
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/Correlate_Clinical_Cnvsarms_onlysig/broadinstitute.org/cancer.genome.analysis/00498/20/CNV2ClinicalAnalysis_nozzle_onlysig_arm.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/Correlate_Clinical_Cnvsarms_onlysig/broadinstitute.org/cancer.genome.analysis/00498/20/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/cnvarms2cluster/BLCA-TP/3472512/broad_values_by_arm.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/BLCA-TP/3348537/BLCA-TP.clin.merged.picked.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=BLCA-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=BLCA-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=140, in cluster file=150, common to both=134
[1] "Reduce the number of clustering variables from 80 to 75."
[1]  75 134
[1] "1p gain"
[1] 3
      1P GAIN CNV 1P GAIN WILD-TYPE 
               16               118 
      1P GAIN CNV 1P GAIN WILD-TYPE 
               16               118 
[1] "1q gain"
[1] 3
      1Q GAIN CNV 1Q GAIN WILD-TYPE 
               31               103 
      1Q GAIN CNV 1Q GAIN WILD-TYPE 
               31               103 
[1] "2p gain"
[1] 3
      2P GAIN CNV 2P GAIN WILD-TYPE 
               27               107 
      2P GAIN CNV 2P GAIN WILD-TYPE 
               27               107 
[1] "2q gain"
[1] 3
      2Q GAIN CNV 2Q GAIN WILD-TYPE 
               10               124 
      2Q GAIN CNV 2Q GAIN WILD-TYPE 
               10               124 
[1] "3p gain"
[1] 3
      3P GAIN CNV 3P GAIN WILD-TYPE 
               28               106 
      3P GAIN CNV 3P GAIN WILD-TYPE 
               28               106 
[1] "3q gain"
[1] 3
      3Q GAIN CNV 3Q GAIN WILD-TYPE 
               39                95 
      3Q GAIN CNV 3Q GAIN WILD-TYPE 
               39                95 
[1] "4p gain"
[1] 3
      4P GAIN CNV 4P GAIN WILD-TYPE 
                8               126 
      4P GAIN CNV 4P GAIN WILD-TYPE 
                8               126 
[1] "4q gain"
[1] 3
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
                3               131 
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
                3               131 
[1] "5p gain"
[1] 3
      5P GAIN CNV 5P GAIN WILD-TYPE 
               39                95 
      5P GAIN CNV 5P GAIN WILD-TYPE 
               39                95 
[1] "5q gain"
[1] 3
      5Q GAIN CNV 5Q GAIN WILD-TYPE 
               17               117 
      5Q GAIN CNV 5Q GAIN WILD-TYPE 
               17               117 
[1] "6p gain"
[1] 3
      6P GAIN CNV 6P GAIN WILD-TYPE 
               10               124 
      6P GAIN CNV 6P GAIN WILD-TYPE 
               10               124 
[1] "6q gain"
[1] 3
      6Q GAIN CNV 6Q GAIN WILD-TYPE 
                5               129 
      6Q GAIN CNV 6Q GAIN WILD-TYPE 
                5               129 
[1] "7p gain"
[1] 3
      7P GAIN CNV 7P GAIN WILD-TYPE 
               40                94 
      7P GAIN CNV 7P GAIN WILD-TYPE 
               40                94 
[1] "7q gain"
[1] 3
      7Q GAIN CNV 7Q GAIN WILD-TYPE 
               36                98 
      7Q GAIN CNV 7Q GAIN WILD-TYPE 
               36                98 
[1] "8p gain"
[1] 3
      8P GAIN CNV 8P GAIN WILD-TYPE 
               15               119 
      8P GAIN CNV 8P GAIN WILD-TYPE 
               15               119 
[1] "8q gain"
[1] 3
      8Q GAIN CNV 8Q GAIN WILD-TYPE 
               41                93 
      8Q GAIN CNV 8Q GAIN WILD-TYPE 
               41                93 
[1] "9p gain"
[1] 3
      9P GAIN CNV 9P GAIN WILD-TYPE 
               13               121 
      9P GAIN CNV 9P GAIN WILD-TYPE 
               13               121 
[1] "9q gain"
[1] 3
      9Q GAIN CNV 9Q GAIN WILD-TYPE 
               12               122 
      9Q GAIN CNV 9Q GAIN WILD-TYPE 
               12               122 
[1] "10p gain"
[1] 3
      10P GAIN CNV 10P GAIN WILD-TYPE 
                25                109 
      10P GAIN CNV 10P GAIN WILD-TYPE 
                25                109 
[1] "10q gain"
[1] 3
      10Q GAIN CNV 10Q GAIN WILD-TYPE 
                 7                127 
      10Q GAIN CNV 10Q GAIN WILD-TYPE 
                 7                127 
[1] "11p gain"
[1] 3
      11P GAIN CNV 11P GAIN WILD-TYPE 
                 6                128 
      11P GAIN CNV 11P GAIN WILD-TYPE 
                 6                128 
[1] "11q gain"
[1] 3
      11Q GAIN CNV 11Q GAIN WILD-TYPE 
                 8                126 
      11Q GAIN CNV 11Q GAIN WILD-TYPE 
                 8                126 
[1] "12p gain"
[1] 3
      12P GAIN CNV 12P GAIN WILD-TYPE 
                25                109 
      12P GAIN CNV 12P GAIN WILD-TYPE 
                25                109 
[1] "12q gain"
[1] 3
      12Q GAIN CNV 12Q GAIN WILD-TYPE 
                18                116 
      12Q GAIN CNV 12Q GAIN WILD-TYPE 
                18                116 
[1] "13q gain"
[1] 3
      13Q GAIN CNV 13Q GAIN WILD-TYPE 
                22                112 
      13Q GAIN CNV 13Q GAIN WILD-TYPE 
                22                112 
[1] "14q gain"
[1] 3
      14Q GAIN CNV 14Q GAIN WILD-TYPE 
                11                123 
      14Q GAIN CNV 14Q GAIN WILD-TYPE 
                11                123 
[1] "15q gain"
[1] 3
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
                 4                130 
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
                 4                130 
[1] "16p gain"
[1] 3
      16P GAIN CNV 16P GAIN WILD-TYPE 
                 9                125 
      16P GAIN CNV 16P GAIN WILD-TYPE 
                 9                125 
[1] "16q gain"
[1] 3
      16Q GAIN CNV 16Q GAIN WILD-TYPE 
                12                122 
      16Q GAIN CNV 16Q GAIN WILD-TYPE 
                12                122 
[1] "17p gain"
[1] 3
      17P GAIN CNV 17P GAIN WILD-TYPE 
                 7                127 
      17P GAIN CNV 17P GAIN WILD-TYPE 
                 7                127 
[1] "17q gain"
[1] 3
      17Q GAIN CNV 17Q GAIN WILD-TYPE 
                23                111 
      17Q GAIN CNV 17Q GAIN WILD-TYPE 
                23                111 
[1] "18p gain"
[1] 3
      18P GAIN CNV 18P GAIN WILD-TYPE 
                22                112 
      18P GAIN CNV 18P GAIN WILD-TYPE 
                22                112 
[1] "18q gain"
[1] 3
      18Q GAIN CNV 18Q GAIN WILD-TYPE 
                 7                127 
      18Q GAIN CNV 18Q GAIN WILD-TYPE 
                 7                127 
[1] "19p gain"
[1] 3
      19P GAIN CNV 19P GAIN WILD-TYPE 
                11                123 
      19P GAIN CNV 19P GAIN WILD-TYPE 
                11                123 
[1] "19q gain"
[1] 3
      19Q GAIN CNV 19Q GAIN WILD-TYPE 
                25                109 
      19Q GAIN CNV 19Q GAIN WILD-TYPE 
                25                109 
[1] "20p gain"
[1] 3
      20P GAIN CNV 20P GAIN WILD-TYPE 
                50                 84 
      20P GAIN CNV 20P GAIN WILD-TYPE 
                50                 84 
[1] "20q gain"
[1] 3
      20Q GAIN CNV 20Q GAIN WILD-TYPE 
                55                 79 
      20Q GAIN CNV 20Q GAIN WILD-TYPE 
                55                 79 
[1] "21q gain"
[1] 3
      21Q GAIN CNV 21Q GAIN WILD-TYPE 
                26                108 
      21Q GAIN CNV 21Q GAIN WILD-TYPE 
                26                108 
[1] "22q gain"
[1] 3
      22Q GAIN CNV 22Q GAIN WILD-TYPE 
                11                123 
      22Q GAIN CNV 22Q GAIN WILD-TYPE 
                11                123 
[1] "Xq gain"
[1] 3
      XQ GAIN CNV XQ GAIN WILD-TYPE 
                6               128 
      XQ GAIN CNV XQ GAIN WILD-TYPE 
                6               128 
[1] "1p loss"
[1] 3
      1P LOSS CNV 1P LOSS WILD-TYPE 
                3               131 
      1P LOSS CNV 1P LOSS WILD-TYPE 
                3               131 
[1] "2p loss"
[1] 3
      2P LOSS CNV 2P LOSS WILD-TYPE 
                8               126 
      2P LOSS CNV 2P LOSS WILD-TYPE 
                8               126 
[1] "2q loss"
[1] 3
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
               16               118 
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
               16               118 
[1] "3p loss"
[1] 3
      3P LOSS CNV 3P LOSS WILD-TYPE 
                9               125 
      3P LOSS CNV 3P LOSS WILD-TYPE 
                9               125 
[1] "4p loss"
[1] 3
      4P LOSS CNV 4P LOSS WILD-TYPE 
               26               108 
      4P LOSS CNV 4P LOSS WILD-TYPE 
               26               108 
[1] "4q loss"
[1] 3
      4Q LOSS CNV 4Q LOSS WILD-TYPE 
               24               110 
      4Q LOSS CNV 4Q LOSS WILD-TYPE 
               24               110 
[1] "5p loss"
[1] 3
      5P LOSS CNV 5P LOSS WILD-TYPE 
               13               121 
      5P LOSS CNV 5P LOSS WILD-TYPE 
               13               121 
[1] "5q loss"
[1] 3
      5Q LOSS CNV 5Q LOSS WILD-TYPE 
               32               102 
      5Q LOSS CNV 5Q LOSS WILD-TYPE 
               32               102 
[1] "6p loss"
[1] 3
      6P LOSS CNV 6P LOSS WILD-TYPE 
               19               115 
      6P LOSS CNV 6P LOSS WILD-TYPE 
               19               115 
[1] "6q loss"
[1] 3
      6Q LOSS CNV 6Q LOSS WILD-TYPE 
               28               106 
      6Q LOSS CNV 6Q LOSS WILD-TYPE 
               28               106 
[1] "8p loss"
[1] 3
      8P LOSS CNV 8P LOSS WILD-TYPE 
               46                88 
      8P LOSS CNV 8P LOSS WILD-TYPE 
               46                88 
[1] "8q loss"
[1] 3
      8Q LOSS CNV 8Q LOSS WILD-TYPE 
                6               128 
      8Q LOSS CNV 8Q LOSS WILD-TYPE 
                6               128 
[1] "9p loss"
[1] 3
      9P LOSS CNV 9P LOSS WILD-TYPE 
               39                95 
      9P LOSS CNV 9P LOSS WILD-TYPE 
               39                95 
[1] "9q loss"
[1] 3
      9Q LOSS CNV 9Q LOSS WILD-TYPE 
               36                98 
      9Q LOSS CNV 9Q LOSS WILD-TYPE 
               36                98 
[1] "10p loss"
[1] 3
      10P LOSS CNV 10P LOSS WILD-TYPE 
                19                115 
      10P LOSS CNV 10P LOSS WILD-TYPE 
                19                115 
[1] "10q loss"
[1] 3
      10Q LOSS CNV 10Q LOSS WILD-TYPE 
                28                106 
      10Q LOSS CNV 10Q LOSS WILD-TYPE 
                28                106 
[1] "11p loss"
[1] 3
      11P LOSS CNV 11P LOSS WILD-TYPE 
                44                 90 
      11P LOSS CNV 11P LOSS WILD-TYPE 
                44                 90 
[1] "11q loss"
[1] 3
      11Q LOSS CNV 11Q LOSS WILD-TYPE 
                31                103 
      11Q LOSS CNV 11Q LOSS WILD-TYPE 
                31                103 
[1] "12p loss"
[1] 3
      12P LOSS CNV 12P LOSS WILD-TYPE 
                 5                129 
      12P LOSS CNV 12P LOSS WILD-TYPE 
                 5                129 
[1] "12q loss"
[1] 3
      12Q LOSS CNV 12Q LOSS WILD-TYPE 
                 6                128 
      12Q LOSS CNV 12Q LOSS WILD-TYPE 
                 6                128 
[1] "13q loss"
[1] 3
      13Q LOSS CNV 13Q LOSS WILD-TYPE 
                18                116 
      13Q LOSS CNV 13Q LOSS WILD-TYPE 
                18                116 
[1] "14q loss"
[1] 3
      14Q LOSS CNV 14Q LOSS WILD-TYPE 
                23                111 
      14Q LOSS CNV 14Q LOSS WILD-TYPE 
                23                111 
[1] "15q loss"
[1] 3
      15Q LOSS CNV 15Q LOSS WILD-TYPE 
                15                119 
      15Q LOSS CNV 15Q LOSS WILD-TYPE 
                15                119 
[1] "16p loss"
[1] 3
      16P LOSS CNV 16P LOSS WILD-TYPE 
                15                119 
      16P LOSS CNV 16P LOSS WILD-TYPE 
                15                119 
[1] "16q loss"
[1] 3
      16Q LOSS CNV 16Q LOSS WILD-TYPE 
                16                118 
      16Q LOSS CNV 16Q LOSS WILD-TYPE 
                16                118 
[1] "17p loss"
[1] 3
      17P LOSS CNV 17P LOSS WILD-TYPE 
                38                 96 
      17P LOSS CNV 17P LOSS WILD-TYPE 
                38                 96 
[1] "17q loss"
[1] 3
      17Q LOSS CNV 17Q LOSS WILD-TYPE 
                 6                128 
      17Q LOSS CNV 17Q LOSS WILD-TYPE 
                 6                128 
[1] "18p loss"
[1] 3
      18P LOSS CNV 18P LOSS WILD-TYPE 
                19                115 
      18P LOSS CNV 18P LOSS WILD-TYPE 
                19                115 
[1] "18q loss"
[1] 3
      18Q LOSS CNV 18Q LOSS WILD-TYPE 
                35                 99 
      18Q LOSS CNV 18Q LOSS WILD-TYPE 
                35                 99 
[1] "19p loss"
[1] 3
      19P LOSS CNV 19P LOSS WILD-TYPE 
                 9                125 
      19P LOSS CNV 19P LOSS WILD-TYPE 
                 9                125 
[1] "19q loss"
[1] 3
      19Q LOSS CNV 19Q LOSS WILD-TYPE 
                 4                130 
      19Q LOSS CNV 19Q LOSS WILD-TYPE 
                 4                130 
[1] "20p loss"
[1] 3
      20P LOSS CNV 20P LOSS WILD-TYPE 
                 6                128 
      20P LOSS CNV 20P LOSS WILD-TYPE 
                 6                128 
[1] "21q loss"
[1] 3
      21Q LOSS CNV 21Q LOSS WILD-TYPE 
                13                121 
      21Q LOSS CNV 21Q LOSS WILD-TYPE 
                13                121 
[1] "22q loss"
[1] 3
      22Q LOSS CNV 22Q LOSS WILD-TYPE 
                26                108 
      22Q LOSS CNV 22Q LOSS WILD-TYPE 
                26                108 
[1] "Xq loss"
[1] 3
      XQ LOSS CNV XQ LOSS WILD-TYPE 
                3               131 
      XQ LOSS CNV XQ LOSS WILD-TYPE 
                3               131 
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "RADIATIONTHERAPY"                      
[11] "KARNOFSKYPERFORMANCESCORE"             
[12] "HISTOLOGICALTYPE"                      
[13] "RADIATIONS.RADIATION.REGIMENINDICATION"
[14] "NUMBERPACKYEARSSMOKED"                 
[15] "DISTANT.METASTASIS"                    
[16] "LYMPH.NODE.METASTASIS"                 
[17] "NUMBER.OF.LYMPH.NODES"                 
[18] "TUMOR.STAGECODE"                       
[19] "NEOPLASM.DISEASESTAGE"                 
[20] "BATCHNUMBER"                           

