This pipeline computes the correlation between significant copy number variation (cnv) genes and molecular subtypes.
Testing the association between copy number variation of 64 peak regions and 10 molecular subtypes across 913 patients, 463 significant findings detected with Q value < 0.25.
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Amp Peak 1(1p22.3) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Amp Peak 2(1q21.3) cnvs correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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Amp Peak 3(1q44) cnvs correlated to 'MRNA_CNMF', 'CN_CNMF', and 'METHLYATION_CNMF'.
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Amp Peak 4(3p26.1) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Amp Peak 5(3q26.32) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Amp Peak 6(4q13.3) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Amp Peak 7(6p23) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Amp Peak 8(6q21) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Amp Peak 9(8p11.23) cnvs correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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Amp Peak 10(8p11.21) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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Amp Peak 11(8q24.21) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Amp Peak 12(10p15.1) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Amp Peak 13(10q22.3) cnvs correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Amp Peak 14(11p13) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Amp Peak 15(11q13.3) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CNMF'.
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Amp Peak 16(11q14.1) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Amp Peak 17(12p13.33) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Amp Peak 18(12q15) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Amp Peak 19(13q12.3) cnvs correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Amp Peak 20(13q34) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Amp Peak 21(14q21.1) cnvs correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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Amp Peak 22(15q26.3) cnvs correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Amp Peak 23(17q12) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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Amp Peak 24(17q23.1) cnvs correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Amp Peak 25(19q12) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Amp Peak 26(19q13.42) cnvs correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CNMF'.
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Amp Peak 27(20q13.2) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 1(1p36.13) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 2(1p22.1) cnvs correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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Del Peak 3(2q37.3) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 4(3p14.3) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 5(4p16.3) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 6(4q35.2) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 7(5q11.2) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 8(5q21.3) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 9(6p25.3) cnvs correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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Del Peak 10(6q15) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 11(6q27) cnvs correlated to 'CN_CNMF'.
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Del Peak 12(7p22.3) cnvs correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 13(7q36.1) cnvs correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 14(8p23.2) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 15(8p11.21) cnvs correlated to 'MRNA_CNMF', 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 16(9p21.3) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 17(9q21.11) cnvs correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 18(10q23.31) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 19(10q26.3) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 20(11p15.5) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 21(11q13.1) cnvs correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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Del Peak 22(11q23.2) cnvs correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 23(11q25) cnvs correlated to 'MRNA_CNMF', 'CN_CNMF', and 'METHLYATION_CNMF'.
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Del Peak 24(12p13.1) cnvs correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 25(12q24.21) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 26(13q14.2) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 27(14q24.3) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 28(15q13.1) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 29(16q24.3) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 30(17p12) cnvs correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 31(17q21.31) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 32(18q23) cnvs correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 33(19p13.3) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 34(19q13.32) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 35(20p13) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 36(21q11.2) cnvs correlated to 'MRNA_CNMF', 'CN_CNMF', and 'METHLYATION_CNMF'.
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Del Peak 37(22q13.32) cnvs correlated to 'METHLYATION_CNMF'.
Table 1. Get Full Table Overview of the association between significant copy number variation of 64 regions and 10 molecular subtypes. Shown in the table are P values (Q values). Thresholded by Q value < 0.25, 463 significant findings detected.
Molecular subtypes |
MRNA CNMF |
MRNA CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Chi-square test | Fisher's exact test | Chi-square test | Chi-square test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
Amp Peak 1(1p22 3) | 0 (0%) | 705 |
1.29e-13 (6.27e-11) |
6.67e-12 (3e-09) |
6.61e-18 (3.63e-15) |
1.95e-17 (1.06e-14) |
0.000139 (0.0318) |
1.28e-07 (4.5e-05) |
9.25e-16 (4.88e-13) |
2.4e-16 (1.28e-13) |
1.36e-13 (6.57e-11) |
1.36e-15 (7.14e-13) |
Amp Peak 5(3q26 32) | 0 (0%) | 625 |
6.88e-11 (2.96e-08) |
7.83e-10 (3.2e-07) |
8.72e-36 (5.38e-33) |
8.01e-17 (4.32e-14) |
7.16e-07 (0.000231) |
2.92e-06 (0.000863) |
4.31e-22 (2.52e-19) |
5.88e-21 (3.36e-18) |
1.63e-15 (8.53e-13) |
6.39e-24 (3.78e-21) |
Amp Peak 7(6p23) | 0 (0%) | 670 |
3.59e-07 (0.00012) |
1.92e-07 (6.59e-05) |
5.65e-34 (3.48e-31) |
2.44e-17 (1.33e-14) |
1.98e-06 (0.000593) |
8.42e-05 (0.0201) |
1.01e-13 (4.93e-11) |
3.56e-11 (1.56e-08) |
1.52e-18 (8.5e-16) |
2.51e-15 (1.29e-12) |
Amp Peak 8(6q21) | 0 (0%) | 743 |
8.2e-14 (4.03e-11) |
4.54e-10 (1.87e-07) |
1.67e-39 (1.04e-36) |
4.11e-13 (1.95e-10) |
1.04e-08 (4e-06) |
4.64e-07 (0.000153) |
7.59e-22 (4.42e-19) |
2.72e-18 (1.51e-15) |
3.42e-19 (1.93e-16) |
4.33e-23 (2.55e-20) |
Amp Peak 11(8q24 21) | 0 (0%) | 329 |
1.17e-16 (6.3e-14) |
2.62e-07 (8.88e-05) |
2.63e-43 (1.65e-40) |
1.7e-27 (1.02e-24) |
4.58e-08 (1.66e-05) |
9.36e-07 (0.000297) |
3.47e-21 (1.99e-18) |
5.54e-15 (2.83e-12) |
1.31e-21 (7.6e-19) |
2.37e-19 (1.34e-16) |
Amp Peak 12(10p15 1) | 0 (0%) | 655 |
1.72e-21 (9.93e-19) |
1.06e-18 (5.92e-16) |
9.95e-35 (6.13e-32) |
1.93e-26 (1.16e-23) |
7e-11 (3e-08) |
2.33e-12 (1.07e-09) |
2.05e-28 (1.24e-25) |
1.17e-28 (7.06e-26) |
6.23e-28 (3.76e-25) |
1.2e-30 (7.31e-28) |
Amp Peak 17(12p13 33) | 0 (0%) | 675 |
1.91e-12 (8.84e-10) |
2.53e-11 (1.11e-08) |
1.68e-28 (1.01e-25) |
7.29e-17 (3.94e-14) |
2.7e-08 (9.98e-06) |
2.37e-07 (8.07e-05) |
1.67e-17 (9.11e-15) |
1.45e-15 (7.57e-13) |
9.18e-22 (5.32e-19) |
5.5e-18 (3.04e-15) |
Amp Peak 20(13q34) | 0 (0%) | 754 |
9.14e-10 (3.72e-07) |
5.78e-09 (2.28e-06) |
1.51e-17 (8.24e-15) |
1.33e-14 (6.7e-12) |
8.21e-06 (0.00226) |
5.1e-08 (1.84e-05) |
8.44e-14 (4.14e-11) |
1.17e-14 (5.9e-12) |
1.41e-13 (6.83e-11) |
5.59e-20 (3.17e-17) |
Amp Peak 25(19q12) | 0 (0%) | 680 |
2.12e-12 (9.74e-10) |
9.11e-11 (3.9e-08) |
1.28e-21 (7.43e-19) |
4.2e-12 (1.91e-09) |
6.19e-07 (0.000202) |
9.68e-07 (0.000306) |
1.11e-15 (5.84e-13) |
2.08e-15 (1.08e-12) |
6.49e-13 (3.04e-10) |
2.82e-18 (1.57e-15) |
Del Peak 3(2q37 3) | 0 (0%) | 648 |
1.39e-06 (0.000432) |
3.78e-08 (1.38e-05) |
1.57e-20 (8.99e-18) |
2.61e-10 (1.09e-07) |
1.03e-08 (3.96e-06) |
1.11e-07 (3.92e-05) |
1.81e-11 (8.04e-09) |
2.03e-08 (7.56e-06) |
4.66e-11 (2.02e-08) |
2.63e-07 (8.9e-05) |
Del Peak 4(3p14 3) | 0 (0%) | 635 |
1.06e-10 (4.51e-08) |
3.11e-08 (1.14e-05) |
2.93e-33 (1.8e-30) |
5.78e-13 (2.72e-10) |
1.18e-09 (4.77e-07) |
5.21e-06 (0.00148) |
4.61e-18 (2.56e-15) |
4.42e-13 (2.09e-10) |
2.29e-19 (1.3e-16) |
2.57e-14 (1.28e-11) |
Del Peak 5(4p16 3) | 0 (0%) | 632 |
5.63e-11 (2.44e-08) |
6.3e-12 (2.84e-09) |
1.98e-26 (1.18e-23) |
8.41e-13 (3.94e-10) |
4.6e-07 (0.000152) |
1.62e-06 (0.000497) |
9.75e-24 (5.75e-21) |
2.14e-18 (1.19e-15) |
9.97e-15 (5.05e-12) |
4.7e-18 (2.6e-15) |
Del Peak 6(4q35 2) | 0 (0%) | 630 |
3.17e-06 (0.000922) |
9.81e-07 (0.000309) |
2.71e-37 (1.68e-34) |
1.66e-13 (8e-11) |
1.51e-08 (5.71e-06) |
1.78e-06 (0.000537) |
2.22e-21 (1.28e-18) |
3.79e-14 (1.87e-11) |
2.84e-13 (1.36e-10) |
6.73e-18 (3.7e-15) |
Del Peak 7(5q11 2) | 0 (0%) | 679 |
1.17e-27 (7.04e-25) |
6.11e-25 (3.63e-22) |
5.91e-60 (3.78e-57) |
1.43e-39 (8.94e-37) |
3.33e-16 (1.77e-13) |
7.43e-19 (4.18e-16) |
1.33e-40 (8.35e-38) |
1.7e-43 (1.07e-40) |
8.36e-40 (5.24e-37) |
5.41e-49 (3.43e-46) |
Del Peak 8(5q21 3) | 0 (0%) | 688 |
1.36e-29 (8.28e-27) |
1e-26 (5.98e-24) |
6.13e-70 (3.92e-67) |
3.25e-51 (2.07e-48) |
2.6e-15 (1.34e-12) |
8.97e-16 (4.75e-13) |
5.88e-48 (3.73e-45) |
1.06e-47 (6.73e-45) |
1.28e-39 (8.02e-37) |
1.67e-54 (1.07e-51) |
Del Peak 18(10q23 31) | 0 (0%) | 652 |
4.09e-05 (0.0103) |
9.57e-05 (0.0225) |
3.83e-20 (2.18e-17) |
4.75e-12 (2.16e-09) |
1.9e-07 (6.53e-05) |
7.37e-05 (0.0178) |
1.06e-11 (4.75e-09) |
6.91e-09 (2.69e-06) |
5.47e-09 (2.17e-06) |
3.97e-09 (1.58e-06) |
Del Peak 19(10q26 3) | 0 (0%) | 649 |
2.88e-08 (1.06e-05) |
1.49e-07 (5.2e-05) |
2.23e-22 (1.31e-19) |
2.07e-12 (9.53e-10) |
3.06e-08 (1.13e-05) |
8.25e-07 (0.000264) |
1.77e-15 (9.22e-13) |
1.17e-12 (5.44e-10) |
7.81e-12 (3.5e-09) |
3.48e-15 (1.79e-12) |
Del Peak 20(11p15 5) | 0 (0%) | 651 |
1.34e-06 (0.000418) |
1.62e-07 (5.62e-05) |
5.01e-36 (3.1e-33) |
1.96e-12 (9.01e-10) |
1.27e-09 (5.13e-07) |
1.65e-06 (0.000502) |
8.07e-18 (4.42e-15) |
5.07e-13 (2.39e-10) |
3.87e-15 (1.98e-12) |
1.42e-16 (7.61e-14) |
Del Peak 25(12q24 21) | 0 (0%) | 739 |
9.6e-11 (4.1e-08) |
2.5e-10 (1.04e-07) |
2.33e-15 (1.2e-12) |
2.68e-14 (1.33e-11) |
0.000209 (0.0458) |
1.05e-06 (0.00033) |
6.55e-16 (3.47e-13) |
3.47e-13 (1.65e-10) |
1.17e-08 (4.46e-06) |
3.27e-13 (1.56e-10) |
Del Peak 27(14q24 3) | 0 (0%) | 619 |
4e-13 (1.9e-10) |
1.56e-08 (5.89e-06) |
8.6e-37 (5.32e-34) |
3.5e-14 (1.73e-11) |
5.29e-07 (0.000174) |
5.53e-06 (0.00157) |
3.86e-15 (1.98e-12) |
3.04e-13 (1.45e-10) |
5.44e-18 (3.01e-15) |
1.52e-16 (8.14e-14) |
Del Peak 28(15q13 1) | 0 (0%) | 598 |
3.46e-07 (0.000116) |
7.57e-08 (2.69e-05) |
6.74e-31 (4.12e-28) |
1.2e-11 (5.33e-09) |
0.000193 (0.0427) |
2.32e-05 (0.0061) |
6.07e-15 (3.09e-12) |
2.32e-14 (1.16e-11) |
6.32e-19 (3.56e-16) |
1.96e-18 (1.1e-15) |
Del Peak 29(16q24 3) | 0 (0%) | 326 |
1.6e-16 (8.57e-14) |
2.51e-14 (1.25e-11) |
1.66e-14 (8.33e-12) |
4.47e-13 (2.11e-10) |
1.14e-09 (4.64e-07) |
3.45e-11 (1.51e-08) |
2.82e-16 (1.5e-13) |
4.62e-21 (2.65e-18) |
9.22e-15 (4.68e-12) |
8.49e-22 (4.93e-19) |
Del Peak 31(17q21 31) | 0 (0%) | 598 |
1.07e-14 (5.4e-12) |
3.91e-07 (0.00013) |
5.42e-22 (3.17e-19) |
1.19e-11 (5.32e-09) |
1.86e-11 (8.21e-09) |
3.12e-11 (1.37e-08) |
2.86e-21 (1.64e-18) |
8.32e-17 (4.48e-14) |
1.14e-12 (5.32e-10) |
1.76e-11 (7.82e-09) |
Del Peak 33(19p13 3) | 0 (0%) | 608 |
5.99e-11 (2.59e-08) |
4.57e-08 (1.66e-05) |
1.25e-44 (7.91e-42) |
6.53e-18 (3.6e-15) |
3.03e-06 (0.000888) |
3.39e-05 (0.00861) |
1.19e-12 (5.53e-10) |
5.4e-10 (2.22e-07) |
9.67e-16 (5.1e-13) |
6.54e-17 (3.55e-14) |
Del Peak 34(19q13 32) | 0 (0%) | 730 |
1.57e-06 (0.000484) |
8.8e-05 (0.0208) |
4.48e-20 (2.55e-17) |
1.52e-10 (6.42e-08) |
0.000783 (0.144) |
4.95e-05 (0.0122) |
5.28e-09 (2.1e-06) |
6.75e-09 (2.64e-06) |
3.6e-10 (1.5e-07) |
5.78e-12 (2.61e-09) |
Amp Peak 27(20q13 2) | 0 (0%) | 448 |
1.35e-09 (5.42e-07) |
0.000278 (0.0581) |
9.78e-50 (6.22e-47) |
5.18e-25 (3.07e-22) |
0.000604 (0.117) |
0.0154 (1.00) |
6.68e-09 (2.62e-06) |
2.14e-07 (7.31e-05) |
7.41e-10 (3.03e-07) |
1.16e-06 (0.000364) |
Amp Peak 6(4q13 3) | 0 (0%) | 770 |
5.63e-05 (0.0137) |
0.00023 (0.0495) |
7.87e-14 (3.87e-11) |
3.97e-07 (0.000131) |
0.0471 (1.00) |
0.524 (1.00) |
7e-06 (0.00195) |
2.4e-05 (0.00628) |
0.00138 (0.246) |
1.11e-07 (3.92e-05) |
Amp Peak 18(12q15) | 0 (0%) | 678 |
1.81e-08 (6.79e-06) |
0.000131 (0.0301) |
1.86e-25 (1.11e-22) |
1.49e-13 (7.21e-11) |
0.188 (1.00) |
0.0652 (1.00) |
6.02e-06 (0.00169) |
1.71e-05 (0.00456) |
9.16e-08 (3.25e-05) |
0.000644 (0.124) |
Amp Peak 22(15q26 3) | 0 (0%) | 747 |
3.31e-07 (0.000111) |
0.00679 (0.978) |
1.88e-15 (9.76e-13) |
0.000326 (0.0669) |
0.000153 (0.0345) |
0.0384 (1.00) |
2.07e-08 (7.72e-06) |
7.98e-06 (0.0022) |
5.92e-08 (2.11e-05) |
7.56e-09 (2.93e-06) |
Del Peak 1(1p36 13) | 0 (0%) | 533 |
3.27e-05 (0.00837) |
0.000651 (0.124) |
6.02e-32 (3.68e-29) |
2.81e-09 (1.12e-06) |
0.00726 (1.00) |
0.0805 (1.00) |
1.11e-05 (0.00299) |
6.02e-05 (0.0146) |
2.37e-07 (8.07e-05) |
0.00056 (0.11) |
Del Peak 14(8p23 2) | 0 (0%) | 432 |
1.08e-09 (4.4e-07) |
2.53e-05 (0.00661) |
7.63e-31 (4.65e-28) |
1.19e-13 (5.8e-11) |
0.00955 (1.00) |
0.0341 (1.00) |
2.05e-11 (9.03e-09) |
3.71e-08 (1.36e-05) |
5.68e-06 (0.00161) |
4.79e-12 (2.17e-09) |
Del Peak 16(9p21 3) | 0 (0%) | 606 |
2.43e-06 (0.000721) |
0.00076 (0.141) |
1.11e-29 (6.76e-27) |
2.21e-15 (1.14e-12) |
0.00341 (0.543) |
0.444 (1.00) |
7.31e-07 (0.000235) |
2.64e-07 (8.9e-05) |
4.02e-06 (0.00116) |
4.15e-12 (1.89e-09) |
Del Peak 17(9q21 11) | 0 (0%) | 667 |
0.00255 (0.426) |
0.00029 (0.0603) |
3.41e-16 (1.81e-13) |
1.19e-10 (5.06e-08) |
1.04e-05 (0.00281) |
0.00653 (0.954) |
2.41e-06 (0.000718) |
8.3e-06 (0.00227) |
1.41e-08 (5.34e-06) |
9.33e-13 (4.36e-10) |
Del Peak 26(13q14 2) | 0 (0%) | 500 |
2.15e-05 (0.00572) |
4.23e-05 (0.0106) |
7.07e-28 (4.25e-25) |
1.81e-08 (6.79e-06) |
0.538 (1.00) |
0.111 (1.00) |
1.55e-07 (5.38e-05) |
6.39e-06 (0.00178) |
3.86e-10 (1.6e-07) |
1.12e-07 (3.93e-05) |
Del Peak 35(20p13) | 0 (0%) | 779 |
8.81e-06 (0.0024) |
0.000158 (0.0354) |
2.59e-13 (1.24e-10) |
7.15e-09 (2.78e-06) |
0.00154 (0.269) |
0.0119 (1.00) |
2.44e-10 (1.02e-07) |
7.06e-10 (2.89e-07) |
2.69e-12 (1.23e-09) |
1.91e-13 (9.17e-11) |
Amp Peak 13(10q22 3) | 0 (0%) | 781 |
2.2e-05 (0.00582) |
0.0681 (1.00) |
8.18e-09 (3.16e-06) |
0.000149 (0.0337) |
0.0025 (0.423) |
0.0211 (1.00) |
1.83e-07 (6.31e-05) |
0.000689 (0.129) |
3.75e-05 (0.00949) |
0.000675 (0.127) |
Del Peak 10(6q15) | 0 (0%) | 612 |
1.55e-06 (0.000478) |
0.00137 (0.246) |
6.83e-28 (4.11e-25) |
3.78e-08 (1.38e-05) |
0.456 (1.00) |
0.0875 (1.00) |
2.69e-05 (0.00692) |
0.000262 (0.055) |
0.0136 (1.00) |
5.04e-05 (0.0124) |
Del Peak 12(7p22 3) | 0 (0%) | 795 |
0.00298 (0.482) |
0.000366 (0.0742) |
2.06e-15 (1.07e-12) |
5.89e-07 (0.000193) |
0.0214 (1.00) |
0.00553 (0.829) |
8.07e-09 (3.12e-06) |
5.39e-08 (1.93e-05) |
3.96e-11 (1.72e-08) |
1.38e-10 (5.86e-08) |
Del Peak 30(17p12) | 0 (0%) | 367 |
2.14e-10 (8.99e-08) |
0.166 (1.00) |
9.33e-23 (5.49e-20) |
7.4e-07 (0.000238) |
8.07e-05 (0.0194) |
0.00775 (1.00) |
0.000586 (0.114) |
0.121 (1.00) |
0.000255 (0.0541) |
0.000127 (0.0293) |
Amp Peak 2(1q21 3) | 0 (0%) | 254 |
1.54e-07 (5.37e-05) |
0.00185 (0.322) |
6.45e-09 (2.54e-06) |
1.66e-06 (0.000504) |
0.0586 (1.00) |
0.00703 (1.00) |
0.000167 (0.0373) |
0.000205 (0.045) |
0.00102 (0.184) |
0.00262 (0.434) |
Amp Peak 4(3p26 1) | 0 (0%) | 725 |
0.0124 (1.00) |
0.00803 (1.00) |
1.01e-13 (4.93e-11) |
2.95e-06 (0.000868) |
0.00573 (0.848) |
0.00869 (1.00) |
5.11e-09 (2.03e-06) |
6.57e-07 (0.000213) |
5.97e-06 (0.00168) |
1.18e-08 (4.49e-06) |
Amp Peak 21(14q21 1) | 0 (0%) | 732 |
0.000259 (0.0547) |
0.00478 (0.721) |
1.97e-09 (7.89e-07) |
5.16e-05 (0.0127) |
0.0823 (1.00) |
0.0385 (1.00) |
3.92e-05 (0.00987) |
2.45e-06 (0.000725) |
1.94e-06 (0.000584) |
0.0693 (1.00) |
Amp Peak 23(17q12) | 0 (0%) | 618 |
1.49e-14 (7.49e-12) |
0.0003 (0.0618) |
7.29e-34 (4.48e-31) |
5.76e-09 (2.28e-06) |
0.049 (1.00) |
0.00821 (1.00) |
0.000101 (0.0237) |
0.000454 (0.0903) |
0.0148 (1.00) |
0.0196 (1.00) |
Amp Peak 24(17q23 1) | 0 (0%) | 539 |
2.42e-14 (1.21e-11) |
0.00149 (0.263) |
6.19e-38 (3.84e-35) |
1.45e-10 (6.12e-08) |
0.191 (1.00) |
0.334 (1.00) |
0.000644 (0.124) |
0.00575 (0.848) |
3.1e-07 (0.000104) |
3.57e-06 (0.00103) |
Del Peak 32(18q23) | 0 (0%) | 620 |
0.000347 (0.0709) |
0.149 (1.00) |
1.32e-15 (6.95e-13) |
1.2e-08 (4.56e-06) |
0.00413 (0.64) |
0.581 (1.00) |
2.54e-05 (0.00661) |
0.00371 (0.585) |
0.000375 (0.0757) |
0.000143 (0.0324) |
Amp Peak 9(8p11 23) | 0 (0%) | 567 |
1.64e-06 (0.000501) |
0.00561 (0.836) |
1.44e-24 (8.5e-22) |
1.22e-12 (5.64e-10) |
0.0399 (1.00) |
0.00473 (0.718) |
0.000227 (0.049) |
3.34e-05 (0.00851) |
0.0447 (1.00) |
0.0332 (1.00) |
Amp Peak 14(11p13) | 0 (0%) | 721 |
0.311 (1.00) |
0.148 (1.00) |
1.84e-10 (7.73e-08) |
4.84e-05 (0.012) |
0.105 (1.00) |
0.229 (1.00) |
2.61e-05 (0.00675) |
0.0204 (1.00) |
1.33e-06 (0.000417) |
1.91e-08 (7.15e-06) |
Amp Peak 16(11q14 1) | 0 (0%) | 679 |
0.12 (1.00) |
0.101 (1.00) |
1.8e-19 (1.02e-16) |
7.93e-06 (0.0022) |
0.148 (1.00) |
0.199 (1.00) |
8.57e-05 (0.0203) |
0.00146 (0.259) |
8.98e-07 (0.000285) |
1.39e-05 (0.00372) |
Del Peak 2(1p22 1) | 0 (0%) | 608 |
0.00234 (0.4) |
8.39e-05 (0.0201) |
5.77e-22 (3.36e-19) |
0.00103 (0.186) |
0.0231 (1.00) |
0.049 (1.00) |
0.000574 (0.113) |
3.06e-06 (0.000892) |
0.0125 (1.00) |
0.0329 (1.00) |
Del Peak 13(7q36 1) | 0 (0%) | 739 |
0.0129 (1.00) |
0.043 (1.00) |
5.25e-10 (2.16e-07) |
0.0897 (1.00) |
0.551 (1.00) |
0.0562 (1.00) |
0.000414 (0.0831) |
0.000496 (0.0983) |
5.26e-08 (1.89e-05) |
1.6e-06 (0.000491) |
Del Peak 15(8p11 21) | 0 (0%) | 740 |
0.000126 (0.0292) |
0.0141 (1.00) |
6.19e-11 (2.67e-08) |
0.0474 (1.00) |
0.0465 (1.00) |
0.0191 (1.00) |
0.000593 (0.115) |
0.000914 (0.167) |
0.00401 (0.625) |
6.26e-06 (0.00175) |
Amp Peak 10(8p11 21) | 0 (0%) | 559 |
0.0144 (1.00) |
0.0422 (1.00) |
1.01e-22 (5.92e-20) |
4.03e-08 (1.46e-05) |
0.791 (1.00) |
0.633 (1.00) |
0.000224 (0.0487) |
0.000104 (0.0242) |
0.0361 (1.00) |
0.0215 (1.00) |
Amp Peak 19(13q12 3) | 0 (0%) | 785 |
0.0708 (1.00) |
0.0557 (1.00) |
2.22e-05 (0.00586) |
0.00895 (1.00) |
0.0155 (1.00) |
0.142 (1.00) |
2.63e-05 (0.00679) |
0.00269 (0.441) |
0.000196 (0.0433) |
0.00043 (0.086) |
Amp Peak 26(19q13 42) | 0 (0%) | 678 |
0.000775 (0.143) |
0.0212 (1.00) |
2.5e-14 (1.25e-11) |
6.23e-07 (0.000202) |
0.00233 (0.4) |
0.0549 (1.00) |
0.00264 (0.436) |
0.029 (1.00) |
4.27e-06 (0.00123) |
0.00441 (0.675) |
Del Peak 22(11q23 2) | 0 (0%) | 464 |
2.08e-08 (7.72e-06) |
0.0296 (1.00) |
3.22e-42 (2.02e-39) |
7.68e-12 (3.45e-09) |
0.975 (1.00) |
0.475 (1.00) |
0.00305 (0.491) |
0.00254 (0.426) |
0.0196 (1.00) |
0.000137 (0.0314) |
Del Peak 24(12p13 1) | 0 (0%) | 756 |
0.0439 (1.00) |
0.14 (1.00) |
0.000979 (0.178) |
0.0149 (1.00) |
0.222 (1.00) |
0.042 (1.00) |
0.00021 (0.0458) |
0.0137 (1.00) |
8.03e-05 (0.0194) |
8.68e-06 (0.00237) |
Amp Peak 3(1q44) | 0 (0%) | 258 |
3.9e-06 (0.00113) |
0.263 (1.00) |
1.37e-07 (4.8e-05) |
9.22e-06 (0.0025) |
0.864 (1.00) |
0.324 (1.00) |
0.206 (1.00) |
0.383 (1.00) |
0.711 (1.00) |
0.0277 (1.00) |
Amp Peak 15(11q13 3) | 0 (0%) | 564 |
0.00319 (0.511) |
0.0336 (1.00) |
4.91e-41 (3.08e-38) |
4e-10 (1.66e-07) |
0.966 (1.00) |
0.146 (1.00) |
0.0453 (1.00) |
0.168 (1.00) |
0.000292 (0.0604) |
0.0396 (1.00) |
Del Peak 23(11q25) | 0 (0%) | 492 |
0.000243 (0.052) |
0.96 (1.00) |
6.15e-38 (3.83e-35) |
9.89e-09 (3.81e-06) |
0.126 (1.00) |
0.707 (1.00) |
0.355 (1.00) |
0.351 (1.00) |
0.093 (1.00) |
0.0331 (1.00) |
Del Peak 36(21q11 2) | 0 (0%) | 731 |
0.000252 (0.0538) |
0.0342 (1.00) |
4.31e-11 (1.87e-08) |
2.01e-06 (0.000602) |
0.225 (1.00) |
0.502 (1.00) |
0.0581 (1.00) |
0.197 (1.00) |
0.0142 (1.00) |
0.0194 (1.00) |
Del Peak 9(6p25 3) | 0 (0%) | 743 |
0.318 (1.00) |
0.522 (1.00) |
8.51e-07 (0.000271) |
4.71e-05 (0.0117) |
0.439 (1.00) |
0.597 (1.00) |
0.00292 (0.477) |
0.00786 (1.00) |
0.299 (1.00) |
0.0417 (1.00) |
Del Peak 21(11q13 1) | 0 (0%) | 719 |
0.00185 (0.322) |
0.0584 (1.00) |
3.51e-17 (1.91e-14) |
4.39e-06 (0.00125) |
0.331 (1.00) |
0.393 (1.00) |
0.00823 (1.00) |
0.0169 (1.00) |
0.596 (1.00) |
0.0297 (1.00) |
Del Peak 11(6q27) | 0 (0%) | 599 |
0.0183 (1.00) |
0.61 (1.00) |
2.87e-14 (1.42e-11) |
0.00375 (0.589) |
0.113 (1.00) |
0.796 (1.00) |
0.341 (1.00) |
0.561 (1.00) |
0.393 (1.00) |
0.115 (1.00) |
Del Peak 37(22q13 32) | 0 (0%) | 503 |
0.164 (1.00) |
0.0438 (1.00) |
0.063 (1.00) |
0.000674 (0.127) |
0.121 (1.00) |
0.0218 (1.00) |
0.00661 (0.959) |
0.00247 (0.419) |
0.00438 (0.674) |
0.492 (1.00) |
P value = 1.29e-13 (Chi-square test), Q value = 6.3e-11
Table S1. Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
AMP PEAK 1(1P22.3) CNV | 16 | 2 | 3 | 51 | 16 | 2 | 24 | 2 |
AMP PEAK 1(1P22.3) WILD-TYPE | 108 | 34 | 20 | 44 | 56 | 18 | 79 | 38 |
Figure S1. Get High-res Image Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D1V1.png)
P value = 6.67e-12 (Fisher's exact test), Q value = 3e-09
Table S2. Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 125 | 248 |
AMP PEAK 1(1P22.3) CNV | 13 | 57 | 46 |
AMP PEAK 1(1P22.3) WILD-TYPE | 127 | 68 | 202 |
Figure S2. Get High-res Image Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D1V2.png)
P value = 6.61e-18 (Chi-square test), Q value = 3.6e-15
Table S3. Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
AMP PEAK 1(1P22.3) CNV | 47 | 26 | 29 | 90 | 16 |
AMP PEAK 1(1P22.3) WILD-TYPE | 300 | 196 | 43 | 133 | 33 |
Figure S3. Get High-res Image Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #3: 'CN_CNMF'
![](D1V3.png)
P value = 1.95e-17 (Chi-square test), Q value = 1.1e-14
Table S4. Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
AMP PEAK 1(1P22.3) CNV | 57 | 21 | 22 | 17 | 2 | 17 |
AMP PEAK 1(1P22.3) WILD-TYPE | 44 | 118 | 71 | 120 | 38 | 80 |
Figure S4. Get High-res Image Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D1V4.png)
P value = 0.000139 (Fisher's exact test), Q value = 0.032
Table S5. Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 147 | 133 | 117 |
AMP PEAK 1(1P22.3) CNV | 52 | 28 | 16 |
AMP PEAK 1(1P22.3) WILD-TYPE | 95 | 105 | 101 |
Figure S5. Get High-res Image Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D1V5.png)
P value = 1.28e-07 (Fisher's exact test), Q value = 4.5e-05
Table S6. Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 161 | 110 | 126 |
AMP PEAK 1(1P22.3) CNV | 32 | 12 | 52 |
AMP PEAK 1(1P22.3) WILD-TYPE | 129 | 98 | 74 |
Figure S6. Get High-res Image Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D1V6.png)
P value = 9.25e-16 (Fisher's exact test), Q value = 4.9e-13
Table S7. Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
AMP PEAK 1(1P22.3) CNV | 96 | 13 | 73 |
AMP PEAK 1(1P22.3) WILD-TYPE | 138 | 135 | 373 |
Figure S7. Get High-res Image Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D1V7.png)
P value = 2.4e-16 (Fisher's exact test), Q value = 1.3e-13
Table S8. Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
AMP PEAK 1(1P22.3) CNV | 23 | 70 | 89 |
AMP PEAK 1(1P22.3) WILD-TYPE | 193 | 338 | 115 |
Figure S8. Get High-res Image Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D1V8.png)
P value = 1.36e-13 (Fisher's exact test), Q value = 6.6e-11
Table S9. Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
AMP PEAK 1(1P22.3) CNV | 39 | 59 | 103 |
AMP PEAK 1(1P22.3) WILD-TYPE | 195 | 333 | 152 |
Figure S9. Get High-res Image Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D1V9.png)
P value = 1.36e-15 (Fisher's exact test), Q value = 7.1e-13
Table S10. Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
AMP PEAK 1(1P22.3) CNV | 54 | 46 | 101 |
AMP PEAK 1(1P22.3) WILD-TYPE | 308 | 238 | 134 |
Figure S10. Get High-res Image Gene #1: 'Amp Peak 1(1p22.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D1V10.png)
P value = 1.54e-07 (Chi-square test), Q value = 5.4e-05
Table S11. Gene #2: 'Amp Peak 2(1q21.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
AMP PEAK 2(1Q21.3) CNV | 77 | 19 | 16 | 88 | 54 | 10 | 85 | 30 |
AMP PEAK 2(1Q21.3) WILD-TYPE | 47 | 17 | 7 | 7 | 18 | 10 | 18 | 10 |
Figure S11. Get High-res Image Gene #2: 'Amp Peak 2(1q21.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D2V1.png)
