TYPE         9         7         7          6         17
                  vv
clus               STAGE IIIC STAGE IV
  TSGA13 MUTATED            0        0
  TSGA13 WILD-TYPE         21        5
D124V8, multiclass

Clustering(125) Variable = OPN5 MUTATION ANALYSIS
D125V1, survival
                sevent
clus2             0  1
  OPN5 MUTATED    4  1
  OPN5 WILD-TYPE 69 84
  OPN5 MUTATED OPN5 WILD-TYPE 
             5            153 
  OPN5 MUTATED OPN5 WILD-TYPE 
             1             84 
$`OPN5 MUTATED`
TCGA-DA-A1I7 TCGA-EE-A181 TCGA-EE-A29E TCGA-EE-A2GH TCGA-EE-A3AG 
       61.18        33.73        39.62       182.01        23.47 

$`OPN5 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JK 
       43.40        65.49        23.77        11.87        48.76        12.10 
TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV 
       58.03        71.24        60.23        24.53         9.30        21.47 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW 
      148.31        49.74         2.70         6.38        48.89        36.03 
TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
      117.17        20.38       194.83       176.55        35.93       107.34 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 
       53.92        65.92        23.44        68.09        28.60        10.49 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 
      215.44        15.68        29.82         8.65        14.70        26.86 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.93       109.64        78.87       168.26        63.32        47.84 
TCGA-EE-A29D TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
       13.97        32.19         2.56        44.35        18.58        56.42 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X 
       37.35        14.47        55.89       345.96        25.87        17.92 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB 
       46.82        78.94        24.43        39.25        58.75        47.54 
TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK 
       43.23       314.53       135.91        22.55        89.33        54.71 
TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR 
       55.00        75.48        90.94       101.95        13.87        14.30 
TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 
       55.59        19.56        67.13        21.67       129.24        28.80 
TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH 
       19.76        61.51        47.28       103.27       103.17        16.96 
TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN 
      204.62        96.23       144.76       203.01       167.87        47.54 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU 
      248.61        43.23       103.56       136.44        41.59        53.26 
TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF 
        4.24       122.73        25.84         3.68        26.73        13.81 
TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N 
      138.77        12.59        26.37         6.41       131.08        44.05 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 
       79.99        80.32       216.92        48.59       228.59       202.62 
TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC 
       20.91        28.08         7.76        27.68        48.85       357.37 
TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ 
       53.52        40.27        15.45         9.70        32.71        47.38 
TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS 
       23.93       101.26        74.73       133.55        11.41       148.77 
TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 
       53.16        26.56        49.48        27.06        27.02         0.20 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 
       76.41       120.46       117.93        84.72        10.09        64.41 
TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       62.76        32.48        39.58 

  OPN5 MUTATED OPN5 WILD-TYPE 
         23.47           0.20 
  OPN5 MUTATED OPN5 WILD-TYPE 
        182.01         357.37 
  OPN5 MUTATED OPN5 WILD-TYPE 
         39.62          47.54 
[1] "23.5 - 182.0 (39.6)" "0.2 - 357.4 (47.5)" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE"   "OPN5 MUTATED" "OPN5 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"OPN5 WILD-TYPE"   "OPN5 MUTATED" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE"   "OPN5 MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
  "OPN5 MUTATED" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
  "OPN5 MUTATED" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE"   "OPN5 MUTATED" "OPN5 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"OPN5 WILD-TYPE"   "OPN5 MUTATED" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE"   "OPN5 MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
  "OPN5 MUTATED" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
