Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	0 (0%)	92	0.41483	1	0.7641	1	0.27439	1	0.90393	1	0.98232	1	0.82758	1
1q gain	0 (0%)	78	0.020812	1	0.47865	1	0.34514	1	0.56753	1	0.25209	1	0.076438	1
2p gain	0 (0%)	109	0.083321	1	0.3032	1	0.10044	1	0.095149	1	0.27115	1	0.04409	1
2q gain	0 (0%)	121	0.084258	1	0.61135	1	0.069385	1	0.15266	1	1	1	0.63717	1
3p gain	0 (0%)	105	0.56809	1	0.6849	1	0.71731	1	0.036738	1	0.4831	1	1	1
3q gain	0 (0%)	64	1.3039e-05	0.0057	0.36176	1	0.019099	1	0.047802	1	0.053716	1	0.17675	1
4q gain	0 (0%)	123	0.11451	1	0.11046	1	0.45349	1	0.48498	1	0.48677	1	0.21598	1
5p gain	0 (0%)	85	0.020411	1	1	1	0.93487	1	0.72792	1	0.88101	1	0.30436	1
5q gain	0 (0%)	113	0.57215	1	0.39372	1	1	1	1	1	0.75884	1	0.52997	1
6p gain	0 (0%)	108	0.10815	1	0.0039931	1	0.026151	1	0.09872	1	0.18763	1	0.172	1
6q gain	0 (0%)	117	0.50097	1	0.0085213	1	0.053618	1	0.0060124	1	0.095305	1	0.021603	1
7p gain	0 (0%)	119	0.48042	1	0.1946	1	0.19845	1	0.41011	1	0.31563	1	0.10097	1
7q gain	0 (0%)	115	0.10891	1	0.33959	1	0.28492	1	1	1	0.48187	1	1	1
8p gain	0 (0%)	116	0.64386	1	0.40951	1	0.11966	1	0.16718	1	0.38005	1	1	1
8q gain	0 (0%)	104	0.034911	1	0.025308	1	0.10374	1	0.38262	1	0.10448	1	0.21035	1
9p gain	0 (0%)	114	0.32035	1	0.7479	1	0.47013	1	0.014762	1	0.41179	1	0.50876	1
9q gain	0 (0%)	115	0.66888	1	0.23944	1	0.43442	1	0.036138	1	0.1283	1	1	1
10p gain	0 (0%)	118	0.65341	1	0.90138	1	0.88327	1	0.725	1	0.15559	1	1	1
10q gain	0 (0%)	122	0.45652	1	0.56753	1	0.80978	1	0.14527	1	0.32998	1	0.58338	1
12p gain	0 (0%)	112	0.010278	1	0.41817	1	0.38518	1	0.003215	1	0.37755	1	0.35421	1
12q gain	0 (0%)	116	0.021347	1	0.84088	1	0.63694	1	0.051459	1	0.24383	1	1	1
13q gain	0 (0%)	120	0.039702	1	0.49122	1	0.16768	1	0.488	1	0.88046	1	0.36489	1
14q gain	0 (0%)	116	0.30504	1	1	1	0.20122	1	0.12408	1	0.40182	1	0.48748	1
15q gain	0 (0%)	113	0.0018421	0.787	1	1	0.31338	1	0.79425	1	0.84391	1	1	1
16p gain	0 (0%)	112	0.045563	1	0.17141	1	0.5061	1	0.061451	1	0.53252	1	0.12068	1
16q gain	0 (0%)	116	0.91999	1	0.54614	1	0.36371	1	0.012239	1	0.40182	1	0.48748	1
17p gain	0 (0%)	121	0.61568	1	0.21352	1	0.26939	1	0.012639	1	0.42282	1	0.028653	1
17q gain	0 (0%)	113	0.015669	1	0.013148	1	0.025318	1	0.014803	1	0.39439	1	0.020812	1
18p gain	0 (0%)	114	0.4077	1	0.69199	1	0.60585	1	0.02714	1	0.23973	1	0.3451	1
18q gain	0 (0%)	119	0.075675	1	1	1	0.48553	1	0.0083231	1	0.39129	1	1	1
19p gain	0 (0%)	118	0.53027	1	0.72701	1	0.54679	1	0.33064	1	0.55846	1	1	1
19q gain	0 (0%)	103	0.21842	1	0.67192	1	0.40858	1	0.030908	1	0.12632	1	0.13751	1
20p gain	0 (0%)	94	0.00068852	0.297	0.47814	1	0.85589	1	0.082957	1	0.94629	1	0.18046	1
20q gain	0 (0%)	88	0.00053386	0.231	0.36167	1	0.51214	1	0.16696	1	0.63184	1	0.14462	1
21q gain	0 (0%)	112	0.55557	1	0.93808	1	0.2655	1	0.9045	1	0.33167	1	0.75823	1
22q gain	0 (0%)	118	0.040304	1	0.90138	1	0.32574	1	0.0037652	1	0.313	1	1	1
Xq gain	0 (0%)	120	0.43502	1	0.19933	1	0.76251	1	0.33197	1	0.30533	1	0.36489	1