P value = 6.45e-09 (Chi-square test), Q value = 2.5e-06
Table S12. Gene #2: 'Amp Peak 2(1q21.3)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
AMP PEAK 2(1Q21.3) CNV | 219 | 167 | 72 | 167 | 34 |
AMP PEAK 2(1Q21.3) WILD-TYPE | 128 | 55 | 0 | 56 | 15 |
Figure S12. Get High-res Image Gene #2: 'Amp Peak 2(1q21.3)' versus Molecular Subtype #3: 'CN_CNMF'
![](D2V3.png)
P value = 1.66e-06 (Chi-square test), Q value = 5e-04
Table S13. Gene #2: 'Amp Peak 2(1q21.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
AMP PEAK 2(1Q21.3) CNV | 85 | 110 | 74 | 90 | 21 | 55 |
AMP PEAK 2(1Q21.3) WILD-TYPE | 16 | 29 | 19 | 47 | 19 | 42 |
Figure S13. Get High-res Image Gene #2: 'Amp Peak 2(1q21.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D2V4.png)
P value = 0.000167 (Fisher's exact test), Q value = 0.037
Table S14. Gene #2: 'Amp Peak 2(1q21.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
AMP PEAK 2(1Q21.3) CNV | 191 | 94 | 313 |
AMP PEAK 2(1Q21.3) WILD-TYPE | 43 | 54 | 133 |
Figure S14. Get High-res Image Gene #2: 'Amp Peak 2(1q21.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D2V7.png)
P value = 0.000205 (Fisher's exact test), Q value = 0.045
Table S15. Gene #2: 'Amp Peak 2(1q21.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
AMP PEAK 2(1Q21.3) CNV | 137 | 295 | 166 |
AMP PEAK 2(1Q21.3) WILD-TYPE | 79 | 113 | 38 |
Figure S15. Get High-res Image Gene #2: 'Amp Peak 2(1q21.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D2V8.png)
P value = 0.00102 (Fisher's exact test), Q value = 0.18
Table S16. Gene #2: 'Amp Peak 2(1q21.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
AMP PEAK 2(1Q21.3) CNV | 153 | 277 | 204 |
AMP PEAK 2(1Q21.3) WILD-TYPE | 81 | 115 | 51 |
Figure S16. Get High-res Image Gene #2: 'Amp Peak 2(1q21.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D2V9.png)
P value = 3.9e-06 (Chi-square test), Q value = 0.0011
Table S17. Gene #3: 'Amp Peak 3(1q44)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
AMP PEAK 3(1Q44) CNV | 72 | 19 | 16 | 78 | 57 | 11 | 86 | 33 |
AMP PEAK 3(1Q44) WILD-TYPE | 52 | 17 | 7 | 17 | 15 | 9 | 17 | 7 |
Figure S17. Get High-res Image Gene #3: 'Amp Peak 3(1q44)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D3V1.png)
P value = 1.37e-07 (Chi-square test), Q value = 4.8e-05
Table S18. Gene #3: 'Amp Peak 3(1q44)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
AMP PEAK 3(1Q44) CNV | 226 | 165 | 72 | 160 | 32 |
AMP PEAK 3(1Q44) WILD-TYPE | 121 | 57 | 0 | 63 | 17 |
Figure S18. Get High-res Image Gene #3: 'Amp Peak 3(1q44)' versus Molecular Subtype #3: 'CN_CNMF'
![](D3V3.png)
P value = 9.22e-06 (Chi-square test), Q value = 0.0025
Table S19. Gene #3: 'Amp Peak 3(1q44)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
AMP PEAK 3(1Q44) CNV | 74 | 113 | 79 | 85 | 24 | 57 |
AMP PEAK 3(1Q44) WILD-TYPE | 27 | 26 | 14 | 52 | 16 | 40 |
Figure S19. Get High-res Image Gene #3: 'Amp Peak 3(1q44)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D3V4.png)
P value = 1.01e-13 (Chi-square test), Q value = 4.9e-11
Table S20. Gene #4: 'Amp Peak 4(3p26.1)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
AMP PEAK 4(3P26.1) CNV | 25 | 55 | 20 | 75 | 13 |
AMP PEAK 4(3P26.1) WILD-TYPE | 322 | 167 | 52 | 148 | 36 |
Figure S20. Get High-res Image Gene #4: 'Amp Peak 4(3p26.1)' versus Molecular Subtype #3: 'CN_CNMF'
![](D4V3.png)
P value = 2.95e-06 (Chi-square test), Q value = 0.00087
Table S21. Gene #4: 'Amp Peak 4(3p26.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
AMP PEAK 4(3P26.1) CNV | 31 | 9 | 22 | 30 | 3 | 11 |
AMP PEAK 4(3P26.1) WILD-TYPE | 70 | 130 | 71 | 107 | 37 | 86 |
Figure S21. Get High-res Image Gene #4: 'Amp Peak 4(3p26.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D4V4.png)
P value = 5.11e-09 (Fisher's exact test), Q value = 2e-06
Table S22. Gene #4: 'Amp Peak 4(3p26.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
AMP PEAK 4(3P26.1) CNV | 75 | 10 | 90 |
AMP PEAK 4(3P26.1) WILD-TYPE | 159 | 138 | 356 |
Figure S22. Get High-res Image Gene #4: 'Amp Peak 4(3p26.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D4V7.png)
P value = 6.57e-07 (Fisher's exact test), Q value = 0.00021
Table S23. Gene #4: 'Amp Peak 4(3p26.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
AMP PEAK 4(3P26.1) CNV | 21 | 94 | 60 |
AMP PEAK 4(3P26.1) WILD-TYPE | 195 | 314 | 144 |
Figure S23. Get High-res Image Gene #4: 'Amp Peak 4(3p26.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D4V8.png)
P value = 5.97e-06 (Fisher's exact test), Q value = 0.0017
Table S24. Gene #4: 'Amp Peak 4(3p26.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
AMP PEAK 4(3P26.1) CNV | 30 | 71 | 77 |
AMP PEAK 4(3P26.1) WILD-TYPE | 204 | 321 | 178 |
Figure S24. Get High-res Image Gene #4: 'Amp Peak 4(3p26.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D4V9.png)
P value = 1.18e-08 (Fisher's exact test), Q value = 4.5e-06
Table S25. Gene #4: 'Amp Peak 4(3p26.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
AMP PEAK 4(3P26.1) CNV | 71 | 31 | 76 |
AMP PEAK 4(3P26.1) WILD-TYPE | 291 | 253 | 159 |
Figure S25. Get High-res Image Gene #4: 'Amp Peak 4(3p26.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D4V10.png)
P value = 6.88e-11 (Chi-square test), Q value = 3e-08
Table S26. Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
AMP PEAK 5(3Q26.32) CNV | 39 | 11 | 4 | 58 | 34 | 9 | 19 | 4 |
AMP PEAK 5(3Q26.32) WILD-TYPE | 85 | 25 | 19 | 37 | 38 | 11 | 84 | 36 |
Figure S26. Get High-res Image Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D5V1.png)
P value = 7.83e-10 (Fisher's exact test), Q value = 3.2e-07
Table S27. Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 125 | 248 |
AMP PEAK 5(3Q26.32) CNV | 27 | 71 | 80 |
AMP PEAK 5(3Q26.32) WILD-TYPE | 113 | 54 | 168 |
Figure S27. Get High-res Image Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D5V2.png)
P value = 8.72e-36 (Chi-square test), Q value = 5.4e-33
Table S28. Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
AMP PEAK 5(3Q26.32) CNV | 35 | 77 | 24 | 138 | 14 |
AMP PEAK 5(3Q26.32) WILD-TYPE | 312 | 145 | 48 | 85 | 35 |
Figure S28. Get High-res Image Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #3: 'CN_CNMF'
![](D5V3.png)
P value = 8.01e-17 (Chi-square test), Q value = 4.3e-14
Table S29. Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
AMP PEAK 5(3Q26.32) CNV | 63 | 15 | 29 | 41 | 9 | 17 |
AMP PEAK 5(3Q26.32) WILD-TYPE | 38 | 124 | 64 | 96 | 31 | 80 |
Figure S29. Get High-res Image Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D5V4.png)
P value = 7.16e-07 (Fisher's exact test), Q value = 0.00023
Table S30. Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 147 | 133 | 117 |
AMP PEAK 5(3Q26.32) CNV | 76 | 35 | 28 |
AMP PEAK 5(3Q26.32) WILD-TYPE | 71 | 98 | 89 |
Figure S30. Get High-res Image Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D5V5.png)
P value = 2.92e-06 (Fisher's exact test), Q value = 0.00086
Table S31. Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 161 | 110 | 126 |
AMP PEAK 5(3Q26.32) CNV | 48 | 25 | 66 |
AMP PEAK 5(3Q26.32) WILD-TYPE | 113 | 85 | 60 |
Figure S31. Get High-res Image Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D5V6.png)
P value = 4.31e-22 (Fisher's exact test), Q value = 2.5e-19
Table S32. Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
AMP PEAK 5(3Q26.32) CNV | 136 | 21 | 117 |
AMP PEAK 5(3Q26.32) WILD-TYPE | 98 | 127 | 329 |
Figure S32. Get High-res Image Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D5V7.png)
P value = 5.88e-21 (Fisher's exact test), Q value = 3.4e-18
Table S33. Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
AMP PEAK 5(3Q26.32) CNV | 35 | 118 | 121 |
AMP PEAK 5(3Q26.32) WILD-TYPE | 181 | 290 | 83 |
Figure S33. Get High-res Image Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D5V8.png)
P value = 1.63e-15 (Fisher's exact test), Q value = 8.5e-13
Table S34. Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
AMP PEAK 5(3Q26.32) CNV | 46 | 100 | 132 |
AMP PEAK 5(3Q26.32) WILD-TYPE | 188 | 292 | 123 |
Figure S34. Get High-res Image Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D5V9.png)
P value = 6.39e-24 (Fisher's exact test), Q value = 3.8e-21
Table S35. Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
AMP PEAK 5(3Q26.32) CNV | 95 | 47 | 136 |
AMP PEAK 5(3Q26.32) WILD-TYPE | 267 | 237 | 99 |
Figure S35. Get High-res Image Gene #5: 'Amp Peak 5(3q26.32)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D5V10.png)
P value = 5.63e-05 (Chi-square test), Q value = 0.014
Table S36. Gene #6: 'Amp Peak 6(4q13.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
AMP PEAK 6(4Q13.3) CNV | 31 | 2 | 3 | 19 | 18 | 4 | 3 | 3 |
AMP PEAK 6(4Q13.3) WILD-TYPE | 93 | 34 | 20 | 76 | 54 | 16 | 100 | 37 |
Figure S36. Get High-res Image Gene #6: 'Amp Peak 6(4q13.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D6V1.png)
P value = 0.00023 (Fisher's exact test), Q value = 0.049
Table S37. Gene #6: 'Amp Peak 6(4q13.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 125 | 248 |
AMP PEAK 6(4Q13.3) CNV | 9 | 29 | 45 |
AMP PEAK 6(4Q13.3) WILD-TYPE | 131 | 96 | 203 |
Figure S37. Get High-res Image Gene #6: 'Amp Peak 6(4q13.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D6V2.png)
P value = 7.87e-14 (Chi-square test), Q value = 3.9e-11
Table S38. Gene #6: 'Amp Peak 6(4q13.3)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
AMP PEAK 6(4Q13.3) CNV | 21 | 59 | 2 | 55 | 6 |
AMP PEAK 6(4Q13.3) WILD-TYPE | 326 | 163 | 70 | 168 | 43 |
Figure S38. Get High-res Image Gene #6: 'Amp Peak 6(4q13.3)' versus Molecular Subtype #3: 'CN_CNMF'
![](D6V3.png)
P value = 3.97e-07 (Chi-square test), Q value = 0.00013
Table S39. Gene #6: 'Amp Peak 6(4q13.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
AMP PEAK 6(4Q13.3) CNV | 24 | 4 | 11 | 34 | 4 | 9 |
AMP PEAK 6(4Q13.3) WILD-TYPE | 77 | 135 | 82 | 103 | 36 | 88 |
Figure S39. Get High-res Image Gene #6: 'Amp Peak 6(4q13.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D6V4.png)
P value = 7e-06 (Fisher's exact test), Q value = 0.0019
Table S40. Gene #6: 'Amp Peak 6(4q13.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
AMP PEAK 6(4Q13.3) CNV | 57 | 9 | 71 |
AMP PEAK 6(4Q13.3) WILD-TYPE | 177 | 139 | 375 |
Figure S40. Get High-res Image Gene #6: 'Amp Peak 6(4q13.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D6V7.png)
P value = 2.4e-05 (Fisher's exact test), Q value = 0.0063
Table S41. Gene #6: 'Amp Peak 6(4q13.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
AMP PEAK 6(4Q13.3) CNV | 20 | 64 | 53 |
AMP PEAK 6(4Q13.3) WILD-TYPE | 196 | 344 | 151 |
Figure S41. Get High-res Image Gene #6: 'Amp Peak 6(4q13.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D6V8.png)
P value = 0.00138 (Fisher's exact test), Q value = 0.25
Table S42. Gene #6: 'Amp Peak 6(4q13.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
AMP PEAK 6(4Q13.3) CNV | 26 | 56 | 58 |
AMP PEAK 6(4Q13.3) WILD-TYPE | 208 | 336 | 197 |
Figure S42. Get High-res Image Gene #6: 'Amp Peak 6(4q13.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D6V9.png)
P value = 1.11e-07 (Fisher's exact test), Q value = 3.9e-05
Table S43. Gene #6: 'Amp Peak 6(4q13.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
AMP PEAK 6(4Q13.3) CNV | 55 | 23 | 62 |
AMP PEAK 6(4Q13.3) WILD-TYPE | 307 | 261 | 173 |
Figure S43. Get High-res Image Gene #6: 'Amp Peak 6(4q13.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D6V10.png)
P value = 3.59e-07 (Chi-square test), Q value = 0.00012
Table S44. Gene #7: 'Amp Peak 7(6p23)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
AMP PEAK 7(6P23) CNV | 30 | 6 | 3 | 48 | 27 | 8 | 18 | 6 |
AMP PEAK 7(6P23) WILD-TYPE | 94 | 30 | 20 | 47 | 45 | 12 | 85 | 34 |
Figure S44. Get High-res Image Gene #7: 'Amp Peak 7(6p23)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D7V1.png)
P value = 1.92e-07 (Fisher's exact test), Q value = 6.6e-05
Table S45. Gene #7: 'Amp Peak 7(6p23)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 125 | 248 |
AMP PEAK 7(6P23) CNV | 22 | 58 | 66 |
AMP PEAK 7(6P23) WILD-TYPE | 118 | 67 | 182 |
Figure S45. Get High-res Image Gene #7: 'Amp Peak 7(6p23)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D7V2.png)
P value = 5.65e-34 (Chi-square test), Q value = 3.5e-31
Table S46. Gene #7: 'Amp Peak 7(6p23)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
AMP PEAK 7(6P23) CNV | 25 | 57 | 21 | 123 | 17 |
AMP PEAK 7(6P23) WILD-TYPE | 322 | 165 | 51 | 100 | 32 |
Figure S46. Get High-res Image Gene #7: 'Amp Peak 7(6p23)' versus Molecular Subtype #3: 'CN_CNMF'
![](D7V3.png)
P value = 2.44e-17 (Chi-square test), Q value = 1.3e-14
Table S47. Gene #7: 'Amp Peak 7(6p23)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
AMP PEAK 7(6P23) CNV | 54 | 11 | 22 | 48 | 2 | 14 |
AMP PEAK 7(6P23) WILD-TYPE | 47 | 128 | 71 | 89 | 38 | 83 |
Figure S47. Get High-res Image Gene #7: 'Amp Peak 7(6p23)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D7V4.png)
P value = 1.98e-06 (Fisher's exact test), Q value = 0.00059
Table S48. Gene #7: 'Amp Peak 7(6p23)' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 147 | 133 | 117 |
AMP PEAK 7(6P23) CNV | 64 | 25 | 23 |
AMP PEAK 7(6P23) WILD-TYPE | 83 | 108 | 94 |
Figure S48. Get High-res Image Gene #7: 'Amp Peak 7(6p23)' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D7V5.png)
P value = 8.42e-05 (Fisher's exact test), Q value = 0.02
Table S49. Gene #7: 'Amp Peak 7(6p23)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 161 | 110 | 126 |
AMP PEAK 7(6P23) CNV | 34 | 24 | 54 |
AMP PEAK 7(6P23) WILD-TYPE | 127 | 86 | 72 |
Figure S49. Get High-res Image Gene #7: 'Amp Peak 7(6p23)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D7V6.png)
P value = 1.01e-13 (Fisher's exact test), Q value = 4.9e-11
Table S50. Gene #7: 'Amp Peak 7(6p23)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
AMP PEAK 7(6P23) CNV | 105 | 17 | 101 |
AMP PEAK 7(6P23) WILD-TYPE | 129 | 131 | 345 |
Figure S50. Get High-res Image Gene #7: 'Amp Peak 7(6p23)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D7V7.png)
P value = 3.56e-11 (Fisher's exact test), Q value = 1.6e-08
Table S51. Gene #7: 'Amp Peak 7(6p23)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
AMP PEAK 7(6P23) CNV | 31 | 102 | 90 |
AMP PEAK 7(6P23) WILD-TYPE | 185 | 306 | 114 |
Figure S51. Get High-res Image Gene #7: 'Amp Peak 7(6p23)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D7V8.png)
P value = 1.52e-18 (Fisher's exact test), Q value = 8.5e-16
Table S52. Gene #7: 'Amp Peak 7(6p23)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
AMP PEAK 7(6P23) CNV | 31 | 76 | 119 |
AMP PEAK 7(6P23) WILD-TYPE | 203 | 316 | 136 |
Figure S52. Get High-res Image Gene #7: 'Amp Peak 7(6p23)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D7V9.png)
P value = 2.51e-15 (Fisher's exact test), Q value = 1.3e-12
Table S53. Gene #7: 'Amp Peak 7(6p23)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
AMP PEAK 7(6P23) CNV | 88 | 35 | 103 |
AMP PEAK 7(6P23) WILD-TYPE | 274 | 249 | 132 |
Figure S53. Get High-res Image Gene #7: 'Amp Peak 7(6p23)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D7V10.png)
P value = 8.2e-14 (Chi-square test), Q value = 4e-11
Table S54. Gene #8: 'Amp Peak 8(6q21)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
AMP PEAK 8(6Q21) CNV | 11 | 1 | 4 | 41 | 25 | 9 | 11 | 2 |
AMP PEAK 8(6Q21) WILD-TYPE | 113 | 35 | 19 | 54 | 47 | 11 | 92 | 38 |
Figure S54. Get High-res Image Gene #8: 'Amp Peak 8(6q21)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D8V1.png)
P value = 4.54e-10 (Fisher's exact test), Q value = 1.9e-07
Table S55. Gene #8: 'Amp Peak 8(6q21)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 125 | 248 |
AMP PEAK 8(6Q21) CNV | 11 | 50 | 43 |
AMP PEAK 8(6Q21) WILD-TYPE | 129 | 75 | 205 |
Figure S55. Get High-res Image Gene #8: 'Amp Peak 8(6q21)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D8V2.png)
P value = 1.67e-39 (Chi-square test), Q value = 1e-36
Table S56. Gene #8: 'Amp Peak 8(6q21)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
AMP PEAK 8(6Q21) CNV | 20 | 20 | 15 | 109 | 6 |
AMP PEAK 8(6Q21) WILD-TYPE | 327 | 202 | 57 | 114 | 43 |
Figure S56. Get High-res Image Gene #8: 'Amp Peak 8(6q21)' versus Molecular Subtype #3: 'CN_CNMF'
![](D8V3.png)
P value = 4.11e-13 (Chi-square test), Q value = 2e-10
Table S57. Gene #8: 'Amp Peak 8(6q21)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
AMP PEAK 8(6Q21) CNV | 42 | 5 | 16 | 19 | 2 | 17 |
AMP PEAK 8(6Q21) WILD-TYPE | 59 | 134 | 77 | 118 | 38 | 80 |
Figure S57. Get High-res Image Gene #8: 'Amp Peak 8(6q21)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D8V4.png)
P value = 1.04e-08 (Fisher's exact test), Q value = 4e-06
Table S58. Gene #8: 'Amp Peak 8(6q21)' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 147 | 133 | 117 |
AMP PEAK 8(6Q21) CNV | 54 | 12 | 16 |
AMP PEAK 8(6Q21) WILD-TYPE | 93 | 121 | 101 |
Figure S58. Get High-res Image Gene #8: 'Amp Peak 8(6q21)' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D8V5.png)
P value = 4.64e-07 (Fisher's exact test), Q value = 0.00015
Table S59. Gene #8: 'Amp Peak 8(6q21)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 161 | 110 | 126 |
AMP PEAK 8(6Q21) CNV | 20 | 15 | 47 |
AMP PEAK 8(6Q21) WILD-TYPE | 141 | 95 | 79 |
Figure S59. Get High-res Image Gene #8: 'Amp Peak 8(6q21)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D8V6.png)
P value = 7.59e-22 (Fisher's exact test), Q value = 4.4e-19
Table S60. Gene #8: 'Amp Peak 8(6q21)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
AMP PEAK 8(6Q21) CNV | 95 | 9 | 51 |
AMP PEAK 8(6Q21) WILD-TYPE | 139 | 139 | 395 |
Figure S60. Get High-res Image Gene #8: 'Amp Peak 8(6q21)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D8V7.png)
P value = 2.72e-18 (Fisher's exact test), Q value = 1.5e-15
Table S61. Gene #8: 'Amp Peak 8(6q21)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
AMP PEAK 8(6Q21) CNV | 15 | 58 | 82 |
AMP PEAK 8(6Q21) WILD-TYPE | 201 | 350 | 122 |
Figure S61. Get High-res Image Gene #8: 'Amp Peak 8(6q21)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D8V8.png)
P value = 3.42e-19 (Fisher's exact test), Q value = 1.9e-16
Table S62. Gene #8: 'Amp Peak 8(6q21)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
AMP PEAK 8(6Q21) CNV | 21 | 41 | 95 |
AMP PEAK 8(6Q21) WILD-TYPE | 213 | 351 | 160 |
Figure S62. Get High-res Image Gene #8: 'Amp Peak 8(6q21)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D8V9.png)
P value = 4.33e-23 (Fisher's exact test), Q value = 2.6e-20
Table S63. Gene #8: 'Amp Peak 8(6q21)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
AMP PEAK 8(6Q21) CNV | 41 | 21 | 95 |
AMP PEAK 8(6Q21) WILD-TYPE | 321 | 263 | 140 |
Figure S63. Get High-res Image Gene #8: 'Amp Peak 8(6q21)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D8V10.png)
P value = 1.64e-06 (Chi-square test), Q value = 5e-04
Table S64. Gene #9: 'Amp Peak 9(8p11.23)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
AMP PEAK 9(8P11.23) CNV | 76 | 17 | 12 | 30 | 23 | 5 | 34 | 9 |
AMP PEAK 9(8P11.23) WILD-TYPE | 48 | 19 | 11 | 65 | 49 | 15 | 69 | 31 |
Figure S64. Get High-res Image Gene #9: 'Amp Peak 9(8p11.23)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D9V1.png)
P value = 1.44e-24 (Chi-square test), Q value = 8.5e-22
Table S65. Gene #9: 'Amp Peak 9(8p11.23)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
AMP PEAK 9(8P11.23) CNV | 94 | 111 | 32 | 61 | 48 |
AMP PEAK 9(8P11.23) WILD-TYPE | 253 | 111 | 40 | 162 | 1 |
Figure S65. Get High-res Image Gene #9: 'Amp Peak 9(8p11.23)' versus Molecular Subtype #3: 'CN_CNMF'
![](D9V3.png)
P value = 1.22e-12 (Chi-square test), Q value = 5.6e-10
Table S66. Gene #9: 'Amp Peak 9(8p11.23)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
AMP PEAK 9(8P11.23) CNV | 32 | 28 | 37 | 88 | 12 | 29 |
AMP PEAK 9(8P11.23) WILD-TYPE | 69 | 111 | 56 | 49 | 28 | 68 |
Figure S66. Get High-res Image Gene #9: 'Amp Peak 9(8p11.23)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D9V4.png)
P value = 0.000227 (Fisher's exact test), Q value = 0.049
Table S67. Gene #9: 'Amp Peak 9(8p11.23)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
AMP PEAK 9(8P11.23) CNV | 78 | 43 | 202 |
AMP PEAK 9(8P11.23) WILD-TYPE | 156 | 105 | 244 |
Figure S67. Get High-res Image Gene #9: 'Amp Peak 9(8p11.23)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D9V7.png)
P value = 3.34e-05 (Fisher's exact test), Q value = 0.0085
Table S68. Gene #9: 'Amp Peak 9(8p11.23)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
AMP PEAK 9(8P11.23) CNV | 67 | 191 | 65 |
AMP PEAK 9(8P11.23) WILD-TYPE | 149 | 217 | 139 |
Figure S68. Get High-res Image Gene #9: 'Amp Peak 9(8p11.23)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D9V8.png)
P value = 1.01e-22 (Chi-square test), Q value = 5.9e-20
Table S69. Gene #10: 'Amp Peak 10(8p11.21)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
AMP PEAK 10(8P11.21) CNV | 91 | 94 | 39 | 81 | 49 |
AMP PEAK 10(8P11.21) WILD-TYPE | 256 | 128 | 33 | 142 | 0 |
Figure S69. Get High-res Image Gene #10: 'Amp Peak 10(8p11.21)' versus Molecular Subtype #3: 'CN_CNMF'
![](D10V3.png)
P value = 4.03e-08 (Chi-square test), Q value = 1.5e-05
Table S70. Gene #10: 'Amp Peak 10(8p11.21)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
AMP PEAK 10(8P11.21) CNV | 51 | 29 | 35 | 74 | 10 | 32 |
AMP PEAK 10(8P11.21) WILD-TYPE | 50 | 110 | 58 | 63 | 30 | 65 |
Figure S70. Get High-res Image Gene #10: 'Amp Peak 10(8p11.21)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D10V4.png)
P value = 0.000224 (Fisher's exact test), Q value = 0.049
Table S71. Gene #10: 'Amp Peak 10(8p11.21)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
AMP PEAK 10(8P11.21) CNV | 104 | 37 | 185 |
AMP PEAK 10(8P11.21) WILD-TYPE | 130 | 111 | 261 |
Figure S71. Get High-res Image Gene #10: 'Amp Peak 10(8p11.21)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D10V7.png)
P value = 0.000104 (Fisher's exact test), Q value = 0.024
Table S72. Gene #10: 'Amp Peak 10(8p11.21)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
AMP PEAK 10(8P11.21) CNV | 59 | 179 | 88 |
AMP PEAK 10(8P11.21) WILD-TYPE | 157 | 229 | 116 |
Figure S72. Get High-res Image Gene #10: 'Amp Peak 10(8p11.21)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D10V8.png)
P value = 1.17e-16 (Chi-square test), Q value = 6.3e-14
Table S73. Gene #11: 'Amp Peak 11(8q24.21)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
AMP PEAK 11(8Q24.21) CNV | 101 | 21 | 17 | 83 | 56 | 17 | 42 | 14 |
AMP PEAK 11(8Q24.21) WILD-TYPE | 23 | 15 | 6 | 12 | 16 | 3 | 61 | 26 |
Figure S73. Get High-res Image Gene #11: 'Amp Peak 11(8q24.21)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D11V1.png)
P value = 2.62e-07 (Fisher's exact test), Q value = 8.9e-05
Table S74. Gene #11: 'Amp Peak 11(8q24.21)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 125 | 248 |
AMP PEAK 11(8Q24.21) CNV | 73 | 104 | 174 |
AMP PEAK 11(8Q24.21) WILD-TYPE | 67 | 21 | 74 |
Figure S74. Get High-res Image Gene #11: 'Amp Peak 11(8q24.21)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D11V2.png)
P value = 2.63e-43 (Chi-square test), Q value = 1.7e-40
Table S75. Gene #11: 'Amp Peak 11(8q24.21)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
AMP PEAK 11(8Q24.21) CNV | 132 | 163 | 39 | 203 | 47 |
AMP PEAK 11(8Q24.21) WILD-TYPE | 215 | 59 | 33 | 20 | 2 |
Figure S75. Get High-res Image Gene #11: 'Amp Peak 11(8q24.21)' versus Molecular Subtype #3: 'CN_CNMF'
![](D11V3.png)
P value = 1.7e-27 (Chi-square test), Q value = 1e-24
Table S76. Gene #11: 'Amp Peak 11(8q24.21)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
AMP PEAK 11(8Q24.21) CNV | 91 | 36 | 62 | 108 | 17 | 50 |
AMP PEAK 11(8Q24.21) WILD-TYPE | 10 | 103 | 31 | 29 | 23 | 47 |
Figure S76. Get High-res Image Gene #11: 'Amp Peak 11(8q24.21)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D11V4.png)
P value = 4.58e-08 (Fisher's exact test), Q value = 1.7e-05
Table S77. Gene #11: 'Amp Peak 11(8q24.21)' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 147 | 133 | 117 |
AMP PEAK 11(8Q24.21) CNV | 125 | 72 | 76 |
AMP PEAK 11(8Q24.21) WILD-TYPE | 22 | 61 | 41 |
Figure S77. Get High-res Image Gene #11: 'Amp Peak 11(8q24.21)' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D11V5.png)
P value = 9.36e-07 (Fisher's exact test), Q value = 3e-04
Table S78. Gene #11: 'Amp Peak 11(8q24.21)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 161 | 110 | 126 |
AMP PEAK 11(8Q24.21) CNV | 102 | 63 | 108 |
AMP PEAK 11(8Q24.21) WILD-TYPE | 59 | 47 | 18 |
Figure S78. Get High-res Image Gene #11: 'Amp Peak 11(8q24.21)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D11V6.png)
P value = 3.47e-21 (Fisher's exact test), Q value = 2e-18
Table S79. Gene #11: 'Amp Peak 11(8q24.21)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
AMP PEAK 11(8Q24.21) CNV | 202 | 59 | 278 |
AMP PEAK 11(8Q24.21) WILD-TYPE | 32 | 89 | 168 |