  "OPN5 MUTATED" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-D3-A1Q1     TCGA-D3-A1Q5     TCGA-D3-A1Q6     TCGA-D3-A1Q7 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-D3-A1Q8     TCGA-D3-A1Q9     TCGA-D3-A2J6     TCGA-D3-A2J8 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-D3-A2J9     TCGA-D3-A2JD     TCGA-D3-A2JF     TCGA-D3-A2JK 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-D3-A3C6     TCGA-D3-A3CC     TCGA-D3-A3CE     TCGA-D3-A3CF 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-D3-A3MO     TCGA-D3-A3MV     TCGA-D9-A148     TCGA-D9-A149 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-D9-A1JW     TCGA-D9-A1JX     TCGA-DA-A1HV     TCGA-DA-A1HW 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-DA-A1HY     TCGA-DA-A1I0     TCGA-DA-A1I1     TCGA-DA-A1I2 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-DA-A1I4     TCGA-DA-A1I5     TCGA-DA-A1I7     TCGA-DA-A1I8 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE"   "OPN5 MUTATED" "OPN5 WILD-TYPE" 
    TCGA-DA-A1IA     TCGA-DA-A1IB     TCGA-DA-A1IC     TCGA-DA-A3F2 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-DA-A3F3     TCGA-DA-A3F5     TCGA-DA-A3F8     TCGA-EE-A17X 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A17Z     TCGA-EE-A181     TCGA-EE-A182     TCGA-EE-A183 
"OPN5 WILD-TYPE"   "OPN5 MUTATED" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A185     TCGA-EE-A20B     TCGA-EE-A20F     TCGA-EE-A20H 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A29A     TCGA-EE-A29C     TCGA-EE-A29D     TCGA-EE-A29E 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE"   "OPN5 MUTATED" 
    TCGA-EE-A29H     TCGA-EE-A29L     TCGA-EE-A29M     TCGA-EE-A29N 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A29P     TCGA-EE-A29Q     TCGA-EE-A29R     TCGA-EE-A29S 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A29T     TCGA-EE-A29V     TCGA-EE-A29X     TCGA-EE-A2A0 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A2A1     TCGA-EE-A2A2     TCGA-EE-A2A5     TCGA-EE-A2A6 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A2GB     TCGA-EE-A2GC     TCGA-EE-A2GD     TCGA-EE-A2GE 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A2GH     TCGA-EE-A2GI     TCGA-EE-A2GJ     TCGA-EE-A2GK 
  "OPN5 MUTATED" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A2GL     TCGA-EE-A2GM     TCGA-EE-A2GN     TCGA-EE-A2GO 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A2GP     TCGA-EE-A2GR     TCGA-EE-A2GS     TCGA-EE-A2GT 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A2GU     TCGA-EE-A2M5     TCGA-EE-A2M6     TCGA-EE-A2M7 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A2M8     TCGA-EE-A2MC     TCGA-EE-A2MD     TCGA-EE-A2ME 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A2MG     TCGA-EE-A2MH     TCGA-EE-A2MI     TCGA-EE-A2MJ 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A2MK     TCGA-EE-A2ML     TCGA-EE-A2MM     TCGA-EE-A2MN 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A2MP     TCGA-EE-A2MQ     TCGA-EE-A2MR     TCGA-EE-A2MS 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A2MT     TCGA-EE-A2MU     TCGA-EE-A3AA     TCGA-EE-A3AB 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A3AC     TCGA-EE-A3AD     TCGA-EE-A3AE     TCGA-EE-A3AF 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-EE-A3AG     TCGA-EE-A3AH     TCGA-ER-A19D     TCGA-ER-A19F 
  "OPN5 MUTATED" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-ER-A19J     TCGA-ER-A19L     TCGA-ER-A19N     TCGA-ER-A1A1 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-ER-A3ET     TCGA-FS-A1YW     TCGA-FS-A1YX     TCGA-FS-A1YY 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-FS-A1Z0     TCGA-FS-A1Z3     TCGA-FS-A1Z4     TCGA-FS-A1Z7 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-FS-A1ZA     TCGA-FS-A1ZB     TCGA-FS-A1ZC     TCGA-FS-A1ZD 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-FS-A1ZE     TCGA-FS-A1ZF     TCGA-FS-A1ZG     TCGA-FS-A1ZH 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-FS-A1ZJ     TCGA-FS-A1ZK     TCGA-FS-A1ZM     TCGA-FS-A1ZP 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-FS-A1ZQ     TCGA-FS-A1ZR     TCGA-FS-A1ZS     TCGA-FS-A1ZT 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-FS-A1ZU     TCGA-FS-A1ZW     TCGA-FS-A1ZY     TCGA-FS-A1ZZ 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-FW-A3I3     TCGA-GN-A261     TCGA-GN-A262     TCGA-GN-A264 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-GN-A265     TCGA-GN-A266     TCGA-GN-A267     TCGA-GN-A268 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
    TCGA-GN-A26A     TCGA-GN-A26D 
"OPN5 WILD-TYPE" "OPN5 WILD-TYPE" 
[1] "hr=" "2.8"
D125V2, continuous
                vv
clus             DISTANT METASTASIS PRIMARY TUMOR
  OPN5 MUTATED                    0             0
  OPN5 WILD-TYPE                 22             1
                vv
clus             REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  OPN5 MUTATED                                                                                          2
  OPN5 WILD-TYPE                                                                                       30
                vv
clus             REGIONAL LYMPH NODE
  OPN5 MUTATED                     3
  OPN5 WILD-TYPE                 101
D125V3, multiclass
                                                                                          clus
vv                                                                                         OPN5 MUTATED
  DISTANT METASTASIS                                                                                  0
  PRIMARY TUMOR                                                                                       0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)            2