Input Data has 20 rows and 134 columns.

[1] "Batch" "20"   
[1] "Last Follow UP"
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
         389           NA           NA           NA           NA          363 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
          NA           NA           NA           NA           NA           NA 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
          NA           NA           NA           NA           NA          179 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR 
         111           NA           NA           59           61           14 
TCGA-CF-A1HS TCGA-CF-A27C TCGA-CF-A3MF TCGA-CF-A3MG TCGA-CF-A3MH TCGA-CF-A3MI 
          13           21           NA           NA           NA           NA 
TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL 
          NA           NA          219          166          158          246 
TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB 
          77           NA          955          273          214          271 
TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX 
        3616         3056          218          178          202           55 
TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL 
         322           NA         3767         2291           67          121 
TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU 
         238           NA          319         1151          168          350 
TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 
          NA          252           NA         3989         1248           NA 
TCGA-E5-A2PC TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 
        1108           NA            3          268          253           NA 
TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA 
         209           NA          336          272          242          974 
TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP 
          NA          334          186          207           NA          138 
TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 
          NA           NA           59          240          208          461 
TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK 
         106          124           NA         1518          806          172 
TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY 
          NA          997          525          214           NA           25 
TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD 
          87           68           40          137           42           31 
TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS 
          76           33          234           64           95          177 
TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX 
         194          230           98          133          195          187 
TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QG TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK 
         173          232           NA          237          125          202 
TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-HQ-A2OE TCGA-K4-A3WS 
         194          162           46          204           NA          265 
TCGA-K4-A3WU TCGA-K4-A3WV 
         104          141 
Variable 1:'AGE':	nDistinctValues=43,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=33,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=90,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=13,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 10:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=7,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 12:'HISTOLOGICAL.TYPE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 13:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 14:'NUMBERPACKYEARSSMOKED':	nDistinctValues=35,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 15:'DISTANT.METASTASIS':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'LYMPH.NODE.METASTASIS':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'NUMBER.OF.LYMPH.NODES':	nDistinctValues=13,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 18:'TUMOR.STAGECODE':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 19:'NEOPLASM.DISEASESTAGE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 20:'BATCH.NUMBER':	nDistinctValues=13,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                         "GENDER"                     
[3] "KARNOFSKY.PERFORMANCE.SCORE" "NUMBERPACKYEARSSMOKED"      
[5] "DISTANT.METASTASIS"          "LYMPH.NODE.METASTASIS"      
[7] "NUMBER.OF.LYMPH.NODES"       "TUMOR.STAGECODE"            
[9] "NEOPLASM.DISEASESTAGE"      
[1] "TUMOR.?STAGE" "8"           
[1] "stage2"
vv
 T1  T2 T2A T2B  T3 T3A T3B  T4 T4A 
  1   6   4  20  26  22  19   2  18 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 134 columns, 1 survival variables, and 9 non-survival variables.
AGE, nv=43, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=7, binary=FALSE, numeric=TRUE
NUMBERPACKYEARSSMOKED, nv=35, binary=FALSE, numeric=TRUE
DISTANT.METASTASIS, nv=3, binary=FALSE, numeric=FALSE
LYMPH.NODE.METASTASIS, nv=5, binary=FALSE, numeric=FALSE
NUMBER.OF.LYMPH.NODES, nv=13, binary=FALSE, numeric=TRUE
TUMOR.STAGECODE, nv=0, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1p gain
D1V1, survival
                   sevent
clus2                0  1
  1P GAIN CNV        8  8
  1P GAIN WILD-TYPE 85 26
      1P GAIN CNV 1P GAIN WILD-TYPE 
               16               111 
      1P GAIN CNV 1P GAIN WILD-TYPE 
                8                26 
$`1P GAIN CNV`
TCGA-BT-A20T TCGA-BT-A2LA TCGA-C4-A0EZ TCGA-CU-A0YN TCGA-DK-A2I1 TCGA-DK-A2I2 
       14.89         5.88         8.98        12.92        10.59         7.76 
TCGA-DK-A3IM TCGA-DK-A3X2 TCGA-FD-A3SO TCGA-FD-A3SR TCGA-FT-A3EE TCGA-GC-A3RB 
        7.82        17.98         5.49        19.79         3.22         4.50 
TCGA-GD-A3OS TCGA-GU-A42P TCGA-GV-A3JZ TCGA-GV-A3QF 
        5.82         6.38         5.69         7.63 

$`1P GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LD TCGA-BT-A3PH 
        8.61         5.06         8.35         8.25         3.65         4.64 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YO 
        1.94         2.01         0.46         0.43         0.69         4.90 
TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 
        7.20         5.46         5.19         8.09         2.53         2.14 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD 
       31.40         8.98         7.04         8.91       118.88       100.47 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I4 TCGA-DK-A2I6 
        7.17         5.85         6.64         1.81       123.85        75.32 
TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT 
        2.20         3.98         8.22        10.49        37.84         5.52 
TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 
       11.51         9.67         8.28        10.55       131.15        41.03 
TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 
       36.43         0.10         8.81         8.32         8.94         6.87 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ 
        4.01        11.05         8.94         7.96        32.02        24.30 
TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SS 
       10.98         6.12         6.81         4.54        46.78         1.94 
TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-G2-A2EF 
        7.89         6.84        15.16         3.48         4.08        49.91 
TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB 
       26.50         5.65        26.93        32.78        17.26         7.04 
TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RC 
       20.12         0.82         2.86         2.24         1.32         1.38 
TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ 
        1.02         2.50         1.08         7.69         2.10         3.12 
TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3QH 
        7.56         3.22         4.37         6.41         6.15         7.79 
TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ 
        4.11         6.64         6.38         5.33         1.51         6.71 
TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        8.71         3.42         4.64 

      1P GAIN CNV 1P GAIN WILD-TYPE 
             3.22              0.10 
      1P GAIN CNV 1P GAIN WILD-TYPE 
            19.79            131.15 
      1P GAIN CNV 1P GAIN WILD-TYPE 
            7.695             6.870 
[1] "3.2 - 19.8 (7.7)"  "0.1 - 131.2 (6.9)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "1P GAIN CNV"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
      "1P GAIN CNV"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "1P GAIN CNV"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
      "1P GAIN CNV"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "1P GAIN CNV"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
      "1P GAIN CNV"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
[1] "hr=" "2.6"
D1V2, continuous
D1V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN CNV          5   11
  1P GAIN WILD-TYPE   29   89
        clus
vv       1P GAIN CNV 1P GAIN WILD-TYPE
  FEMALE           5                29
  MALE            11                89
D1V4, continuous
D1V5, continuous
                   vv
clus                M0 M1 MX
  1P GAIN CNV        9  1  6
  1P GAIN WILD-TYPE 68  4 45
D1V6, multiclass
    clus
vv   1P GAIN CNV 1P GAIN WILD-TYPE
  M0           9                68
  M1           1                 4
  MX           6                45
                   vv
clus                N0 N1 N2 N3 NX
  1P GAIN CNV        6  4  3  2  1
  1P GAIN WILD-TYPE 69 10 24  3  9
D1V7, multiclass
D1V8, continuous
D1V9, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  1P GAIN CNV             0        2         5        9
  1P GAIN WILD-TYPE       1       34        39       39
D1V10, multiclass
           clus
vv          1P GAIN CNV 1P GAIN WILD-TYPE
  STAGE I             0                 1
  STAGE II            2                34
  STAGE III           5                39
  STAGE IV            9                39

Clustering(2) Variable = 1q gain
D2V1, survival
                   sevent
clus2                0  1
  1Q GAIN CNV       17 11
  1Q GAIN WILD-TYPE 76 23
      1Q GAIN CNV 1Q GAIN WILD-TYPE 
               28                99 
      1Q GAIN CNV 1Q GAIN WILD-TYPE 
               11                23 
$`1Q GAIN CNV`
TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A20T TCGA-BT-A20V TCGA-BT-A2LA TCGA-C4-A0EZ 
        2.66         6.74        14.89         5.06         5.88         8.98 
TCGA-CU-A0YN TCGA-DK-A1A3 TCGA-DK-A1AD TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A3IM 
       12.92         2.53       100.47        10.59         7.76         7.82 
TCGA-DK-A3X2 TCGA-E7-A3Y1 TCGA-FD-A3SM TCGA-FD-A3SO TCGA-FD-A3SR TCGA-FJ-A3ZE 
       17.98         0.10         6.12         5.49        19.79         3.48 
TCGA-FT-A3EE TCGA-GC-A3RB TCGA-GC-A3WC TCGA-GD-A2C5 TCGA-GD-A3OS TCGA-GU-A42P 
        3.22         4.50         2.50         7.69         5.82         6.38 
TCGA-GV-A3JV TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QI 
        4.37         6.15         5.69         4.11 