Figure S79. Get High-res Image Gene #11: 'Amp Peak 11(8q24.21)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D11V7.png)
P value = 5.54e-15 (Fisher's exact test), Q value = 2.8e-12
Table S80. Gene #11: 'Amp Peak 11(8q24.21)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
AMP PEAK 11(8Q24.21) CNV | 101 | 267 | 171 |
AMP PEAK 11(8Q24.21) WILD-TYPE | 115 | 141 | 33 |
Figure S80. Get High-res Image Gene #11: 'Amp Peak 11(8q24.21)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D11V8.png)
P value = 1.31e-21 (Fisher's exact test), Q value = 7.6e-19
Table S81. Gene #11: 'Amp Peak 11(8q24.21)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
AMP PEAK 11(8Q24.21) CNV | 111 | 233 | 221 |
AMP PEAK 11(8Q24.21) WILD-TYPE | 123 | 159 | 34 |
Figure S81. Get High-res Image Gene #11: 'Amp Peak 11(8q24.21)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D11V9.png)
P value = 2.37e-19 (Fisher's exact test), Q value = 1.3e-16
Table S82. Gene #11: 'Amp Peak 11(8q24.21)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
AMP PEAK 11(8Q24.21) CNV | 222 | 140 | 203 |
AMP PEAK 11(8Q24.21) WILD-TYPE | 140 | 144 | 32 |
Figure S82. Get High-res Image Gene #11: 'Amp Peak 11(8q24.21)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D11V10.png)
P value = 1.72e-21 (Chi-square test), Q value = 9.9e-19
Table S83. Gene #12: 'Amp Peak 12(10p15.1)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
AMP PEAK 12(10P15.1) CNV | 28 | 4 | 4 | 67 | 34 | 6 | 11 | 7 |
AMP PEAK 12(10P15.1) WILD-TYPE | 96 | 32 | 19 | 28 | 38 | 14 | 92 | 33 |
Figure S83. Get High-res Image Gene #12: 'Amp Peak 12(10p15.1)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D12V1.png)
P value = 1.06e-18 (Fisher's exact test), Q value = 5.9e-16
Table S84. Gene #12: 'Amp Peak 12(10p15.1)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 125 | 248 |
AMP PEAK 12(10P15.1) CNV | 24 | 81 | 56 |
AMP PEAK 12(10P15.1) WILD-TYPE | 116 | 44 | 192 |
Figure S84. Get High-res Image Gene #12: 'Amp Peak 12(10p15.1)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D12V2.png)
P value = 9.95e-35 (Chi-square test), Q value = 6.1e-32
Table S85. Gene #12: 'Amp Peak 12(10p15.1)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
AMP PEAK 12(10P15.1) CNV | 40 | 55 | 17 | 135 | 11 |
AMP PEAK 12(10P15.1) WILD-TYPE | 307 | 167 | 55 | 88 | 38 |
Figure S85. Get High-res Image Gene #12: 'Amp Peak 12(10p15.1)' versus Molecular Subtype #3: 'CN_CNMF'
![](D12V3.png)
P value = 1.93e-26 (Chi-square test), Q value = 1.2e-23
Table S86. Gene #12: 'Amp Peak 12(10p15.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
AMP PEAK 12(10P15.1) CNV | 67 | 6 | 23 | 33 | 2 | 24 |
AMP PEAK 12(10P15.1) WILD-TYPE | 34 | 133 | 70 | 104 | 38 | 73 |
Figure S86. Get High-res Image Gene #12: 'Amp Peak 12(10p15.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D12V4.png)
P value = 7e-11 (Fisher's exact test), Q value = 3e-08
Table S87. Gene #12: 'Amp Peak 12(10p15.1)' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 147 | 133 | 117 |
AMP PEAK 12(10P15.1) CNV | 78 | 22 | 29 |
AMP PEAK 12(10P15.1) WILD-TYPE | 69 | 111 | 88 |
Figure S87. Get High-res Image Gene #12: 'Amp Peak 12(10p15.1)' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D12V5.png)
P value = 2.33e-12 (Fisher's exact test), Q value = 1.1e-09
Table S88. Gene #12: 'Amp Peak 12(10p15.1)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 161 | 110 | 126 |
AMP PEAK 12(10P15.1) CNV | 30 | 26 | 73 |
AMP PEAK 12(10P15.1) WILD-TYPE | 131 | 84 | 53 |
Figure S88. Get High-res Image Gene #12: 'Amp Peak 12(10p15.1)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D12V6.png)
P value = 2.05e-28 (Fisher's exact test), Q value = 1.2e-25
Table S89. Gene #12: 'Amp Peak 12(10p15.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
AMP PEAK 12(10P15.1) CNV | 135 | 22 | 81 |
AMP PEAK 12(10P15.1) WILD-TYPE | 99 | 126 | 365 |
Figure S89. Get High-res Image Gene #12: 'Amp Peak 12(10p15.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D12V7.png)
P value = 1.17e-28 (Fisher's exact test), Q value = 7.1e-26
Table S90. Gene #12: 'Amp Peak 12(10p15.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
AMP PEAK 12(10P15.1) CNV | 33 | 81 | 124 |
AMP PEAK 12(10P15.1) WILD-TYPE | 183 | 327 | 80 |
Figure S90. Get High-res Image Gene #12: 'Amp Peak 12(10p15.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D12V8.png)
P value = 6.23e-28 (Fisher's exact test), Q value = 3.8e-25
Table S91. Gene #12: 'Amp Peak 12(10p15.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
AMP PEAK 12(10P15.1) CNV | 38 | 68 | 141 |
AMP PEAK 12(10P15.1) WILD-TYPE | 196 | 324 | 114 |
Figure S91. Get High-res Image Gene #12: 'Amp Peak 12(10p15.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D12V9.png)
P value = 1.2e-30 (Fisher's exact test), Q value = 7.3e-28
Table S92. Gene #12: 'Amp Peak 12(10p15.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
AMP PEAK 12(10P15.1) CNV | 73 | 38 | 136 |
AMP PEAK 12(10P15.1) WILD-TYPE | 289 | 246 | 99 |
Figure S92. Get High-res Image Gene #12: 'Amp Peak 12(10p15.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D12V10.png)
P value = 2.2e-05 (Chi-square test), Q value = 0.0058
Table S93. Gene #13: 'Amp Peak 13(10q22.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
AMP PEAK 13(10Q22.3) CNV | 17 | 2 | 5 | 18 | 23 | 8 | 8 | 3 |
AMP PEAK 13(10Q22.3) WILD-TYPE | 107 | 34 | 18 | 77 | 49 | 12 | 95 | 37 |
Figure S93. Get High-res Image Gene #13: 'Amp Peak 13(10q22.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D13V1.png)
P value = 8.18e-09 (Chi-square test), Q value = 3.2e-06
Table S94. Gene #13: 'Amp Peak 13(10q22.3)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
AMP PEAK 13(10Q22.3) CNV | 23 | 31 | 12 | 59 | 7 |
AMP PEAK 13(10Q22.3) WILD-TYPE | 324 | 191 | 60 | 164 | 42 |
Figure S94. Get High-res Image Gene #13: 'Amp Peak 13(10q22.3)' versus Molecular Subtype #3: 'CN_CNMF'
![](D13V3.png)
P value = 0.000149 (Chi-square test), Q value = 0.034
Table S95. Gene #13: 'Amp Peak 13(10q22.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
AMP PEAK 13(10Q22.3) CNV | 23 | 5 | 16 | 21 | 2 | 10 |
AMP PEAK 13(10Q22.3) WILD-TYPE | 78 | 134 | 77 | 116 | 38 | 87 |
Figure S95. Get High-res Image Gene #13: 'Amp Peak 13(10q22.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D13V4.png)
P value = 1.83e-07 (Fisher's exact test), Q value = 6.3e-05
Table S96. Gene #13: 'Amp Peak 13(10q22.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
AMP PEAK 13(10Q22.3) CNV | 61 | 11 | 52 |
AMP PEAK 13(10Q22.3) WILD-TYPE | 173 | 137 | 394 |
Figure S96. Get High-res Image Gene #13: 'Amp Peak 13(10q22.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D13V7.png)
P value = 0.000689 (Fisher's exact test), Q value = 0.13
Table S97. Gene #13: 'Amp Peak 13(10q22.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
AMP PEAK 13(10Q22.3) CNV | 20 | 58 | 46 |
AMP PEAK 13(10Q22.3) WILD-TYPE | 196 | 350 | 158 |
Figure S97. Get High-res Image Gene #13: 'Amp Peak 13(10q22.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D13V8.png)
P value = 3.75e-05 (Fisher's exact test), Q value = 0.0095
Table S98. Gene #13: 'Amp Peak 13(10q22.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
AMP PEAK 13(10Q22.3) CNV | 21 | 48 | 58 |
AMP PEAK 13(10Q22.3) WILD-TYPE | 213 | 344 | 197 |
Figure S98. Get High-res Image Gene #13: 'Amp Peak 13(10q22.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D13V9.png)
P value = 0.000675 (Fisher's exact test), Q value = 0.13
Table S99. Gene #13: 'Amp Peak 13(10q22.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
AMP PEAK 13(10Q22.3) CNV | 48 | 28 | 51 |
AMP PEAK 13(10Q22.3) WILD-TYPE | 314 | 256 | 184 |
Figure S99. Get High-res Image Gene #13: 'Amp Peak 13(10q22.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D13V10.png)
P value = 1.84e-10 (Chi-square test), Q value = 7.7e-08
Table S100. Gene #14: 'Amp Peak 14(11p13)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
AMP PEAK 14(11P13) CNV | 33 | 68 | 13 | 67 | 11 |
AMP PEAK 14(11P13) WILD-TYPE | 314 | 154 | 59 | 156 | 38 |
Figure S100. Get High-res Image Gene #14: 'Amp Peak 14(11p13)' versus Molecular Subtype #3: 'CN_CNMF'
![](D14V3.png)
P value = 4.84e-05 (Chi-square test), Q value = 0.012
Table S101. Gene #14: 'Amp Peak 14(11p13)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
AMP PEAK 14(11P13) CNV | 27 | 16 | 16 | 44 | 3 | 15 |
AMP PEAK 14(11P13) WILD-TYPE | 74 | 123 | 77 | 93 | 37 | 82 |
Figure S101. Get High-res Image Gene #14: 'Amp Peak 14(11p13)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D14V4.png)
P value = 2.61e-05 (Fisher's exact test), Q value = 0.0067
Table S102. Gene #14: 'Amp Peak 14(11p13)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
AMP PEAK 14(11P13) CNV | 69 | 15 | 99 |
AMP PEAK 14(11P13) WILD-TYPE | 165 | 133 | 347 |
Figure S102. Get High-res Image Gene #14: 'Amp Peak 14(11p13)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D14V7.png)
P value = 1.33e-06 (Fisher's exact test), Q value = 0.00042
Table S103. Gene #14: 'Amp Peak 14(11p13)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
AMP PEAK 14(11P13) CNV | 29 | 77 | 80 |
AMP PEAK 14(11P13) WILD-TYPE | 205 | 315 | 175 |
Figure S103. Get High-res Image Gene #14: 'Amp Peak 14(11p13)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D14V9.png)
P value = 1.91e-08 (Fisher's exact test), Q value = 7.2e-06
Table S104. Gene #14: 'Amp Peak 14(11p13)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
AMP PEAK 14(11P13) CNV | 80 | 31 | 75 |
AMP PEAK 14(11P13) WILD-TYPE | 282 | 253 | 160 |
Figure S104. Get High-res Image Gene #14: 'Amp Peak 14(11p13)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D14V10.png)
P value = 4.91e-41 (Chi-square test), Q value = 3.1e-38
Table S105. Gene #15: 'Amp Peak 15(11q13.3)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
AMP PEAK 15(11Q13.3) CNV | 53 | 163 | 28 | 89 | 16 |
AMP PEAK 15(11Q13.3) WILD-TYPE | 294 | 59 | 44 | 134 | 33 |
Figure S105. Get High-res Image Gene #15: 'Amp Peak 15(11q13.3)' versus Molecular Subtype #3: 'CN_CNMF'
![](D15V3.png)
P value = 4e-10 (Chi-square test), Q value = 1.7e-07
Table S106. Gene #15: 'Amp Peak 15(11q13.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
AMP PEAK 15(11Q13.3) CNV | 37 | 31 | 45 | 75 | 11 | 18 |
AMP PEAK 15(11Q13.3) WILD-TYPE | 64 | 108 | 48 | 62 | 29 | 79 |
Figure S106. Get High-res Image Gene #15: 'Amp Peak 15(11q13.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D15V4.png)
P value = 0.000292 (Fisher's exact test), Q value = 0.06
Table S107. Gene #15: 'Amp Peak 15(11q13.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
AMP PEAK 15(11Q13.3) CNV | 64 | 160 | 111 |
AMP PEAK 15(11Q13.3) WILD-TYPE | 170 | 232 | 144 |
Figure S107. Get High-res Image Gene #15: 'Amp Peak 15(11q13.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D15V9.png)
P value = 1.8e-19 (Chi-square test), Q value = 1e-16
Table S108. Gene #16: 'Amp Peak 16(11q14.1)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
AMP PEAK 16(11Q14.1) CNV | 31 | 89 | 19 | 85 | 10 |
AMP PEAK 16(11Q14.1) WILD-TYPE | 316 | 133 | 53 | 138 | 39 |
Figure S108. Get High-res Image Gene #16: 'Amp Peak 16(11q14.1)' versus Molecular Subtype #3: 'CN_CNMF'
![](D16V3.png)
P value = 7.93e-06 (Chi-square test), Q value = 0.0022
Table S109. Gene #16: 'Amp Peak 16(11q14.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
AMP PEAK 16(11Q14.1) CNV | 38 | 19 | 32 | 32 | 7 | 13 |
AMP PEAK 16(11Q14.1) WILD-TYPE | 63 | 120 | 61 | 105 | 33 | 84 |
Figure S109. Get High-res Image Gene #16: 'Amp Peak 16(11q14.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D16V4.png)
P value = 8.57e-05 (Fisher's exact test), Q value = 0.02
Table S110. Gene #16: 'Amp Peak 16(11q14.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
AMP PEAK 16(11Q14.1) CNV | 86 | 27 | 107 |
AMP PEAK 16(11Q14.1) WILD-TYPE | 148 | 121 | 339 |
Figure S110. Get High-res Image Gene #16: 'Amp Peak 16(11q14.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D16V7.png)
P value = 8.98e-07 (Fisher's exact test), Q value = 0.00029
Table S111. Gene #16: 'Amp Peak 16(11q14.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
AMP PEAK 16(11Q14.1) CNV | 40 | 90 | 95 |
AMP PEAK 16(11Q14.1) WILD-TYPE | 194 | 302 | 160 |
Figure S111. Get High-res Image Gene #16: 'Amp Peak 16(11q14.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D16V9.png)
P value = 1.39e-05 (Fisher's exact test), Q value = 0.0037
Table S112. Gene #16: 'Amp Peak 16(11q14.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
AMP PEAK 16(11Q14.1) CNV | 89 | 51 | 85 |
AMP PEAK 16(11Q14.1) WILD-TYPE | 273 | 233 | 150 |
Figure S112. Get High-res Image Gene #16: 'Amp Peak 16(11q14.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D16V10.png)
P value = 1.91e-12 (Chi-square test), Q value = 8.8e-10
Table S113. Gene #17: 'Amp Peak 17(12p13.33)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
AMP PEAK 17(12P13.33) CNV | 37 | 5 | 3 | 53 | 29 | 3 | 13 | 3 |
AMP PEAK 17(12P13.33) WILD-TYPE | 87 | 31 | 20 | 42 | 43 | 17 | 90 | 37 |
Figure S113. Get High-res Image Gene #17: 'Amp Peak 17(12p13.33)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D17V1.png)
P value = 2.53e-11 (Fisher's exact test), Q value = 1.1e-08
Table S114. Gene #17: 'Amp Peak 17(12p13.33)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 125 | 248 |
AMP PEAK 17(12P13.33) CNV | 15 | 61 | 70 |
AMP PEAK 17(12P13.33) WILD-TYPE | 125 | 64 | 178 |
Figure S114. Get High-res Image Gene #17: 'Amp Peak 17(12p13.33)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D17V2.png)
P value = 1.68e-28 (Chi-square test), Q value = 1e-25
Table S115. Gene #17: 'Amp Peak 17(12p13.33)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
AMP PEAK 17(12P13.33) CNV | 23 | 68 | 22 | 111 | 14 |
AMP PEAK 17(12P13.33) WILD-TYPE | 324 | 154 | 50 | 112 | 35 |
Figure S115. Get High-res Image Gene #17: 'Amp Peak 17(12p13.33)' versus Molecular Subtype #3: 'CN_CNMF'
![](D17V3.png)
P value = 7.29e-17 (Chi-square test), Q value = 3.9e-14
Table S116. Gene #17: 'Amp Peak 17(12p13.33)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
AMP PEAK 17(12P13.33) CNV | 54 | 13 | 20 | 44 | 2 | 12 |
AMP PEAK 17(12P13.33) WILD-TYPE | 47 | 126 | 73 | 93 | 38 | 85 |
Figure S116. Get High-res Image Gene #17: 'Amp Peak 17(12p13.33)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D17V4.png)
P value = 2.7e-08 (Fisher's exact test), Q value = 1e-05
Table S117. Gene #17: 'Amp Peak 17(12p13.33)' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 147 | 133 | 117 |
AMP PEAK 17(12P13.33) CNV | 69 | 31 | 18 |
AMP PEAK 17(12P13.33) WILD-TYPE | 78 | 102 | 99 |
Figure S117. Get High-res Image Gene #17: 'Amp Peak 17(12p13.33)' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D17V5.png)
P value = 2.37e-07 (Fisher's exact test), Q value = 8.1e-05
Table S118. Gene #17: 'Amp Peak 17(12p13.33)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 161 | 110 | 126 |
AMP PEAK 17(12P13.33) CNV | 43 | 16 | 59 |
AMP PEAK 17(12P13.33) WILD-TYPE | 118 | 94 | 67 |
Figure S118. Get High-res Image Gene #17: 'Amp Peak 17(12p13.33)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D17V6.png)
P value = 1.67e-17 (Fisher's exact test), Q value = 9.1e-15
Table S119. Gene #17: 'Amp Peak 17(12p13.33)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
AMP PEAK 17(12P13.33) CNV | 107 | 12 | 96 |
AMP PEAK 17(12P13.33) WILD-TYPE | 127 | 136 | 350 |
Figure S119. Get High-res Image Gene #17: 'Amp Peak 17(12p13.33)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D17V7.png)
P value = 1.45e-15 (Fisher's exact test), Q value = 7.6e-13
Table S120. Gene #17: 'Amp Peak 17(12p13.33)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
AMP PEAK 17(12P13.33) CNV | 24 | 97 | 94 |
AMP PEAK 17(12P13.33) WILD-TYPE | 192 | 311 | 110 |
Figure S120. Get High-res Image Gene #17: 'Amp Peak 17(12p13.33)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D17V8.png)
P value = 9.18e-22 (Fisher's exact test), Q value = 5.3e-19
Table S121. Gene #17: 'Amp Peak 17(12p13.33)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
AMP PEAK 17(12P13.33) CNV | 27 | 76 | 123 |
AMP PEAK 17(12P13.33) WILD-TYPE | 207 | 316 | 132 |
Figure S121. Get High-res Image Gene #17: 'Amp Peak 17(12p13.33)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D17V9.png)
P value = 5.5e-18 (Fisher's exact test), Q value = 3e-15
Table S122. Gene #17: 'Amp Peak 17(12p13.33)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
AMP PEAK 17(12P13.33) CNV | 73 | 41 | 112 |
AMP PEAK 17(12P13.33) WILD-TYPE | 289 | 243 | 123 |
Figure S122. Get High-res Image Gene #17: 'Amp Peak 17(12p13.33)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D17V10.png)
P value = 1.81e-08 (Chi-square test), Q value = 6.8e-06
Table S123. Gene #18: 'Amp Peak 18(12q15)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
AMP PEAK 18(12Q15) CNV | 56 | 7 | 3 | 20 | 35 | 7 | 16 | 6 |
AMP PEAK 18(12Q15) WILD-TYPE | 68 | 29 | 20 | 75 | 37 | 13 | 87 | 34 |
Figure S123. Get High-res Image Gene #18: 'Amp Peak 18(12q15)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D18V1.png)
P value = 0.000131 (Fisher's exact test), Q value = 0.03
Table S124. Gene #18: 'Amp Peak 18(12q15)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 125 | 248 |
AMP PEAK 18(12Q15) CNV | 27 | 29 | 94 |
AMP PEAK 18(12Q15) WILD-TYPE | 113 | 96 | 154 |
Figure S124. Get High-res Image Gene #18: 'Amp Peak 18(12q15)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D18V2.png)
P value = 1.86e-25 (Chi-square test), Q value = 1.1e-22
Table S125. Gene #18: 'Amp Peak 18(12q15)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
AMP PEAK 18(12Q15) CNV | 26 | 106 | 26 | 65 | 12 |
AMP PEAK 18(12Q15) WILD-TYPE | 321 | 116 | 46 | 158 | 37 |
Figure S125. Get High-res Image Gene #18: 'Amp Peak 18(12q15)' versus Molecular Subtype #3: 'CN_CNMF'
![](D18V3.png)
P value = 1.49e-13 (Chi-square test), Q value = 7.2e-11
Table S126. Gene #18: 'Amp Peak 18(12q15)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
AMP PEAK 18(12Q15) CNV | 17 | 18 | 19 | 66 | 6 | 11 |
AMP PEAK 18(12Q15) WILD-TYPE | 84 | 121 | 74 | 71 | 34 | 86 |
Figure S126. Get High-res Image Gene #18: 'Amp Peak 18(12q15)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D18V4.png)
P value = 6.02e-06 (Fisher's exact test), Q value = 0.0017
Table S127. Gene #18: 'Amp Peak 18(12q15)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
AMP PEAK 18(12Q15) CNV | 63 | 18 | 142 |
AMP PEAK 18(12Q15) WILD-TYPE | 171 | 130 | 304 |
Figure S127. Get High-res Image Gene #18: 'Amp Peak 18(12q15)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D18V7.png)
P value = 1.71e-05 (Fisher's exact test), Q value = 0.0046
Table S128. Gene #18: 'Amp Peak 18(12q15)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
AMP PEAK 18(12Q15) CNV | 37 | 138 | 48 |
AMP PEAK 18(12Q15) WILD-TYPE | 179 | 270 | 156 |
Figure S128. Get High-res Image Gene #18: 'Amp Peak 18(12q15)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D18V8.png)
P value = 9.16e-08 (Fisher's exact test), Q value = 3.3e-05
Table S129. Gene #18: 'Amp Peak 18(12q15)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
AMP PEAK 18(12Q15) CNV | 29 | 118 | 79 |
AMP PEAK 18(12Q15) WILD-TYPE | 205 | 274 | 176 |
Figure S129. Get High-res Image Gene #18: 'Amp Peak 18(12q15)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D18V9.png)
P value = 0.000644 (Fisher's exact test), Q value = 0.12
Table S130. Gene #18: 'Amp Peak 18(12q15)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
AMP PEAK 18(12Q15) CNV | 112 | 51 | 63 |
AMP PEAK 18(12Q15) WILD-TYPE | 250 | 233 | 172 |
Figure S130. Get High-res Image Gene #18: 'Amp Peak 18(12q15)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D18V10.png)
P value = 2.22e-05 (Chi-square test), Q value = 0.0059
Table S131. Gene #19: 'Amp Peak 19(13q12.3)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
AMP PEAK 19(13Q12.3) CNV | 23 | 38 | 13 | 46 | 8 |
AMP PEAK 19(13Q12.3) WILD-TYPE | 324 | 184 | 59 | 177 | 41 |
Figure S131. Get High-res Image Gene #19: 'Amp Peak 19(13q12.3)' versus Molecular Subtype #3: 'CN_CNMF'
![](D19V3.png)
P value = 2.63e-05 (Fisher's exact test), Q value = 0.0068
Table S132. Gene #19: 'Amp Peak 19(13q12.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
AMP PEAK 19(13Q12.3) CNV | 45 | 6 | 70 |
AMP PEAK 19(13Q12.3) WILD-TYPE | 189 | 142 | 376 |
Figure S132. Get High-res Image Gene #19: 'Amp Peak 19(13q12.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D19V7.png)
P value = 0.000196 (Fisher's exact test), Q value = 0.043
Table S133. Gene #19: 'Amp Peak 19(13q12.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
AMP PEAK 19(13Q12.3) CNV | 17 | 55 | 51 |
AMP PEAK 19(13Q12.3) WILD-TYPE | 217 | 337 | 204 |
Figure S133. Get High-res Image Gene #19: 'Amp Peak 19(13q12.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D19V9.png)
P value = 0.00043 (Fisher's exact test), Q value = 0.086
Table S134. Gene #19: 'Amp Peak 19(13q12.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
AMP PEAK 19(13Q12.3) CNV | 51 | 24 | 48 |
AMP PEAK 19(13Q12.3) WILD-TYPE | 311 | 260 | 187 |
Figure S134. Get High-res Image Gene #19: 'Amp Peak 19(13q12.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D19V10.png)
P value = 9.14e-10 (Chi-square test), Q value = 3.7e-07
Table S135. Gene #20: 'Amp Peak 20(13q34)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
AMP PEAK 20(13Q34) CNV | 19 | 3 | 3 | 42 | 10 | 4 | 15 | 0 |
AMP PEAK 20(13Q34) WILD-TYPE | 105 | 33 | 20 | 53 | 62 | 16 | 88 | 40 |
Figure S135. Get High-res Image Gene #20: 'Amp Peak 20(13q34)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D20V1.png)
P value = 5.78e-09 (Fisher's exact test), Q value = 2.3e-06
Table S136. Gene #20: 'Amp Peak 20(13q34)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 125 | 248 |
AMP PEAK 20(13Q34) CNV | 12 | 47 | 37 |
AMP PEAK 20(13Q34) WILD-TYPE | 128 | 78 | 211 |
Figure S136. Get High-res Image Gene #20: 'Amp Peak 20(13q34)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D20V2.png)
P value = 1.51e-17 (Chi-square test), Q value = 8.2e-15
Table S137. Gene #20: 'Amp Peak 20(13q34)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
AMP PEAK 20(13Q34) CNV | 28 | 33 | 9 | 83 | 6 |
AMP PEAK 20(13Q34) WILD-TYPE | 319 | 189 | 63 | 140 | 43 |
Figure S137. Get High-res Image Gene #20: 'Amp Peak 20(13q34)' versus Molecular Subtype #3: 'CN_CNMF'
![](D20V3.png)
P value = 1.33e-14 (Chi-square test), Q value = 6.7e-12
Table S138. Gene #20: 'Amp Peak 20(13q34)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
AMP PEAK 20(13Q34) CNV | 44 | 8 | 13 | 20 | 1 | 12 |
AMP PEAK 20(13Q34) WILD-TYPE | 57 | 131 | 80 | 117 | 39 | 85 |
Figure S138. Get High-res Image Gene #20: 'Amp Peak 20(13q34)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D20V4.png)
P value = 8.21e-06 (Fisher's exact test), Q value = 0.0023
Table S139. Gene #20: 'Amp Peak 20(13q34)' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 147 | 133 | 117 |
AMP PEAK 20(13Q34) CNV | 48 | 22 | 11 |
AMP PEAK 20(13Q34) WILD-TYPE | 99 | 111 | 106 |
Figure S139. Get High-res Image Gene #20: 'Amp Peak 20(13q34)' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D20V5.png)
P value = 5.1e-08 (Fisher's exact test), Q value = 1.8e-05
Table S140. Gene #20: 'Amp Peak 20(13q34)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 161 | 110 | 126 |
AMP PEAK 20(13Q34) CNV | 25 | 9 | 47 |
AMP PEAK 20(13Q34) WILD-TYPE | 136 | 101 | 79 |
Figure S140. Get High-res Image Gene #20: 'Amp Peak 20(13q34)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D20V6.png)
P value = 8.44e-14 (Fisher's exact test), Q value = 4.1e-11
Table S141. Gene #20: 'Amp Peak 20(13q34)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
AMP PEAK 20(13Q34) CNV | 77 | 7 | 59 |
AMP PEAK 20(13Q34) WILD-TYPE | 157 | 141 | 387 |
Figure S141. Get High-res Image Gene #20: 'Amp Peak 20(13q34)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D20V7.png)
P value = 1.17e-14 (Fisher's exact test), Q value = 5.9e-12
Table S142. Gene #20: 'Amp Peak 20(13q34)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
AMP PEAK 20(13Q34) CNV | 15 | 55 | 73 |
AMP PEAK 20(13Q34) WILD-TYPE | 201 | 353 | 131 |
Figure S142. Get High-res Image Gene #20: 'Amp Peak 20(13q34)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D20V8.png)
P value = 1.41e-13 (Fisher's exact test), Q value = 6.8e-11
Table S143. Gene #20: 'Amp Peak 20(13q34)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
AMP PEAK 20(13Q34) CNV | 25 | 44 | 86 |
AMP PEAK 20(13Q34) WILD-TYPE | 209 | 348 | 169 |
Figure S143. Get High-res Image Gene #20: 'Amp Peak 20(13q34)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D20V9.png)
P value = 5.59e-20 (Fisher's exact test), Q value = 3.2e-17
Table S144. Gene #20: 'Amp Peak 20(13q34)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
AMP PEAK 20(13Q34) CNV | 47 | 19 | 89 |