  REGIONAL LYMPH NODE                                                                                 3
                                                                                          clus
vv                                                                                         OPN5 WILD-TYPE
  DISTANT METASTASIS                                                                                   22
  PRIMARY TUMOR                                                                                         1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)             30
  REGIONAL LYMPH NODE                                                                                 101
D125V4, binary
                cls
clus              0  1
  OPN5 MUTATED    1  4
  OPN5 WILD-TYPE 59 95
[1] "tbl2"
                cls
clus             [,1] [,2]
  OPN5 MUTATED      1    4
  OPN5 WILD-TYPE   59   95
        clus
vv       OPN5 MUTATED OPN5 WILD-TYPE
  FEMALE            1             59
  MALE              4             95
                vv
clus              M0  M1 M1A M1B M1C
  OPN5 MUTATED     4   0   0   0   0
  OPN5 WILD-TYPE 134   2   1   2   2
D125V5, multiclass
                vv
clus             N0 N1 N1A N1B N2A N2B N2C N3 NX
  OPN5 MUTATED    2  0   0   1   0   1   0  0  0
  OPN5 WILD-TYPE 85  2   7  14   4   9   5 14  2
D125V6, multiclass
D125V7, continuous
                vv
clus             I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  OPN5 MUTATED             0       1        0        0        1         0
  OPN5 WILD-TYPE           3      16       10       12       17         7
                vv
clus             STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  OPN5 MUTATED           0         0         0          0          2          0
  OPN5 WILD-TYPE         9         7         7          6         15         21
                vv
clus             STAGE IV
  OPN5 MUTATED          0
  OPN5 WILD-TYPE        5
D125V8, multiclass

Clustering(126) Variable = SPINK13 MUTATION ANALYSIS
D126V1, survival
                   sevent
clus2                0  1
  SPINK13 MUTATED    1  4
  SPINK13 WILD-TYPE 72 81
  SPINK13 MUTATED SPINK13 WILD-TYPE 
                5               153 
  SPINK13 MUTATED SPINK13 WILD-TYPE 
                4                81 
$`SPINK13 MUTATED`
TCGA-D3-A2JD TCGA-D9-A149 TCGA-EE-A29D TCGA-EE-A2M5 TCGA-EE-A2MJ 
       11.87        49.74        13.97        21.67        96.23 

$`SPINK13 WILD-TYPE`
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1Q9 
       16.57       112.54        71.80       121.22        28.08        31.59 
TCGA-D3-A2J6 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A3C6 
       43.40        65.49        23.77        48.76        12.10        58.03 
TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D9-A148 
       71.24        60.23        24.53         9.30        21.47       148.31 
TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 
        2.70         6.38        48.89        36.03       117.17        20.38 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 
      194.83       176.55        35.93       107.34        61.18        53.92 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 
       65.92        23.44        68.09        28.60        10.49       215.44 
TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 
       15.68        29.82         8.65        33.73        14.70        26.86 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C 
        4.93       109.64        78.87       168.26        63.32        47.84 
TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
       39.62        32.19         2.56        44.35        18.58        56.42 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X 
       37.35        14.47        55.89       345.96        25.87        17.92 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB 
       46.82        78.94        24.43        39.25        58.75        47.54 
TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ 
       43.23       314.53       135.91       182.01        22.55        89.33 
TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP 
       54.71        55.00        75.48        90.94       101.95        13.87 
TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2M7 
       14.30        55.59        19.56        67.13       129.24        28.80 
TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH 
       19.76        61.51        47.28       103.27       103.17        16.96 
TCGA-EE-A2MI TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP 
      204.62       144.76       203.01       167.87        47.54       248.61 
TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA 
       43.23       103.56       136.44        41.59        53.26         4.24 
TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG 
      122.73        25.84         3.68        26.73        13.81        23.47 
TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A19N 
      138.77        12.59        26.37         6.41       131.08        44.05 
TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 
       79.99        80.32       216.92        48.59       228.59       202.62 
TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC 