$`1Q GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N 
       12.79         7.33         6.58        11.93        19.00        26.10 
TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20U TCGA-BT-A20W 
       12.16        17.85        19.46         5.06         8.61         8.35 
TCGA-BT-A20X TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR 
        8.25         3.65         4.64         1.94         2.01         0.46 
TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU 
        0.43         0.69         4.90         7.20         5.46         5.19 
TCGA-CU-A3YL TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB 
        8.09         2.14        31.40         8.98         7.04         8.91 
TCGA-DK-A1AC TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I4 
      118.88         7.17         5.85         6.64         1.81       123.85 
TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS 
       75.32         2.20         3.98         8.22        10.49        37.84 
TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY 
        5.52        11.51         9.67         8.28        10.55       131.15 
TCGA-DK-A3X1 TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 
       41.03        36.43         8.81         8.32         8.94         6.87 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ 
        4.01        11.05         8.94         7.96        32.02        24.30 
TCGA-FD-A3SL TCGA-FD-A3SN TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SS TCGA-FD-A43N 
       10.98         6.81         4.54        46.78         1.94         7.89 
TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZF TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK 
        6.84        15.16         4.08        49.91        26.50         5.65 
TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY 
       26.93        32.78        17.26         7.04        20.12         0.82 
TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3YS 
        2.86         2.24         1.32         1.38         1.02         1.08 
TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JW TCGA-GV-A3QF 
        2.10         3.12         7.56         3.22         6.41         7.63 
TCGA-GV-A3QH TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ 
        7.79         6.64         6.38         5.33         1.51         6.71 
TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        8.71         3.42         4.64 

      1Q GAIN CNV 1Q GAIN WILD-TYPE 
             0.10              0.43 
      1Q GAIN CNV 1Q GAIN WILD-TYPE 
           100.47            131.15 
      1Q GAIN CNV 1Q GAIN WILD-TYPE 
             6.00              7.33 
[1] "0.1 - 100.5 (6.0)" "0.4 - 131.2 (7.3)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
[1] "hr=" "2.6"
D2V2, continuous
D2V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN CNV          8   23
  1Q GAIN WILD-TYPE   26   77
        clus
vv       1Q GAIN CNV 1Q GAIN WILD-TYPE
  FEMALE           8                26
  MALE            23                77
D2V4, continuous
D2V5, continuous
                   vv
clus                M0 M1 MX
  1Q GAIN CNV       17  3 11
  1Q GAIN WILD-TYPE 60  2 40
D2V6, multiclass
    clus
vv   1Q GAIN CNV 1Q GAIN WILD-TYPE
  M0          17                60
  M1           3                 2
  MX          11                40
                   vv
clus                N0 N1 N2 N3 NX
  1Q GAIN CNV       12  5  9  3  2
  1Q GAIN WILD-TYPE 63  9 18  2  8
D2V7, multiclass
D2V8, continuous
D2V9, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  1Q GAIN CNV             0        5         9       16
  1Q GAIN WILD-TYPE       1       31        35       32
D2V10, multiclass
           clus
vv          1Q GAIN CNV 1Q GAIN WILD-TYPE
  STAGE I             0                 1
  STAGE II            5                31
  STAGE III           9                35
  STAGE IV           16                32

Clustering(3) Variable = 2p gain
D3V1, survival
                   sevent
clus2                0  1
  2P GAIN CNV       18  7
  2P GAIN WILD-TYPE 75 27
      2P GAIN CNV 2P GAIN WILD-TYPE 
               25               102 
      2P GAIN CNV 2P GAIN WILD-TYPE 
                7                27 
$`2P GAIN CNV`
TCGA-BT-A0YX TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A2LD TCGA-C4-A0EZ TCGA-C4-A0F6 
       11.93         5.06         8.35         3.65         8.98         2.01 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AC TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 
       31.40         8.98       118.88        10.59         7.76        75.32 
TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-FD-A3SR TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-G2-A3VY 
       41.03        17.98        19.79         4.08         3.22         0.82 
TCGA-GC-A3RD TCGA-GD-A2C5 TCGA-GD-A3OS TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QK 
        1.02         7.69         5.82         7.63         7.79         6.64 
TCGA-K4-A3WV 
        4.64 

$`2P GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A20J 
       12.79         7.33         2.66         6.74         6.58        19.00 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T 
       26.10        12.16        17.85        19.46         5.06        14.89 
TCGA-BT-A20U TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A3PH TCGA-C4-A0F0 TCGA-CF-A1HR 
        8.61         8.25         5.88         4.64         1.94         0.46 
TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ 
        0.43         0.69        12.92         4.90         7.20         5.46 
TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1AA TCGA-DK-A1AB 
        5.19         8.09         2.53         2.14         7.04         8.91 
TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I4 
      100.47         7.17         5.85         6.64         1.81       123.85 
TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS 
        2.20         3.98         7.82         8.22        10.49        37.84 
TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY 
        5.52        11.51         9.67         8.28        10.55       131.15 
TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 
       36.43         0.10         8.81         8.32         8.94         6.87 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ 
        4.01        11.05         8.94         7.96        32.02        24.30 
TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ 
       10.98         6.12         6.81         5.49         4.54        46.78 
TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZE TCGA-G2-A2EF 
        1.94         7.89         6.84        15.16         3.48        49.91 
TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB 
       26.50         5.65        26.93        32.78        17.26         7.04 
TCGA-G2-A3IE TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC 
       20.12         2.86         2.24         1.32         4.50         1.38 
TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GU-A42P TCGA-GU-A42Q 
        2.50         1.08         2.10         3.12         6.38         7.56 
TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QI 
        3.22         4.37         6.41         6.15         5.69         4.11 
TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU 
        6.38         5.33         1.51         6.71         8.71         3.42 

      2P GAIN CNV 2P GAIN WILD-TYPE 
             0.82              0.10 
      2P GAIN CNV 2P GAIN WILD-TYPE 
           118.88            131.15 
      2P GAIN CNV 2P GAIN WILD-TYPE 
            7.760             6.825 
[1] "0.8 - 118.9 (7.8)" "0.1 - 131.2 (6.8)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
      "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "2P GAIN CNV"       "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
      "2P GAIN CNV"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
      "2P GAIN CNV"       "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
      "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "2P GAIN CNV"       "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
      "2P GAIN CNV"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
      "2P GAIN CNV"       "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
      "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "2P GAIN CNV"       "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
      "2P GAIN CNV"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
      "2P GAIN CNV"       "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
[1] "hr=" "1.2"
D3V2, continuous
D3V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN CNV         15   12
  2P GAIN WILD-TYPE   19   88
        clus
vv       2P GAIN CNV 2P GAIN WILD-TYPE
  FEMALE          15                19
  MALE            12                88
D3V4, continuous
D3V5, continuous
                   vv
clus                M0 M1 MX
  2P GAIN CNV       17  1  8
  2P GAIN WILD-TYPE 60  4 43
D3V6, multiclass
    clus
vv   2P GAIN CNV 2P GAIN WILD-TYPE
  M0          17                60
  M1           1                 4
  MX           8                43
                   vv
clus                N0 N1 N2 N3 NX
  2P GAIN CNV       11  4  8  1  2
  2P GAIN WILD-TYPE 64 10 19  4  8
D3V7, multiclass
D3V8, continuous
D3V9, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  2P GAIN CNV             0        7         7       12
  2P GAIN WILD-TYPE       1       29        37       36
D3V10, multiclass
           clus
vv          2P GAIN CNV 2P GAIN WILD-TYPE
  STAGE I             0                 1
  STAGE II            7                29
  STAGE III           7                37
  STAGE IV           12                36

Clustering(4) Variable = 2q gain
D4V1, survival
                   sevent
clus2                0  1
  2Q GAIN CNV        8  1
  2Q GAIN WILD-TYPE 85 33
      2Q GAIN CNV 2Q GAIN WILD-TYPE 
                9               118 
      2Q GAIN CNV 2Q GAIN WILD-TYPE 
                1                33 
$`2Q GAIN CNV`
TCGA-DK-A1A6 TCGA-DK-A2I2 TCGA-FJ-A3ZF TCGA-G2-A3VY TCGA-GD-A3OS TCGA-GV-A3QF 
       31.40         7.76         4.08         0.82         5.82         7.63 
TCGA-GV-A3QH TCGA-GV-A40G TCGA-K4-A3WV 
        7.79         5.33         4.64 

$`2Q GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
       14.89         8.61         5.06         8.35         8.25         5.88 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR 
        3.65         4.64         8.98         1.94         2.01         0.46 
TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ 
        0.43         0.69        12.92         4.90         7.20         5.46 
TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A7 TCGA-DK-A1AA 
        5.19         8.09         2.53         2.14         8.98         7.04 
TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
        8.91       118.88       100.47         7.17         5.85         6.64 
TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL 
        1.81        10.59       123.85        75.32         2.20         3.98 
TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU 
        7.82         8.22        10.49        37.84         5.52        11.51 
TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 
        9.67         8.28        10.55       131.15        41.03        17.98 
TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 
       36.43         0.10         8.81         8.32         8.94         6.87 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ 
        4.01        11.05         8.94         7.96        32.02        24.30 
TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ 
       10.98         6.12         6.81         5.49         4.54        46.78 
TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZE 
       19.79         1.94         7.89         6.84        15.16         3.48 
TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
        3.22        49.91        26.50         5.65        26.93        32.78 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO 
       17.26         7.04        20.12         2.86         2.24         1.32 
TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 
        4.50         1.38         1.02         2.50         1.08         7.69 
TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV 
        2.10         3.12         6.38         7.56         3.22         4.37 
TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E 
        6.41         6.15         5.69         4.11         6.64         6.38 
TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU 
        1.51         6.71         8.71         3.42 

      2Q GAIN CNV 2Q GAIN WILD-TYPE 
             0.82              0.10 
      2Q GAIN CNV 2Q GAIN WILD-TYPE 
            31.40            131.15 
      2Q GAIN CNV 2Q GAIN WILD-TYPE 
             5.82              7.04 
[1] "0.8 - 31.4 (5.8)"  "0.1 - 131.2 (7.0)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
      "2Q GAIN CNV"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
      "2Q GAIN CNV"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
      "2Q GAIN CNV"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
[1] "hr=" "1.7"
D4V2, continuous
D4V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN CNV          3    7
  2Q GAIN WILD-TYPE   31   93
        clus
vv       2Q GAIN CNV 2Q GAIN WILD-TYPE
  FEMALE           3                31
  MALE             7                93
D4V4, continuous
D4V5, continuous
                   vv
clus                M0 M1 MX
  2Q GAIN CNV        4  0  5
  2Q GAIN WILD-TYPE 73  5 46
D4V6, multiclass
    clus
vv   2Q GAIN CNV 2Q GAIN WILD-TYPE
  M0           4                73
  M1           0                 5
  MX           5                46
                   vv
clus                N0 N1 N2 N3 NX
  2Q GAIN CNV        4  1  1  1  2
  2Q GAIN WILD-TYPE 71 13 26  4  8
D4V7, multiclass
D4V8, continuous
D4V9, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  2Q GAIN CNV             0        6         1        3
  2Q GAIN WILD-TYPE       1       30        43       45
D4V10, multiclass
           clus
vv          2Q GAIN CNV 2Q GAIN WILD-TYPE
  STAGE I             0                 1
  STAGE II            6                30
  STAGE III           1                43
  STAGE IV            3                45

Clustering(5) Variable = 3p gain
D5V1, survival
                   sevent
clus2                0  1
  3P GAIN CNV       20  5
  3P GAIN WILD-TYPE 73 29
      3P GAIN CNV 3P GAIN WILD-TYPE 
               25               102 
      3P GAIN CNV 3P GAIN WILD-TYPE 
                5                29 
$`3P GAIN CNV`
TCGA-BL-A13J TCGA-BT-A3PH TCGA-CF-A1HR TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 
        2.66         4.64         0.46         8.09         2.53         2.14 
TCGA-DK-A1AD TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I6 TCGA-DK-A3X2 TCGA-E5-A2PC 
      100.47         1.81        10.59        75.32        17.98        36.43 
TCGA-FJ-A3ZE TCGA-FT-A3EE TCGA-G2-A3VY TCGA-GC-A3OO TCGA-GD-A3OP TCGA-GD-A3OS 
        3.48         3.22         0.82         1.32         2.10         5.82 
TCGA-GU-A42P TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3QF TCGA-GV-A3QK TCGA-GV-A40G 
        6.38         4.37         6.41         7.63         6.64         5.33 
TCGA-K4-A3WV 
        4.64 