AMP PEAK 20(13Q34) WILD-TYPE | 315 | 265 | 146 |
Figure S144. Get High-res Image Gene #20: 'Amp Peak 20(13q34)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D20V10.png)
P value = 0.000259 (Chi-square test), Q value = 0.055
Table S145. Gene #21: 'Amp Peak 21(14q21.1)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
AMP PEAK 21(14Q21.1) CNV | 35 | 7 | 5 | 11 | 26 | 6 | 20 | 1 |
AMP PEAK 21(14Q21.1) WILD-TYPE | 89 | 29 | 18 | 84 | 46 | 14 | 83 | 39 |
Figure S145. Get High-res Image Gene #21: 'Amp Peak 21(14q21.1)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D21V1.png)
P value = 1.97e-09 (Chi-square test), Q value = 7.9e-07
Table S146. Gene #21: 'Amp Peak 21(14q21.1)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
AMP PEAK 21(14Q21.1) CNV | 34 | 73 | 15 | 49 | 10 |
AMP PEAK 21(14Q21.1) WILD-TYPE | 313 | 149 | 57 | 174 | 39 |
Figure S146. Get High-res Image Gene #21: 'Amp Peak 21(14q21.1)' versus Molecular Subtype #3: 'CN_CNMF'
![](D21V3.png)
P value = 5.16e-05 (Chi-square test), Q value = 0.013
Table S147. Gene #21: 'Amp Peak 21(14q21.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
AMP PEAK 21(14Q21.1) CNV | 13 | 18 | 23 | 41 | 4 | 9 |
AMP PEAK 21(14Q21.1) WILD-TYPE | 88 | 121 | 70 | 96 | 36 | 88 |
Figure S147. Get High-res Image Gene #21: 'Amp Peak 21(14q21.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D21V4.png)
P value = 3.92e-05 (Fisher's exact test), Q value = 0.0099
Table S148. Gene #21: 'Amp Peak 21(14q21.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
AMP PEAK 21(14Q21.1) CNV | 42 | 15 | 117 |
AMP PEAK 21(14Q21.1) WILD-TYPE | 192 | 133 | 329 |
Figure S148. Get High-res Image Gene #21: 'Amp Peak 21(14q21.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D21V7.png)
P value = 2.45e-06 (Fisher's exact test), Q value = 0.00072
Table S149. Gene #21: 'Amp Peak 21(14q21.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
AMP PEAK 21(14Q21.1) CNV | 27 | 115 | 32 |
AMP PEAK 21(14Q21.1) WILD-TYPE | 189 | 293 | 172 |
Figure S149. Get High-res Image Gene #21: 'Amp Peak 21(14q21.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D21V8.png)
P value = 1.94e-06 (Fisher's exact test), Q value = 0.00058
Table S150. Gene #21: 'Amp Peak 21(14q21.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
AMP PEAK 21(14Q21.1) CNV | 21 | 95 | 58 |
AMP PEAK 21(14Q21.1) WILD-TYPE | 213 | 297 | 197 |
Figure S150. Get High-res Image Gene #21: 'Amp Peak 21(14q21.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D21V9.png)
P value = 3.31e-07 (Chi-square test), Q value = 0.00011
Table S151. Gene #22: 'Amp Peak 22(15q26.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
AMP PEAK 22(15Q26.3) CNV | 32 | 7 | 2 | 32 | 16 | 8 | 4 | 2 |
AMP PEAK 22(15Q26.3) WILD-TYPE | 92 | 29 | 21 | 63 | 56 | 12 | 99 | 38 |
Figure S151. Get High-res Image Gene #22: 'Amp Peak 22(15q26.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D22V1.png)
P value = 1.88e-15 (Chi-square test), Q value = 9.8e-13
Table S152. Gene #22: 'Amp Peak 22(15q26.3)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
AMP PEAK 22(15Q26.3) CNV | 30 | 47 | 6 | 79 | 4 |
AMP PEAK 22(15Q26.3) WILD-TYPE | 317 | 175 | 66 | 144 | 45 |
Figure S152. Get High-res Image Gene #22: 'Amp Peak 22(15q26.3)' versus Molecular Subtype #3: 'CN_CNMF'
![](D22V3.png)
P value = 0.000326 (Chi-square test), Q value = 0.067
Table S153. Gene #22: 'Amp Peak 22(15q26.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
AMP PEAK 22(15Q26.3) CNV | 26 | 6 | 17 | 26 | 6 | 14 |
AMP PEAK 22(15Q26.3) WILD-TYPE | 75 | 133 | 76 | 111 | 34 | 83 |
Figure S153. Get High-res Image Gene #22: 'Amp Peak 22(15q26.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D22V4.png)
P value = 0.000153 (Fisher's exact test), Q value = 0.035
Table S154. Gene #22: 'Amp Peak 22(15q26.3)' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 147 | 133 | 117 |
AMP PEAK 22(15Q26.3) CNV | 47 | 18 | 17 |
AMP PEAK 22(15Q26.3) WILD-TYPE | 100 | 115 | 100 |
Figure S154. Get High-res Image Gene #22: 'Amp Peak 22(15q26.3)' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D22V5.png)
P value = 2.07e-08 (Fisher's exact test), Q value = 7.7e-06
Table S155. Gene #22: 'Amp Peak 22(15q26.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
AMP PEAK 22(15Q26.3) CNV | 70 | 10 | 74 |
AMP PEAK 22(15Q26.3) WILD-TYPE | 164 | 138 | 372 |
Figure S155. Get High-res Image Gene #22: 'Amp Peak 22(15q26.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D22V7.png)
P value = 7.98e-06 (Fisher's exact test), Q value = 0.0022
Table S156. Gene #22: 'Amp Peak 22(15q26.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
AMP PEAK 22(15Q26.3) CNV | 24 | 70 | 60 |
AMP PEAK 22(15Q26.3) WILD-TYPE | 192 | 338 | 144 |
Figure S156. Get High-res Image Gene #22: 'Amp Peak 22(15q26.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D22V8.png)
P value = 5.92e-08 (Fisher's exact test), Q value = 2.1e-05
Table S157. Gene #22: 'Amp Peak 22(15q26.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
AMP PEAK 22(15Q26.3) CNV | 31 | 51 | 77 |
AMP PEAK 22(15Q26.3) WILD-TYPE | 203 | 341 | 178 |
Figure S157. Get High-res Image Gene #22: 'Amp Peak 22(15q26.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D22V9.png)
P value = 7.56e-09 (Fisher's exact test), Q value = 2.9e-06
Table S158. Gene #22: 'Amp Peak 22(15q26.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
AMP PEAK 22(15Q26.3) CNV | 59 | 28 | 72 |
AMP PEAK 22(15Q26.3) WILD-TYPE | 303 | 256 | 163 |
Figure S158. Get High-res Image Gene #22: 'Amp Peak 22(15q26.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D22V10.png)
P value = 1.49e-14 (Chi-square test), Q value = 7.5e-12
Table S159. Gene #23: 'Amp Peak 23(17q12)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
AMP PEAK 23(17Q12) CNV | 52 | 12 | 8 | 19 | 49 | 7 | 14 | 4 |
AMP PEAK 23(17Q12) WILD-TYPE | 72 | 24 | 15 | 76 | 23 | 13 | 89 | 36 |
Figure S159. Get High-res Image Gene #23: 'Amp Peak 23(17q12)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D23V1.png)
P value = 3e-04 (Fisher's exact test), Q value = 0.062
Table S160. Gene #23: 'Amp Peak 23(17q12)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 125 | 248 |
AMP PEAK 23(17Q12) CNV | 28 | 39 | 98 |
AMP PEAK 23(17Q12) WILD-TYPE | 112 | 86 | 150 |
Figure S160. Get High-res Image Gene #23: 'Amp Peak 23(17q12)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D23V2.png)
P value = 7.29e-34 (Chi-square test), Q value = 4.5e-31
Table S161. Gene #23: 'Amp Peak 23(17q12)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
AMP PEAK 23(17Q12) CNV | 55 | 146 | 22 | 57 | 15 |
AMP PEAK 23(17Q12) WILD-TYPE | 292 | 76 | 50 | 166 | 34 |
Figure S161. Get High-res Image Gene #23: 'Amp Peak 23(17q12)' versus Molecular Subtype #3: 'CN_CNMF'
![](D23V3.png)
P value = 5.76e-09 (Chi-square test), Q value = 2.3e-06
Table S162. Gene #23: 'Amp Peak 23(17q12)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
AMP PEAK 23(17Q12) CNV | 27 | 24 | 40 | 69 | 11 | 21 |
AMP PEAK 23(17Q12) WILD-TYPE | 74 | 115 | 53 | 68 | 29 | 76 |
Figure S162. Get High-res Image Gene #23: 'Amp Peak 23(17q12)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D23V4.png)
P value = 0.000101 (Fisher's exact test), Q value = 0.024
Table S163. Gene #23: 'Amp Peak 23(17q12)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
AMP PEAK 23(17Q12) CNV | 89 | 28 | 159 |
AMP PEAK 23(17Q12) WILD-TYPE | 145 | 120 | 287 |
Figure S163. Get High-res Image Gene #23: 'Amp Peak 23(17q12)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D23V7.png)
P value = 0.000454 (Fisher's exact test), Q value = 0.09
Table S164. Gene #23: 'Amp Peak 23(17q12)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
AMP PEAK 23(17Q12) CNV | 50 | 157 | 69 |
AMP PEAK 23(17Q12) WILD-TYPE | 166 | 251 | 135 |
Figure S164. Get High-res Image Gene #23: 'Amp Peak 23(17q12)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D23V8.png)
P value = 2.42e-14 (Chi-square test), Q value = 1.2e-11
Table S165. Gene #24: 'Amp Peak 24(17q23.1)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
AMP PEAK 24(17Q23.1) CNV | 81 | 17 | 8 | 29 | 43 | 11 | 16 | 10 |
AMP PEAK 24(17Q23.1) WILD-TYPE | 43 | 19 | 15 | 66 | 29 | 9 | 87 | 30 |
Figure S165. Get High-res Image Gene #24: 'Amp Peak 24(17q23.1)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D24V1.png)
P value = 6.19e-38 (Chi-square test), Q value = 3.8e-35
Table S166. Gene #24: 'Amp Peak 24(17q23.1)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
AMP PEAK 24(17Q23.1) CNV | 66 | 166 | 21 | 102 | 19 |
AMP PEAK 24(17Q23.1) WILD-TYPE | 281 | 56 | 51 | 121 | 30 |
Figure S166. Get High-res Image Gene #24: 'Amp Peak 24(17q23.1)' versus Molecular Subtype #3: 'CN_CNMF'
![](D24V3.png)
P value = 1.45e-10 (Chi-square test), Q value = 6.1e-08
Table S167. Gene #24: 'Amp Peak 24(17q23.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
AMP PEAK 24(17Q23.1) CNV | 42 | 31 | 40 | 85 | 17 | 25 |
AMP PEAK 24(17Q23.1) WILD-TYPE | 59 | 108 | 53 | 52 | 23 | 72 |
Figure S167. Get High-res Image Gene #24: 'Amp Peak 24(17q23.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D24V4.png)
P value = 0.000644 (Fisher's exact test), Q value = 0.12
Table S168. Gene #24: 'Amp Peak 24(17q23.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
AMP PEAK 24(17Q23.1) CNV | 99 | 43 | 209 |
AMP PEAK 24(17Q23.1) WILD-TYPE | 135 | 105 | 237 |
Figure S168. Get High-res Image Gene #24: 'Amp Peak 24(17q23.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D24V7.png)
P value = 3.1e-07 (Fisher's exact test), Q value = 1e-04
Table S169. Gene #24: 'Amp Peak 24(17q23.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
AMP PEAK 24(17Q23.1) CNV | 65 | 167 | 132 |
AMP PEAK 24(17Q23.1) WILD-TYPE | 169 | 225 | 123 |
Figure S169. Get High-res Image Gene #24: 'Amp Peak 24(17q23.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D24V9.png)
P value = 3.57e-06 (Fisher's exact test), Q value = 0.001
Table S170. Gene #24: 'Amp Peak 24(17q23.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
AMP PEAK 24(17Q23.1) CNV | 175 | 84 | 105 |
AMP PEAK 24(17Q23.1) WILD-TYPE | 187 | 200 | 130 |
Figure S170. Get High-res Image Gene #24: 'Amp Peak 24(17q23.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D24V10.png)
P value = 2.12e-12 (Chi-square test), Q value = 9.7e-10
Table S171. Gene #25: 'Amp Peak 25(19q12)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
AMP PEAK 25(19Q12) CNV | 30 | 4 | 4 | 56 | 20 | 7 | 14 | 5 |
AMP PEAK 25(19Q12) WILD-TYPE | 94 | 32 | 19 | 39 | 52 | 13 | 89 | 35 |
Figure S171. Get High-res Image Gene #25: 'Amp Peak 25(19q12)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D25V1.png)
P value = 9.11e-11 (Fisher's exact test), Q value = 3.9e-08
Table S172. Gene #25: 'Amp Peak 25(19q12)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 125 | 248 |
AMP PEAK 25(19Q12) CNV | 22 | 64 | 54 |
AMP PEAK 25(19Q12) WILD-TYPE | 118 | 61 | 194 |
Figure S172. Get High-res Image Gene #25: 'Amp Peak 25(19q12)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D25V2.png)
P value = 1.28e-21 (Chi-square test), Q value = 7.4e-19
Table S173. Gene #25: 'Amp Peak 25(19q12)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
AMP PEAK 25(19Q12) CNV | 41 | 44 | 26 | 108 | 14 |
AMP PEAK 25(19Q12) WILD-TYPE | 306 | 178 | 46 | 115 | 35 |
Figure S173. Get High-res Image Gene #25: 'Amp Peak 25(19q12)' versus Molecular Subtype #3: 'CN_CNMF'
![](D25V3.png)
P value = 4.2e-12 (Chi-square test), Q value = 1.9e-09
Table S174. Gene #25: 'Amp Peak 25(19q12)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
AMP PEAK 25(19Q12) CNV | 53 | 15 | 20 | 34 | 4 | 22 |
AMP PEAK 25(19Q12) WILD-TYPE | 48 | 124 | 73 | 103 | 36 | 75 |
Figure S174. Get High-res Image Gene #25: 'Amp Peak 25(19q12)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D25V4.png)
P value = 6.19e-07 (Fisher's exact test), Q value = 2e-04
Table S175. Gene #25: 'Amp Peak 25(19q12)' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 147 | 133 | 117 |
AMP PEAK 25(19Q12) CNV | 64 | 23 | 23 |
AMP PEAK 25(19Q12) WILD-TYPE | 83 | 110 | 94 |
Figure S175. Get High-res Image Gene #25: 'Amp Peak 25(19q12)' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D25V5.png)
P value = 9.68e-07 (Fisher's exact test), Q value = 0.00031
Table S176. Gene #25: 'Amp Peak 25(19q12)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 161 | 110 | 126 |
AMP PEAK 25(19Q12) CNV | 29 | 24 | 57 |
AMP PEAK 25(19Q12) WILD-TYPE | 132 | 86 | 69 |
Figure S176. Get High-res Image Gene #25: 'Amp Peak 25(19q12)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D25V6.png)
P value = 1.11e-15 (Fisher's exact test), Q value = 5.8e-13
Table S177. Gene #25: 'Amp Peak 25(19q12)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
AMP PEAK 25(19Q12) CNV | 109 | 26 | 79 |
AMP PEAK 25(19Q12) WILD-TYPE | 125 | 122 | 367 |
Figure S177. Get High-res Image Gene #25: 'Amp Peak 25(19q12)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D25V7.png)
P value = 2.08e-15 (Fisher's exact test), Q value = 1.1e-12
Table S178. Gene #25: 'Amp Peak 25(19q12)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
AMP PEAK 25(19Q12) CNV | 37 | 78 | 99 |
AMP PEAK 25(19Q12) WILD-TYPE | 179 | 330 | 105 |
Figure S178. Get High-res Image Gene #25: 'Amp Peak 25(19q12)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D25V8.png)
P value = 6.49e-13 (Fisher's exact test), Q value = 3e-10
Table S179. Gene #25: 'Amp Peak 25(19q12)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
AMP PEAK 25(19Q12) CNV | 45 | 71 | 111 |
AMP PEAK 25(19Q12) WILD-TYPE | 189 | 321 | 144 |
Figure S179. Get High-res Image Gene #25: 'Amp Peak 25(19q12)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D25V9.png)
P value = 2.82e-18 (Fisher's exact test), Q value = 1.6e-15
Table S180. Gene #25: 'Amp Peak 25(19q12)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
AMP PEAK 25(19Q12) CNV | 65 | 48 | 114 |
AMP PEAK 25(19Q12) WILD-TYPE | 297 | 236 | 121 |
Figure S180. Get High-res Image Gene #25: 'Amp Peak 25(19q12)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D25V10.png)
P value = 0.000775 (Chi-square test), Q value = 0.14
Table S181. Gene #26: 'Amp Peak 26(19q13.42)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
AMP PEAK 26(19Q13.42) CNV | 38 | 8 | 5 | 37 | 22 | 10 | 15 | 6 |
AMP PEAK 26(19Q13.42) WILD-TYPE | 86 | 28 | 18 | 58 | 50 | 10 | 88 | 34 |
Figure S181. Get High-res Image Gene #26: 'Amp Peak 26(19q13.42)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D26V1.png)
P value = 2.5e-14 (Chi-square test), Q value = 1.2e-11
Table S182. Gene #26: 'Amp Peak 26(19q13.42)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
AMP PEAK 26(19Q13.42) CNV | 41 | 59 | 27 | 92 | 16 |
AMP PEAK 26(19Q13.42) WILD-TYPE | 306 | 163 | 45 | 131 | 33 |
Figure S182. Get High-res Image Gene #26: 'Amp Peak 26(19q13.42)' versus Molecular Subtype #3: 'CN_CNMF'
![](D26V3.png)
P value = 6.23e-07 (Chi-square test), Q value = 2e-04
Table S183. Gene #26: 'Amp Peak 26(19q13.42)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
AMP PEAK 26(19Q13.42) CNV | 34 | 15 | 25 | 51 | 5 | 17 |
AMP PEAK 26(19Q13.42) WILD-TYPE | 67 | 124 | 68 | 86 | 35 | 80 |
Figure S183. Get High-res Image Gene #26: 'Amp Peak 26(19q13.42)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D26V4.png)
P value = 4.27e-06 (Fisher's exact test), Q value = 0.0012
Table S184. Gene #26: 'Amp Peak 26(19q13.42)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
AMP PEAK 26(19Q13.42) CNV | 43 | 91 | 95 |
AMP PEAK 26(19Q13.42) WILD-TYPE | 191 | 301 | 160 |
Figure S184. Get High-res Image Gene #26: 'Amp Peak 26(19q13.42)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D26V9.png)
P value = 1.35e-09 (Chi-square test), Q value = 5.4e-07
Table S185. Gene #27: 'Amp Peak 27(20q13.2)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
AMP PEAK 27(20Q13.2) CNV | 87 | 18 | 10 | 51 | 49 | 15 | 34 | 10 |
AMP PEAK 27(20Q13.2) WILD-TYPE | 37 | 18 | 13 | 44 | 23 | 5 | 69 | 30 |
Figure S185. Get High-res Image Gene #27: 'Amp Peak 27(20q13.2)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D27V1.png)
P value = 0.000278 (Fisher's exact test), Q value = 0.058
Table S186. Gene #27: 'Amp Peak 27(20q13.2)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 125 | 248 |
AMP PEAK 27(20Q13.2) CNV | 55 | 69 | 150 |
AMP PEAK 27(20Q13.2) WILD-TYPE | 85 | 56 | 98 |
Figure S186. Get High-res Image Gene #27: 'Amp Peak 27(20q13.2)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D27V2.png)
P value = 9.78e-50 (Chi-square test), Q value = 6.2e-47
Table S187. Gene #27: 'Amp Peak 27(20q13.2)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
AMP PEAK 27(20Q13.2) CNV | 67 | 170 | 43 | 158 | 27 |
AMP PEAK 27(20Q13.2) WILD-TYPE | 280 | 52 | 29 | 65 | 22 |
Figure S187. Get High-res Image Gene #27: 'Amp Peak 27(20q13.2)' versus Molecular Subtype #3: 'CN_CNMF'
![](D27V3.png)
P value = 5.18e-25 (Chi-square test), Q value = 3.1e-22
Table S188. Gene #27: 'Amp Peak 27(20q13.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
AMP PEAK 27(20Q13.2) CNV | 61 | 28 | 48 | 111 | 12 | 32 |
AMP PEAK 27(20Q13.2) WILD-TYPE | 40 | 111 | 45 | 26 | 28 | 65 |
Figure S188. Get High-res Image Gene #27: 'Amp Peak 27(20q13.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D27V4.png)
P value = 0.000604 (Fisher's exact test), Q value = 0.12
Table S189. Gene #27: 'Amp Peak 27(20q13.2)' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 147 | 133 | 117 |
AMP PEAK 27(20Q13.2) CNV | 99 | 67 | 53 |
AMP PEAK 27(20Q13.2) WILD-TYPE | 48 | 66 | 64 |
Figure S189. Get High-res Image Gene #27: 'Amp Peak 27(20q13.2)' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D27V5.png)
P value = 6.68e-09 (Fisher's exact test), Q value = 2.6e-06
Table S190. Gene #27: 'Amp Peak 27(20q13.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
AMP PEAK 27(20Q13.2) CNV | 140 | 45 | 253 |
AMP PEAK 27(20Q13.2) WILD-TYPE | 94 | 103 | 193 |
Figure S190. Get High-res Image Gene #27: 'Amp Peak 27(20q13.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D27V7.png)
P value = 2.14e-07 (Fisher's exact test), Q value = 7.3e-05
Table S191. Gene #27: 'Amp Peak 27(20q13.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
AMP PEAK 27(20Q13.2) CNV | 80 | 245 | 113 |
AMP PEAK 27(20Q13.2) WILD-TYPE | 136 | 163 | 91 |
Figure S191. Get High-res Image Gene #27: 'Amp Peak 27(20q13.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D27V8.png)
P value = 7.41e-10 (Fisher's exact test), Q value = 3e-07
Table S192. Gene #27: 'Amp Peak 27(20q13.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
AMP PEAK 27(20Q13.2) CNV | 80 | 214 | 159 |
AMP PEAK 27(20Q13.2) WILD-TYPE | 154 | 178 | 96 |
Figure S192. Get High-res Image Gene #27: 'Amp Peak 27(20q13.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D27V9.png)
P value = 1.16e-06 (Fisher's exact test), Q value = 0.00036
Table S193. Gene #27: 'Amp Peak 27(20q13.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
AMP PEAK 27(20Q13.2) CNV | 205 | 110 | 138 |
AMP PEAK 27(20Q13.2) WILD-TYPE | 157 | 174 | 97 |
Figure S193. Get High-res Image Gene #27: 'Amp Peak 27(20q13.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D27V10.png)
P value = 3.27e-05 (Chi-square test), Q value = 0.0084
Table S194. Gene #28: 'Del Peak 1(1p36.13)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
DEL PEAK 1(1P36.13) CNV | 65 | 11 | 7 | 40 | 46 | 7 | 30 | 12 |
DEL PEAK 1(1P36.13) WILD-TYPE | 59 | 25 | 16 | 55 | 26 | 13 | 73 | 28 |
Figure S194. Get High-res Image Gene #28: 'Del Peak 1(1p36.13)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D28V1.png)
P value = 0.000651 (Fisher's exact test), Q value = 0.12
Table S195. Gene #28: 'Del Peak 1(1p36.13)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 125 | 248 |
DEL PEAK 1(1P36.13) CNV | 43 | 50 | 125 |
DEL PEAK 1(1P36.13) WILD-TYPE | 97 | 75 | 123 |
Figure S195. Get High-res Image Gene #28: 'Del Peak 1(1p36.13)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D28V2.png)
P value = 6.02e-32 (Chi-square test), Q value = 3.7e-29
Table S196. Gene #28: 'Del Peak 1(1p36.13)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
DEL PEAK 1(1P36.13) CNV | 58 | 135 | 47 | 120 | 20 |
DEL PEAK 1(1P36.13) WILD-TYPE | 289 | 87 | 25 | 103 | 29 |
Figure S196. Get High-res Image Gene #28: 'Del Peak 1(1p36.13)' versus Molecular Subtype #3: 'CN_CNMF'
![](D28V3.png)
P value = 2.81e-09 (Chi-square test), Q value = 1.1e-06
Table S197. Gene #28: 'Del Peak 1(1p36.13)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
DEL PEAK 1(1P36.13) CNV | 46 | 33 | 50 | 76 | 11 | 25 |
DEL PEAK 1(1P36.13) WILD-TYPE | 55 | 106 | 43 | 61 | 29 | 72 |
Figure S197. Get High-res Image Gene #28: 'Del Peak 1(1p36.13)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D28V4.png)
P value = 1.11e-05 (Fisher's exact test), Q value = 0.003
Table S198. Gene #28: 'Del Peak 1(1p36.13)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
DEL PEAK 1(1P36.13) CNV | 105 | 37 | 207 |
DEL PEAK 1(1P36.13) WILD-TYPE | 129 | 111 | 239 |
Figure S198. Get High-res Image Gene #28: 'Del Peak 1(1p36.13)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D28V7.png)
P value = 6.02e-05 (Fisher's exact test), Q value = 0.015
Table S199. Gene #28: 'Del Peak 1(1p36.13)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
DEL PEAK 1(1P36.13) CNV | 68 | 201 | 80 |
DEL PEAK 1(1P36.13) WILD-TYPE | 148 | 207 | 124 |
Figure S199. Get High-res Image Gene #28: 'Del Peak 1(1p36.13)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D28V8.png)
P value = 2.37e-07 (Fisher's exact test), Q value = 8.1e-05
Table S200. Gene #28: 'Del Peak 1(1p36.13)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
DEL PEAK 1(1P36.13) CNV | 64 | 168 | 131 |
DEL PEAK 1(1P36.13) WILD-TYPE | 170 | 224 | 124 |
Figure S200. Get High-res Image Gene #28: 'Del Peak 1(1p36.13)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D28V9.png)
P value = 0.00056 (Fisher's exact test), Q value = 0.11
Table S201. Gene #28: 'Del Peak 1(1p36.13)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
DEL PEAK 1(1P36.13) CNV | 168 | 91 | 104 |
DEL PEAK 1(1P36.13) WILD-TYPE | 194 | 193 | 131 |
Figure S201. Get High-res Image Gene #28: 'Del Peak 1(1p36.13)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D28V10.png)
P value = 8.39e-05 (Fisher's exact test), Q value = 0.02
Table S202. Gene #29: 'Del Peak 2(1p22.1)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 125 | 248 |
DEL PEAK 2(1P22.1) CNV | 40 | 30 | 110 |
DEL PEAK 2(1P22.1) WILD-TYPE | 100 | 95 | 138 |
Figure S202. Get High-res Image Gene #29: 'Del Peak 2(1p22.1)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D29V2.png)
P value = 5.77e-22 (Chi-square test), Q value = 3.4e-19
Table S203. Gene #29: 'Del Peak 2(1p22.1)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
DEL PEAK 2(1P22.1) CNV | 61 | 117 | 45 | 70 | 12 |
DEL PEAK 2(1P22.1) WILD-TYPE | 286 | 105 | 27 | 153 | 37 |
Figure S203. Get High-res Image Gene #29: 'Del Peak 2(1p22.1)' versus Molecular Subtype #3: 'CN_CNMF'
![](D29V3.png)
P value = 0.00103 (Chi-square test), Q value = 0.19
Table S204. Gene #29: 'Del Peak 2(1p22.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
DEL PEAK 2(1P22.1) CNV | 25 | 35 | 40 | 56 | 13 | 21 |
DEL PEAK 2(1P22.1) WILD-TYPE | 76 | 104 | 53 | 81 | 27 | 76 |
Figure S204. Get High-res Image Gene #29: 'Del Peak 2(1p22.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D29V4.png)
P value = 0.000574 (Fisher's exact test), Q value = 0.11
Table S205. Gene #29: 'Del Peak 2(1p22.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
DEL PEAK 2(1P22.1) CNV | 68 | 38 | 180 |
DEL PEAK 2(1P22.1) WILD-TYPE | 166 | 110 | 266 |
Figure S205. Get High-res Image Gene #29: 'Del Peak 2(1p22.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D29V7.png)
P value = 3.06e-06 (Fisher's exact test), Q value = 0.00089
Table S206. Gene #29: 'Del Peak 2(1p22.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
DEL PEAK 2(1P22.1) CNV | 64 | 174 | 48 |
DEL PEAK 2(1P22.1) WILD-TYPE | 152 | 234 | 156 |
Figure S206. Get High-res Image Gene #29: 'Del Peak 2(1p22.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D29V8.png)
P value = 1.39e-06 (Chi-square test), Q value = 0.00043
Table S207. Gene #30: 'Del Peak 3(2q37.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
DEL PEAK 3(2Q37.3) CNV | 43 | 10 | 5 | 46 | 28 | 6 | 22 | 0 |
DEL PEAK 3(2Q37.3) WILD-TYPE | 81 | 26 | 18 | 49 | 44 | 14 | 81 | 40 |
Figure S207. Get High-res Image Gene #30: 'Del Peak 3(2q37.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D30V1.png)
P value = 3.78e-08 (Fisher's exact test), Q value = 1.4e-05
Table S208. Gene #30: 'Del Peak 3(2q37.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 125 | 248 |
DEL PEAK 3(2Q37.3) CNV | 20 | 58 | 82 |
DEL PEAK 3(2Q37.3) WILD-TYPE | 120 | 67 | 166 |
Figure S208. Get High-res Image Gene #30: 'Del Peak 3(2q37.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D30V2.png)
P value = 1.57e-20 (Chi-square test), Q value = 9e-18