       20.91        28.08         7.76        27.68        48.85       357.37 
TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ 
       53.52        40.27        15.45         9.70        32.71        47.38 
TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS 
       23.93       101.26        74.73       133.55        11.41       148.77 
TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FW-A3I3 
       53.16        26.56        49.48        27.06        27.02         0.20 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 
       76.41       120.46       117.93        84.72        10.09        64.41 
TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
       62.76        32.48        39.58 

  SPINK13 MUTATED SPINK13 WILD-TYPE 
            11.87              0.20 
  SPINK13 MUTATED SPINK13 WILD-TYPE 
            96.23            357.37 
  SPINK13 MUTATED SPINK13 WILD-TYPE 
            21.67             47.54 
[1] "11.9 - 96.2 (21.7)" "0.2 - 357.4 (47.5)"
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"SPINK13 WILD-TYPE"   "SPINK13 MUTATED" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE"   "SPINK13 MUTATED" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE"   "SPINK13 MUTATED" "SPINK13 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"SPINK13 WILD-TYPE"   "SPINK13 MUTATED" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE"   "SPINK13 MUTATED" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"SPINK13 WILD-TYPE"   "SPINK13 MUTATED" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE"   "SPINK13 MUTATED" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE"   "SPINK13 MUTATED" "SPINK13 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"SPINK13 WILD-TYPE"   "SPINK13 MUTATED" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE"   "SPINK13 MUTATED" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-D3-A1Q1        TCGA-D3-A1Q5        TCGA-D3-A1Q6        TCGA-D3-A1Q7 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-D3-A1Q8        TCGA-D3-A1Q9        TCGA-D3-A2J6        TCGA-D3-A2J8 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-D3-A2J9        TCGA-D3-A2JD        TCGA-D3-A2JF        TCGA-D3-A2JK 
"SPINK13 WILD-TYPE"   "SPINK13 MUTATED" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-D3-A3C6        TCGA-D3-A3CC        TCGA-D3-A3CE        TCGA-D3-A3CF 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-D3-A3MO        TCGA-D3-A3MV        TCGA-D9-A148        TCGA-D9-A149 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE"   "SPINK13 MUTATED" 
       TCGA-D9-A1JW        TCGA-D9-A1JX        TCGA-DA-A1HV        TCGA-DA-A1HW 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-DA-A1HY        TCGA-DA-A1I0        TCGA-DA-A1I1        TCGA-DA-A1I2 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-DA-A1I4        TCGA-DA-A1I5        TCGA-DA-A1I7        TCGA-DA-A1I8 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-DA-A1IA        TCGA-DA-A1IB        TCGA-DA-A1IC        TCGA-DA-A3F2 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-DA-A3F3        TCGA-DA-A3F5        TCGA-DA-A3F8        TCGA-EE-A17X 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A17Z        TCGA-EE-A181        TCGA-EE-A182        TCGA-EE-A183 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A185        TCGA-EE-A20B        TCGA-EE-A20F        TCGA-EE-A20H 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A29A        TCGA-EE-A29C        TCGA-EE-A29D        TCGA-EE-A29E 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE"   "SPINK13 MUTATED" "SPINK13 WILD-TYPE" 
       TCGA-EE-A29H        TCGA-EE-A29L        TCGA-EE-A29M        TCGA-EE-A29N 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A29P        TCGA-EE-A29Q        TCGA-EE-A29R        TCGA-EE-A29S 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A29T        TCGA-EE-A29V        TCGA-EE-A29X        TCGA-EE-A2A0 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A2A1        TCGA-EE-A2A2        TCGA-EE-A2A5        TCGA-EE-A2A6 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A2GB        TCGA-EE-A2GC        TCGA-EE-A2GD        TCGA-EE-A2GE 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A2GH        TCGA-EE-A2GI        TCGA-EE-A2GJ        TCGA-EE-A2GK 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A2GL        TCGA-EE-A2GM        TCGA-EE-A2GN        TCGA-EE-A2GO 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A2GP        TCGA-EE-A2GR        TCGA-EE-A2GS        TCGA-EE-A2GT 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A2GU        TCGA-EE-A2M5        TCGA-EE-A2M6        TCGA-EE-A2M7 
"SPINK13 WILD-TYPE"   "SPINK13 MUTATED" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A2M8        TCGA-EE-A2MC        TCGA-EE-A2MD        TCGA-EE-A2ME 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A2MG        TCGA-EE-A2MH        TCGA-EE-A2MI        TCGA-EE-A2MJ 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE"   "SPINK13 MUTATED" 