$`3P GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J 
       12.79         7.33         6.74         6.58        11.93        19.00 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T 
       26.10        12.16        17.85        19.46         5.06        14.89 
TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD 
        8.61         5.06         8.35         8.25         5.88         3.65 
TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN 
        8.98         1.94         2.01         0.43         0.69        12.92 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-DK-A1A6 TCGA-DK-A1A7 
        4.90         7.20         5.46         5.19        31.40         8.98 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
        7.04         8.91       118.88         7.17         5.85         6.64 
TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN 
        7.76       123.85         2.20         3.98         7.82         8.22 
TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW 
       10.49        37.84         5.52        11.51         9.67         8.28 
TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 
       10.55       131.15        41.03         0.10         8.81         8.32 
TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 
        8.94         6.87         4.01        11.05         8.94         7.96 
TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO 
       32.02        24.30        10.98         6.12         6.81         5.49 
TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U 
        4.54        46.78        19.79         1.94         7.89         6.84 
TCGA-FJ-A3Z7 TCGA-FJ-A3ZF TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL 
       15.16         4.08        49.91        26.50         5.65        26.93 
TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3BM TCGA-GC-A3I6 
       32.78        17.26         7.04        20.12         2.86         2.24 
TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 
        4.50         1.38         1.02         2.50         1.08         7.69 
TCGA-GD-A3OQ TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QH 
        3.12         7.56         3.22         6.15         5.69         7.79 
TCGA-GV-A3QI TCGA-GV-A40E TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU 
        4.11         6.38         1.51         6.71         8.71         3.42 

      3P GAIN CNV 3P GAIN WILD-TYPE 
             0.46              0.10 
      3P GAIN CNV 3P GAIN WILD-TYPE 
           100.47            131.15 
      3P GAIN CNV 3P GAIN WILD-TYPE 
            4.640             7.625 
[1] "0.5 - 100.5 (4.6)" "0.1 - 131.2 (7.6)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
      "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"3P GAIN WILD-TYPE"       "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
      "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
      "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
      "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"3P GAIN WILD-TYPE"       "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
      "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
      "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
      "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"3P GAIN WILD-TYPE"       "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
      "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
      "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
[1] "hr=" "1"  
D5V2, continuous
D5V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN CNV          8   20
  3P GAIN WILD-TYPE   26   80
        clus
vv       3P GAIN CNV 3P GAIN WILD-TYPE
  FEMALE           8                26
  MALE            20                80
D5V4, continuous
D5V5, continuous
                   vv
clus                M0 M1 MX
  3P GAIN CNV       15  1 11
  3P GAIN WILD-TYPE 62  4 40
D5V6, multiclass
    clus
vv   3P GAIN CNV 3P GAIN WILD-TYPE
  M0          15                62
  M1           1                 4
  MX          11                40
                   vv
clus                N0 N1 N2 N3 NX
  3P GAIN CNV       10  4 10  1  2
  3P GAIN WILD-TYPE 65 10 17  4  8
D5V7, multiclass
D5V8, continuous
D5V9, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  3P GAIN CNV             0        9         3       14
  3P GAIN WILD-TYPE       1       27        41       34
D5V10, multiclass
           clus
vv          3P GAIN CNV 3P GAIN WILD-TYPE
  STAGE I             0                 1
  STAGE II            9                27
  STAGE III           3                41
  STAGE IV           14                34

Clustering(6) Variable = 3q gain
D6V1, survival
                   sevent
clus2                0  1
  3Q GAIN CNV       31  5
  3Q GAIN WILD-TYPE 62 29
      3Q GAIN CNV 3Q GAIN WILD-TYPE 
               36                91 
      3Q GAIN CNV 3Q GAIN WILD-TYPE 
                5                29 
$`3Q GAIN CNV`
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BT-A0YX TCGA-BT-A20V TCGA-BT-A2LA TCGA-BT-A3PH 
       12.79         2.66        11.93         5.06         5.88         4.64 
TCGA-CF-A1HR TCGA-CU-A3KJ TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A6 TCGA-DK-A1A7 
        0.46         5.46         8.09         2.53        31.40         8.98 
TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A3X2 TCGA-E5-A2PC TCGA-FD-A3N5 TCGA-FD-A3SJ 
        1.81        10.59        17.98        36.43         8.94        24.30 
TCGA-FD-A3SL TCGA-FJ-A3ZE TCGA-G2-A2EJ TCGA-G2-A3VY TCGA-GC-A3I6 TCGA-GC-A3OO 
       10.98         3.48        26.50         0.82         2.24         1.32 
TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GD-A3OS TCGA-GU-A42P TCGA-GV-A3JV TCGA-GV-A3JW 
        1.02         2.50         5.82         6.38         4.37         6.41 
TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QK TCGA-GV-A40G TCGA-H4-A2HQ TCGA-K4-A3WV 
        7.63         7.79         6.64         5.33         6.71         4.64 

$`3Q GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O 
        7.33         6.74         6.58        19.00        26.10        12.16 
TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20W 
       17.85        19.46         5.06        14.89         8.61         8.35 
TCGA-BT-A20X TCGA-BT-A2LD TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HS 
        8.25         3.65         8.98         1.94         2.01         0.43 
TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3QU TCGA-DK-A1A5 
        0.69        12.92         4.90         7.20         5.19         2.14 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF 
        7.04         8.91       118.88       100.47         7.17         5.85 
TCGA-DK-A1AG TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL 
        6.64         7.76       123.85        75.32         2.20         3.98 
TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU 
        7.82         8.22        10.49        37.84         5.52        11.51 
TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-E7-A3Y1 
        9.67         8.28        10.55       131.15        41.03         0.10 
TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 
        8.81         8.32         8.94         6.87         4.01        11.05 
TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP 
        7.96        32.02         6.12         6.81         5.49         4.54 
TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 
       46.78        19.79         1.94         7.89         6.84        15.16 
TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
        4.08         3.22        49.91         5.65        26.93        32.78 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3BM TCGA-GC-A3RB TCGA-GC-A3RC 
       17.26         7.04        20.12         2.86         4.50         1.38 
TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GU-A42Q TCGA-GU-A42R 
        1.08         7.69         2.10         3.12         7.56         3.22 
TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QI TCGA-GV-A40E TCGA-H4-A2HO TCGA-K4-A3WS 
        6.15         5.69         4.11         6.38         1.51         8.71 
TCGA-K4-A3WU 
        3.42 

      3Q GAIN CNV 3Q GAIN WILD-TYPE 
             0.46              0.10 
      3Q GAIN CNV 3Q GAIN WILD-TYPE 
            36.43            131.15 
      3Q GAIN CNV 3Q GAIN WILD-TYPE 
             6.13              7.33 
[1] "0.5 - 36.4 (6.1)"  "0.1 - 131.2 (7.3)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
[1] "hr=" "1.7"
D6V2, continuous
D6V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN CNV         13   26
  3Q GAIN WILD-TYPE   21   74
        clus
vv       3Q GAIN CNV 3Q GAIN WILD-TYPE
  FEMALE          13                21
  MALE            26                74
D6V4, continuous
D6V5, continuous
                   vv
clus                M0 M1 MX
  3Q GAIN CNV       22  3 13
  3Q GAIN WILD-TYPE 55  2 38
D6V6, multiclass
    clus
vv   3Q GAIN CNV 3Q GAIN WILD-TYPE
  M0          22                55
  M1           3                 2
  MX          13                38
                   vv
clus                N0 N1 N2 N3 NX
  3Q GAIN CNV       16  4 12  1  5
  3Q GAIN WILD-TYPE 59 10 15  4  5
D6V7, multiclass
D6V8, continuous
D6V9, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  3Q GAIN CNV             1       11         8       17
  3Q GAIN WILD-TYPE       0       25        36       31
D6V10, multiclass
           clus
vv          3Q GAIN CNV 3Q GAIN WILD-TYPE
  STAGE I             1                 0
  STAGE II           11                25
  STAGE III           8                36
  STAGE IV           17                31

Clustering(7) Variable = 4p gain
D7V1, survival
                   sevent
clus2                0  1
  4P GAIN CNV        7  1
  4P GAIN WILD-TYPE 86 33
      4P GAIN CNV 4P GAIN WILD-TYPE 
                8               119 
      4P GAIN CNV 4P GAIN WILD-TYPE 
                1                33 
$`4P GAIN CNV`
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CU-A3KJ TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1AC 
        1.94         2.01         5.46         2.14        31.40       118.88 
TCGA-FD-A3NA TCGA-G2-A2EF 
       32.02        49.91 

$`4P GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
       14.89         8.61         5.06         8.35         8.25         5.88 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C 
        3.65         4.64         8.98         0.46         0.43         0.69 
TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 
       12.92         4.90         7.20         5.19         8.09         2.53 
TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF 
        8.98         7.04         8.91       100.47         7.17         5.85 
TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 
        6.64         1.81        10.59         7.76       123.85        75.32 
TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS 
        2.20         3.98         7.82         8.22        10.49        37.84 
TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY 
        5.52        11.51         9.67         8.28        10.55       131.15 
TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 
       41.03        17.98        36.43         0.10         8.81         8.32 
TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 
        8.94         6.87         4.01        11.05         8.94         7.96 
TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP 
       24.30        10.98         6.12         6.81         5.49         4.54 
TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 
       46.78        19.79         1.94         7.89         6.84        15.16 
TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL 
        3.48         4.08         3.22        26.50         5.65        26.93 
TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM 
       32.78        17.26         7.04        20.12         0.82         2.86 
TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC 
        2.24         1.32         4.50         1.38         1.02         2.50 
TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P 
        1.08         7.69         2.10         3.12         5.82         6.38 
TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ 
        7.56         3.22         4.37         6.41         6.15         5.69 
TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G 
        7.63         7.79         4.11         6.64         6.38         5.33 
TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        1.51         6.71         8.71         3.42         4.64 

      4P GAIN CNV 4P GAIN WILD-TYPE 
             1.94              0.10 
      4P GAIN CNV 4P GAIN WILD-TYPE 
           118.88            131.15 
      4P GAIN CNV 4P GAIN WILD-TYPE 
            18.43              7.04 
[1] "1.9 - 118.9 (18.4)" "0.1 - 131.2 (7.0)" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"4P GAIN WILD-TYPE"       "4P GAIN CNV"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"4P GAIN WILD-TYPE"       "4P GAIN CNV"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"4P GAIN WILD-TYPE"       "4P GAIN CNV"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"4P GAIN WILD-TYPE"       "4P GAIN CNV"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"4P GAIN WILD-TYPE"       "4P GAIN CNV"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"4P GAIN WILD-TYPE"       "4P GAIN CNV"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
[1] "hr=" "4.8"
D7V2, continuous
D7V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN CNV          1    7
  4P GAIN WILD-TYPE   33   93
        clus
vv       4P GAIN CNV 4P GAIN WILD-TYPE
  FEMALE           1                33
  MALE             7                93
D7V4, continuous
[1] "Remove cluster labels:" "4P GAIN CNV"           
clus
      4P GAIN CNV 4P GAIN WILD-TYPE 
                1                37 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A3MF        TCGA-CF-A3MG 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CF-A3MH        TCGA-CF-A3MI        TCGA-DK-A2HX        TCGA-DK-A3IN 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WX        TCGA-DK-A3X2        TCGA-E5-A2PC 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RC 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3YS        TCGA-GD-A3OS        TCGA-GV-A3JV 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GV-A40G 
"4P GAIN WILD-TYPE" 
D7V5, continuous
                   vv
clus                M0 M1 MX
  4P GAIN CNV        7  0  1
  4P GAIN WILD-TYPE 70  5 50
D7V6, multiclass
    clus
vv   4P GAIN CNV 4P GAIN WILD-TYPE
  M0           7                70
  M1           0                 5
  MX           1                50
                   vv
clus                N0 N1 N2 N3 NX
  4P GAIN CNV        7  1  0  0  0
  4P GAIN WILD-TYPE 68 13 27  5 10
D7V7, multiclass
D7V8, continuous
D7V9, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  4P GAIN CNV             0        4         3        1
  4P GAIN WILD-TYPE       1       32        41       47
D7V10, multiclass
           clus
vv          4P GAIN CNV 4P GAIN WILD-TYPE
  STAGE I             0                 1
  STAGE II            4                32
  STAGE III           3                41
  STAGE IV            1                47

Clustering(8) Variable = 4q gain
D8V1, survival
                   sevent
clus2                0  1
  4Q GAIN CNV        3  0
  4Q GAIN WILD-TYPE 90 34
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
                3               124 
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
                0                34 
$`4Q GAIN CNV`
TCGA-C4-A0F6 TCGA-CU-A3KJ TCGA-FD-A3NA 
        2.01         5.46        32.02 

