min sampled: 11
max sampled: 19
avg sampled: 15.978261
15 16 19 14 17 17 17 17 18 15 16 16 16 14 17 16 16 15 18 16 19 17 18 18 15 16 17 18 17 17 17 18 16 16 16 15 18 17 15 17 15 19 17 13 17 14 16 14 16 15 15 16 13 18 15 17 16 15 18 16 13 17 15 14 19 18 15 16 12 16 15 17 16 13 16 15 16 15 16 17 18 15 16 17 17 19 17 19 18 14 15 12 15 15 15 16 17 17 11 16 17 17 15 16 17 19 15 18 14 14 11 18 15 15 15 16 17 16 19 13 17 15 18 15 17 17 17 15 17 19 16 14 17 16 16 19 17 17 12 16 15 17 16 15 15 15 17 14 14 18 12 15 14 17 15 17 17 16 16 18 18 15 15 18 14 17 17 15 19 15 17 16 14 16 16 11 15 15 17 14 14 17 17 14 Number of clusters distribution:
Num	Count
1	0
2	20
3	20
4	20
5	20
6	20
7	20
8	20
Reading consensus matrices from files ..

	processing file 'outputprefix.expclu.sub147.2.gct' ..

	processing file 'outputprefix.expclu.sub147.3.gct' ..

	processing file 'outputprefix.expclu.sub147.4.gct' ..

	processing file 'outputprefix.expclu.sub147.5.gct' ..

	processing file 'outputprefix.expclu.sub147.6.gct' ..

	processing file 'outputprefix.expclu.sub147.7.gct' ..

	processing file 'outputprefix.expclu.sub147.8.gct' ..

Plotting statistics to 'outputprefix.expclu.sub147.statistics.pdf' .. 

	Lorenz curve .. done.

	Gini..done.

	Consensus distribution .. done.

	CDF area .. done.

lsf stdout
Sender: LSF System <lsf@node1535>
Subject: Job 3549679: </broad/software/free/Linux/redhat_5_x86_64/pkgs/sun-java-jdk_1.6.0-21_x86_64/bin/java -Xmx512m -DR=/xchip/genepattern/R-2.5.0 -cp /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Acme.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-modules.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/broad-cg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/geneweaver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/RunSomAlg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/jaxb-rt-1.0-ea.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/file_support.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/archiver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/trove.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-common.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Jama-1.0.1.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/cc.jar edu.mit.broad.modules.cc.CC /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/392560/outputprefix.expclu.gct 8 20 -n2 -N 0 -@12345 -S subsample -t HIERARCHICAL -D PEARSON -L average -i 2000 -o outputprefix.expclu -s -d -p -z 2 -l0 -v0 -b/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/ >> cmd.out> in cluster cgalsf Done

Job </broad/software/free/Linux/redhat_5_x86_64/pkgs/sun-java-jdk_1.6.0-21_x86_64/bin/java -Xmx512m -DR=/xchip/genepattern/R-2.5.0 -cp /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Acme.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-modules.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/broad-cg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/geneweaver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/RunSomAlg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/jaxb-rt-1.0-ea.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/file_support.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/archiver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/trove.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-common.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Jama-1.0.1.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/cc.jar edu.mit.broad.modules.cc.CC /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/392560/outputprefix.expclu.gct 8 20 -n2 -N 0 -@12345 -S subsample -t HIERARCHICAL -D PEARSON -L average -i 2000 -o outputprefix.expclu -s -d -p -z 2 -l0 -v0 -b/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/ >> cmd.out> was submitted from host <node1421> by user <cgaadm> in cluster <cgalsf>.
Job was executed on host(s) <node1535>, in queue <cga>, as user <cgaadm> in cluster <cgalsf>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/392561> was used as the working directory.
Started at Wed May  1 14:30:42 2013
Results reported at Wed May  1 14:31:11 2013

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
/broad/software/free/Linux/redhat_5_x86_64/pkgs/sun-java-jdk_1.6.0-21_x86_64/bin/java -Xmx512m -DR=/xchip/genepattern/R-2.5.0 -cp /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Acme.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-modules.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/broad-cg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/geneweaver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/RunSomAlg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/jaxb-rt-1.0-ea.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/file_support.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/archiver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/trove.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-common.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Jama-1.0.1.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/cc.jar edu.mit.broad.modules.cc.CC /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/392560/outputprefix.expclu.gct 8 20 -n2 -N 0 -@12345 -S subsample -t HIERARCHICAL -D PEARSON -L average -i 2000 -o outputprefix.expclu -s -d -p -z 2 -l0 -v0 -b/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/ >> cmd.out
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     32.39 sec.
    Max Memory :       298 MB
    Max Swap   :       893 MB

    Max Processes  :         4
    Max Threads    :        27

The output (if any) follows:



PS:

Read file <.lsf.err> for stderr output of this job.

lsf stderr