Table S209. Gene #30: 'Del Peak 3(2q37.3)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
DEL PEAK 3(2Q37.3) CNV | 39 | 76 | 26 | 108 | 16 |
DEL PEAK 3(2Q37.3) WILD-TYPE | 308 | 146 | 46 | 115 | 33 |
Figure S209. Get High-res Image Gene #30: 'Del Peak 3(2q37.3)' versus Molecular Subtype #3: 'CN_CNMF'
![](D30V3.png)
P value = 2.61e-10 (Chi-square test), Q value = 1.1e-07
Table S210. Gene #30: 'Del Peak 3(2q37.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
DEL PEAK 3(2Q37.3) CNV | 44 | 19 | 25 | 53 | 4 | 12 |
DEL PEAK 3(2Q37.3) WILD-TYPE | 57 | 120 | 68 | 84 | 36 | 85 |
Figure S210. Get High-res Image Gene #30: 'Del Peak 3(2q37.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D30V4.png)
P value = 1.03e-08 (Fisher's exact test), Q value = 4e-06
Table S211. Gene #30: 'Del Peak 3(2q37.3)' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 147 | 133 | 117 |
DEL PEAK 3(2Q37.3) CNV | 70 | 38 | 16 |
DEL PEAK 3(2Q37.3) WILD-TYPE | 77 | 95 | 101 |
Figure S211. Get High-res Image Gene #30: 'Del Peak 3(2q37.3)' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D30V5.png)
P value = 1.11e-07 (Fisher's exact test), Q value = 3.9e-05
Table S212. Gene #30: 'Del Peak 3(2q37.3)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 161 | 110 | 126 |
DEL PEAK 3(2Q37.3) CNV | 56 | 13 | 55 |
DEL PEAK 3(2Q37.3) WILD-TYPE | 105 | 97 | 71 |
Figure S212. Get High-res Image Gene #30: 'Del Peak 3(2q37.3)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D30V6.png)
P value = 1.81e-11 (Fisher's exact test), Q value = 8e-09
Table S213. Gene #30: 'Del Peak 3(2q37.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
DEL PEAK 3(2Q37.3) CNV | 103 | 17 | 126 |
DEL PEAK 3(2Q37.3) WILD-TYPE | 131 | 131 | 320 |
Figure S213. Get High-res Image Gene #30: 'Del Peak 3(2q37.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D30V7.png)
P value = 2.03e-08 (Fisher's exact test), Q value = 7.6e-06
Table S214. Gene #30: 'Del Peak 3(2q37.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
DEL PEAK 3(2Q37.3) CNV | 35 | 125 | 86 |
DEL PEAK 3(2Q37.3) WILD-TYPE | 181 | 283 | 118 |
Figure S214. Get High-res Image Gene #30: 'Del Peak 3(2q37.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D30V8.png)
P value = 4.66e-11 (Fisher's exact test), Q value = 2e-08
Table S215. Gene #30: 'Del Peak 3(2q37.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
DEL PEAK 3(2Q37.3) CNV | 43 | 99 | 116 |
DEL PEAK 3(2Q37.3) WILD-TYPE | 191 | 293 | 139 |
Figure S215. Get High-res Image Gene #30: 'Del Peak 3(2q37.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D30V9.png)
P value = 2.63e-07 (Fisher's exact test), Q value = 8.9e-05
Table S216. Gene #30: 'Del Peak 3(2q37.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
DEL PEAK 3(2Q37.3) CNV | 110 | 53 | 95 |
DEL PEAK 3(2Q37.3) WILD-TYPE | 252 | 231 | 140 |
Figure S216. Get High-res Image Gene #30: 'Del Peak 3(2q37.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D30V10.png)
P value = 1.06e-10 (Chi-square test), Q value = 4.5e-08
Table S217. Gene #31: 'Del Peak 4(3p14.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
DEL PEAK 4(3P14.3) CNV | 39 | 11 | 4 | 50 | 34 | 9 | 8 | 8 |
DEL PEAK 4(3P14.3) WILD-TYPE | 85 | 25 | 19 | 45 | 38 | 11 | 95 | 32 |
Figure S217. Get High-res Image Gene #31: 'Del Peak 4(3p14.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D31V1.png)
P value = 3.11e-08 (Fisher's exact test), Q value = 1.1e-05
Table S218. Gene #31: 'Del Peak 4(3p14.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 125 | 248 |
DEL PEAK 4(3P14.3) CNV | 36 | 67 | 60 |
DEL PEAK 4(3P14.3) WILD-TYPE | 104 | 58 | 188 |
Figure S218. Get High-res Image Gene #31: 'Del Peak 4(3p14.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D31V2.png)
P value = 2.93e-33 (Chi-square test), Q value = 1.8e-30
Table S219. Gene #31: 'Del Peak 4(3p14.3)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
DEL PEAK 4(3P14.3) CNV | 44 | 80 | 12 | 134 | 8 |
DEL PEAK 4(3P14.3) WILD-TYPE | 303 | 142 | 60 | 89 | 41 |
Figure S219. Get High-res Image Gene #31: 'Del Peak 4(3p14.3)' versus Molecular Subtype #3: 'CN_CNMF'
![](D31V3.png)
P value = 5.78e-13 (Chi-square test), Q value = 2.7e-10
Table S220. Gene #31: 'Del Peak 4(3p14.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
DEL PEAK 4(3P14.3) CNV | 49 | 9 | 35 | 51 | 12 | 18 |
DEL PEAK 4(3P14.3) WILD-TYPE | 52 | 130 | 58 | 86 | 28 | 79 |
Figure S220. Get High-res Image Gene #31: 'Del Peak 4(3p14.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D31V4.png)
P value = 1.18e-09 (Fisher's exact test), Q value = 4.8e-07
Table S221. Gene #31: 'Del Peak 4(3p14.3)' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 147 | 133 | 117 |
DEL PEAK 4(3P14.3) CNV | 79 | 25 | 32 |
DEL PEAK 4(3P14.3) WILD-TYPE | 68 | 108 | 85 |
Figure S221. Get High-res Image Gene #31: 'Del Peak 4(3p14.3)' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D31V5.png)
P value = 5.21e-06 (Fisher's exact test), Q value = 0.0015
Table S222. Gene #31: 'Del Peak 4(3p14.3)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 161 | 110 | 126 |
DEL PEAK 4(3P14.3) CNV | 40 | 31 | 65 |
DEL PEAK 4(3P14.3) WILD-TYPE | 121 | 79 | 61 |
Figure S222. Get High-res Image Gene #31: 'Del Peak 4(3p14.3)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D31V6.png)
P value = 4.61e-18 (Fisher's exact test), Q value = 2.6e-15
Table S223. Gene #31: 'Del Peak 4(3p14.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
DEL PEAK 4(3P14.3) CNV | 127 | 28 | 102 |
DEL PEAK 4(3P14.3) WILD-TYPE | 107 | 120 | 344 |
Figure S223. Get High-res Image Gene #31: 'Del Peak 4(3p14.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D31V7.png)
P value = 4.42e-13 (Fisher's exact test), Q value = 2.1e-10
Table S224. Gene #31: 'Del Peak 4(3p14.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
DEL PEAK 4(3P14.3) CNV | 45 | 105 | 107 |
DEL PEAK 4(3P14.3) WILD-TYPE | 171 | 303 | 97 |
Figure S224. Get High-res Image Gene #31: 'Del Peak 4(3p14.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D31V8.png)
P value = 2.29e-19 (Fisher's exact test), Q value = 1.3e-16
Table S225. Gene #31: 'Del Peak 4(3p14.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
DEL PEAK 4(3P14.3) CNV | 45 | 87 | 136 |
DEL PEAK 4(3P14.3) WILD-TYPE | 189 | 305 | 119 |
Figure S225. Get High-res Image Gene #31: 'Del Peak 4(3p14.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D31V9.png)
P value = 2.57e-14 (Fisher's exact test), Q value = 1.3e-11
Table S226. Gene #31: 'Del Peak 4(3p14.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
DEL PEAK 4(3P14.3) CNV | 100 | 51 | 117 |
DEL PEAK 4(3P14.3) WILD-TYPE | 262 | 233 | 118 |
Figure S226. Get High-res Image Gene #31: 'Del Peak 4(3p14.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D31V10.png)
P value = 5.63e-11 (Chi-square test), Q value = 2.4e-08
Table S227. Gene #32: 'Del Peak 5(4p16.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
DEL PEAK 5(4P16.3) CNV | 28 | 10 | 4 | 55 | 37 | 7 | 21 | 5 |
DEL PEAK 5(4P16.3) WILD-TYPE | 96 | 26 | 19 | 40 | 35 | 13 | 82 | 35 |
Figure S227. Get High-res Image Gene #32: 'Del Peak 5(4p16.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D32V1.png)
P value = 6.3e-12 (Fisher's exact test), Q value = 2.8e-09
Table S228. Gene #32: 'Del Peak 5(4p16.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 125 | 248 |
DEL PEAK 5(4P16.3) CNV | 24 | 72 | 71 |
DEL PEAK 5(4P16.3) WILD-TYPE | 116 | 53 | 177 |
Figure S228. Get High-res Image Gene #32: 'Del Peak 5(4p16.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D32V2.png)
P value = 1.98e-26 (Chi-square test), Q value = 1.2e-23
Table S229. Gene #32: 'Del Peak 5(4p16.3)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
DEL PEAK 5(4P16.3) CNV | 55 | 52 | 31 | 130 | 13 |
DEL PEAK 5(4P16.3) WILD-TYPE | 292 | 170 | 41 | 93 | 36 |
Figure S229. Get High-res Image Gene #32: 'Del Peak 5(4p16.3)' versus Molecular Subtype #3: 'CN_CNMF'
![](D32V3.png)
P value = 8.41e-13 (Chi-square test), Q value = 3.9e-10
Table S230. Gene #32: 'Del Peak 5(4p16.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
DEL PEAK 5(4P16.3) CNV | 62 | 30 | 27 | 28 | 5 | 25 |
DEL PEAK 5(4P16.3) WILD-TYPE | 39 | 109 | 66 | 109 | 35 | 72 |
Figure S230. Get High-res Image Gene #32: 'Del Peak 5(4p16.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D32V4.png)
P value = 4.6e-07 (Fisher's exact test), Q value = 0.00015
Table S231. Gene #32: 'Del Peak 5(4p16.3)' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 147 | 133 | 117 |
DEL PEAK 5(4P16.3) CNV | 75 | 39 | 24 |
DEL PEAK 5(4P16.3) WILD-TYPE | 72 | 94 | 93 |
Figure S231. Get High-res Image Gene #32: 'Del Peak 5(4p16.3)' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D32V5.png)
P value = 1.62e-06 (Fisher's exact test), Q value = 5e-04
Table S232. Gene #32: 'Del Peak 5(4p16.3)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 161 | 110 | 126 |
DEL PEAK 5(4P16.3) CNV | 48 | 24 | 66 |
DEL PEAK 5(4P16.3) WILD-TYPE | 113 | 86 | 60 |
Figure S232. Get High-res Image Gene #32: 'Del Peak 5(4p16.3)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D32V6.png)
P value = 9.75e-24 (Fisher's exact test), Q value = 5.8e-21
Table S233. Gene #32: 'Del Peak 5(4p16.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
DEL PEAK 5(4P16.3) CNV | 134 | 20 | 104 |
DEL PEAK 5(4P16.3) WILD-TYPE | 100 | 128 | 342 |
Figure S233. Get High-res Image Gene #32: 'Del Peak 5(4p16.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D32V7.png)
P value = 2.14e-18 (Fisher's exact test), Q value = 1.2e-15
Table S234. Gene #32: 'Del Peak 5(4p16.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
DEL PEAK 5(4P16.3) CNV | 38 | 105 | 115 |
DEL PEAK 5(4P16.3) WILD-TYPE | 178 | 303 | 89 |
Figure S234. Get High-res Image Gene #32: 'Del Peak 5(4p16.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D32V8.png)
P value = 9.97e-15 (Fisher's exact test), Q value = 5.1e-12
Table S235. Gene #32: 'Del Peak 5(4p16.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
DEL PEAK 5(4P16.3) CNV | 48 | 94 | 129 |
DEL PEAK 5(4P16.3) WILD-TYPE | 186 | 298 | 126 |
Figure S235. Get High-res Image Gene #32: 'Del Peak 5(4p16.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D32V9.png)
P value = 4.7e-18 (Fisher's exact test), Q value = 2.6e-15
Table S236. Gene #32: 'Del Peak 5(4p16.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
DEL PEAK 5(4P16.3) CNV | 93 | 52 | 126 |
DEL PEAK 5(4P16.3) WILD-TYPE | 269 | 232 | 109 |
Figure S236. Get High-res Image Gene #32: 'Del Peak 5(4p16.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D32V10.png)
P value = 3.17e-06 (Chi-square test), Q value = 0.00092
Table S237. Gene #33: 'Del Peak 6(4q35.2)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
DEL PEAK 6(4Q35.2) CNV | 27 | 10 | 7 | 50 | 30 | 10 | 23 | 8 |
DEL PEAK 6(4Q35.2) WILD-TYPE | 97 | 26 | 16 | 45 | 42 | 10 | 80 | 32 |
Figure S237. Get High-res Image Gene #33: 'Del Peak 6(4q35.2)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D33V1.png)
P value = 9.81e-07 (Fisher's exact test), Q value = 0.00031
Table S238. Gene #33: 'Del Peak 6(4q35.2)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 125 | 248 |
DEL PEAK 6(4Q35.2) CNV | 29 | 63 | 73 |
DEL PEAK 6(4Q35.2) WILD-TYPE | 111 | 62 | 175 |
Figure S238. Get High-res Image Gene #33: 'Del Peak 6(4q35.2)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D33V2.png)
P value = 2.71e-37 (Chi-square test), Q value = 1.7e-34
Table S239. Gene #33: 'Del Peak 6(4q35.2)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
DEL PEAK 6(4Q35.2) CNV | 53 | 42 | 36 | 141 | 11 |
DEL PEAK 6(4Q35.2) WILD-TYPE | 294 | 180 | 36 | 82 | 38 |
Figure S239. Get High-res Image Gene #33: 'Del Peak 6(4q35.2)' versus Molecular Subtype #3: 'CN_CNMF'
![](D33V3.png)
P value = 1.66e-13 (Chi-square test), Q value = 8e-11
Table S240. Gene #33: 'Del Peak 6(4q35.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
DEL PEAK 6(4Q35.2) CNV | 63 | 29 | 23 | 26 | 7 | 29 |
DEL PEAK 6(4Q35.2) WILD-TYPE | 38 | 110 | 70 | 111 | 33 | 68 |
Figure S240. Get High-res Image Gene #33: 'Del Peak 6(4q35.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D33V4.png)
P value = 1.51e-08 (Fisher's exact test), Q value = 5.7e-06
Table S241. Gene #33: 'Del Peak 6(4q35.2)' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 147 | 133 | 117 |
DEL PEAK 6(4Q35.2) CNV | 78 | 35 | 24 |
DEL PEAK 6(4Q35.2) WILD-TYPE | 69 | 98 | 93 |
Figure S241. Get High-res Image Gene #33: 'Del Peak 6(4q35.2)' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D33V5.png)
P value = 1.78e-06 (Fisher's exact test), Q value = 0.00054
Table S242. Gene #33: 'Del Peak 6(4q35.2)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 161 | 110 | 126 |
DEL PEAK 6(4Q35.2) CNV | 46 | 25 | 66 |
DEL PEAK 6(4Q35.2) WILD-TYPE | 115 | 85 | 60 |
Figure S242. Get High-res Image Gene #33: 'Del Peak 6(4q35.2)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D33V6.png)
P value = 2.22e-21 (Fisher's exact test), Q value = 1.3e-18
Table S243. Gene #33: 'Del Peak 6(4q35.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
DEL PEAK 6(4Q35.2) CNV | 131 | 21 | 107 |
DEL PEAK 6(4Q35.2) WILD-TYPE | 103 | 127 | 339 |
Figure S243. Get High-res Image Gene #33: 'Del Peak 6(4q35.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D33V7.png)
P value = 3.79e-14 (Fisher's exact test), Q value = 1.9e-11
Table S244. Gene #33: 'Del Peak 6(4q35.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
DEL PEAK 6(4Q35.2) CNV | 43 | 107 | 109 |
DEL PEAK 6(4Q35.2) WILD-TYPE | 173 | 301 | 95 |
Figure S244. Get High-res Image Gene #33: 'Del Peak 6(4q35.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D33V8.png)
P value = 2.84e-13 (Fisher's exact test), Q value = 1.4e-10
Table S245. Gene #33: 'Del Peak 6(4q35.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
DEL PEAK 6(4Q35.2) CNV | 48 | 97 | 126 |
DEL PEAK 6(4Q35.2) WILD-TYPE | 186 | 295 | 129 |
Figure S245. Get High-res Image Gene #33: 'Del Peak 6(4q35.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D33V9.png)
P value = 6.73e-18 (Fisher's exact test), Q value = 3.7e-15
Table S246. Gene #33: 'Del Peak 6(4q35.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
DEL PEAK 6(4Q35.2) CNV | 87 | 57 | 127 |
DEL PEAK 6(4Q35.2) WILD-TYPE | 275 | 227 | 108 |
Figure S246. Get High-res Image Gene #33: 'Del Peak 6(4q35.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D33V10.png)
P value = 1.17e-27 (Chi-square test), Q value = 7e-25
Table S247. Gene #34: 'Del Peak 7(5q11.2)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
DEL PEAK 7(5Q11.2) CNV | 19 | 5 | 2 | 68 | 25 | 3 | 8 | 4 |
DEL PEAK 7(5Q11.2) WILD-TYPE | 105 | 31 | 21 | 27 | 47 | 17 | 95 | 36 |
Figure S247. Get High-res Image Gene #34: 'Del Peak 7(5q11.2)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D34V1.png)
P value = 6.11e-25 (Fisher's exact test), Q value = 3.6e-22
Table S248. Gene #34: 'Del Peak 7(5q11.2)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 125 | 248 |
DEL PEAK 7(5Q11.2) CNV | 14 | 79 | 41 |
DEL PEAK 7(5Q11.2) WILD-TYPE | 126 | 46 | 207 |
Figure S248. Get High-res Image Gene #34: 'Del Peak 7(5q11.2)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D34V2.png)
P value = 5.91e-60 (Chi-square test), Q value = 3.8e-57
Table S249. Gene #34: 'Del Peak 7(5q11.2)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
DEL PEAK 7(5Q11.2) CNV | 35 | 29 | 8 | 152 | 10 |
DEL PEAK 7(5Q11.2) WILD-TYPE | 312 | 193 | 64 | 71 | 39 |
Figure S249. Get High-res Image Gene #34: 'Del Peak 7(5q11.2)' versus Molecular Subtype #3: 'CN_CNMF'
![](D34V3.png)
P value = 1.43e-39 (Chi-square test), Q value = 8.9e-37
Table S250. Gene #34: 'Del Peak 7(5q11.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
DEL PEAK 7(5Q11.2) CNV | 78 | 4 | 15 | 28 | 5 | 22 |
DEL PEAK 7(5Q11.2) WILD-TYPE | 23 | 135 | 78 | 109 | 35 | 75 |
Figure S250. Get High-res Image Gene #34: 'Del Peak 7(5q11.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D34V4.png)
P value = 3.33e-16 (Fisher's exact test), Q value = 1.8e-13
Table S251. Gene #34: 'Del Peak 7(5q11.2)' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 147 | 133 | 117 |
DEL PEAK 7(5Q11.2) CNV | 78 | 13 | 23 |
DEL PEAK 7(5Q11.2) WILD-TYPE | 69 | 120 | 94 |
Figure S251. Get High-res Image Gene #34: 'Del Peak 7(5q11.2)' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D34V5.png)
P value = 7.43e-19 (Fisher's exact test), Q value = 4.2e-16
Table S252. Gene #34: 'Del Peak 7(5q11.2)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 161 | 110 | 126 |
DEL PEAK 7(5Q11.2) CNV | 26 | 13 | 75 |
DEL PEAK 7(5Q11.2) WILD-TYPE | 135 | 97 | 51 |
Figure S252. Get High-res Image Gene #34: 'Del Peak 7(5q11.2)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D34V6.png)
P value = 1.33e-40 (Fisher's exact test), Q value = 8.3e-38
Table S253. Gene #34: 'Del Peak 7(5q11.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
DEL PEAK 7(5Q11.2) CNV | 140 | 11 | 67 |
DEL PEAK 7(5Q11.2) WILD-TYPE | 94 | 137 | 379 |
Figure S253. Get High-res Image Gene #34: 'Del Peak 7(5q11.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D34V7.png)
P value = 1.7e-43 (Fisher's exact test), Q value = 1.1e-40
Table S254. Gene #34: 'Del Peak 7(5q11.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
DEL PEAK 7(5Q11.2) CNV | 19 | 67 | 132 |
DEL PEAK 7(5Q11.2) WILD-TYPE | 197 | 341 | 72 |
Figure S254. Get High-res Image Gene #34: 'Del Peak 7(5q11.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D34V8.png)
P value = 8.36e-40 (Fisher's exact test), Q value = 5.2e-37
Table S255. Gene #34: 'Del Peak 7(5q11.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
DEL PEAK 7(5Q11.2) CNV | 32 | 45 | 145 |
DEL PEAK 7(5Q11.2) WILD-TYPE | 202 | 347 | 110 |
Figure S255. Get High-res Image Gene #34: 'Del Peak 7(5q11.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D34V9.png)
P value = 5.41e-49 (Fisher's exact test), Q value = 3.4e-46
Table S256. Gene #34: 'Del Peak 7(5q11.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
DEL PEAK 7(5Q11.2) CNV | 63 | 16 | 143 |
DEL PEAK 7(5Q11.2) WILD-TYPE | 299 | 268 | 92 |
Figure S256. Get High-res Image Gene #34: 'Del Peak 7(5q11.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D34V10.png)
P value = 1.36e-29 (Chi-square test), Q value = 8.3e-27
Table S257. Gene #35: 'Del Peak 8(5q21.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
DEL PEAK 8(5Q21.3) CNV | 19 | 5 | 2 | 69 | 24 | 5 | 7 | 2 |
DEL PEAK 8(5Q21.3) WILD-TYPE | 105 | 31 | 21 | 26 | 48 | 15 | 96 | 38 |
Figure S257. Get High-res Image Gene #35: 'Del Peak 8(5q21.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D35V1.png)
P value = 1e-26 (Fisher's exact test), Q value = 6e-24
Table S258. Gene #35: 'Del Peak 8(5q21.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 125 | 248 |
DEL PEAK 8(5Q21.3) CNV | 12 | 80 | 41 |
DEL PEAK 8(5Q21.3) WILD-TYPE | 128 | 45 | 207 |
Figure S258. Get High-res Image Gene #35: 'Del Peak 8(5q21.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D35V2.png)
P value = 6.13e-70 (Chi-square test), Q value = 3.9e-67
Table S259. Gene #35: 'Del Peak 8(5q21.3)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
DEL PEAK 8(5Q21.3) CNV | 28 | 25 | 7 | 156 | 9 |
DEL PEAK 8(5Q21.3) WILD-TYPE | 319 | 197 | 65 | 67 | 40 |
Figure S259. Get High-res Image Gene #35: 'Del Peak 8(5q21.3)' versus Molecular Subtype #3: 'CN_CNMF'
![](D35V3.png)
P value = 3.25e-51 (Chi-square test), Q value = 2.1e-48
Table S260. Gene #35: 'Del Peak 8(5q21.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
DEL PEAK 8(5Q21.3) CNV | 84 | 4 | 10 | 23 | 3 | 22 |
DEL PEAK 8(5Q21.3) WILD-TYPE | 17 | 135 | 83 | 114 | 37 | 75 |
Figure S260. Get High-res Image Gene #35: 'Del Peak 8(5q21.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D35V4.png)
P value = 2.6e-15 (Fisher's exact test), Q value = 1.3e-12
Table S261. Gene #35: 'Del Peak 8(5q21.3)' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 147 | 133 | 117 |
DEL PEAK 8(5Q21.3) CNV | 76 | 13 | 23 |
DEL PEAK 8(5Q21.3) WILD-TYPE | 71 | 120 | 94 |
Figure S261. Get High-res Image Gene #35: 'Del Peak 8(5q21.3)' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D35V5.png)
P value = 8.97e-16 (Fisher's exact test), Q value = 4.7e-13
Table S262. Gene #35: 'Del Peak 8(5q21.3)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 161 | 110 | 126 |
DEL PEAK 8(5Q21.3) CNV | 26 | 15 | 71 |
DEL PEAK 8(5Q21.3) WILD-TYPE | 135 | 95 | 55 |
Figure S262. Get High-res Image Gene #35: 'Del Peak 8(5q21.3)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D35V6.png)
P value = 5.88e-48 (Fisher's exact test), Q value = 3.7e-45
Table S263. Gene #35: 'Del Peak 8(5q21.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
DEL PEAK 8(5Q21.3) CNV | 143 | 8 | 57 |
DEL PEAK 8(5Q21.3) WILD-TYPE | 91 | 140 | 389 |
Figure S263. Get High-res Image Gene #35: 'Del Peak 8(5q21.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D35V7.png)
P value = 1.06e-47 (Fisher's exact test), Q value = 6.7e-45
Table S264. Gene #35: 'Del Peak 8(5q21.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
DEL PEAK 8(5Q21.3) CNV | 18 | 57 | 133 |
DEL PEAK 8(5Q21.3) WILD-TYPE | 198 | 351 | 71 |
Figure S264. Get High-res Image Gene #35: 'Del Peak 8(5q21.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D35V8.png)
P value = 1.28e-39 (Fisher's exact test), Q value = 8e-37
Table S265. Gene #35: 'Del Peak 8(5q21.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
DEL PEAK 8(5Q21.3) CNV | 31 | 42 | 142 |
DEL PEAK 8(5Q21.3) WILD-TYPE | 203 | 350 | 113 |
Figure S265. Get High-res Image Gene #35: 'Del Peak 8(5q21.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D35V9.png)
P value = 1.67e-54 (Fisher's exact test), Q value = 1.1e-51
Table S266. Gene #35: 'Del Peak 8(5q21.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
DEL PEAK 8(5Q21.3) CNV | 55 | 14 | 146 |
DEL PEAK 8(5Q21.3) WILD-TYPE | 307 | 270 | 89 |
Figure S266. Get High-res Image Gene #35: 'Del Peak 8(5q21.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D35V10.png)
P value = 8.51e-07 (Chi-square test), Q value = 0.00027
Table S267. Gene #36: 'Del Peak 9(6p25.3)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
DEL PEAK 9(6P25.3) CNV | 35 | 63 | 12 | 47 | 13 |
DEL PEAK 9(6P25.3) WILD-TYPE | 312 | 159 | 60 | 176 | 36 |
Figure S267. Get High-res Image Gene #36: 'Del Peak 9(6p25.3)' versus Molecular Subtype #3: 'CN_CNMF'
![](D36V3.png)
P value = 4.71e-05 (Chi-square test), Q value = 0.012
Table S268. Gene #36: 'Del Peak 9(6p25.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
DEL PEAK 9(6P25.3) CNV | 24 | 13 | 19 | 41 | 2 | 14 |
DEL PEAK 9(6P25.3) WILD-TYPE | 77 | 126 | 74 | 96 | 38 | 83 |
Figure S268. Get High-res Image Gene #36: 'Del Peak 9(6p25.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D36V4.png)
P value = 1.55e-06 (Chi-square test), Q value = 0.00048
Table S269. Gene #37: 'Del Peak 10(6q15)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
DEL PEAK 10(6Q15) CNV | 64 | 13 | 7 | 17 | 29 | 4 | 22 | 16 |
DEL PEAK 10(6Q15) WILD-TYPE | 60 | 23 | 16 | 78 | 43 | 16 | 81 | 24 |
Figure S269. Get High-res Image Gene #37: 'Del Peak 10(6q15)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D37V1.png)
P value = 0.00137 (Fisher's exact test), Q value = 0.25
Table S270. Gene #37: 'Del Peak 10(6q15)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 125 | 248 |
DEL PEAK 10(6Q15) CNV | 49 | 26 | 97 |
DEL PEAK 10(6Q15) WILD-TYPE | 91 | 99 | 151 |
Figure S270. Get High-res Image Gene #37: 'Del Peak 10(6q15)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D37V2.png)
P value = 6.83e-28 (Chi-square test), Q value = 4.1e-25
Table S271. Gene #37: 'Del Peak 10(6q15)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
DEL PEAK 10(6Q15) CNV | 73 | 133 | 19 | 45 | 31 |
DEL PEAK 10(6Q15) WILD-TYPE | 274 | 89 | 53 | 178 | 18 |
Figure S271. Get High-res Image Gene #37: 'Del Peak 10(6q15)' versus Molecular Subtype #3: 'CN_CNMF'
![](D37V3.png)
P value = 3.78e-08 (Chi-square test), Q value = 1.4e-05
Table S272. Gene #37: 'Del Peak 10(6q15)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
DEL PEAK 10(6Q15) CNV | 19 | 43 | 34 | 70 | 7 | 19 |
DEL PEAK 10(6Q15) WILD-TYPE | 82 | 96 | 59 | 67 | 33 | 78 |
Figure S272. Get High-res Image Gene #37: 'Del Peak 10(6q15)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D37V4.png)
P value = 2.69e-05 (Fisher's exact test), Q value = 0.0069
Table S273. Gene #37: 'Del Peak 10(6q15)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
DEL PEAK 10(6Q15) CNV | 56 | 43 | 181 |
DEL PEAK 10(6Q15) WILD-TYPE | 178 | 105 | 265 |
Figure S273. Get High-res Image Gene #37: 'Del Peak 10(6q15)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D37V7.png)
P value = 0.000262 (Fisher's exact test), Q value = 0.055
Table S274. Gene #37: 'Del Peak 10(6q15)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
DEL PEAK 10(6Q15) CNV | 66 | 164 | 50 |
DEL PEAK 10(6Q15) WILD-TYPE | 150 | 244 | 154 |