$`4Q GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
       14.89         8.61         5.06         8.35         8.25         5.88 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-CF-A1HR TCGA-CF-A1HS 
        3.65         4.64         8.98         1.94         0.46         0.43 
TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3QU TCGA-CU-A3YL 
        0.69        12.92         4.90         7.20         5.19         8.09 
TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB 
        2.53         2.14        31.40         8.98         7.04         8.91 
TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX 
      118.88       100.47         7.17         5.85         6.64         1.81 
TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL 
       10.59         7.76       123.85        75.32         2.20         3.98 
TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU 
        7.82         8.22        10.49        37.84         5.52        11.51 
TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 
        9.67         8.28        10.55       131.15        41.03        17.98 
TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 
       36.43         0.10         8.81         8.32         8.94         6.87 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3SJ TCGA-FD-A3SL 
        4.01        11.05         8.94         7.96        24.30        10.98 
TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR 
        6.12         6.81         5.49         4.54        46.78        19.79 
TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZE TCGA-FJ-A3ZF 
        1.94         7.89         6.84        15.16         3.48         4.08 
TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
        3.22        49.91        26.50         5.65        26.93        32.78 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 
       17.26         7.04        20.12         0.82         2.86         2.24 
TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS 
        1.32         4.50         1.38         1.02         2.50         1.08 
TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q 
        7.69         2.10         3.12         5.82         6.38         7.56 
TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF 
        3.22         4.37         6.41         6.15         5.69         7.63 
TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO 
        7.79         4.11         6.64         6.38         5.33         1.51 
TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        6.71         8.71         3.42         4.64 

      4Q GAIN CNV 4Q GAIN WILD-TYPE 
             2.01              0.10 
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
            32.02            131.15 
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
             5.46              7.04 
[1] "2.0 - 32.0 (5.5)"  "0.1 - 131.2 (7.0)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
      "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
      "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
      "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
[1] "hr="     "2.6e+07"
D8V2, continuous
D8V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN CNV          1    2
  4Q GAIN WILD-TYPE   33   98
        clus
vv       4Q GAIN CNV 4Q GAIN WILD-TYPE
  FEMALE           1                33
  MALE             2                98
D8V4, continuous
D8V5, continuous
                   vv
clus                M0 M1 MX
  4Q GAIN CNV        2  0  1
  4Q GAIN WILD-TYPE 75  5 50
D8V6, multiclass
    clus
vv   4Q GAIN CNV 4Q GAIN WILD-TYPE
  M0           2                75
  M1           0                 5
  MX           1                50
                   vv
clus                N0 N1 N2 N3 NX
  4Q GAIN CNV        3  0  0  0  0
  4Q GAIN WILD-TYPE 72 14 27  5 10
D8V7, multiclass
D8V8, continuous
[1] "Remove cluster labels:" "4Q GAIN CNV"           
clus
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
                2                98 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20T 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BT-A20V        TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-CU-A0YN        TCGA-CU-A0YO 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-DK-A1A3 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6        TCGA-DK-A3IK 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN        TCGA-DK-A3IQ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU        TCGA-DK-A3WW 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A3WX        TCGA-DK-A3WY        TCGA-DK-A3X1        TCGA-DK-A3X2 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FT-A3EE        TCGA-GC-A3BM        TCGA-GC-A3I6 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GD-A3OQ        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GV-A3JV 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF        TCGA-GV-A3QG 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40G        TCGA-H4-A2HO 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WV 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
D8V9, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  4Q GAIN CNV             0        1         2        0
  4Q GAIN WILD-TYPE       1       35        42       48
D8V10, multiclass
           clus
vv          4Q GAIN CNV 4Q GAIN WILD-TYPE
  STAGE I             0                 1
  STAGE II            1                35
  STAGE III           2                42
  STAGE IV            0                48

Clustering(9) Variable = 5p gain
D9V1, survival
                   sevent
clus2                0  1
  5P GAIN CNV       25 10
  5P GAIN WILD-TYPE 68 24
      5P GAIN CNV 5P GAIN WILD-TYPE 
               35                92 
      5P GAIN CNV 5P GAIN WILD-TYPE 
               10                24 
$`5P GAIN CNV`
TCGA-BL-A0C8 TCGA-BL-A3JM TCGA-BT-A20N TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A2LA 
       12.79         6.74        26.10         5.06         8.35         5.88 
TCGA-CF-A1HS TCGA-CU-A0YN TCGA-CU-A0YR TCGA-CU-A3QU TCGA-DK-A1A3 TCGA-DK-A2I4 
        0.43        12.92         7.20         5.19         2.53       123.85 
TCGA-DK-A2I6 TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WX TCGA-FD-A3B3 TCGA-FD-A3B4 
       75.32        11.51         9.67        10.55         8.81         8.32 
TCGA-FD-A3B5 TCGA-FD-A3N5 TCGA-FD-A3SO TCGA-FT-A3EE TCGA-G2-A2EO TCGA-GC-A3I6 
        8.94         8.94         5.49         3.22        32.78         2.24 
TCGA-GC-A3OO TCGA-GC-A3YS TCGA-GD-A3OS TCGA-GU-A42P TCGA-GV-A3JV TCGA-GV-A3QF 
        1.32         1.08         5.82         6.38         4.37         7.63 
TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HQ 
        7.79         4.11         6.38         5.33         6.71 

$`5P GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20O 
        7.33         2.66         6.58        11.93        19.00        12.16 
TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20X 
       17.85        19.46         5.06        14.89         8.61         8.25 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR 
        3.65         4.64         8.98         1.94         2.01         0.46 
TCGA-CF-A27C TCGA-CU-A0YO TCGA-CU-A3KJ TCGA-CU-A3YL TCGA-DK-A1A5 TCGA-DK-A1A6 
        0.69         4.90         5.46         8.09         2.14        31.40 
TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE 
        8.98         7.04         8.91       118.88       100.47         7.17 
TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A3IK 
        5.85         6.64         1.81        10.59         7.76         2.20 
TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT 
        3.98         7.82         8.22        10.49        37.84         5.52 
TCGA-DK-A3WW TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-E5-A2PC TCGA-E7-A3Y1 
        8.28       131.15        41.03        17.98        36.43         0.10 
TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ 
        6.87         4.01        11.05         7.96        32.02        24.30 
TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR 
       10.98         6.12         6.81         4.54        46.78        19.79 
TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZE TCGA-FJ-A3ZF 
        1.94         7.89         6.84        15.16         3.48         4.08 
TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2ES TCGA-G2-A3IB 
       49.91        26.50         5.65        26.93        17.26         7.04 
TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD 
       20.12         0.82         2.86         4.50         1.38         1.02 
TCGA-GC-A3WC TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GU-A42Q TCGA-GU-A42R 
        2.50         7.69         2.10         3.12         7.56         3.22 
TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QK TCGA-H4-A2HO TCGA-K4-A3WS 
        6.41         6.15         5.69         6.64         1.51         8.71 
TCGA-K4-A3WU TCGA-K4-A3WV 
        3.42         4.64 

      5P GAIN CNV 5P GAIN WILD-TYPE 
             0.43              0.10 
      5P GAIN CNV 5P GAIN WILD-TYPE 
           123.85            131.15 
      5P GAIN CNV 5P GAIN WILD-TYPE 
             6.74              7.04 
[1] "0.4 - 123.8 (6.7)" "0.1 - 131.2 (7.0)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
      "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
      "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
      "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
      "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
      "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
      "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D9V2, continuous
D9V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN CNV          8   31
  5P GAIN WILD-TYPE   26   69
        clus
vv       5P GAIN CNV 5P GAIN WILD-TYPE
  FEMALE           8                26
  MALE            31                69
D9V4, continuous
D9V5, continuous
                   vv
clus                M0 M1 MX
  5P GAIN CNV       23  1 15
  5P GAIN WILD-TYPE 54  4 36
D9V6, multiclass
    clus
vv   5P GAIN CNV 5P GAIN WILD-TYPE
  M0          23                54
  M1           1                 4
  MX          15                36
                   vv
clus                N0 N1 N2 N3 NX
  5P GAIN CNV       21  7  4  0  7
  5P GAIN WILD-TYPE 54  7 23  5  3
D9V7, multiclass
D9V8, continuous
D9V9, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  5P GAIN CNV             1       12        13       12
  5P GAIN WILD-TYPE       0       24        31       36
D9V10, multiclass
           clus
vv          5P GAIN CNV 5P GAIN WILD-TYPE
  STAGE I             1                 0
  STAGE II           12                24
  STAGE III          13                31
  STAGE IV           12                36

Clustering(10) Variable = 5q gain
D10V1, survival
                   sevent
clus2                0  1
  5Q GAIN CNV       12  3
  5Q GAIN WILD-TYPE 81 31
      5Q GAIN CNV 5Q GAIN WILD-TYPE 
               15               112 
      5Q GAIN CNV 5Q GAIN WILD-TYPE 
                3                31 
$`5Q GAIN CNV`
TCGA-BL-A0C8 TCGA-BL-A3JM TCGA-BT-A20N TCGA-CF-A1HS TCGA-DK-A2I4 TCGA-DK-A2I6 
       12.79         6.74        26.10         0.43       123.85        75.32 
TCGA-FT-A3EE TCGA-G2-A2EO TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3YS TCGA-GV-A3JV 
        3.22        32.78         2.24         1.32         1.08         4.37 
TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A40E 
        7.79         4.11         6.38 

$`5Q GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20O 
        7.33         2.66         6.58        11.93        19.00        12.16 
TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V 
       17.85        19.46         5.06        14.89         8.61         5.06 
TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ 
        8.35         8.25         5.88         3.65         4.64         8.98 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO 
        1.94         2.01         0.46         0.69        12.92         4.90 
TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 
        7.20         5.46         5.19         8.09         2.53         2.14 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD 
       31.40         8.98         7.04         8.91       118.88       100.47 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 
        7.17         5.85         6.64         1.81        10.59         7.76 
TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS 
        2.20         3.98         7.82         8.22        10.49        37.84 
TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY 
        5.52        11.51         9.67         8.28        10.55       131.15 
TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 
       41.03        17.98        36.43         0.10         8.81         8.32 
TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 
        8.94         6.87         4.01        11.05         8.94         7.96 
TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO 
       32.02        24.30        10.98         6.12         6.81         5.49 
TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U 
        4.54        46.78        19.79         1.94         7.89         6.84 
TCGA-FJ-A3Z7 TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK 
       15.16         3.48         4.08        49.91        26.50         5.65 
TCGA-G2-A2EL TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM 
       26.93        17.26         7.04        20.12         0.82         2.86 
TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GD-A2C5 TCGA-GD-A3OP 
        4.50         1.38         1.02         2.50         7.69         2.10 
TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JW 
        3.12         5.82         6.38         7.56         3.22         6.41 
TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QK TCGA-GV-A40G TCGA-H4-A2HO 
        6.15         5.69         7.63         6.64         5.33         1.51 
TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        6.71         8.71         3.42         4.64 

      5Q GAIN CNV 5Q GAIN WILD-TYPE 
             0.43              0.10 
      5Q GAIN CNV 5Q GAIN WILD-TYPE 
           123.85            131.15 
      5Q GAIN CNV 5Q GAIN WILD-TYPE 
            6.380             7.105 
[1] "0.4 - 123.8 (6.4)" "0.1 - 131.2 (7.1)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV"       "5Q GAIN CNV" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV"       "5Q GAIN CNV" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV"       "5Q GAIN CNV" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV"       "5Q GAIN CNV" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV"       "5Q GAIN CNV" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV"       "5Q GAIN CNV" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
[1] "hr=" "1.7"
D10V2, continuous
D10V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN CNV          2   15
  5Q GAIN WILD-TYPE   32   85
        clus
vv       5Q GAIN CNV 5Q GAIN WILD-TYPE
  FEMALE           2                32
  MALE            15                85
D10V4, continuous
D10V5, continuous
                   vv
clus                M0 M1 MX
  5Q GAIN CNV       10  0  7
  5Q GAIN WILD-TYPE 67  5 44
D10V6, multiclass
    clus
vv   5Q GAIN CNV 5Q GAIN WILD-TYPE
  M0          10                67
  M1           0                 5
  MX           7                44
                   vv
clus                N0 N1 N2 N3 NX
  5Q GAIN CNV       11  3  0  0  3
  5Q GAIN WILD-TYPE 64 11 27  5  7
D10V7, multiclass
D10V8, continuous
D10V9, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  5Q GAIN CNV             1        4         8        3
  5Q GAIN WILD-TYPE       0       32        36       45
D10V10, multiclass
           clus
vv          5Q GAIN CNV 5Q GAIN WILD-TYPE
  STAGE I             1                 0
  STAGE II            4                32
  STAGE III           8                36
  STAGE IV            3                45

