Clustering of RPPA data: consensus hierarchical
Lung Squamous Cell Carcinoma (Primary solid tumor)
21 April 2013
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analyses__2013_04_21
Maintainer Information
Citation Information
Maintained by TCGA GDAC Team
(Broad Institute/MD Anderson Cancer Center/Harvard Medical School)
Cite as
Broad Institute TCGA Genome Data Analysis Center
(2013):
Lung Squamous Cell Carcinoma (Primary solid tumor cohort) - 21 April 2013: Clustering of RPPA data: consensus hierarchical.
Broad Institute of MIT and Harvard.
doi:10.7908/C1JQ0Z0V
Overview
Introduction
Summary
174 proteins were selected. Consensus average linkage hierarchical clustering of 195 samples and 174 proteins identified 4 subtypes with the stability of the clustering increasing for k = 2 to k = 8 and the average silhouette width calculation for selecting the robust clusters.
Results
Protein expression patterns of molecular subtypes
Consensus and correlation matrix
Silhouette widths
Samples assignment with silhouette width
Marker proteins of each subtype
Methods & Data
Copyright © 2013
Broad Institute TCGA GDAC as part of the TCGA Research Network.
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