Figure S274. Get High-res Image Gene #37: 'Del Peak 10(6q15)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D37V8.png)
P value = 5.04e-05 (Fisher's exact test), Q value = 0.012
Table S275. Gene #37: 'Del Peak 10(6q15)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
DEL PEAK 10(6Q15) CNV | 150 | 86 | 58 |
DEL PEAK 10(6Q15) WILD-TYPE | 212 | 198 | 177 |
Figure S275. Get High-res Image Gene #37: 'Del Peak 10(6q15)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D37V10.png)
P value = 2.87e-14 (Chi-square test), Q value = 1.4e-11
Table S276. Gene #38: 'Del Peak 11(6q27)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
DEL PEAK 11(6Q27) CNV | 76 | 112 | 19 | 76 | 31 |
DEL PEAK 11(6Q27) WILD-TYPE | 271 | 110 | 53 | 147 | 18 |
Figure S276. Get High-res Image Gene #38: 'Del Peak 11(6q27)' versus Molecular Subtype #3: 'CN_CNMF'
![](D38V3.png)
P value = 0.000366 (Fisher's exact test), Q value = 0.074
Table S277. Gene #39: 'Del Peak 12(7p22.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 125 | 248 |
DEL PEAK 12(7P22.3) CNV | 8 | 27 | 40 |
DEL PEAK 12(7P22.3) WILD-TYPE | 132 | 98 | 208 |
Figure S277. Get High-res Image Gene #39: 'Del Peak 12(7p22.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D39V2.png)
P value = 2.06e-15 (Chi-square test), Q value = 1.1e-12
Table S278. Gene #39: 'Del Peak 12(7p22.3)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
DEL PEAK 12(7P22.3) CNV | 11 | 47 | 3 | 54 | 3 |
DEL PEAK 12(7P22.3) WILD-TYPE | 336 | 175 | 69 | 169 | 46 |
Figure S278. Get High-res Image Gene #39: 'Del Peak 12(7p22.3)' versus Molecular Subtype #3: 'CN_CNMF'
![](D39V3.png)
P value = 5.89e-07 (Chi-square test), Q value = 0.00019
Table S279. Gene #39: 'Del Peak 12(7p22.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
DEL PEAK 12(7P22.3) CNV | 25 | 6 | 12 | 18 | 2 | 2 |
DEL PEAK 12(7P22.3) WILD-TYPE | 76 | 133 | 81 | 119 | 38 | 95 |
Figure S279. Get High-res Image Gene #39: 'Del Peak 12(7p22.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D39V4.png)
P value = 8.07e-09 (Fisher's exact test), Q value = 3.1e-06
Table S280. Gene #39: 'Del Peak 12(7p22.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
DEL PEAK 12(7P22.3) CNV | 55 | 4 | 56 |
DEL PEAK 12(7P22.3) WILD-TYPE | 179 | 144 | 390 |
Figure S280. Get High-res Image Gene #39: 'Del Peak 12(7p22.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D39V7.png)
P value = 5.39e-08 (Fisher's exact test), Q value = 1.9e-05
Table S281. Gene #39: 'Del Peak 12(7p22.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
DEL PEAK 12(7P22.3) CNV | 9 | 60 | 46 |
DEL PEAK 12(7P22.3) WILD-TYPE | 207 | 348 | 158 |
Figure S281. Get High-res Image Gene #39: 'Del Peak 12(7p22.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D39V8.png)
P value = 3.96e-11 (Fisher's exact test), Q value = 1.7e-08
Table S282. Gene #39: 'Del Peak 12(7p22.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
DEL PEAK 12(7P22.3) CNV | 7 | 48 | 59 |
DEL PEAK 12(7P22.3) WILD-TYPE | 227 | 344 | 196 |
Figure S282. Get High-res Image Gene #39: 'Del Peak 12(7p22.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D39V9.png)
P value = 1.38e-10 (Fisher's exact test), Q value = 5.9e-08
Table S283. Gene #39: 'Del Peak 12(7p22.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
DEL PEAK 12(7P22.3) CNV | 46 | 12 | 56 |
DEL PEAK 12(7P22.3) WILD-TYPE | 316 | 272 | 179 |
Figure S283. Get High-res Image Gene #39: 'Del Peak 12(7p22.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D39V10.png)
P value = 5.25e-10 (Chi-square test), Q value = 2.2e-07
Table S284. Gene #40: 'Del Peak 13(7q36.1)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
DEL PEAK 13(7Q36.1) CNV | 32 | 61 | 13 | 64 | 4 |
DEL PEAK 13(7Q36.1) WILD-TYPE | 315 | 161 | 59 | 159 | 45 |
Figure S284. Get High-res Image Gene #40: 'Del Peak 13(7q36.1)' versus Molecular Subtype #3: 'CN_CNMF'
![](D40V3.png)
P value = 0.000414 (Fisher's exact test), Q value = 0.083
Table S285. Gene #40: 'Del Peak 13(7q36.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
DEL PEAK 13(7Q36.1) CNV | 65 | 17 | 87 |
DEL PEAK 13(7Q36.1) WILD-TYPE | 169 | 131 | 359 |
Figure S285. Get High-res Image Gene #40: 'Del Peak 13(7q36.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D40V7.png)
P value = 0.000496 (Fisher's exact test), Q value = 0.098
Table S286. Gene #40: 'Del Peak 13(7q36.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
DEL PEAK 13(7Q36.1) CNV | 25 | 95 | 49 |
DEL PEAK 13(7Q36.1) WILD-TYPE | 191 | 313 | 155 |
Figure S286. Get High-res Image Gene #40: 'Del Peak 13(7q36.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D40V8.png)
P value = 5.26e-08 (Fisher's exact test), Q value = 1.9e-05
Table S287. Gene #40: 'Del Peak 13(7q36.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
DEL PEAK 13(7Q36.1) CNV | 23 | 69 | 77 |
DEL PEAK 13(7Q36.1) WILD-TYPE | 211 | 323 | 178 |
Figure S287. Get High-res Image Gene #40: 'Del Peak 13(7q36.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D40V9.png)
P value = 1.6e-06 (Fisher's exact test), Q value = 0.00049
Table S288. Gene #40: 'Del Peak 13(7q36.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
DEL PEAK 13(7Q36.1) CNV | 73 | 30 | 66 |
DEL PEAK 13(7Q36.1) WILD-TYPE | 289 | 254 | 169 |
Figure S288. Get High-res Image Gene #40: 'Del Peak 13(7q36.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D40V10.png)
P value = 1.08e-09 (Chi-square test), Q value = 4.4e-07
Table S289. Gene #41: 'Del Peak 14(8p23.2)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
DEL PEAK 14(8P23.2) CNV | 81 | 16 | 13 | 64 | 47 | 13 | 26 | 17 |
DEL PEAK 14(8P23.2) WILD-TYPE | 43 | 20 | 10 | 31 | 25 | 7 | 77 | 23 |
Figure S289. Get High-res Image Gene #41: 'Del Peak 14(8p23.2)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D41V1.png)
P value = 2.53e-05 (Fisher's exact test), Q value = 0.0066
Table S290. Gene #41: 'Del Peak 14(8p23.2)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 125 | 248 |
DEL PEAK 14(8P23.2) CNV | 57 | 86 | 134 |
DEL PEAK 14(8P23.2) WILD-TYPE | 83 | 39 | 114 |
Figure S290. Get High-res Image Gene #41: 'Del Peak 14(8p23.2)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D41V2.png)
P value = 7.63e-31 (Chi-square test), Q value = 4.7e-28
Table S291. Gene #41: 'Del Peak 14(8p23.2)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
DEL PEAK 14(8P23.2) CNV | 117 | 148 | 15 | 161 | 40 |
DEL PEAK 14(8P23.2) WILD-TYPE | 230 | 74 | 57 | 62 | 9 |
Figure S291. Get High-res Image Gene #41: 'Del Peak 14(8p23.2)' versus Molecular Subtype #3: 'CN_CNMF'
![](D41V3.png)
P value = 1.19e-13 (Chi-square test), Q value = 5.8e-11
Table S292. Gene #41: 'Del Peak 14(8p23.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
DEL PEAK 14(8P23.2) CNV | 68 | 35 | 48 | 95 | 18 | 41 |
DEL PEAK 14(8P23.2) WILD-TYPE | 33 | 104 | 45 | 42 | 22 | 56 |
Figure S292. Get High-res Image Gene #41: 'Del Peak 14(8p23.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D41V4.png)
P value = 2.05e-11 (Fisher's exact test), Q value = 9e-09
Table S293. Gene #41: 'Del Peak 14(8p23.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
DEL PEAK 14(8P23.2) CNV | 162 | 49 | 232 |
DEL PEAK 14(8P23.2) WILD-TYPE | 72 | 99 | 214 |
Figure S293. Get High-res Image Gene #41: 'Del Peak 14(8p23.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D41V7.png)
P value = 3.71e-08 (Fisher's exact test), Q value = 1.4e-05
Table S294. Gene #41: 'Del Peak 14(8p23.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
DEL PEAK 14(8P23.2) CNV | 84 | 222 | 137 |
DEL PEAK 14(8P23.2) WILD-TYPE | 132 | 186 | 67 |
Figure S294. Get High-res Image Gene #41: 'Del Peak 14(8p23.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D41V8.png)
P value = 5.68e-06 (Fisher's exact test), Q value = 0.0016
Table S295. Gene #41: 'Del Peak 14(8p23.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
DEL PEAK 14(8P23.2) CNV | 98 | 203 | 163 |
DEL PEAK 14(8P23.2) WILD-TYPE | 136 | 189 | 92 |
Figure S295. Get High-res Image Gene #41: 'Del Peak 14(8p23.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D41V9.png)
P value = 4.79e-12 (Fisher's exact test), Q value = 2.2e-09
Table S296. Gene #41: 'Del Peak 14(8p23.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
DEL PEAK 14(8P23.2) CNV | 189 | 110 | 165 |
DEL PEAK 14(8P23.2) WILD-TYPE | 173 | 174 | 70 |
Figure S296. Get High-res Image Gene #41: 'Del Peak 14(8p23.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D41V10.png)
P value = 0.000126 (Chi-square test), Q value = 0.029
Table S297. Gene #42: 'Del Peak 15(8p11.21)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
DEL PEAK 15(8P11.21) CNV | 24 | 5 | 4 | 21 | 27 | 7 | 7 | 7 |
DEL PEAK 15(8P11.21) WILD-TYPE | 100 | 31 | 19 | 74 | 45 | 13 | 96 | 33 |
Figure S297. Get High-res Image Gene #42: 'Del Peak 15(8p11.21)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D42V1.png)
P value = 6.19e-11 (Chi-square test), Q value = 2.7e-08
Table S298. Gene #42: 'Del Peak 15(8p11.21)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
DEL PEAK 15(8P11.21) CNV | 45 | 47 | 7 | 74 | 0 |
DEL PEAK 15(8P11.21) WILD-TYPE | 302 | 175 | 65 | 149 | 49 |
Figure S298. Get High-res Image Gene #42: 'Del Peak 15(8p11.21)' versus Molecular Subtype #3: 'CN_CNMF'
![](D42V3.png)
P value = 0.000593 (Fisher's exact test), Q value = 0.12
Table S299. Gene #42: 'Del Peak 15(8p11.21)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
DEL PEAK 15(8P11.21) CNV | 64 | 18 | 79 |
DEL PEAK 15(8P11.21) WILD-TYPE | 170 | 130 | 367 |
Figure S299. Get High-res Image Gene #42: 'Del Peak 15(8p11.21)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D42V7.png)
P value = 0.000914 (Fisher's exact test), Q value = 0.17
Table S300. Gene #42: 'Del Peak 15(8p11.21)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
DEL PEAK 15(8P11.21) CNV | 28 | 77 | 56 |
DEL PEAK 15(8P11.21) WILD-TYPE | 188 | 331 | 148 |
Figure S300. Get High-res Image Gene #42: 'Del Peak 15(8p11.21)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D42V8.png)
P value = 6.26e-06 (Fisher's exact test), Q value = 0.0018
Table S301. Gene #42: 'Del Peak 15(8p11.21)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
DEL PEAK 15(8P11.21) CNV | 72 | 32 | 66 |
DEL PEAK 15(8P11.21) WILD-TYPE | 290 | 252 | 169 |
Figure S301. Get High-res Image Gene #42: 'Del Peak 15(8p11.21)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D42V10.png)
P value = 2.43e-06 (Chi-square test), Q value = 0.00072
Table S302. Gene #43: 'Del Peak 16(9p21.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
DEL PEAK 16(9P21.3) CNV | 62 | 13 | 9 | 29 | 38 | 8 | 23 | 5 |
DEL PEAK 16(9P21.3) WILD-TYPE | 62 | 23 | 14 | 66 | 34 | 12 | 80 | 35 |
Figure S302. Get High-res Image Gene #43: 'Del Peak 16(9p21.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D43V1.png)
P value = 0.00076 (Fisher's exact test), Q value = 0.14
Table S303. Gene #43: 'Del Peak 16(9p21.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 125 | 248 |
DEL PEAK 16(9P21.3) CNV | 35 | 43 | 109 |
DEL PEAK 16(9P21.3) WILD-TYPE | 105 | 82 | 139 |
Figure S303. Get High-res Image Gene #43: 'Del Peak 16(9p21.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D43V2.png)
P value = 1.11e-29 (Chi-square test), Q value = 6.8e-27
Table S304. Gene #43: 'Del Peak 16(9p21.3)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
DEL PEAK 16(9P21.3) CNV | 44 | 122 | 17 | 110 | 14 |
DEL PEAK 16(9P21.3) WILD-TYPE | 303 | 100 | 55 | 113 | 35 |
Figure S304. Get High-res Image Gene #43: 'Del Peak 16(9p21.3)' versus Molecular Subtype #3: 'CN_CNMF'
![](D43V3.png)
P value = 2.21e-15 (Chi-square test), Q value = 1.1e-12
Table S305. Gene #43: 'Del Peak 16(9p21.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
DEL PEAK 16(9P21.3) CNV | 37 | 14 | 38 | 72 | 8 | 15 |
DEL PEAK 16(9P21.3) WILD-TYPE | 64 | 125 | 55 | 65 | 32 | 82 |
Figure S305. Get High-res Image Gene #43: 'Del Peak 16(9p21.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D43V4.png)
P value = 7.31e-07 (Fisher's exact test), Q value = 0.00024
Table S306. Gene #43: 'Del Peak 16(9p21.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
DEL PEAK 16(9P21.3) CNV | 95 | 25 | 168 |
DEL PEAK 16(9P21.3) WILD-TYPE | 139 | 123 | 278 |
Figure S306. Get High-res Image Gene #43: 'Del Peak 16(9p21.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D43V7.png)
P value = 2.64e-07 (Fisher's exact test), Q value = 8.9e-05
Table S307. Gene #43: 'Del Peak 16(9p21.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
DEL PEAK 16(9P21.3) CNV | 43 | 165 | 80 |
DEL PEAK 16(9P21.3) WILD-TYPE | 173 | 243 | 124 |
Figure S307. Get High-res Image Gene #43: 'Del Peak 16(9p21.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D43V8.png)
P value = 4.02e-06 (Fisher's exact test), Q value = 0.0012
Table S308. Gene #43: 'Del Peak 16(9p21.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
DEL PEAK 16(9P21.3) CNV | 51 | 134 | 109 |
DEL PEAK 16(9P21.3) WILD-TYPE | 183 | 258 | 146 |
Figure S308. Get High-res Image Gene #43: 'Del Peak 16(9p21.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D43V9.png)
P value = 4.15e-12 (Fisher's exact test), Q value = 1.9e-09
Table S309. Gene #43: 'Del Peak 16(9p21.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
DEL PEAK 16(9P21.3) CNV | 146 | 49 | 99 |
DEL PEAK 16(9P21.3) WILD-TYPE | 216 | 235 | 136 |
Figure S309. Get High-res Image Gene #43: 'Del Peak 16(9p21.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D43V10.png)
P value = 0.00029 (Fisher's exact test), Q value = 0.06
Table S310. Gene #44: 'Del Peak 17(9q21.11)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 125 | 248 |
DEL PEAK 17(9Q21.11) CNV | 24 | 47 | 81 |
DEL PEAK 17(9Q21.11) WILD-TYPE | 116 | 78 | 167 |
Figure S310. Get High-res Image Gene #44: 'Del Peak 17(9q21.11)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D44V2.png)
P value = 3.41e-16 (Chi-square test), Q value = 1.8e-13
Table S311. Gene #44: 'Del Peak 17(9q21.11)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
DEL PEAK 17(9Q21.11) CNV | 41 | 77 | 17 | 97 | 14 |
DEL PEAK 17(9Q21.11) WILD-TYPE | 306 | 145 | 55 | 126 | 35 |
Figure S311. Get High-res Image Gene #44: 'Del Peak 17(9q21.11)' versus Molecular Subtype #3: 'CN_CNMF'
![](D44V3.png)
P value = 1.19e-10 (Chi-square test), Q value = 5.1e-08
Table S312. Gene #44: 'Del Peak 17(9q21.11)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
DEL PEAK 17(9Q21.11) CNV | 38 | 10 | 23 | 54 | 4 | 18 |
DEL PEAK 17(9Q21.11) WILD-TYPE | 63 | 129 | 70 | 83 | 36 | 79 |
Figure S312. Get High-res Image Gene #44: 'Del Peak 17(9q21.11)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D44V4.png)
P value = 1.04e-05 (Fisher's exact test), Q value = 0.0028
Table S313. Gene #44: 'Del Peak 17(9q21.11)' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 147 | 133 | 117 |
DEL PEAK 17(9Q21.11) CNV | 65 | 32 | 22 |
DEL PEAK 17(9Q21.11) WILD-TYPE | 82 | 101 | 95 |
Figure S313. Get High-res Image Gene #44: 'Del Peak 17(9q21.11)' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D44V5.png)
P value = 2.41e-06 (Fisher's exact test), Q value = 0.00072
Table S314. Gene #44: 'Del Peak 17(9q21.11)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
DEL PEAK 17(9Q21.11) CNV | 86 | 20 | 123 |
DEL PEAK 17(9Q21.11) WILD-TYPE | 148 | 128 | 323 |
Figure S314. Get High-res Image Gene #44: 'Del Peak 17(9q21.11)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D44V7.png)
P value = 8.3e-06 (Fisher's exact test), Q value = 0.0023
Table S315. Gene #44: 'Del Peak 17(9q21.11)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
DEL PEAK 17(9Q21.11) CNV | 35 | 120 | 74 |
DEL PEAK 17(9Q21.11) WILD-TYPE | 181 | 288 | 130 |
Figure S315. Get High-res Image Gene #44: 'Del Peak 17(9q21.11)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D44V8.png)
P value = 1.41e-08 (Fisher's exact test), Q value = 5.3e-06
Table S316. Gene #44: 'Del Peak 17(9q21.11)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
DEL PEAK 17(9Q21.11) CNV | 39 | 93 | 102 |
DEL PEAK 17(9Q21.11) WILD-TYPE | 195 | 299 | 153 |
Figure S316. Get High-res Image Gene #44: 'Del Peak 17(9q21.11)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D44V9.png)
P value = 9.33e-13 (Fisher's exact test), Q value = 4.4e-10
Table S317. Gene #44: 'Del Peak 17(9q21.11)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
DEL PEAK 17(9Q21.11) CNV | 102 | 36 | 96 |
DEL PEAK 17(9Q21.11) WILD-TYPE | 260 | 248 | 139 |
Figure S317. Get High-res Image Gene #44: 'Del Peak 17(9q21.11)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D44V10.png)
P value = 4.09e-05 (Chi-square test), Q value = 0.01
Table S318. Gene #45: 'Del Peak 18(10q23.31)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
DEL PEAK 18(10Q23.31) CNV | 36 | 7 | 7 | 45 | 20 | 7 | 22 | 2 |
DEL PEAK 18(10Q23.31) WILD-TYPE | 88 | 29 | 16 | 50 | 52 | 13 | 81 | 38 |
Figure S318. Get High-res Image Gene #45: 'Del Peak 18(10q23.31)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D45V1.png)
P value = 9.57e-05 (Fisher's exact test), Q value = 0.022
Table S319. Gene #45: 'Del Peak 18(10q23.31)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 125 | 248 |
DEL PEAK 18(10Q23.31) CNV | 26 | 53 | 67 |
DEL PEAK 18(10Q23.31) WILD-TYPE | 114 | 72 | 181 |
Figure S319. Get High-res Image Gene #45: 'Del Peak 18(10q23.31)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D45V2.png)
P value = 3.83e-20 (Chi-square test), Q value = 2.2e-17
Table S320. Gene #45: 'Del Peak 18(10q23.31)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
DEL PEAK 18(10Q23.31) CNV | 45 | 72 | 17 | 113 | 14 |
DEL PEAK 18(10Q23.31) WILD-TYPE | 302 | 150 | 55 | 110 | 35 |
Figure S320. Get High-res Image Gene #45: 'Del Peak 18(10q23.31)' versus Molecular Subtype #3: 'CN_CNMF'
![](D45V3.png)
P value = 4.75e-12 (Chi-square test), Q value = 2.2e-09
Table S321. Gene #45: 'Del Peak 18(10q23.31)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
DEL PEAK 18(10Q23.31) CNV | 55 | 22 | 23 | 53 | 7 | 15 |
DEL PEAK 18(10Q23.31) WILD-TYPE | 46 | 117 | 70 | 84 | 33 | 82 |
Figure S321. Get High-res Image Gene #45: 'Del Peak 18(10q23.31)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D45V4.png)
P value = 1.9e-07 (Fisher's exact test), Q value = 6.5e-05
Table S322. Gene #45: 'Del Peak 18(10q23.31)' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 147 | 133 | 117 |
DEL PEAK 18(10Q23.31) CNV | 67 | 30 | 19 |
DEL PEAK 18(10Q23.31) WILD-TYPE | 80 | 103 | 98 |
Figure S322. Get High-res Image Gene #45: 'Del Peak 18(10q23.31)' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D45V5.png)
P value = 7.37e-05 (Fisher's exact test), Q value = 0.018
Table S323. Gene #45: 'Del Peak 18(10q23.31)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 161 | 110 | 126 |
DEL PEAK 18(10Q23.31) CNV | 45 | 18 | 53 |
DEL PEAK 18(10Q23.31) WILD-TYPE | 116 | 92 | 73 |
Figure S323. Get High-res Image Gene #45: 'Del Peak 18(10q23.31)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D45V6.png)
P value = 1.06e-11 (Fisher's exact test), Q value = 4.7e-09
Table S324. Gene #45: 'Del Peak 18(10q23.31)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
DEL PEAK 18(10Q23.31) CNV | 108 | 21 | 115 |
DEL PEAK 18(10Q23.31) WILD-TYPE | 126 | 127 | 331 |
Figure S324. Get High-res Image Gene #45: 'Del Peak 18(10q23.31)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D45V7.png)
P value = 6.91e-09 (Fisher's exact test), Q value = 2.7e-06
Table S325. Gene #45: 'Del Peak 18(10q23.31)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
DEL PEAK 18(10Q23.31) CNV | 39 | 113 | 92 |
DEL PEAK 18(10Q23.31) WILD-TYPE | 177 | 295 | 112 |
Figure S325. Get High-res Image Gene #45: 'Del Peak 18(10q23.31)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D45V8.png)
P value = 5.47e-09 (Fisher's exact test), Q value = 2.2e-06
Table S326. Gene #45: 'Del Peak 18(10q23.31)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
DEL PEAK 18(10Q23.31) CNV | 49 | 92 | 111 |
DEL PEAK 18(10Q23.31) WILD-TYPE | 185 | 300 | 144 |
Figure S326. Get High-res Image Gene #45: 'Del Peak 18(10q23.31)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D45V9.png)
P value = 3.97e-09 (Fisher's exact test), Q value = 1.6e-06
Table S327. Gene #45: 'Del Peak 18(10q23.31)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
DEL PEAK 18(10Q23.31) CNV | 97 | 53 | 102 |
DEL PEAK 18(10Q23.31) WILD-TYPE | 265 | 231 | 133 |
Figure S327. Get High-res Image Gene #45: 'Del Peak 18(10q23.31)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D45V10.png)
P value = 2.88e-08 (Chi-square test), Q value = 1.1e-05
Table S328. Gene #46: 'Del Peak 19(10q26.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
DEL PEAK 19(10Q26.3) CNV | 38 | 9 | 8 | 52 | 21 | 6 | 16 | 3 |
DEL PEAK 19(10Q26.3) WILD-TYPE | 86 | 27 | 15 | 43 | 51 | 14 | 87 | 37 |
Figure S328. Get High-res Image Gene #46: 'Del Peak 19(10q26.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D46V1.png)
P value = 1.49e-07 (Fisher's exact test), Q value = 5.2e-05
Table S329. Gene #46: 'Del Peak 19(10q26.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 125 | 248 |
DEL PEAK 19(10Q26.3) CNV | 22 | 59 | 72 |
DEL PEAK 19(10Q26.3) WILD-TYPE | 118 | 66 | 176 |
Figure S329. Get High-res Image Gene #46: 'Del Peak 19(10q26.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D46V2.png)
P value = 2.23e-22 (Chi-square test), Q value = 1.3e-19
Table S330. Gene #46: 'Del Peak 19(10q26.3)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
DEL PEAK 19(10Q26.3) CNV | 45 | 77 | 15 | 116 | 11 |
DEL PEAK 19(10Q26.3) WILD-TYPE | 302 | 145 | 57 | 107 | 38 |
Figure S330. Get High-res Image Gene #46: 'Del Peak 19(10q26.3)' versus Molecular Subtype #3: 'CN_CNMF'
![](D46V3.png)
P value = 2.07e-12 (Chi-square test), Q value = 9.5e-10
Table S331. Gene #46: 'Del Peak 19(10q26.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
DEL PEAK 19(10Q26.3) CNV | 57 | 18 | 28 | 45 | 8 | 17 |
DEL PEAK 19(10Q26.3) WILD-TYPE | 44 | 121 | 65 | 92 | 32 | 80 |
Figure S331. Get High-res Image Gene #46: 'Del Peak 19(10q26.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D46V4.png)
P value = 3.06e-08 (Fisher's exact test), Q value = 1.1e-05
Table S332. Gene #46: 'Del Peak 19(10q26.3)' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 147 | 133 | 117 |
DEL PEAK 19(10Q26.3) CNV | 72 | 27 | 24 |
DEL PEAK 19(10Q26.3) WILD-TYPE | 75 | 106 | 93 |
Figure S332. Get High-res Image Gene #46: 'Del Peak 19(10q26.3)' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D46V5.png)
P value = 8.25e-07 (Fisher's exact test), Q value = 0.00026
Table S333. Gene #46: 'Del Peak 19(10q26.3)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 161 | 110 | 126 |
DEL PEAK 19(10Q26.3) CNV | 45 | 18 | 60 |
DEL PEAK 19(10Q26.3) WILD-TYPE | 116 | 92 | 66 |
Figure S333. Get High-res Image Gene #46: 'Del Peak 19(10q26.3)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D46V6.png)
P value = 1.77e-15 (Fisher's exact test), Q value = 9.2e-13
Table S334. Gene #46: 'Del Peak 19(10q26.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
DEL PEAK 19(10Q26.3) CNV | 115 | 18 | 114 |
DEL PEAK 19(10Q26.3) WILD-TYPE | 119 | 130 | 332 |
Figure S334. Get High-res Image Gene #46: 'Del Peak 19(10q26.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D46V7.png)
P value = 1.17e-12 (Fisher's exact test), Q value = 5.4e-10
Table S335. Gene #46: 'Del Peak 19(10q26.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
DEL PEAK 19(10Q26.3) CNV | 34 | 114 | 99 |
DEL PEAK 19(10Q26.3) WILD-TYPE | 182 | 294 | 105 |
Figure S335. Get High-res Image Gene #46: 'Del Peak 19(10q26.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D46V8.png)
P value = 7.81e-12 (Fisher's exact test), Q value = 3.5e-09
Table S336. Gene #46: 'Del Peak 19(10q26.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
DEL PEAK 19(10Q26.3) CNV | 44 | 92 | 117 |
DEL PEAK 19(10Q26.3) WILD-TYPE | 190 | 300 | 138 |
Figure S336. Get High-res Image Gene #46: 'Del Peak 19(10q26.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D46V9.png)
P value = 3.48e-15 (Fisher's exact test), Q value = 1.8e-12
Table S337. Gene #46: 'Del Peak 19(10q26.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
DEL PEAK 19(10Q26.3) CNV | 100 | 42 | 111 |
DEL PEAK 19(10Q26.3) WILD-TYPE | 262 | 242 | 124 |
Figure S337. Get High-res Image Gene #46: 'Del Peak 19(10q26.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D46V10.png)
P value = 1.34e-06 (Chi-square test), Q value = 0.00042
Table S338. Gene #47: 'Del Peak 20(11p15.5)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
DEL PEAK 20(11P15.5) CNV | 33 | 8 | 3 | 45 | 32 | 7 | 15 | 8 |
DEL PEAK 20(11P15.5) WILD-TYPE | 91 | 28 | 20 | 50 | 40 | 13 | 88 | 32 |
Figure S338. Get High-res Image Gene #47: 'Del Peak 20(11p15.5)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D47V1.png)
P value = 1.62e-07 (Fisher's exact test), Q value = 5.6e-05
Table S339. Gene #47: 'Del Peak 20(11p15.5)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 125 | 248 |
DEL PEAK 20(11P15.5) CNV | 29 | 62 | 60 |