Clustering(11) Variable = 6p gain
D11V1, survival
                   sevent
clus2                0  1
  6P GAIN CNV        8  2
  6P GAIN WILD-TYPE 85 32
      6P GAIN CNV 6P GAIN WILD-TYPE 
               10               117 
      6P GAIN CNV 6P GAIN WILD-TYPE 
                2                32 
$`6P GAIN CNV`
TCGA-DK-A1AC TCGA-DK-A2I6 TCGA-FD-A3SR TCGA-FT-A3EE TCGA-G2-A3VY TCGA-GC-A3I6 
      118.88        75.32        19.79         3.22         0.82         2.24 
TCGA-GC-A3RC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GU-A42P 
        1.38         1.08         7.69         6.38 

$`6P GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
       14.89         8.61         5.06         8.35         8.25         5.88 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR 
        3.65         4.64         8.98         1.94         2.01         0.46 
TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ 
        0.43         0.69        12.92         4.90         7.20         5.46 
TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 
        5.19         8.09         2.53         2.14        31.40         8.98 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
        7.04         8.91       100.47         7.17         5.85         6.64 
TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A3IK TCGA-DK-A3IL 
        1.81        10.59         7.76       123.85         2.20         3.98 
TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU 
        7.82         8.22        10.49        37.84         5.52        11.51 
TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 
        9.67         8.28        10.55       131.15        41.03        17.98 
TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 
       36.43         0.10         8.81         8.32         8.94         6.87 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ 
        4.01        11.05         8.94         7.96        32.02        24.30 
TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ 
       10.98         6.12         6.81         5.49         4.54        46.78 
TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZE TCGA-FJ-A3ZF 
        1.94         7.89         6.84        15.16         3.48         4.08 
TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES 
       49.91        26.50         5.65        26.93        32.78        17.26 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3BM TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RD 
        7.04        20.12         2.86         1.32         4.50         1.02 
TCGA-GC-A3WC TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42Q TCGA-GU-A42R 
        2.50         2.10         3.12         5.82         7.56         3.22 
TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH 
        4.37         6.41         6.15         5.69         7.63         7.79 
TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ 
        4.11         6.64         6.38         5.33         1.51         6.71 
TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        8.71         3.42         4.64 

      6P GAIN CNV 6P GAIN WILD-TYPE 
             0.82              0.10 
      6P GAIN CNV 6P GAIN WILD-TYPE 
           118.88            131.15 
      6P GAIN CNV 6P GAIN WILD-TYPE 
             4.80              7.04 
[1] "0.8 - 118.9 (4.8)" "0.1 - 131.2 (7.0)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
      "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
      "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
      "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
      "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
      "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
      "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
[1] "hr=" "1.6"
D11V2, continuous
D11V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN CNV          2    8
  6P GAIN WILD-TYPE   32   92
        clus
vv       6P GAIN CNV 6P GAIN WILD-TYPE
  FEMALE           2                32
  MALE             8                92
D11V4, continuous
D11V5, continuous
                   vv
clus                M0 M1 MX
  6P GAIN CNV        5  0  4
  6P GAIN WILD-TYPE 72  5 47
D11V6, multiclass
    clus
vv   6P GAIN CNV 6P GAIN WILD-TYPE
  M0           5                72
  M1           0                 5
  MX           4                47
                   vv
clus                N0 N1 N2 N3 NX
  6P GAIN CNV        4  3  2  0  0
  6P GAIN WILD-TYPE 71 11 25  5 10
D11V7, multiclass
D11V8, continuous
D11V9, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  6P GAIN CNV             0        2         3        5
  6P GAIN WILD-TYPE       1       34        41       43
D11V10, multiclass
           clus
vv          6P GAIN CNV 6P GAIN WILD-TYPE
  STAGE I             0                 1
  STAGE II            2                34
  STAGE III           3                41
  STAGE IV            5                43

Clustering(12) Variable = 6q gain
D12V1, survival
                   sevent
clus2                0  1
  6Q GAIN CNV        5  0
  6Q GAIN WILD-TYPE 88 34
      6Q GAIN CNV 6Q GAIN WILD-TYPE 
                5               122 
      6Q GAIN CNV 6Q GAIN WILD-TYPE 
                0                34 
$`6Q GAIN CNV`
TCGA-BT-A2LA TCGA-DK-A1AC TCGA-DK-A2I6 TCGA-GC-A3YS TCGA-GU-A42P 
        5.88       118.88        75.32         1.08         6.38 

$`6Q GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LD 
       14.89         8.61         5.06         8.35         8.25         3.65 
TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS 
        4.64         8.98         1.94         2.01         0.46         0.43 
TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU 
        0.69        12.92         4.90         7.20         5.46         5.19 
TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA 
        8.09         2.53         2.14        31.40         8.98         7.04 
TCGA-DK-A1AB TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX 
        8.91       100.47         7.17         5.85         6.64         1.81 
TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM 
       10.59         7.76       123.85         2.20         3.98         7.82 
TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV 
        8.22        10.49        37.84         5.52        11.51         9.67 
TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-E5-A2PC 
        8.28        10.55       131.15        41.03        17.98        36.43 
TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 
        0.10         8.81         8.32         8.94         6.87         4.01 
TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL 
       11.05         8.94         7.96        32.02        24.30        10.98 
TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR 
        6.12         6.81         5.49         4.54        46.78        19.79 
TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZE TCGA-FJ-A3ZF 
        1.94         7.89         6.84        15.16         3.48         4.08 
TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
        3.22        49.91        26.50         5.65        26.93        32.78 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 
       17.26         7.04        20.12         0.82         2.86         2.24 
TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GD-A2C5 
        1.32         4.50         1.38         1.02         2.50         7.69 
TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV 
        2.10         3.12         5.82         7.56         3.22         4.37 
TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI 
        6.41         6.15         5.69         7.63         7.79         4.11 
TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS 
        6.64         6.38         5.33         1.51         6.71         8.71 
TCGA-K4-A3WU TCGA-K4-A3WV 
        3.42         4.64 

      6Q GAIN CNV 6Q GAIN WILD-TYPE 
             1.08              0.10 
      6Q GAIN CNV 6Q GAIN WILD-TYPE 
           118.88            131.15 
      6Q GAIN CNV 6Q GAIN WILD-TYPE 
             6.38              7.04 
[1] "1.1 - 118.9 (6.4)" "0.1 - 131.2 (7.0)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
[1] "hr="     "7.9e+07"
D12V2, continuous
D12V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN CNV          0    5
  6Q GAIN WILD-TYPE   34   95
        clus
vv       6Q GAIN CNV 6Q GAIN WILD-TYPE
  FEMALE           0                34
  MALE             5                95
D12V4, continuous
[1] "Remove cluster labels:" "6Q GAIN CNV"           
clus
      6Q GAIN CNV 6Q GAIN WILD-TYPE 
                1                37 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A3MF        TCGA-CF-A3MG 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CF-A3MH        TCGA-CF-A3MI        TCGA-DK-A2HX        TCGA-DK-A3IN 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WX        TCGA-DK-A3X2        TCGA-E5-A2PC 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GD-A3OS        TCGA-GV-A3JV 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GV-A40G 
"6Q GAIN WILD-TYPE" 
D12V5, continuous
                   vv
clus                M0 M1 MX
  6Q GAIN CNV        4  0  1
  6Q GAIN WILD-TYPE 73  5 50
D12V6, multiclass
    clus
vv   6Q GAIN CNV 6Q GAIN WILD-TYPE
  M0           4                73
  M1           0                 5
  MX           1                50
                   vv
clus                N0 N1 N2 N3 NX
  6Q GAIN CNV        2  3  0  0  0
  6Q GAIN WILD-TYPE 73 11 27  5 10
D12V7, multiclass
D12V8, continuous
D12V9, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  6Q GAIN CNV             0        0         2        3
  6Q GAIN WILD-TYPE       1       36        42       45
D12V10, multiclass
           clus
vv          6Q GAIN CNV 6Q GAIN WILD-TYPE
  STAGE I             0                 1
  STAGE II            0                36
  STAGE III           2                42
  STAGE IV            3                45

Clustering(13) Variable = 7p gain
D13V1, survival
                   sevent
clus2                0  1
  7P GAIN CNV       27 10
  7P GAIN WILD-TYPE 66 24
      7P GAIN CNV 7P GAIN WILD-TYPE 
               37                90 
      7P GAIN CNV 7P GAIN WILD-TYPE 
               10                24 
$`7P GAIN CNV`
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A20N TCGA-BT-A2LA TCGA-BT-A2LD 
       12.79         2.66         6.58        26.10         5.88         3.65 
TCGA-C4-A0F6 TCGA-CF-A1HS TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A3KJ TCGA-DK-A1A3 
        2.01         0.43        12.92         4.90         5.46         2.53 
TCGA-DK-A1AC TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3X1 
      118.88        10.59         7.76         2.20         3.98        41.03 
TCGA-DK-A3X2 TCGA-FD-A3B5 TCGA-FD-A3B7 TCGA-FD-A3N5 TCGA-FD-A43N TCGA-FJ-A3Z7 
       17.98         8.94         4.01         8.94         7.89        15.16 
TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-G2-A2EO TCGA-G2-A3VY TCGA-GC-A3I6 TCGA-GC-A3RC 
        4.08         3.22        32.78         0.82         2.24         1.38 
TCGA-GC-A3RD TCGA-GD-A2C5 TCGA-GD-A3OS TCGA-GU-A42Q TCGA-GV-A3JZ TCGA-GV-A3QK 
        1.02         7.69         5.82         7.56         5.69         6.64 
TCGA-GV-A40E 
        6.38 

$`7P GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20O TCGA-BT-A20P 
        7.33         6.74        11.93        19.00        12.16        17.85 
TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W 
       19.46         5.06        14.89         8.61         5.06         8.35 
TCGA-BT-A20X TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-CF-A1HR TCGA-CF-A27C 
        8.25         4.64         8.98         1.94         0.46         0.69 
TCGA-CU-A0YR TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 
        7.20         5.19         8.09         2.14        31.40         8.98 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
        7.04         8.91       100.47         7.17         5.85         6.64 
TCGA-DK-A2HX TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ 
        1.81       123.85        75.32         7.82         8.22        10.49 
TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX 
       37.84         5.52        11.51         9.67         8.28        10.55 
TCGA-DK-A3WY TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B6 
      131.15        36.43         0.10         8.81         8.32         6.87 
TCGA-FD-A3B8 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM 
       11.05         7.96        32.02        24.30        10.98         6.12 
TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS 
        6.81         5.49         4.54        46.78        19.79         1.94 
TCGA-FD-A43U TCGA-FJ-A3ZE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL 
        6.84         3.48        49.91        26.50         5.65        26.93 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3BM TCGA-GC-A3OO TCGA-GC-A3RB 
       17.26         7.04        20.12         2.86         1.32         4.50 
TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GU-A42P TCGA-GU-A42R 
        2.50         1.08         2.10         3.12         6.38         3.22 
TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI 
        4.37         6.41         6.15         7.63         7.79         4.11 
TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        5.33         1.51         6.71         8.71         3.42         4.64 

      7P GAIN CNV 7P GAIN WILD-TYPE 
             0.43              0.10 
      7P GAIN CNV 7P GAIN WILD-TYPE 
           118.88            131.15 
      7P GAIN CNV 7P GAIN WILD-TYPE 
            5.880             7.265 
[1] "0.4 - 118.9 (5.9)" "0.1 - 131.2 (7.3)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D13V2, continuous
D13V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN CNV         12   28
  7P GAIN WILD-TYPE   22   72
        clus
vv       7P GAIN CNV 7P GAIN WILD-TYPE
  FEMALE          12                22
  MALE            28                72
D13V4, continuous
D13V5, continuous
                   vv
clus                M0 M1 MX
  7P GAIN CNV       25  0 14
  7P GAIN WILD-TYPE 52  5 37
D13V6, multiclass
    clus
vv   7P GAIN CNV 7P GAIN WILD-TYPE
  M0          25                52
  M1           0                 5
  MX          14                37
                   vv
clus                N0 N1 N2 N3 NX
  7P GAIN CNV       22  2 10  2  3
  7P GAIN WILD-TYPE 53 12 17  3  7
D13V7, multiclass
D13V8, continuous
D13V9, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  7P GAIN CNV             1        8        16       13
  7P GAIN WILD-TYPE       0       28        28       35
D13V10, multiclass
           clus
vv          7P GAIN CNV 7P GAIN WILD-TYPE
  STAGE I             1                 0
  STAGE II            8                28
  STAGE III          16                28
  STAGE IV           13                35

