Correlate_Clinical_Cluster_nozzle Execution Log 5:38 PM Thu May 2, '13

Running as user: cgaadm_deadline

Correlate_Clinical_Clusters_onlysig1 cluster label file file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/STAD-TP/3144511/1.GDAC_mergedClustering.Finished/STAD-TP.mergedcluster.txt
Correlate_Clinical_Clusters_onlysig1 clinical info file file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/STAD-TP/3132759/1.GDAC_clinicalDataPicker.Finished/STAD-TP.clin.merged.picked.txt
Correlate_Clinical_Clusters_onlysig1 filter cluster smaller than 3
Correlate_Clinical_Clusters_onlysig1 figure height 5
Correlate_Clinical_Clusters_onlysig1 figure width 9
Correlate_Clinical_Clusters_onlysig1 survival legend position OUT
Correlate_Clinical_Clusters_onlysig1 pvalue cutoff 0.05
Correlate_Clinical_Clusters_onlysig1 qvalue cutoff 0.25
Correlate_Clinical_Clusters_onlysig1 make figure ALL
Correlate_Clinical_Clusters_onlysig1 nozzle ver Nozzle.R1
Correlate_Clinical_Clusters_onlysig1 options AGGREGRATED_CLUSTER
Execution Times:
Submitted: 17:38:30 02-05-13
Completed:
Elapsed: 00 hrs 00 mins 41 secs

step 1. Correlate_Clinical_Clusters_onlysig [id: 397676]

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00335:84
cluster label file file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/STAD-TP/3144511/1.GDAC_mergedClustering.Finished/STAD-TP.mergedcluster.txt
clinical info file file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/STAD-TP/3132759/1.GDAC_clinicalDataPicker.Finished/STAD-TP.clin.merged.picked.txt
features used ALL
filter cluster smaller than 3
output name
figure height 5
figure width 9
survival legend position OUT
pvalue cutoff 0.05
qvalue cutoff 0.25
make figure ALL
nozzle ver Nozzle.R1
options AGGREGRATED_CLUSTER
report title
job description
Output Files:
 D1V5.pdf
 D1V4.pdf
 D1V1.pdf
 D1V1.png
 D1V2.png
 D1V2.pdf
 D1V3.pdf
 D1V5.png
 D1V3.png
 D1V4.png
 D1V10.pdf
 D1V6.png
 D1V6.pdf
 D1V7.pdf
 D1V9.pdf
 D1V11.png
 D1V8.pdf
 supp.table3.txt
 D1V9.png
 D1V11.pdf
 D1V8.png
 D2V1.pdf
 D1V7.png
 D2V1.png
 D1V10.png
 D2V4.png
 D2V2.pdf
 D2V3.png
 D2V4.pdf
 D2V8.png
 D2V7.png
 D2V2.png
 D2V6.pdf
 D2V8.pdf
 D2V5.pdf
 D2V5.png
 D2V7.pdf
 D2V6.png
 D2V3.pdf
 D3V1.png
 D3V4.pdf
 D2V9.png
 D3V3.png
 D2V11.png
 D3V3.pdf
 D3V2.png
 D2V10.pdf
 D3V2.pdf
 D2V11.pdf
 supp.table4.txt
 D2V9.pdf
 D3V1.pdf
 D3V4.png
 D2V10.png
 D3V10.pdf
 D3V5.png
 D3V8.pdf
 D3V8.png
 D3V5.pdf
 D3V9.pdf
 D3V10.png
 D3V7.pdf
 D3V6.png
 D3V9.png
 D3V11.png
 D3V7.png
 D3V6.pdf
 supp.table5.txt
 D4V1.pdf
 D3V11.pdf
 D4V2.png
 D4V1.png
 D4V3.pdf
 D4V2.pdf
 D4V3.png
 D4V6.pdf
 D4V5.png
 D4V7.pdf
 D4V4.png
 D4V8.pdf
 D4V9.pdf
 D4V6.png
 D4V5.pdf
 D4V7.png
 D4V8.png
 D4V4.pdf
 D4V9.png
 D5V3.pdf
 D5V3.png
 D5V2.pdf
 D4V10.png
 D5V1.pdf
 D5V5.pdf
 D5V4.png
 D5V4.pdf
 D4V11.png
 D5V1.png
 supp.table6.txt
 D5V6.png
 D4V10.pdf
 D5V2.png
 D5V5.png
 D4V11.pdf
 D5V6.pdf
 D5V11.pdf
 D5V8.pdf
 D5V11.png
 D6V2.pdf
 D5V8.png
 D5V7.pdf
 D6V4.pdf
 D5V9.pdf
 D6V2.png
 D6V1.pdf
 D6V4.png
 D6V1.png
 D5V10.pdf
 D5V9.png
 D5V10.png
 D6V3.png
 D6V3.pdf
 D5V7.png
 supp.table7.txt
 D6V6.pdf
 D6V11.png
 supp.table8.txt
 D6V10.png
 D6V6.png
 D6V7.pdf
 D6V5.png
 D6V9.pdf
 D6V9.png
 D6V8.png
 D6V10.pdf
 D6V7.png
 D6V8.pdf
 D6V11.pdf
 table.1.txt
 D6V5.pdf
 nozzle.RData
 nozzle.html
 .lsf.out
 stdout.txt
Execution Times:
Submitted: 17:38:30 02-05-13
Completed: 17:39:10 02-05-13
Elapsed: 00 hrs 00 mins 40 secs