DEL PEAK 20(11P15.5) WILD-TYPE | 111 | 63 | 188 |
Figure S339. Get High-res Image Gene #47: 'Del Peak 20(11p15.5)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D47V2.png)
P value = 5.01e-36 (Chi-square test), Q value = 3.1e-33
Table S340. Gene #47: 'Del Peak 20(11p15.5)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
DEL PEAK 20(11P15.5) CNV | 35 | 69 | 15 | 134 | 9 |
DEL PEAK 20(11P15.5) WILD-TYPE | 312 | 153 | 57 | 89 | 40 |
Figure S340. Get High-res Image Gene #47: 'Del Peak 20(11p15.5)' versus Molecular Subtype #3: 'CN_CNMF'
![](D47V3.png)
P value = 1.96e-12 (Chi-square test), Q value = 9e-10
Table S341. Gene #47: 'Del Peak 20(11p15.5)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
DEL PEAK 20(11P15.5) CNV | 54 | 15 | 27 | 42 | 10 | 14 |
DEL PEAK 20(11P15.5) WILD-TYPE | 47 | 124 | 66 | 95 | 30 | 83 |
Figure S341. Get High-res Image Gene #47: 'Del Peak 20(11p15.5)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D47V4.png)
P value = 1.27e-09 (Fisher's exact test), Q value = 5.1e-07
Table S342. Gene #47: 'Del Peak 20(11p15.5)' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 147 | 133 | 117 |
DEL PEAK 20(11P15.5) CNV | 76 | 26 | 25 |
DEL PEAK 20(11P15.5) WILD-TYPE | 71 | 107 | 92 |
Figure S342. Get High-res Image Gene #47: 'Del Peak 20(11p15.5)' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D47V5.png)
P value = 1.65e-06 (Fisher's exact test), Q value = 5e-04
Table S343. Gene #47: 'Del Peak 20(11p15.5)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 161 | 110 | 126 |
DEL PEAK 20(11P15.5) CNV | 38 | 26 | 63 |
DEL PEAK 20(11P15.5) WILD-TYPE | 123 | 84 | 63 |
Figure S343. Get High-res Image Gene #47: 'Del Peak 20(11p15.5)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D47V6.png)
P value = 8.07e-18 (Fisher's exact test), Q value = 4.4e-15
Table S344. Gene #47: 'Del Peak 20(11p15.5)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
DEL PEAK 20(11P15.5) CNV | 121 | 22 | 100 |
DEL PEAK 20(11P15.5) WILD-TYPE | 113 | 126 | 346 |
Figure S344. Get High-res Image Gene #47: 'Del Peak 20(11p15.5)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D47V7.png)
P value = 5.07e-13 (Fisher's exact test), Q value = 2.4e-10
Table S345. Gene #47: 'Del Peak 20(11p15.5)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
DEL PEAK 20(11P15.5) CNV | 42 | 98 | 103 |
DEL PEAK 20(11P15.5) WILD-TYPE | 174 | 310 | 101 |
Figure S345. Get High-res Image Gene #47: 'Del Peak 20(11p15.5)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D47V8.png)
P value = 3.87e-15 (Fisher's exact test), Q value = 2e-12
Table S346. Gene #47: 'Del Peak 20(11p15.5)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
DEL PEAK 20(11P15.5) CNV | 43 | 85 | 123 |
DEL PEAK 20(11P15.5) WILD-TYPE | 191 | 307 | 132 |
Figure S346. Get High-res Image Gene #47: 'Del Peak 20(11p15.5)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D47V9.png)
P value = 1.42e-16 (Fisher's exact test), Q value = 7.6e-14
Table S347. Gene #47: 'Del Peak 20(11p15.5)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
DEL PEAK 20(11P15.5) CNV | 93 | 43 | 115 |
DEL PEAK 20(11P15.5) WILD-TYPE | 269 | 241 | 120 |
Figure S347. Get High-res Image Gene #47: 'Del Peak 20(11p15.5)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D47V10.png)
P value = 3.51e-17 (Chi-square test), Q value = 1.9e-14
Table S348. Gene #48: 'Del Peak 21(11q13.1)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
DEL PEAK 21(11Q13.1) CNV | 30 | 88 | 23 | 44 | 9 |
DEL PEAK 21(11Q13.1) WILD-TYPE | 317 | 134 | 49 | 179 | 40 |
Figure S348. Get High-res Image Gene #48: 'Del Peak 21(11q13.1)' versus Molecular Subtype #3: 'CN_CNMF'
![](D48V3.png)
P value = 4.39e-06 (Chi-square test), Q value = 0.0013
Table S349. Gene #48: 'Del Peak 21(11q13.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
DEL PEAK 21(11Q13.1) CNV | 18 | 19 | 26 | 47 | 7 | 8 |
DEL PEAK 21(11Q13.1) WILD-TYPE | 83 | 120 | 67 | 90 | 33 | 89 |
Figure S349. Get High-res Image Gene #48: 'Del Peak 21(11q13.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D48V4.png)
P value = 2.08e-08 (Chi-square test), Q value = 7.7e-06
Table S350. Gene #49: 'Del Peak 22(11q23.2)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
DEL PEAK 22(11Q23.2) CNV | 92 | 21 | 12 | 36 | 37 | 11 | 33 | 22 |
DEL PEAK 22(11Q23.2) WILD-TYPE | 32 | 15 | 11 | 59 | 35 | 9 | 70 | 18 |
Figure S350. Get High-res Image Gene #49: 'Del Peak 22(11q23.2)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D49V1.png)
P value = 3.22e-42 (Chi-square test), Q value = 2e-39
Table S351. Gene #49: 'Del Peak 22(11q23.2)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
DEL PEAK 22(11Q23.2) CNV | 93 | 193 | 35 | 111 | 17 |
DEL PEAK 22(11Q23.2) WILD-TYPE | 254 | 29 | 37 | 112 | 32 |
Figure S351. Get High-res Image Gene #49: 'Del Peak 22(11q23.2)' versus Molecular Subtype #3: 'CN_CNMF'
![](D49V3.png)
P value = 7.68e-12 (Chi-square test), Q value = 3.4e-09
Table S352. Gene #49: 'Del Peak 22(11q23.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
DEL PEAK 22(11Q23.2) CNV | 41 | 49 | 57 | 98 | 20 | 29 |
DEL PEAK 22(11Q23.2) WILD-TYPE | 60 | 90 | 36 | 39 | 20 | 68 |
Figure S352. Get High-res Image Gene #49: 'Del Peak 22(11q23.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D49V4.png)
P value = 0.000137 (Fisher's exact test), Q value = 0.031
Table S353. Gene #49: 'Del Peak 22(11q23.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
DEL PEAK 22(11Q23.2) CNV | 209 | 125 | 100 |
DEL PEAK 22(11Q23.2) WILD-TYPE | 153 | 159 | 135 |
Figure S353. Get High-res Image Gene #49: 'Del Peak 22(11q23.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D49V10.png)
P value = 0.000243 (Chi-square test), Q value = 0.052
Table S354. Gene #50: 'Del Peak 23(11q25)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
DEL PEAK 23(11Q25) CNV | 79 | 20 | 10 | 44 | 37 | 12 | 31 | 20 |
DEL PEAK 23(11Q25) WILD-TYPE | 45 | 16 | 13 | 51 | 35 | 8 | 72 | 20 |
Figure S354. Get High-res Image Gene #50: 'Del Peak 23(11q25)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D50V1.png)
P value = 6.15e-38 (Chi-square test), Q value = 3.8e-35
Table S355. Gene #50: 'Del Peak 23(11q25)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
DEL PEAK 23(11Q25) CNV | 81 | 177 | 34 | 114 | 15 |
DEL PEAK 23(11Q25) WILD-TYPE | 266 | 45 | 38 | 109 | 34 |
Figure S355. Get High-res Image Gene #50: 'Del Peak 23(11q25)' versus Molecular Subtype #3: 'CN_CNMF'
![](D50V3.png)
P value = 9.89e-09 (Chi-square test), Q value = 3.8e-06
Table S356. Gene #50: 'Del Peak 23(11q25)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
DEL PEAK 23(11Q25) CNV | 46 | 42 | 53 | 86 | 16 | 28 |
DEL PEAK 23(11Q25) WILD-TYPE | 55 | 97 | 40 | 51 | 24 | 69 |
Figure S356. Get High-res Image Gene #50: 'Del Peak 23(11q25)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D50V4.png)
P value = 0.000979 (Chi-square test), Q value = 0.18
Table S357. Gene #51: 'Del Peak 24(12p13.1)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
DEL PEAK 24(12P13.1) CNV | 40 | 46 | 11 | 54 | 6 |
DEL PEAK 24(12P13.1) WILD-TYPE | 307 | 176 | 61 | 169 | 43 |
Figure S357. Get High-res Image Gene #51: 'Del Peak 24(12p13.1)' versus Molecular Subtype #3: 'CN_CNMF'
![](D51V3.png)
P value = 0.00021 (Fisher's exact test), Q value = 0.046
Table S358. Gene #51: 'Del Peak 24(12p13.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
DEL PEAK 24(12P13.1) CNV | 63 | 19 | 67 |
DEL PEAK 24(12P13.1) WILD-TYPE | 171 | 129 | 379 |
Figure S358. Get High-res Image Gene #51: 'Del Peak 24(12p13.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D51V7.png)
P value = 8.03e-05 (Fisher's exact test), Q value = 0.019
Table S359. Gene #51: 'Del Peak 24(12p13.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
DEL PEAK 24(12P13.1) CNV | 30 | 56 | 67 |
DEL PEAK 24(12P13.1) WILD-TYPE | 204 | 336 | 188 |
Figure S359. Get High-res Image Gene #51: 'Del Peak 24(12p13.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D51V9.png)
P value = 8.68e-06 (Fisher's exact test), Q value = 0.0024
Table S360. Gene #51: 'Del Peak 24(12p13.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
DEL PEAK 24(12P13.1) CNV | 60 | 30 | 63 |
DEL PEAK 24(12P13.1) WILD-TYPE | 302 | 254 | 172 |
Figure S360. Get High-res Image Gene #51: 'Del Peak 24(12p13.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D51V10.png)
P value = 9.6e-11 (Chi-square test), Q value = 4.1e-08
Table S361. Gene #52: 'Del Peak 25(12q24.21)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
DEL PEAK 25(12Q24.21) CNV | 17 | 5 | 3 | 41 | 22 | 3 | 4 | 5 |
DEL PEAK 25(12Q24.21) WILD-TYPE | 107 | 31 | 20 | 54 | 50 | 17 | 99 | 35 |
Figure S361. Get High-res Image Gene #52: 'Del Peak 25(12q24.21)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D52V1.png)
P value = 2.5e-10 (Fisher's exact test), Q value = 1e-07
Table S362. Gene #52: 'Del Peak 25(12q24.21)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 125 | 248 |
DEL PEAK 25(12Q24.21) CNV | 14 | 51 | 35 |
DEL PEAK 25(12Q24.21) WILD-TYPE | 126 | 74 | 213 |
Figure S362. Get High-res Image Gene #52: 'Del Peak 25(12q24.21)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D52V2.png)
P value = 2.33e-15 (Chi-square test), Q value = 1.2e-12
Table S363. Gene #52: 'Del Peak 25(12q24.21)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
DEL PEAK 25(12Q24.21) CNV | 38 | 30 | 16 | 85 | 5 |
DEL PEAK 25(12Q24.21) WILD-TYPE | 309 | 192 | 56 | 138 | 44 |
Figure S363. Get High-res Image Gene #52: 'Del Peak 25(12q24.21)' versus Molecular Subtype #3: 'CN_CNMF'
![](D52V3.png)
P value = 2.68e-14 (Chi-square test), Q value = 1.3e-11
Table S364. Gene #52: 'Del Peak 25(12q24.21)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
DEL PEAK 25(12Q24.21) CNV | 48 | 13 | 14 | 20 | 2 | 14 |
DEL PEAK 25(12Q24.21) WILD-TYPE | 53 | 126 | 79 | 117 | 38 | 83 |
Figure S364. Get High-res Image Gene #52: 'Del Peak 25(12q24.21)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D52V4.png)
P value = 0.000209 (Fisher's exact test), Q value = 0.046
Table S365. Gene #52: 'Del Peak 25(12q24.21)' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 147 | 133 | 117 |
DEL PEAK 25(12Q24.21) CNV | 44 | 14 | 21 |
DEL PEAK 25(12Q24.21) WILD-TYPE | 103 | 119 | 96 |
Figure S365. Get High-res Image Gene #52: 'Del Peak 25(12q24.21)' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D52V5.png)
P value = 1.05e-06 (Fisher's exact test), Q value = 0.00033
Table S366. Gene #52: 'Del Peak 25(12q24.21)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 161 | 110 | 126 |
DEL PEAK 25(12Q24.21) CNV | 22 | 12 | 45 |
DEL PEAK 25(12Q24.21) WILD-TYPE | 139 | 98 | 81 |
Figure S366. Get High-res Image Gene #52: 'Del Peak 25(12q24.21)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D52V6.png)
P value = 6.55e-16 (Fisher's exact test), Q value = 3.5e-13
Table S367. Gene #52: 'Del Peak 25(12q24.21)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
DEL PEAK 25(12Q24.21) CNV | 86 | 15 | 49 |
DEL PEAK 25(12Q24.21) WILD-TYPE | 148 | 133 | 397 |
Figure S367. Get High-res Image Gene #52: 'Del Peak 25(12q24.21)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D52V7.png)
P value = 3.47e-13 (Fisher's exact test), Q value = 1.6e-10
Table S368. Gene #52: 'Del Peak 25(12q24.21)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
DEL PEAK 25(12Q24.21) CNV | 23 | 52 | 75 |
DEL PEAK 25(12Q24.21) WILD-TYPE | 193 | 356 | 129 |
Figure S368. Get High-res Image Gene #52: 'Del Peak 25(12q24.21)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D52V8.png)
P value = 1.17e-08 (Fisher's exact test), Q value = 4.5e-06
Table S369. Gene #52: 'Del Peak 25(12q24.21)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
DEL PEAK 25(12Q24.21) CNV | 32 | 53 | 81 |
DEL PEAK 25(12Q24.21) WILD-TYPE | 202 | 339 | 174 |
Figure S369. Get High-res Image Gene #52: 'Del Peak 25(12q24.21)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D52V9.png)
P value = 3.27e-13 (Fisher's exact test), Q value = 1.6e-10
Table S370. Gene #52: 'Del Peak 25(12q24.21)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
DEL PEAK 25(12Q24.21) CNV | 47 | 34 | 85 |
DEL PEAK 25(12Q24.21) WILD-TYPE | 315 | 250 | 150 |
Figure S370. Get High-res Image Gene #52: 'Del Peak 25(12q24.21)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D52V10.png)
P value = 2.15e-05 (Chi-square test), Q value = 0.0057
Table S371. Gene #53: 'Del Peak 26(13q14.2)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
DEL PEAK 26(13Q14.2) CNV | 74 | 13 | 7 | 55 | 39 | 9 | 31 | 13 |
DEL PEAK 26(13Q14.2) WILD-TYPE | 50 | 23 | 16 | 40 | 33 | 11 | 72 | 27 |
Figure S371. Get High-res Image Gene #53: 'Del Peak 26(13q14.2)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D53V1.png)
P value = 4.23e-05 (Fisher's exact test), Q value = 0.011
Table S372. Gene #53: 'Del Peak 26(13q14.2)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 125 | 248 |
DEL PEAK 26(13Q14.2) CNV | 46 | 75 | 120 |
DEL PEAK 26(13Q14.2) WILD-TYPE | 94 | 50 | 128 |
Figure S372. Get High-res Image Gene #53: 'Del Peak 26(13q14.2)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D53V2.png)
P value = 7.07e-28 (Chi-square test), Q value = 4.3e-25
Table S373. Gene #53: 'Del Peak 26(13q14.2)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
DEL PEAK 26(13Q14.2) CNV | 73 | 138 | 41 | 130 | 31 |
DEL PEAK 26(13Q14.2) WILD-TYPE | 274 | 84 | 31 | 93 | 18 |
Figure S373. Get High-res Image Gene #53: 'Del Peak 26(13q14.2)' versus Molecular Subtype #3: 'CN_CNMF'
![](D53V3.png)
P value = 1.81e-08 (Chi-square test), Q value = 6.8e-06
Table S374. Gene #53: 'Del Peak 26(13q14.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
DEL PEAK 26(13Q14.2) CNV | 61 | 39 | 50 | 75 | 11 | 32 |
DEL PEAK 26(13Q14.2) WILD-TYPE | 40 | 100 | 43 | 62 | 29 | 65 |
Figure S374. Get High-res Image Gene #53: 'Del Peak 26(13q14.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D53V4.png)
P value = 1.55e-07 (Fisher's exact test), Q value = 5.4e-05
Table S375. Gene #53: 'Del Peak 26(13q14.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
DEL PEAK 26(13Q14.2) CNV | 136 | 43 | 207 |
DEL PEAK 26(13Q14.2) WILD-TYPE | 98 | 105 | 239 |
Figure S375. Get High-res Image Gene #53: 'Del Peak 26(13q14.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D53V7.png)
P value = 6.39e-06 (Fisher's exact test), Q value = 0.0018
Table S376. Gene #53: 'Del Peak 26(13q14.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
DEL PEAK 26(13Q14.2) CNV | 74 | 194 | 118 |
DEL PEAK 26(13Q14.2) WILD-TYPE | 142 | 214 | 86 |
Figure S376. Get High-res Image Gene #53: 'Del Peak 26(13q14.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D53V8.png)
P value = 3.86e-10 (Fisher's exact test), Q value = 1.6e-07
Table S377. Gene #53: 'Del Peak 26(13q14.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
DEL PEAK 26(13Q14.2) CNV | 69 | 182 | 150 |
DEL PEAK 26(13Q14.2) WILD-TYPE | 165 | 210 | 105 |
Figure S377. Get High-res Image Gene #53: 'Del Peak 26(13q14.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D53V9.png)
P value = 1.12e-07 (Fisher's exact test), Q value = 3.9e-05
Table S378. Gene #53: 'Del Peak 26(13q14.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
DEL PEAK 26(13Q14.2) CNV | 172 | 94 | 135 |
DEL PEAK 26(13Q14.2) WILD-TYPE | 190 | 190 | 100 |
Figure S378. Get High-res Image Gene #53: 'Del Peak 26(13q14.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D53V10.png)
P value = 4e-13 (Chi-square test), Q value = 1.9e-10
Table S379. Gene #54: 'Del Peak 27(14q24.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
DEL PEAK 27(14Q24.3) CNV | 51 | 8 | 4 | 57 | 22 | 10 | 9 | 8 |
DEL PEAK 27(14Q24.3) WILD-TYPE | 73 | 28 | 19 | 38 | 50 | 10 | 94 | 32 |
Figure S379. Get High-res Image Gene #54: 'Del Peak 27(14q24.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D54V1.png)
P value = 1.56e-08 (Fisher's exact test), Q value = 5.9e-06
Table S380. Gene #54: 'Del Peak 27(14q24.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 125 | 248 |
DEL PEAK 27(14Q24.3) CNV | 33 | 69 | 67 |
DEL PEAK 27(14Q24.3) WILD-TYPE | 107 | 56 | 181 |
Figure S380. Get High-res Image Gene #54: 'Del Peak 27(14q24.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D54V2.png)
P value = 8.6e-37 (Chi-square test), Q value = 5.3e-34
Table S381. Gene #54: 'Del Peak 27(14q24.3)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
DEL PEAK 27(14Q24.3) CNV | 42 | 76 | 14 | 143 | 19 |
DEL PEAK 27(14Q24.3) WILD-TYPE | 305 | 146 | 58 | 80 | 30 |
Figure S381. Get High-res Image Gene #54: 'Del Peak 27(14q24.3)' versus Molecular Subtype #3: 'CN_CNMF'
![](D54V3.png)
P value = 3.5e-14 (Chi-square test), Q value = 1.7e-11
Table S382. Gene #54: 'Del Peak 27(14q24.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
DEL PEAK 27(14Q24.3) CNV | 60 | 16 | 28 | 53 | 8 | 22 |
DEL PEAK 27(14Q24.3) WILD-TYPE | 41 | 123 | 65 | 84 | 32 | 75 |
Figure S382. Get High-res Image Gene #54: 'Del Peak 27(14q24.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D54V4.png)
P value = 5.29e-07 (Fisher's exact test), Q value = 0.00017
Table S383. Gene #54: 'Del Peak 27(14q24.3)' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 147 | 133 | 117 |
DEL PEAK 27(14Q24.3) CNV | 74 | 29 | 31 |
DEL PEAK 27(14Q24.3) WILD-TYPE | 73 | 104 | 86 |
Figure S383. Get High-res Image Gene #54: 'Del Peak 27(14q24.3)' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D54V5.png)
P value = 5.53e-06 (Fisher's exact test), Q value = 0.0016
Table S384. Gene #54: 'Del Peak 27(14q24.3)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 161 | 110 | 126 |
DEL PEAK 27(14Q24.3) CNV | 45 | 25 | 64 |
DEL PEAK 27(14Q24.3) WILD-TYPE | 116 | 85 | 62 |
Figure S384. Get High-res Image Gene #54: 'Del Peak 27(14q24.3)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D54V6.png)
P value = 3.86e-15 (Fisher's exact test), Q value = 2e-12
Table S385. Gene #54: 'Del Peak 27(14q24.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
DEL PEAK 27(14Q24.3) CNV | 124 | 25 | 120 |
DEL PEAK 27(14Q24.3) WILD-TYPE | 110 | 123 | 326 |
Figure S385. Get High-res Image Gene #54: 'Del Peak 27(14q24.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D54V7.png)
P value = 3.04e-13 (Fisher's exact test), Q value = 1.5e-10
Table S386. Gene #54: 'Del Peak 27(14q24.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
DEL PEAK 27(14Q24.3) CNV | 41 | 120 | 108 |
DEL PEAK 27(14Q24.3) WILD-TYPE | 175 | 288 | 96 |
Figure S386. Get High-res Image Gene #54: 'Del Peak 27(14q24.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D54V8.png)
P value = 5.44e-18 (Fisher's exact test), Q value = 3e-15
Table S387. Gene #54: 'Del Peak 27(14q24.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
DEL PEAK 27(14Q24.3) CNV | 51 | 91 | 138 |
DEL PEAK 27(14Q24.3) WILD-TYPE | 183 | 301 | 117 |
Figure S387. Get High-res Image Gene #54: 'Del Peak 27(14q24.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D54V9.png)
P value = 1.52e-16 (Fisher's exact test), Q value = 8.1e-14
Table S388. Gene #54: 'Del Peak 27(14q24.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
DEL PEAK 27(14Q24.3) CNV | 102 | 53 | 125 |
DEL PEAK 27(14Q24.3) WILD-TYPE | 260 | 231 | 110 |
Figure S388. Get High-res Image Gene #54: 'Del Peak 27(14q24.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D54V10.png)
P value = 3.46e-07 (Chi-square test), Q value = 0.00012
Table S389. Gene #55: 'Del Peak 28(15q13.1)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
DEL PEAK 28(15Q13.1) CNV | 41 | 11 | 7 | 56 | 33 | 10 | 22 | 7 |
DEL PEAK 28(15Q13.1) WILD-TYPE | 83 | 25 | 16 | 39 | 39 | 10 | 81 | 33 |
Figure S389. Get High-res Image Gene #55: 'Del Peak 28(15q13.1)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D55V1.png)
P value = 7.57e-08 (Fisher's exact test), Q value = 2.7e-05
Table S390. Gene #55: 'Del Peak 28(15q13.1)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 125 | 248 |
DEL PEAK 28(15Q13.1) CNV | 29 | 68 | 90 |
DEL PEAK 28(15Q13.1) WILD-TYPE | 111 | 57 | 158 |
Figure S390. Get High-res Image Gene #55: 'Del Peak 28(15q13.1)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D55V2.png)
P value = 6.74e-31 (Chi-square test), Q value = 4.1e-28
Table S391. Gene #55: 'Del Peak 28(15q13.1)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
DEL PEAK 28(15Q13.1) CNV | 56 | 68 | 35 | 143 | 13 |
DEL PEAK 28(15Q13.1) WILD-TYPE | 291 | 154 | 37 | 80 | 36 |
Figure S391. Get High-res Image Gene #55: 'Del Peak 28(15q13.1)' versus Molecular Subtype #3: 'CN_CNMF'
![](D55V3.png)
P value = 1.2e-11 (Chi-square test), Q value = 5.3e-09
Table S392. Gene #55: 'Del Peak 28(15q13.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
DEL PEAK 28(15Q13.1) CNV | 63 | 25 | 30 | 52 | 8 | 25 |
DEL PEAK 28(15Q13.1) WILD-TYPE | 38 | 114 | 63 | 85 | 32 | 72 |
Figure S392. Get High-res Image Gene #55: 'Del Peak 28(15q13.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D55V4.png)
P value = 0.000193 (Fisher's exact test), Q value = 0.043
Table S393. Gene #55: 'Del Peak 28(15q13.1)' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 147 | 133 | 117 |
DEL PEAK 28(15Q13.1) CNV | 76 | 39 | 38 |
DEL PEAK 28(15Q13.1) WILD-TYPE | 71 | 94 | 79 |
Figure S393. Get High-res Image Gene #55: 'Del Peak 28(15q13.1)' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D55V5.png)
P value = 2.32e-05 (Fisher's exact test), Q value = 0.0061
Table S394. Gene #55: 'Del Peak 28(15q13.1)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 161 | 110 | 126 |
DEL PEAK 28(15Q13.1) CNV | 54 | 30 | 69 |
DEL PEAK 28(15Q13.1) WILD-TYPE | 107 | 80 | 57 |
Figure S394. Get High-res Image Gene #55: 'Del Peak 28(15q13.1)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D55V6.png)
P value = 6.07e-15 (Fisher's exact test), Q value = 3.1e-12
Table S395. Gene #55: 'Del Peak 28(15q13.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
DEL PEAK 28(15Q13.1) CNV | 127 | 24 | 137 |
DEL PEAK 28(15Q13.1) WILD-TYPE | 107 | 124 | 309 |
Figure S395. Get High-res Image Gene #55: 'Del Peak 28(15q13.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D55V7.png)
P value = 2.32e-14 (Fisher's exact test), Q value = 1.2e-11
Table S396. Gene #55: 'Del Peak 28(15q13.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
DEL PEAK 28(15Q13.1) CNV | 44 | 129 | 115 |
DEL PEAK 28(15Q13.1) WILD-TYPE | 172 | 279 | 89 |
Figure S396. Get High-res Image Gene #55: 'Del Peak 28(15q13.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D55V8.png)
P value = 6.32e-19 (Fisher's exact test), Q value = 3.6e-16
Table S397. Gene #55: 'Del Peak 28(15q13.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
DEL PEAK 28(15Q13.1) CNV | 47 | 110 | 145 |
DEL PEAK 28(15Q13.1) WILD-TYPE | 187 | 282 | 110 |
Figure S397. Get High-res Image Gene #55: 'Del Peak 28(15q13.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D55V9.png)
P value = 1.96e-18 (Fisher's exact test), Q value = 1.1e-15
Table S398. Gene #55: 'Del Peak 28(15q13.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
DEL PEAK 28(15Q13.1) CNV | 112 | 56 | 134 |
DEL PEAK 28(15Q13.1) WILD-TYPE | 250 | 228 | 101 |
Figure S398. Get High-res Image Gene #55: 'Del Peak 28(15q13.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D55V10.png)
P value = 1.6e-16 (Chi-square test), Q value = 8.6e-14
Table S399. Gene #56: 'Del Peak 29(16q24.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
DEL PEAK 29(16Q24.3) CNV | 86 | 26 | 18 | 26 | 45 | 13 | 88 | 34 |
DEL PEAK 29(16Q24.3) WILD-TYPE | 38 | 10 | 5 | 69 | 27 | 7 | 15 | 6 |
Figure S399. Get High-res Image Gene #56: 'Del Peak 29(16q24.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D56V1.png)
P value = 2.51e-14 (Fisher's exact test), Q value = 1.3e-11
Table S400. Gene #56: 'Del Peak 29(16q24.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 125 | 248 |
DEL PEAK 29(16Q24.3) CNV | 110 | 45 | 181 |
DEL PEAK 29(16Q24.3) WILD-TYPE | 30 | 80 | 67 |
Figure S400. Get High-res Image Gene #56: 'Del Peak 29(16q24.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D56V2.png)
P value = 1.66e-14 (Chi-square test), Q value = 8.3e-12
Table S401. Gene #56: 'Del Peak 29(16q24.3)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
DEL PEAK 29(16Q24.3) CNV | 244 | 153 | 59 | 93 | 38 |
DEL PEAK 29(16Q24.3) WILD-TYPE | 103 | 69 | 13 | 130 | 11 |
Figure S401. Get High-res Image Gene #56: 'Del Peak 29(16q24.3)' versus Molecular Subtype #3: 'CN_CNMF'
![](D56V3.png)
P value = 4.47e-13 (Chi-square test), Q value = 2.1e-10
Table S402. Gene #56: 'Del Peak 29(16q24.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
DEL PEAK 29(16Q24.3) CNV | 37 | 115 | 72 | 83 | 19 | 57 |
DEL PEAK 29(16Q24.3) WILD-TYPE | 64 | 24 | 21 | 54 | 21 | 40 |
Figure S402. Get High-res Image Gene #56: 'Del Peak 29(16q24.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D56V4.png)
P value = 1.14e-09 (Fisher's exact test), Q value = 4.6e-07
Table S403. Gene #56: 'Del Peak 29(16q24.3)' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 147 | 133 | 117 |