Clustering(14) Variable = 7q gain
D14V1, survival
                   sevent
clus2                0  1
  7Q GAIN CNV       25  9
  7Q GAIN WILD-TYPE 68 25
      7Q GAIN CNV 7Q GAIN WILD-TYPE 
               34                93 
      7Q GAIN CNV 7Q GAIN WILD-TYPE 
                9                25 
$`7Q GAIN CNV`
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A20N TCGA-BT-A2LA TCGA-BT-A2LD 
       12.79         2.66         6.58        26.10         5.88         3.65 
TCGA-C4-A0F6 TCGA-CF-A1HS TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A3KJ TCGA-DK-A1AD 
        2.01         0.43        12.92         4.90         5.46       100.47 
TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A3IL TCGA-DK-A3X2 TCGA-FD-A3B4 
        1.81        10.59         7.76         3.98        17.98         8.32 
TCGA-FD-A3B7 TCGA-FD-A3N5 TCGA-FD-A43N TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-G2-A2EO 
        4.01         8.94         7.89         4.08         3.22        32.78 
TCGA-G2-A3VY TCGA-GC-A3I6 TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GD-A2C5 TCGA-GD-A3OS 
        0.82         2.24         1.38         1.02         7.69         5.82 
TCGA-GV-A3JZ TCGA-GV-A3QK TCGA-GV-A40E TCGA-K4-A3WV 
        5.69         6.64         6.38         4.64 

$`7Q GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20O TCGA-BT-A20P 
        7.33         6.74        11.93        19.00        12.16        17.85 
TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W 
       19.46         5.06        14.89         8.61         5.06         8.35 
TCGA-BT-A20X TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-CF-A1HR TCGA-CF-A27C 
        8.25         4.64         8.98         1.94         0.46         0.69 
TCGA-CU-A0YR TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 
        7.20         5.19         8.09         2.53         2.14        31.40 
TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AE TCGA-DK-A1AF 
        8.98         7.04         8.91       118.88         7.17         5.85 
TCGA-DK-A1AG TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IM TCGA-DK-A3IN 
        6.64       123.85        75.32         2.20         7.82         8.22 
TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW 
       10.49        37.84         5.52        11.51         9.67         8.28 
TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 
       10.55       131.15        41.03        36.43         0.10         8.81 
TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B8 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ 
        8.94         6.87        11.05         7.96        32.02        24.30 
TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ 
       10.98         6.12         6.81         5.49         4.54        46.78 
TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZE TCGA-G2-A2EF 
       19.79         1.94         6.84        15.16         3.48        49.91 
TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE 
       26.50         5.65        26.93        17.26         7.04        20.12 
TCGA-GC-A3BM TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A3OP 
        2.86         1.32         4.50         2.50         1.08         2.10 
TCGA-GD-A3OQ TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW 
        3.12         6.38         7.56         3.22         4.37         6.41 
TCGA-GV-A3JX TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A40G TCGA-H4-A2HO 
        6.15         7.63         7.79         4.11         5.33         1.51 
TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU 
        6.71         8.71         3.42 

      7Q GAIN CNV 7Q GAIN WILD-TYPE 
             0.43              0.10 
      7Q GAIN CNV 7Q GAIN WILD-TYPE 
           100.47            131.15 
      7Q GAIN CNV 7Q GAIN WILD-TYPE 
            5.755             7.560 
[1] "0.4 - 100.5 (5.8)" "0.1 - 131.2 (7.6)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
[1] "hr=" "1.5"
D14V2, continuous
D14V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN CNV         14   22
  7Q GAIN WILD-TYPE   20   78
        clus
vv       7Q GAIN CNV 7Q GAIN WILD-TYPE
  FEMALE          14                20
  MALE            22                78
D14V4, continuous
D14V5, continuous
                   vv
clus                M0 M1 MX
  7Q GAIN CNV       21  0 14
  7Q GAIN WILD-TYPE 56  5 37
D14V6, multiclass
    clus
vv   7Q GAIN CNV 7Q GAIN WILD-TYPE
  M0          21                56
  M1           0                 5
  MX          14                37
                   vv
clus                N0 N1 N2 N3 NX
  7Q GAIN CNV       20  1  9  2  3
  7Q GAIN WILD-TYPE 55 13 18  3  7
D14V7, multiclass
D14V8, continuous
D14V9, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  7Q GAIN CNV             1        8        14       11
  7Q GAIN WILD-TYPE       0       28        30       37
D14V10, multiclass
           clus
vv          7Q GAIN CNV 7Q GAIN WILD-TYPE
  STAGE I             1                 0
  STAGE II            8                28
  STAGE III          14                30
  STAGE IV           11                37

Clustering(15) Variable = 8p gain
D15V1, survival
                   sevent
clus2                0  1
  8P GAIN CNV        9  4
  8P GAIN WILD-TYPE 84 30
      8P GAIN CNV 8P GAIN WILD-TYPE 
               13               114 
      8P GAIN CNV 8P GAIN WILD-TYPE 
                4                30 
$`8P GAIN CNV`
TCGA-BL-A3JM TCGA-BT-A20N TCGA-BT-A20V TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-DK-A1A6 
        6.74        26.10         5.06         1.94         2.01        31.40 
TCGA-DK-A1AE TCGA-DK-A3X2 TCGA-FD-A3N6 TCGA-G2-A2ES TCGA-GC-A3I6 TCGA-GV-A3JV 
        7.17        17.98         7.96        17.26         2.24         4.37 
TCGA-GV-A3QI 
        4.11 

$`8P GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J 
       12.79         7.33         2.66         6.58        11.93        19.00 
TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U 
       12.16        17.85        19.46         5.06        14.89         8.61 
TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ 
        8.35         8.25         5.88         3.65         4.64         8.98 
TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR 
        0.46         0.43         0.69        12.92         4.90         7.20 
TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A7 
        5.46         5.19         8.09         2.53         2.14         8.98 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AF TCGA-DK-A1AG 
        7.04         8.91       118.88       100.47         5.85         6.64 
TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK 
        1.81        10.59         7.76       123.85        75.32         2.20 
TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT 
        3.98         7.82         8.22        10.49        37.84         5.52 
TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 
       11.51         9.67         8.28        10.55       131.15        41.03 
TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 
       36.43         0.10         8.81         8.32         8.94         6.87 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL 
        4.01        11.05         8.94        32.02        24.30        10.98 
TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR 
        6.12         6.81         5.49         4.54        46.78        19.79 
TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZE TCGA-FJ-A3ZF 
        1.94         7.89         6.84        15.16         3.48         4.08 
TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
        3.22        49.91        26.50         5.65        26.93        32.78 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3OO TCGA-GC-A3RB 
        7.04        20.12         0.82         2.86         1.32         4.50 
TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP 
        1.38         1.02         2.50         1.08         7.69         2.10 
TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JW 
        3.12         5.82         6.38         7.56         3.22         6.41 
TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QK TCGA-GV-A40E 
        6.15         5.69         7.63         7.79         6.64         6.38 
TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        5.33         1.51         6.71         8.71         3.42         4.64 

      8P GAIN CNV 8P GAIN WILD-TYPE 
             1.94              0.10 
      8P GAIN CNV 8P GAIN WILD-TYPE 
            31.40            131.15 
      8P GAIN CNV 8P GAIN WILD-TYPE 
             6.74              7.04 
[1] "1.9 - 31.4 (6.7)"  "0.1 - 131.2 (7.0)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D15V2, continuous
D15V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN CNV          3   12
  8P GAIN WILD-TYPE   31   88
        clus
vv       8P GAIN CNV 8P GAIN WILD-TYPE
  FEMALE           3                31
  MALE            12                88
D15V4, continuous
D15V5, continuous
                   vv
clus                M0 M1 MX
  8P GAIN CNV       10  0  5
  8P GAIN WILD-TYPE 67  5 46
D15V6, multiclass
    clus
vv   8P GAIN CNV 8P GAIN WILD-TYPE
  M0          10                67
  M1           0                 5
  MX           5                46
                   vv
clus                N0 N1 N2 N3 NX
  8P GAIN CNV       10  2  3  0  0
  8P GAIN WILD-TYPE 65 12 24  5 10
D15V7, multiclass
D15V8, continuous
D15V9, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  8P GAIN CNV             0        4         6        4
  8P GAIN WILD-TYPE       1       32        38       44
D15V10, multiclass
           clus
vv          8P GAIN CNV 8P GAIN WILD-TYPE
  STAGE I             0                 1
  STAGE II            4                32
  STAGE III           6                38
  STAGE IV            4                44

Clustering(16) Variable = 8q gain
D16V1, survival
                   sevent
clus2                0  1
  8Q GAIN CNV       28 10
  8Q GAIN WILD-TYPE 65 24
      8Q GAIN CNV 8Q GAIN WILD-TYPE 
               38                89 
      8Q GAIN CNV 8Q GAIN WILD-TYPE 
               10                24 
$`8Q GAIN CNV`
TCGA-BL-A0C8 TCGA-BL-A3JM TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20V TCGA-BT-A20W 
       12.79         6.74        19.00        26.10         5.06         8.35 
TCGA-BT-A20X TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CU-A0YN TCGA-CU-A3KJ TCGA-CU-A3QU 
        8.25         1.94         2.01        12.92         5.46         5.19 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A2I1 TCGA-DK-A2I4 
       31.40         8.98       100.47         7.17        10.59       123.85 
TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-FD-A3B6 TCGA-FD-A3N6 TCGA-FD-A3SQ TCGA-FD-A43N 
       41.03        17.98         6.87         7.96        46.78         7.89 
TCGA-FT-A3EE TCGA-G2-A2EK TCGA-G2-A2ES TCGA-G2-A3VY TCGA-GC-A3I6 TCGA-GC-A3RB 
        3.22         5.65        17.26         0.82         2.24         4.50 
TCGA-GC-A3WC TCGA-GD-A3OP TCGA-GD-A3OS TCGA-GV-A3JV TCGA-GV-A3JZ TCGA-GV-A3QF 
        2.50         2.10         5.82         4.37         5.69         7.63 
TCGA-GV-A3QH TCGA-GV-A3QI 
        7.79         4.11 

$`8Q GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20O TCGA-BT-A20P 
        7.33         2.66         6.58        11.93        12.16        17.85 
TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A2LA TCGA-BT-A2LD 
       19.46         5.06        14.89         8.61         5.88         3.65 
TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YO 
        4.64         8.98         0.46         0.43         0.69         4.90 
TCGA-CU-A0YR TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1AA TCGA-DK-A1AB 
        7.20         8.09         2.53         2.14         7.04         8.91 
TCGA-DK-A1AC TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I2 TCGA-DK-A2I6 
      118.88         5.85         6.64         1.81         7.76        75.32 
TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS 
        2.20         3.98         7.82         8.22        10.49        37.84 
TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY 
        5.52        11.51         9.67         8.28        10.55       131.15 
TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B7 
       36.43         0.10         8.81         8.32         8.94         4.01 
TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM 
       11.05         8.94        32.02        24.30        10.98         6.12 
TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43U 
        6.81         5.49         4.54        19.79         1.94         6.84 
TCGA-FJ-A3Z7 TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EL 
       15.16         3.48         4.08        49.91        26.50        26.93 
TCGA-G2-A2EO TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3BM TCGA-GC-A3OO TCGA-GC-A3RC 
       32.78         7.04        20.12         2.86         1.32         1.38 
TCGA-GC-A3RD TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OQ TCGA-GU-A42P TCGA-GU-A42Q 
        1.02         1.08         7.69         3.12         6.38         7.56 
TCGA-GU-A42R TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G 
        3.22         6.41         6.15         6.64         6.38         5.33 
TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        1.51         6.71         8.71         3.42         4.64 