1q loss	0 (0%)	123	0.26164	1	0.78637	1	1	1	0.48498	1	0.8387	1	1	1
2p loss	0 (0%)	123	0.11451	1	0.18243	1	0.25061	1	0.67281	1	0.73606	1	0.55311	1
2q loss	0 (0%)	121	0.084258	1	0.029484	1	0.085916	1	0.26668	1	0.72289	1	1	1
3p loss	0 (0%)	99	0.31977	1	0.0016044	0.687	0.19767	1	0.00043636	0.19	0.028381	1	0.0037997	1
4p loss	0 (0%)	85	0.0018581	0.792	0.045913	1	0.27851	1	0.95615	1	0.35085	1	0.21454	1
4q loss	0 (0%)	102	6.3952e-06	0.0028	0.77329	1	0.097593	1	0.29677	1	0.62749	1	1	1
5p loss	0 (0%)	123	0.34629	1	0.78637	1	0.79037	1	1	1	0.35571	1	1	1
5q loss	0 (0%)	106	0.031649	1	0.053472	1	0.52697	1	0.034512	1	0.078829	1	0.0068615	1
6p loss	0 (0%)	114	0.92589	1	0.053573	1	0.38445	1	0.43213	1	0.72514	1	1	1
6q loss	0 (0%)	103	0.20811	1	0.58678	1	0.28714	1	0.77742	1	0.39451	1	1	1
7p loss	0 (0%)	120	0.062536	1	0.87519	1	0.55849	1	0.33197	1	0.77912	1	0.36489	1
7q loss	0 (0%)	113	0.012929	1	0.70726	1	0.035213	1	0.18813	1	0.10555	1	0.75299	1
8p loss	0 (0%)	99	0.43487	1	0.25881	1	0.4453	1	0.79514	1	0.80348	1	1	1
8q loss	0 (0%)	120	1	1	0.49122	1	0.3259	1	0.33197	1	0.35851	1	0.0669	1
9p loss	0 (0%)	114	0.32035	1	0.86362	1	0.74002	1	0.77555	1	0.97031	1	1	1
9q loss	0 (0%)	115	0.66888	1	0.288	1	0.014491	1	0.27457	1	0.36569	1	0.086442	1
10p loss	0 (0%)	104	0.015242	1	0.79503	1	0.13882	1	0.1025	1	0.76472	1	0.60954	1
10q loss	0 (0%)	102	0.012907	1	0.95754	1	0.79013	1	0.1808	1	0.47661	1	0.45947	1
11p loss	0 (0%)	99	0.08225	1	0.33229	1	0.87441	1	0.94092	1	0.782	1	0.64443	1
11q loss	0 (0%)	96	0.0096482	1	0.74839	1	0.77141	1	0.17719	1	0.95192	1	0.37279	1
12p loss	0 (0%)	107	0.0021794	0.926	0.20931	1	0.73874	1	0.72048	1	0.5889	1	0.17969	1
12q loss	0 (0%)	122	0.035589	1	0.45985	1	0.28599	1	0.2981	1	1	1	1	1
13q loss	0 (0%)	103	0.42999	1	0.034078	1	0.48922	1	0.065926	1	0.030058	1	0.2085	1
14q loss	0 (0%)	119	0.42417	1	0.14267	1	0.023362	1	0.0035534	1	0.19964	1	0.025784	1
15q loss	0 (0%)	118	0.0015747	0.676	1	1	0.31611	1	0.11609	1	0.7722	1	0.69665	1
16p loss	0 (0%)	118	0.41463	1	0.14442	1	0.12934	1	0.0063841	1	0.11741	1	0.24143	1
16q loss	0 (0%)	112	0.82052	1	0.023745	1	0.0010697	0.46	0.00052322	0.227	0.057399	1	0.0055376	1
17p loss	0 (0%)	99	0.014774	1	0.0044384	1	0.04114	1	0.059647	1	0.020215	1	0.017288	1
17q loss	0 (0%)	121	0.61568	1	0.029484	1	0.085916	1	0.26668	1	0.29605	1	0.32129	1
18p loss	0 (0%)	110	0.55016	1	0.46457	1	0.038908	1	0.098811	1	0.10032	1	0.081796	1
18q loss	0 (0%)	102	0.11208	1	0.021437	1	0.00042831	0.187	0.003342	1	0.013154	1	0.0066096	1
19p loss	0 (0%)	114	0.43984	1	0.37536	1	0.25835	1	0.39658	1	0.19033	1	0.50876	1
19q loss	0 (0%)	120	0.49514	1	0.56923	1	0.48553	1	0.17255	1	0.77912	1	0.36489	1
20p loss	0 (0%)	118	0.53027	1	0.41762	1	0.59555	1	0.37569	1	0.95508	1	0.69665	1
21q loss	0 (0%)	113	0.00097604	0.421	0.52971	1	0.85783	1	0.80978	1	0.32789	1	0.75299	1
22q loss	0 (0%)	113	0.86958	1	1	1	0.86723	1	0.51224	1	0.75884	1	1	1