DEL PEAK 29(16Q24.3) CNV | 63 | 103 | 84 |
DEL PEAK 29(16Q24.3) WILD-TYPE | 84 | 30 | 33 |
Figure S403. Get High-res Image Gene #56: 'Del Peak 29(16q24.3)' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D56V5.png)
P value = 3.45e-11 (Fisher's exact test), Q value = 1.5e-08
Table S404. Gene #56: 'Del Peak 29(16q24.3)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 161 | 110 | 126 |
DEL PEAK 29(16Q24.3) CNV | 119 | 83 | 48 |
DEL PEAK 29(16Q24.3) WILD-TYPE | 42 | 27 | 78 |
Figure S404. Get High-res Image Gene #56: 'Del Peak 29(16q24.3)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D56V6.png)
P value = 2.82e-16 (Fisher's exact test), Q value = 1.5e-13
Table S405. Gene #56: 'Del Peak 29(16q24.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
DEL PEAK 29(16Q24.3) CNV | 99 | 115 | 322 |
DEL PEAK 29(16Q24.3) WILD-TYPE | 135 | 33 | 124 |
Figure S405. Get High-res Image Gene #56: 'Del Peak 29(16q24.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D56V7.png)
P value = 4.62e-21 (Fisher's exact test), Q value = 2.6e-18
Table S406. Gene #56: 'Del Peak 29(16q24.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
DEL PEAK 29(16Q24.3) CNV | 173 | 287 | 76 |
DEL PEAK 29(16Q24.3) WILD-TYPE | 43 | 121 | 128 |
Figure S406. Get High-res Image Gene #56: 'Del Peak 29(16q24.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D56V8.png)
P value = 9.22e-15 (Fisher's exact test), Q value = 4.7e-12
Table S407. Gene #56: 'Del Peak 29(16q24.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
DEL PEAK 29(16Q24.3) CNV | 168 | 288 | 112 |
DEL PEAK 29(16Q24.3) WILD-TYPE | 66 | 104 | 143 |
Figure S407. Get High-res Image Gene #56: 'Del Peak 29(16q24.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D56V9.png)
P value = 8.49e-22 (Fisher's exact test), Q value = 4.9e-19
Table S408. Gene #56: 'Del Peak 29(16q24.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
DEL PEAK 29(16Q24.3) CNV | 239 | 233 | 96 |
DEL PEAK 29(16Q24.3) WILD-TYPE | 123 | 51 | 139 |
Figure S408. Get High-res Image Gene #56: 'Del Peak 29(16q24.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D56V10.png)
P value = 2.14e-10 (Chi-square test), Q value = 9e-08
Table S409. Gene #57: 'Del Peak 30(17p12)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
DEL PEAK 30(17P12) CNV | 80 | 27 | 14 | 60 | 60 | 15 | 32 | 24 |
DEL PEAK 30(17P12) WILD-TYPE | 44 | 9 | 9 | 35 | 12 | 5 | 71 | 16 |
Figure S409. Get High-res Image Gene #57: 'Del Peak 30(17p12)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D57V1.png)
P value = 9.33e-23 (Chi-square test), Q value = 5.5e-20
Table S410. Gene #57: 'Del Peak 30(17p12)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
DEL PEAK 30(17P12) CNV | 142 | 170 | 35 | 172 | 27 |
DEL PEAK 30(17P12) WILD-TYPE | 205 | 52 | 37 | 51 | 22 |
Figure S410. Get High-res Image Gene #57: 'Del Peak 30(17p12)' versus Molecular Subtype #3: 'CN_CNMF'
![](D57V3.png)
P value = 7.4e-07 (Chi-square test), Q value = 0.00024
Table S411. Gene #57: 'Del Peak 30(17p12)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
DEL PEAK 30(17P12) CNV | 61 | 62 | 64 | 103 | 21 | 46 |
DEL PEAK 30(17P12) WILD-TYPE | 40 | 77 | 29 | 34 | 19 | 51 |
Figure S411. Get High-res Image Gene #57: 'Del Peak 30(17p12)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D57V4.png)
P value = 8.07e-05 (Fisher's exact test), Q value = 0.019
Table S412. Gene #57: 'Del Peak 30(17p12)' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 147 | 133 | 117 |
DEL PEAK 30(17P12) CNV | 109 | 67 | 65 |
DEL PEAK 30(17P12) WILD-TYPE | 38 | 66 | 52 |
Figure S412. Get High-res Image Gene #57: 'Del Peak 30(17p12)' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D57V5.png)
P value = 0.000586 (Fisher's exact test), Q value = 0.11
Table S413. Gene #57: 'Del Peak 30(17p12)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
DEL PEAK 30(17P12) CNV | 166 | 83 | 253 |
DEL PEAK 30(17P12) WILD-TYPE | 68 | 65 | 193 |
Figure S413. Get High-res Image Gene #57: 'Del Peak 30(17p12)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D57V7.png)
P value = 0.000255 (Fisher's exact test), Q value = 0.054
Table S414. Gene #57: 'Del Peak 30(17p12)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
DEL PEAK 30(17P12) CNV | 133 | 220 | 181 |
DEL PEAK 30(17P12) WILD-TYPE | 101 | 172 | 74 |
Figure S414. Get High-res Image Gene #57: 'Del Peak 30(17p12)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D57V9.png)
P value = 0.000127 (Fisher's exact test), Q value = 0.029
Table S415. Gene #57: 'Del Peak 30(17p12)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
DEL PEAK 30(17P12) CNV | 219 | 149 | 166 |
DEL PEAK 30(17P12) WILD-TYPE | 143 | 135 | 69 |
Figure S415. Get High-res Image Gene #57: 'Del Peak 30(17p12)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D57V10.png)
P value = 1.07e-14 (Chi-square test), Q value = 5.4e-12
Table S416. Gene #58: 'Del Peak 31(17q21.31)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
DEL PEAK 31(17Q21.31) CNV | 29 | 16 | 7 | 50 | 50 | 9 | 13 | 16 |
DEL PEAK 31(17Q21.31) WILD-TYPE | 95 | 20 | 16 | 45 | 22 | 11 | 90 | 24 |
Figure S416. Get High-res Image Gene #58: 'Del Peak 31(17q21.31)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D58V1.png)
P value = 3.91e-07 (Fisher's exact test), Q value = 0.00013
Table S417. Gene #58: 'Del Peak 31(17q21.31)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 125 | 248 |
DEL PEAK 31(17Q21.31) CNV | 45 | 72 | 73 |
DEL PEAK 31(17Q21.31) WILD-TYPE | 95 | 53 | 175 |
Figure S417. Get High-res Image Gene #58: 'Del Peak 31(17q21.31)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D58V2.png)
P value = 5.42e-22 (Chi-square test), Q value = 3.2e-19
Table S418. Gene #58: 'Del Peak 31(17q21.31)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
DEL PEAK 31(17Q21.31) CNV | 79 | 69 | 18 | 139 | 10 |
DEL PEAK 31(17Q21.31) WILD-TYPE | 268 | 153 | 54 | 84 | 39 |
Figure S418. Get High-res Image Gene #58: 'Del Peak 31(17q21.31)' versus Molecular Subtype #3: 'CN_CNMF'
![](D58V3.png)
P value = 1.19e-11 (Chi-square test), Q value = 5.3e-09
Table S419. Gene #58: 'Del Peak 31(17q21.31)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
DEL PEAK 31(17Q21.31) CNV | 60 | 19 | 36 | 39 | 11 | 28 |
DEL PEAK 31(17Q21.31) WILD-TYPE | 41 | 120 | 57 | 98 | 29 | 69 |
Figure S419. Get High-res Image Gene #58: 'Del Peak 31(17q21.31)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D58V4.png)
P value = 1.86e-11 (Fisher's exact test), Q value = 8.2e-09
Table S420. Gene #58: 'Del Peak 31(17q21.31)' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 147 | 133 | 117 |
DEL PEAK 31(17Q21.31) CNV | 87 | 25 | 44 |
DEL PEAK 31(17Q21.31) WILD-TYPE | 60 | 108 | 73 |
Figure S420. Get High-res Image Gene #58: 'Del Peak 31(17q21.31)' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D58V5.png)
P value = 3.12e-11 (Fisher's exact test), Q value = 1.4e-08
Table S421. Gene #58: 'Del Peak 31(17q21.31)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 161 | 110 | 126 |
DEL PEAK 31(17Q21.31) CNV | 42 | 33 | 81 |
DEL PEAK 31(17Q21.31) WILD-TYPE | 119 | 77 | 45 |
Figure S421. Get High-res Image Gene #58: 'Del Peak 31(17q21.31)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D58V6.png)
P value = 2.86e-21 (Fisher's exact test), Q value = 1.6e-18
Table S422. Gene #58: 'Del Peak 31(17q21.31)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
DEL PEAK 31(17Q21.31) CNV | 144 | 41 | 109 |
DEL PEAK 31(17Q21.31) WILD-TYPE | 90 | 107 | 337 |
Figure S422. Get High-res Image Gene #58: 'Del Peak 31(17q21.31)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D58V7.png)
P value = 8.32e-17 (Fisher's exact test), Q value = 4.5e-14
Table S423. Gene #58: 'Del Peak 31(17q21.31)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
DEL PEAK 31(17Q21.31) CNV | 64 | 106 | 124 |
DEL PEAK 31(17Q21.31) WILD-TYPE | 152 | 302 | 80 |
Figure S423. Get High-res Image Gene #58: 'Del Peak 31(17q21.31)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D58V8.png)
P value = 1.14e-12 (Fisher's exact test), Q value = 5.3e-10
Table S424. Gene #58: 'Del Peak 31(17q21.31)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
DEL PEAK 31(17Q21.31) CNV | 69 | 102 | 137 |
DEL PEAK 31(17Q21.31) WILD-TYPE | 165 | 290 | 118 |
Figure S424. Get High-res Image Gene #58: 'Del Peak 31(17q21.31)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D58V9.png)
P value = 1.76e-11 (Fisher's exact test), Q value = 7.8e-09
Table S425. Gene #58: 'Del Peak 31(17q21.31)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
DEL PEAK 31(17Q21.31) CNV | 110 | 72 | 126 |
DEL PEAK 31(17Q21.31) WILD-TYPE | 252 | 212 | 109 |
Figure S425. Get High-res Image Gene #58: 'Del Peak 31(17q21.31)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D58V10.png)
P value = 0.000347 (Chi-square test), Q value = 0.071
Table S426. Gene #59: 'Del Peak 32(18q23)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
DEL PEAK 32(18Q23) CNV | 40 | 13 | 4 | 36 | 37 | 6 | 19 | 9 |
DEL PEAK 32(18Q23) WILD-TYPE | 84 | 23 | 19 | 59 | 35 | 14 | 84 | 31 |
Figure S426. Get High-res Image Gene #59: 'Del Peak 32(18q23)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D59V1.png)
P value = 1.32e-15 (Chi-square test), Q value = 7e-13
Table S427. Gene #59: 'Del Peak 32(18q23)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
DEL PEAK 32(18Q23) CNV | 58 | 84 | 28 | 111 | 12 |
DEL PEAK 32(18Q23) WILD-TYPE | 289 | 138 | 44 | 112 | 37 |
Figure S427. Get High-res Image Gene #59: 'Del Peak 32(18q23)' versus Molecular Subtype #3: 'CN_CNMF'
![](D59V3.png)
P value = 1.2e-08 (Chi-square test), Q value = 4.6e-06
Table S428. Gene #59: 'Del Peak 32(18q23)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
DEL PEAK 32(18Q23) CNV | 40 | 25 | 47 | 59 | 9 | 19 |
DEL PEAK 32(18Q23) WILD-TYPE | 61 | 114 | 46 | 78 | 31 | 78 |
Figure S428. Get High-res Image Gene #59: 'Del Peak 32(18q23)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D59V4.png)
P value = 2.54e-05 (Fisher's exact test), Q value = 0.0066
Table S429. Gene #59: 'Del Peak 32(18q23)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
DEL PEAK 32(18Q23) CNV | 102 | 33 | 134 |
DEL PEAK 32(18Q23) WILD-TYPE | 132 | 115 | 312 |
Figure S429. Get High-res Image Gene #59: 'Del Peak 32(18q23)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D59V7.png)
P value = 0.000375 (Fisher's exact test), Q value = 0.076
Table S430. Gene #59: 'Del Peak 32(18q23)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
DEL PEAK 32(18Q23) CNV | 60 | 120 | 107 |
DEL PEAK 32(18Q23) WILD-TYPE | 174 | 272 | 148 |
Figure S430. Get High-res Image Gene #59: 'Del Peak 32(18q23)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D59V9.png)
P value = 0.000143 (Fisher's exact test), Q value = 0.032
Table S431. Gene #59: 'Del Peak 32(18q23)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
DEL PEAK 32(18Q23) CNV | 113 | 73 | 101 |
DEL PEAK 32(18Q23) WILD-TYPE | 249 | 211 | 134 |
Figure S431. Get High-res Image Gene #59: 'Del Peak 32(18q23)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D59V10.png)
P value = 5.99e-11 (Chi-square test), Q value = 2.6e-08
Table S432. Gene #60: 'Del Peak 33(19p13.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
DEL PEAK 33(19P13.3) CNV | 53 | 11 | 6 | 53 | 37 | 6 | 12 | 6 |
DEL PEAK 33(19P13.3) WILD-TYPE | 71 | 25 | 17 | 42 | 35 | 14 | 91 | 34 |
Figure S432. Get High-res Image Gene #60: 'Del Peak 33(19p13.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D60V1.png)
P value = 4.57e-08 (Fisher's exact test), Q value = 1.7e-05
Table S433. Gene #60: 'Del Peak 33(19p13.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 125 | 248 |
DEL PEAK 33(19P13.3) CNV | 26 | 65 | 93 |
DEL PEAK 33(19P13.3) WILD-TYPE | 114 | 60 | 155 |
Figure S433. Get High-res Image Gene #60: 'Del Peak 33(19p13.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D60V2.png)
P value = 1.25e-44 (Chi-square test), Q value = 7.9e-42
Table S434. Gene #60: 'Del Peak 33(19p13.3)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
DEL PEAK 33(19P13.3) CNV | 30 | 112 | 11 | 136 | 16 |
DEL PEAK 33(19P13.3) WILD-TYPE | 317 | 110 | 61 | 87 | 33 |
Figure S434. Get High-res Image Gene #60: 'Del Peak 33(19p13.3)' versus Molecular Subtype #3: 'CN_CNMF'
![](D60V3.png)
P value = 6.53e-18 (Chi-square test), Q value = 3.6e-15
Table S435. Gene #60: 'Del Peak 33(19p13.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
DEL PEAK 33(19P13.3) CNV | 52 | 9 | 22 | 67 | 6 | 24 |
DEL PEAK 33(19P13.3) WILD-TYPE | 49 | 130 | 71 | 70 | 34 | 73 |
Figure S435. Get High-res Image Gene #60: 'Del Peak 33(19p13.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D60V4.png)
P value = 3.03e-06 (Fisher's exact test), Q value = 0.00089
Table S436. Gene #60: 'Del Peak 33(19p13.3)' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 147 | 133 | 117 |
DEL PEAK 33(19P13.3) CNV | 79 | 40 | 31 |
DEL PEAK 33(19P13.3) WILD-TYPE | 68 | 93 | 86 |
Figure S436. Get High-res Image Gene #60: 'Del Peak 33(19p13.3)' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D60V5.png)
P value = 3.39e-05 (Fisher's exact test), Q value = 0.0086
Table S437. Gene #60: 'Del Peak 33(19p13.3)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 161 | 110 | 126 |
DEL PEAK 33(19P13.3) CNV | 51 | 31 | 68 |
DEL PEAK 33(19P13.3) WILD-TYPE | 110 | 79 | 58 |
Figure S437. Get High-res Image Gene #60: 'Del Peak 33(19p13.3)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D60V6.png)
P value = 1.19e-12 (Fisher's exact test), Q value = 5.5e-10
Table S438. Gene #60: 'Del Peak 33(19p13.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
DEL PEAK 33(19P13.3) CNV | 121 | 24 | 142 |
DEL PEAK 33(19P13.3) WILD-TYPE | 113 | 124 | 304 |
Figure S438. Get High-res Image Gene #60: 'Del Peak 33(19p13.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D60V7.png)
P value = 5.4e-10 (Fisher's exact test), Q value = 2.2e-07
Table S439. Gene #60: 'Del Peak 33(19p13.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
DEL PEAK 33(19P13.3) CNV | 43 | 142 | 102 |
DEL PEAK 33(19P13.3) WILD-TYPE | 173 | 266 | 102 |
Figure S439. Get High-res Image Gene #60: 'Del Peak 33(19p13.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D60V8.png)
P value = 9.67e-16 (Fisher's exact test), Q value = 5.1e-13
Table S440. Gene #60: 'Del Peak 33(19p13.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
DEL PEAK 33(19P13.3) CNV | 47 | 111 | 137 |
DEL PEAK 33(19P13.3) WILD-TYPE | 187 | 281 | 118 |
Figure S440. Get High-res Image Gene #60: 'Del Peak 33(19p13.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D60V9.png)
P value = 6.54e-17 (Fisher's exact test), Q value = 3.5e-14
Table S441. Gene #60: 'Del Peak 33(19p13.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
DEL PEAK 33(19P13.3) CNV | 124 | 48 | 123 |
DEL PEAK 33(19P13.3) WILD-TYPE | 238 | 236 | 112 |
Figure S441. Get High-res Image Gene #60: 'Del Peak 33(19p13.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D60V10.png)
P value = 1.57e-06 (Chi-square test), Q value = 0.00048
Table S442. Gene #61: 'Del Peak 34(19q13.32)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
DEL PEAK 34(19Q13.32) CNV | 24 | 7 | 3 | 23 | 29 | 1 | 7 | 3 |
DEL PEAK 34(19Q13.32) WILD-TYPE | 100 | 29 | 20 | 72 | 43 | 19 | 96 | 37 |
Figure S442. Get High-res Image Gene #61: 'Del Peak 34(19q13.32)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D61V1.png)
P value = 8.8e-05 (Fisher's exact test), Q value = 0.021
Table S443. Gene #61: 'Del Peak 34(19q13.32)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 125 | 248 |
DEL PEAK 34(19Q13.32) CNV | 12 | 36 | 49 |
DEL PEAK 34(19Q13.32) WILD-TYPE | 128 | 89 | 199 |
Figure S443. Get High-res Image Gene #61: 'Del Peak 34(19q13.32)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D61V2.png)
P value = 4.48e-20 (Chi-square test), Q value = 2.6e-17
Table S444. Gene #61: 'Del Peak 34(19q13.32)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
DEL PEAK 34(19Q13.32) CNV | 22 | 68 | 5 | 79 | 9 |
DEL PEAK 34(19Q13.32) WILD-TYPE | 325 | 154 | 67 | 144 | 40 |
Figure S444. Get High-res Image Gene #61: 'Del Peak 34(19q13.32)' versus Molecular Subtype #3: 'CN_CNMF'
![](D61V3.png)
P value = 1.52e-10 (Chi-square test), Q value = 6.4e-08
Table S445. Gene #61: 'Del Peak 34(19q13.32)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
DEL PEAK 34(19Q13.32) CNV | 37 | 6 | 19 | 43 | 5 | 12 |
DEL PEAK 34(19Q13.32) WILD-TYPE | 64 | 133 | 74 | 94 | 35 | 85 |
Figure S445. Get High-res Image Gene #61: 'Del Peak 34(19q13.32)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D61V4.png)
P value = 0.000783 (Fisher's exact test), Q value = 0.14
Table S446. Gene #61: 'Del Peak 34(19q13.32)' versus Molecular Subtype #5: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 147 | 133 | 117 |
DEL PEAK 34(19Q13.32) CNV | 44 | 20 | 15 |
DEL PEAK 34(19Q13.32) WILD-TYPE | 103 | 113 | 102 |
Figure S446. Get High-res Image Gene #61: 'Del Peak 34(19q13.32)' versus Molecular Subtype #5: 'RPPA_CNMF'
![](D61V5.png)
P value = 4.95e-05 (Fisher's exact test), Q value = 0.012
Table S447. Gene #61: 'Del Peak 34(19q13.32)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 161 | 110 | 126 |
DEL PEAK 34(19Q13.32) CNV | 27 | 11 | 41 |
DEL PEAK 34(19Q13.32) WILD-TYPE | 134 | 99 | 85 |
Figure S447. Get High-res Image Gene #61: 'Del Peak 34(19q13.32)' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'
![](D61V6.png)
P value = 5.28e-09 (Fisher's exact test), Q value = 2.1e-06
Table S448. Gene #61: 'Del Peak 34(19q13.32)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
DEL PEAK 34(19Q13.32) CNV | 79 | 13 | 82 |
DEL PEAK 34(19Q13.32) WILD-TYPE | 155 | 135 | 364 |
Figure S448. Get High-res Image Gene #61: 'Del Peak 34(19q13.32)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D61V7.png)
P value = 6.75e-09 (Fisher's exact test), Q value = 2.6e-06
Table S449. Gene #61: 'Del Peak 34(19q13.32)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
DEL PEAK 34(19Q13.32) CNV | 19 | 89 | 66 |
DEL PEAK 34(19Q13.32) WILD-TYPE | 197 | 319 | 138 |
Figure S449. Get High-res Image Gene #61: 'Del Peak 34(19q13.32)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D61V8.png)
P value = 3.6e-10 (Fisher's exact test), Q value = 1.5e-07
Table S450. Gene #61: 'Del Peak 34(19q13.32)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
DEL PEAK 34(19Q13.32) CNV | 24 | 66 | 85 |
DEL PEAK 34(19Q13.32) WILD-TYPE | 210 | 326 | 170 |
Figure S450. Get High-res Image Gene #61: 'Del Peak 34(19q13.32)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D61V9.png)
P value = 5.78e-12 (Fisher's exact test), Q value = 2.6e-09
Table S451. Gene #61: 'Del Peak 34(19q13.32)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
DEL PEAK 34(19Q13.32) CNV | 78 | 22 | 75 |
DEL PEAK 34(19Q13.32) WILD-TYPE | 284 | 262 | 160 |
Figure S451. Get High-res Image Gene #61: 'Del Peak 34(19q13.32)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D61V10.png)
P value = 8.81e-06 (Chi-square test), Q value = 0.0024
Table S452. Gene #62: 'Del Peak 35(20p13)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
DEL PEAK 35(20P13) CNV | 28 | 3 | 1 | 24 | 16 | 3 | 3 | 1 |
DEL PEAK 35(20P13) WILD-TYPE | 96 | 33 | 22 | 71 | 56 | 17 | 100 | 39 |
Figure S452. Get High-res Image Gene #62: 'Del Peak 35(20p13)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D62V1.png)
P value = 0.000158 (Fisher's exact test), Q value = 0.035
Table S453. Gene #62: 'Del Peak 35(20p13)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 125 | 248 |
DEL PEAK 35(20P13) CNV | 10 | 32 | 37 |
DEL PEAK 35(20P13) WILD-TYPE | 130 | 93 | 211 |
Figure S453. Get High-res Image Gene #62: 'Del Peak 35(20p13)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D62V2.png)
P value = 2.59e-13 (Chi-square test), Q value = 1.2e-10
Table S454. Gene #62: 'Del Peak 35(20p13)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
DEL PEAK 35(20P13) CNV | 18 | 36 | 5 | 61 | 14 |
DEL PEAK 35(20P13) WILD-TYPE | 329 | 186 | 67 | 162 | 35 |
Figure S454. Get High-res Image Gene #62: 'Del Peak 35(20p13)' versus Molecular Subtype #3: 'CN_CNMF'
![](D62V3.png)
P value = 7.15e-09 (Chi-square test), Q value = 2.8e-06
Table S455. Gene #62: 'Del Peak 35(20p13)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
DEL PEAK 35(20P13) CNV | 31 | 4 | 11 | 24 | 3 | 7 |
DEL PEAK 35(20P13) WILD-TYPE | 70 | 135 | 82 | 113 | 37 | 90 |
Figure S455. Get High-res Image Gene #62: 'Del Peak 35(20p13)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D62V4.png)
P value = 2.44e-10 (Fisher's exact test), Q value = 1e-07
Table S456. Gene #62: 'Del Peak 35(20p13)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 148 | 446 |
DEL PEAK 35(20P13) CNV | 64 | 6 | 55 |
DEL PEAK 35(20P13) WILD-TYPE | 170 | 142 | 391 |
Figure S456. Get High-res Image Gene #62: 'Del Peak 35(20p13)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
![](D62V7.png)
P value = 7.06e-10 (Fisher's exact test), Q value = 2.9e-07
Table S457. Gene #62: 'Del Peak 35(20p13)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 216 | 408 | 204 |
DEL PEAK 35(20P13) CNV | 11 | 58 | 56 |
DEL PEAK 35(20P13) WILD-TYPE | 205 | 350 | 148 |
Figure S457. Get High-res Image Gene #62: 'Del Peak 35(20p13)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
![](D62V8.png)
P value = 2.69e-12 (Fisher's exact test), Q value = 1.2e-09
Table S458. Gene #62: 'Del Peak 35(20p13)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 392 | 255 |
DEL PEAK 35(20P13) CNV | 15 | 40 | 72 |
DEL PEAK 35(20P13) WILD-TYPE | 219 | 352 | 183 |
Figure S458. Get High-res Image Gene #62: 'Del Peak 35(20p13)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
![](D62V9.png)
P value = 1.91e-13 (Fisher's exact test), Q value = 9.2e-11
Table S459. Gene #62: 'Del Peak 35(20p13)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 362 | 284 | 235 |
DEL PEAK 35(20P13) CNV | 48 | 13 | 66 |
DEL PEAK 35(20P13) WILD-TYPE | 314 | 271 | 169 |
Figure S459. Get High-res Image Gene #62: 'Del Peak 35(20p13)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
![](D62V10.png)
P value = 0.000252 (Chi-square test), Q value = 0.054
Table S460. Gene #63: 'Del Peak 36(21q11.2)' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 124 | 36 | 23 | 95 | 72 | 20 | 103 | 40 |
DEL PEAK 36(21Q11.2) CNV | 38 | 11 | 4 | 15 | 22 | 3 | 10 | 3 |
DEL PEAK 36(21Q11.2) WILD-TYPE | 86 | 25 | 19 | 80 | 50 | 17 | 93 | 37 |
Figure S460. Get High-res Image Gene #63: 'Del Peak 36(21q11.2)' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D63V1.png)
P value = 4.31e-11 (Chi-square test), Q value = 1.9e-08
Table S461. Gene #63: 'Del Peak 36(21q11.2)' versus Molecular Subtype #3: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 347 | 222 | 72 | 223 | 49 |
DEL PEAK 36(21Q11.2) CNV | 28 | 66 | 13 | 63 | 12 |
DEL PEAK 36(21Q11.2) WILD-TYPE | 319 | 156 | 59 | 160 | 37 |
Figure S461. Get High-res Image Gene #63: 'Del Peak 36(21q11.2)' versus Molecular Subtype #3: 'CN_CNMF'
![](D63V3.png)
P value = 2.01e-06 (Chi-square test), Q value = 6e-04
Table S462. Gene #63: 'Del Peak 36(21q11.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
DEL PEAK 36(21Q11.2) CNV | 17 | 16 | 18 | 48 | 7 | 9 |
DEL PEAK 36(21Q11.2) WILD-TYPE | 84 | 123 | 75 | 89 | 33 | 88 |
Figure S462. Get High-res Image Gene #63: 'Del Peak 36(21q11.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D63V4.png)
P value = 0.000674 (Chi-square test), Q value = 0.13
Table S463. Gene #64: 'Del Peak 37(22q13.32)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 101 | 139 | 93 | 137 | 40 | 97 |
DEL PEAK 37(22Q13.32) CNV | 49 | 52 | 42 | 79 | 10 | 36 |
DEL PEAK 37(22Q13.32) WILD-TYPE | 52 | 87 | 51 | 58 | 30 | 61 |
Figure S463. Get High-res Image Gene #64: 'Del Peak 37(22q13.32)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
![](D64V4.png)
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Copy number data file = All Lesions File (all_lesions.conf_##.txt, where ## is the confidence level). The all lesions file is from GISTIC pipeline and summarizes the results from the GISTIC run. It contains data about the significant regions of amplification and deletion as well as which samples are amplified or deleted in each of these regions. The identified regions are listed down the first column, and the samples are listed across the first row, starting in column 10.
-
Molecular subtype file = BRCA-TP.transferedmergedcluster.txt
-
Number of patients = 913
-
Number of copy number variation regions = 64
-
Number of molecular subtypes = 10
-
Exclude regions that fewer than K tumors have alterations, K = 3
For multi-class clinical features (nominal or ordinal), Chi-square tests (Greenwood and Nikulin 1996) were used to estimate the P values using the 'chisq.test' function in R
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
This is an experimental feature. The full results of the analysis summarized in this report can be downloaded from the TCGA Data Coordination Center.