Clustering of RPPA data: consensus hierarchical
Lung Squamous Cell Carcinoma (Primary solid tumor)
21 April 2013  |  analyses__2013_04_21
Maintainer Information
Citation Information
Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)
Cite as Broad Institute TCGA Genome Data Analysis Center (2013): Lung Squamous Cell Carcinoma (Primary solid tumor cohort) - 21 April 2013: Clustering of RPPA data: consensus hierarchical. Broad Institute of MIT and Harvard. doi:10.7908/C1JQ0Z0V
- Overview
+ Introduction
- Summary

174 proteins were selected. Consensus average linkage hierarchical clustering of 195 samples and 174 proteins identified 4 subtypes with the stability of the clustering increasing for k = 2 to k = 8 and the average silhouette width calculation for selecting the robust clusters.

- Results
+ Protein expression patterns of molecular subtypes
+ Consensus and correlation matrix
+ Silhouette widths
+ Samples assignment with silhouette width
+ Marker proteins of each subtype
+ Methods & Data