       TCGA-EE-A2MK        TCGA-EE-A2ML        TCGA-EE-A2MM        TCGA-EE-A2MN 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A2MP        TCGA-EE-A2MQ        TCGA-EE-A2MR        TCGA-EE-A2MS 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A2MT        TCGA-EE-A2MU        TCGA-EE-A3AA        TCGA-EE-A3AB 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A3AC        TCGA-EE-A3AD        TCGA-EE-A3AE        TCGA-EE-A3AF 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-EE-A3AG        TCGA-EE-A3AH        TCGA-ER-A19D        TCGA-ER-A19F 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-ER-A19J        TCGA-ER-A19L        TCGA-ER-A19N        TCGA-ER-A1A1 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-ER-A3ET        TCGA-FS-A1YW        TCGA-FS-A1YX        TCGA-FS-A1YY 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-FS-A1Z0        TCGA-FS-A1Z3        TCGA-FS-A1Z4        TCGA-FS-A1Z7 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-FS-A1ZA        TCGA-FS-A1ZB        TCGA-FS-A1ZC        TCGA-FS-A1ZD 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-FS-A1ZE        TCGA-FS-A1ZF        TCGA-FS-A1ZG        TCGA-FS-A1ZH 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-FS-A1ZJ        TCGA-FS-A1ZK        TCGA-FS-A1ZM        TCGA-FS-A1ZP 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-FS-A1ZQ        TCGA-FS-A1ZR        TCGA-FS-A1ZS        TCGA-FS-A1ZT 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-FS-A1ZU        TCGA-FS-A1ZW        TCGA-FS-A1ZY        TCGA-FS-A1ZZ 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-FW-A3I3        TCGA-GN-A261        TCGA-GN-A262        TCGA-GN-A264 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-GN-A265        TCGA-GN-A266        TCGA-GN-A267        TCGA-GN-A268 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
       TCGA-GN-A26A        TCGA-GN-A26D 
"SPINK13 WILD-TYPE" "SPINK13 WILD-TYPE" 
[1] "hr=" "2.6"
D126V2, continuous
                   vv
clus                DISTANT METASTASIS PRIMARY TUMOR
  SPINK13 MUTATED                    0             0
  SPINK13 WILD-TYPE                 22             1
                   vv
clus                REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)
  SPINK13 MUTATED                                                                                          1
  SPINK13 WILD-TYPE                                                                                       31
                   vv
clus                REGIONAL LYMPH NODE
  SPINK13 MUTATED                     4
  SPINK13 WILD-TYPE                 100
D126V3, multiclass
                                                                                          clus
vv                                                                                         SPINK13 MUTATED
  DISTANT METASTASIS                                                                                     0
  PRIMARY TUMOR                                                                                          0
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)               1
  REGIONAL LYMPH NODE                                                                                    4
                                                                                          clus
vv                                                                                         SPINK13 WILD-TYPE
  DISTANT METASTASIS                                                                                      22
  PRIMARY TUMOR                                                                                            1
  REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE (INCLUDES SATELLITE AND IN-TRANSIT METASTASIS)                31
  REGIONAL LYMPH NODE                                                                                    100
D126V4, binary
                   cls
clus                 0  1
  SPINK13 MUTATED    1  4
  SPINK13 WILD-TYPE 59 95
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SPINK13 MUTATED      1    4
  SPINK13 WILD-TYPE   59   95
        clus
vv       SPINK13 MUTATED SPINK13 WILD-TYPE
  FEMALE               1                59
  MALE                 4                95
                   vv
clus                 M0  M1 M1A M1B M1C
  SPINK13 MUTATED     5   0   0   0   0
  SPINK13 WILD-TYPE 133   2   1   2   2
D126V5, multiclass
                   vv
clus                N0 N1 N1A N1B N2A N2B N2C N3 NX
  SPINK13 MUTATED    2  0   0   3   0   0   0  0  0
  SPINK13 WILD-TYPE 85  2   7  12   4  10   5 14  2
D126V6, multiclass
D126V7, continuous
                   vv
clus                I OR II NOS STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  SPINK13 MUTATED             0       1        0        0        1         0
  SPINK13 WILD-TYPE           3      16       10       12       17         7
                   vv
clus                STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  SPINK13 MUTATED           0         0         0          0          0
  SPINK13 WILD-TYPE         9         7         7          6         17
                   vv
clus                STAGE IIIC STAGE IV
  SPINK13 MUTATED            2        0
  SPINK13 WILD-TYPE         19        5
D126V8, multiclass
                     V1.D                        V2                        V3 
          "Time to Death"                     "AGE" "PRIMARY.SITE.OF.DISEASE" 
                       V4                        V5                        V6 
                 "GENDER"      "DISTANT.METASTASIS"   "LYMPH.NODE.METASTASIS" 
                       V7                        V8 
        "TUMOR.STAGECODE"   "NEOPLASM.DISEASESTAGE" 
> q(save="no")