      8Q GAIN CNV 8Q GAIN WILD-TYPE 
             0.82              0.10 
      8Q GAIN CNV 8Q GAIN WILD-TYPE 
           123.85            131.15 
      8Q GAIN CNV 8Q GAIN WILD-TYPE 
             7.40              6.84 
[1] "0.8 - 123.8 (7.4)" "0.1 - 131.2 (6.8)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D16V2, continuous
D16V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN CNV         10   31
  8Q GAIN WILD-TYPE   24   69
        clus
vv       8Q GAIN CNV 8Q GAIN WILD-TYPE
  FEMALE          10                24
  MALE            31                69
D16V4, continuous
D16V5, continuous
                   vv
clus                M0 M1 MX
  8Q GAIN CNV       24  0 16
  8Q GAIN WILD-TYPE 53  5 35
D16V6, multiclass
    clus
vv   8Q GAIN CNV 8Q GAIN WILD-TYPE
  M0          24                53
  M1           0                 5
  MX          16                35
                   vv
clus                N0 N1 N2 N3 NX
  8Q GAIN CNV       24  3  9  1  3
  8Q GAIN WILD-TYPE 51 11 18  4  7
D16V7, multiclass
D16V8, continuous
D16V9, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  8Q GAIN CNV             1       13        14       12
  8Q GAIN WILD-TYPE       0       23        30       36
D16V10, multiclass
           clus
vv          8Q GAIN CNV 8Q GAIN WILD-TYPE
  STAGE I             1                 0
  STAGE II           13                23
  STAGE III          14                30
  STAGE IV           12                36

Clustering(17) Variable = 9p gain
D17V1, survival
                   sevent
clus2                0  1
  9P GAIN CNV       12  1
  9P GAIN WILD-TYPE 81 33
      9P GAIN CNV 9P GAIN WILD-TYPE 
               13               114 
      9P GAIN CNV 9P GAIN WILD-TYPE 
                1                33 
$`9P GAIN CNV`
TCGA-BL-A0C8 TCGA-BL-A3JM TCGA-BT-A2LA TCGA-CU-A3QU TCGA-DK-A1AC TCGA-DK-A1AD 
       12.79         6.74         5.88         5.19       118.88       100.47 
TCGA-DK-A3IM TCGA-FD-A3N5 TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-GC-A3I6 TCGA-GV-A3JZ 
        7.82         8.94        49.91        26.50         2.24         5.69 
TCGA-GV-A3QI 
        4.11 

$`9P GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N 
        7.33         2.66         6.58        11.93        19.00        26.10 
TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U 
       12.16        17.85        19.46         5.06        14.89         8.61 
TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ 
        5.06         8.35         8.25         3.65         4.64         8.98 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN 
        1.94         2.01         0.46         0.43         0.69        12.92 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 
        4.90         7.20         5.46         8.09         2.53         2.14 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AE TCGA-DK-A1AF 
       31.40         8.98         7.04         8.91         7.17         5.85 
TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 
        6.64         1.81        10.59         7.76       123.85        75.32 
TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT 
        2.20         3.98         8.22        10.49        37.84         5.52 
TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 
       11.51         9.67         8.28        10.55       131.15        41.03 
TCGA-DK-A3X2 TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 
       17.98        36.43         0.10         8.81         8.32         8.94 
TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ 
        6.87         4.01        11.05         7.96        32.02        24.30 
TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ 
       10.98         6.12         6.81         5.49         4.54        46.78 
TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZE 
       19.79         1.94         7.89         6.84        15.16         3.48 
TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES 
        4.08         3.22         5.65        26.93        32.78        17.26 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3OO TCGA-GC-A3RB 
        7.04        20.12         0.82         2.86         1.32         4.50 
TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP 
        1.38         1.02         2.50         1.08         7.69         2.10 
TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV 
        3.12         5.82         6.38         7.56         3.22         4.37 
TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QK TCGA-GV-A40E 
        6.41         6.15         7.63         7.79         6.64         6.38 
TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        5.33         1.51         6.71         8.71         3.42         4.64 

      9P GAIN CNV 9P GAIN WILD-TYPE 
             2.24              0.10 
      9P GAIN CNV 9P GAIN WILD-TYPE 
           118.88            131.15 
      9P GAIN CNV 9P GAIN WILD-TYPE 
            7.820             6.955 
[1] "2.2 - 118.9 (7.8)" "0.1 - 131.2 (7.0)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV"       "9P GAIN CNV" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
      "9P GAIN CNV"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV"       "9P GAIN CNV" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
      "9P GAIN CNV"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV"       "9P GAIN CNV" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
      "9P GAIN CNV"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
[1] "hr=" "6.4"
D17V2, continuous
D17V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN CNV          1   12
  9P GAIN WILD-TYPE   33   88
        clus
vv       9P GAIN CNV 9P GAIN WILD-TYPE
  FEMALE           1                33
  MALE            12                88
D17V4, continuous
D17V5, continuous
                   vv
clus                M0 M1 MX
  9P GAIN CNV       10  0  3
  9P GAIN WILD-TYPE 67  5 48
D17V6, multiclass
    clus
vv   9P GAIN CNV 9P GAIN WILD-TYPE
  M0          10                67
  M1           0                 5
  MX           3                48
                   vv
clus                N0 N1 N2 N3 NX
  9P GAIN CNV        9  1  1  1  1
  9P GAIN WILD-TYPE 66 13 26  4  9
D17V7, multiclass
D17V8, continuous
D17V9, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  9P GAIN CNV             1        3         6        3
  9P GAIN WILD-TYPE       0       33        38       45
D17V10, multiclass
           clus
vv          9P GAIN CNV 9P GAIN WILD-TYPE
  STAGE I             1                 0
  STAGE II            3                33
  STAGE III           6                38
  STAGE IV            3                45

Clustering(18) Variable = 9q gain
D18V1, survival
                   sevent
clus2                0  1
  9Q GAIN CNV       11  1
  9Q GAIN WILD-TYPE 82 33
      9Q GAIN CNV 9Q GAIN WILD-TYPE 
               12               115 
      9Q GAIN CNV 9Q GAIN WILD-TYPE 
                1                33 
$`9Q GAIN CNV`
TCGA-BL-A0C8 TCGA-BL-A3JM TCGA-BT-A2LA TCGA-C4-A0F0 TCGA-DK-A1AC TCGA-DK-A2I1 
       12.79         6.74         5.88         1.94       118.88        10.59 
TCGA-DK-A3IM TCGA-FD-A3B4 TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-GC-A3I6 TCGA-GC-A3WC 
        7.82         8.32        49.91        26.50         2.24         2.50 

$`9Q GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N 
        7.33         2.66         6.58        11.93        19.00        26.10 
TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U 
       12.16        17.85        19.46         5.06        14.89         8.61 
TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ 
        5.06         8.35         8.25         3.65         4.64         8.98 
TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO 
        2.01         0.46         0.43         0.69        12.92         4.90 
TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 
        7.20         5.46         5.19         8.09         2.53         2.14 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AD TCGA-DK-A1AE 
       31.40         8.98         7.04         8.91       100.47         7.17 
TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 
        5.85         6.64         1.81         7.76       123.85        75.32 
TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT 
        2.20         3.98         8.22        10.49        37.84         5.52 
TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 
       11.51         9.67         8.28        10.55       131.15        41.03 
TCGA-DK-A3X2 TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B5 TCGA-FD-A3B6 
       17.98        36.43         0.10         8.81         8.94         6.87 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ 
        4.01        11.05         8.94         7.96        32.02        24.30 
TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ 
       10.98         6.12         6.81         5.49         4.54        46.78 
TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZE 
       19.79         1.94         7.89         6.84        15.16         3.48 
TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES 
        4.08         3.22         5.65        26.93        32.78        17.26 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3OO TCGA-GC-A3RB 
        7.04        20.12         0.82         2.86         1.32         4.50 
TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ 
        1.38         1.02         1.08         7.69         2.10         3.12 
TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW 
        5.82         6.38         7.56         3.22         4.37         6.41 
TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK 
        6.15         5.69         7.63         7.79         4.11         6.64 
TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU 
        6.38         5.33         1.51         6.71         8.71         3.42 
TCGA-K4-A3WV 
        4.64 

      9Q GAIN CNV 9Q GAIN WILD-TYPE 
             1.94              0.10 
      9Q GAIN CNV 9Q GAIN WILD-TYPE 
           118.88            131.15 
      9Q GAIN CNV 9Q GAIN WILD-TYPE 
             8.07              6.87 
[1] "1.9 - 118.9 (8.1)" "0.1 - 131.2 (6.9)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
      "9Q GAIN CNV"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
      "9Q GAIN CNV"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
      "9Q GAIN CNV"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
[1] "hr=" "4.9"
D18V2, continuous
D18V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN CNV          4    8
  9Q GAIN WILD-TYPE   30   92
        clus
vv       9Q GAIN CNV 9Q GAIN WILD-TYPE
  FEMALE           4                30
  MALE             8                92
D18V4, continuous
D18V5, continuous
                   vv
clus                M0 M1 MX
  9Q GAIN CNV       10  0  2
  9Q GAIN WILD-TYPE 67  5 49
D18V6, multiclass
    clus
vv   9Q GAIN CNV 9Q GAIN WILD-TYPE
  M0          10                67
  M1           0                 5
  MX           2                49
                   vv
clus                N0 N1 N2 N3 NX
  9Q GAIN CNV       11  0  0  0  1
  9Q GAIN WILD-TYPE 64 14 27  5  9
D18V7, multiclass
D18V8, continuous
D18V9, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  9Q GAIN CNV             1        4         7        0
  9Q GAIN WILD-TYPE       0       32        37       48
D18V10, multiclass
           clus
vv          9Q GAIN CNV 9Q GAIN WILD-TYPE
  STAGE I             1                 0
  STAGE II            4                32
  STAGE III           7                37
  STAGE IV            0                48

Clustering(19) Variable = 10p gain
D19V1, survival
                    sevent
clus2                 0  1
  10P GAIN CNV       14  8
  10P GAIN WILD-TYPE 79 26
      10P GAIN CNV 10P GAIN WILD-TYPE 
                22                105 
      10P GAIN CNV 10P GAIN WILD-TYPE 
                 8                 26 
$`10P GAIN CNV`
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BT-A20N TCGA-BT-A20R TCGA-BT-A20V TCGA-CF-A1HS 
       12.79         2.66        26.10         5.06         5.06         0.43 
TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1AD TCGA-DK-A2I6 TCGA-DK-A3IL 
        2.53         2.14        31.40       100.47        75.32         3.98 
TCGA-DK-A3IN TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FT-A3EE TCGA-G2-A2ES TCGA-GC-A3RB 
        8.22        32.02        24.30         3.22        17.26         4.50 
TCGA-GU-A42P TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A40E 
        6.38         5.69         7.63         6.38 

$`10P GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20O 
        7.33         6.74         6.58        11.93        19.00        12.16 
TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A20X 
       17.85        19.46        14.89         8.61         8.35         8.25 
TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 
        5.88         3.65         4.64         8.98         1.94         2.01 
TCGA-CF-A1HR TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ 
        0.46         0.69        12.92         4.90         7.20         5.46 
TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC 
        5.19         8.09         8.98         7.04         8.91       118.88 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 
        7.17         5.85         6.64         1.81        10.59         7.76 
TCGA-DK-A2I4 TCGA-DK-A3IK TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT 
      123.85         2.20         7.82        10.49        37.84         5.52 
TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 
       11.51         9.67         8.28        10.55       131.15        41.03 
TCGA-DK-A3X2 TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 
       17.98        36.43         0.10         8.81         8.32         8.94 
TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3SL 
        6.87         4.01        11.05         8.94         7.96        10.98 
TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR 
        6.12         6.81         5.49         4.54        46.78        19.79 
TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZE TCGA-FJ-A3ZF 
        1.94         7.89         6.84        15.16         3.48         4.08 
TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A3IB 
       49.91        26.50         5.65        26.93        32.78         7.04 
TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RC 
       20.12         0.82         2.86         2.24         1.32         1.38 
TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ 
        1.02         2.50         1.08         7.69         2.10         3.12 
TCGA-GD-A3OS TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX 
        5.82         7.56         3.22         4.37         6.41         6.15 
TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ 
        7.79         4.11         6.64         5.33         1.51         6.71 
TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        8.71         3.42         4.64 

      10P GAIN CNV 10P GAIN WILD-TYPE 
              0.43               0.10 
      10P GAIN CNV 10P GAIN WILD-TYPE 
            100.47             131.15 
      10P GAIN CNV 10P GAIN WILD-TYPE 
              6.38               7.04 
[1] "0.4 - 100.5 (6.4)" "0.1 - 131.2 (7.0)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
      "10P GAIN CNV" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
      "10P GAIN CNV"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
      "10P GAIN CNV"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"10P GAIN WILD-TYPE"       "10P GAIN CNV"       "10P GAIN CNV" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"10P GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
      "10P GAIN CNV" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
      "10P GAIN CNV"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
      "10P GAIN CNV"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"10P GAIN WILD-TYPE"       "10P GAIN CNV"       "10P GAIN CNV" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"10P GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
      "10P GAIN CNV" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
      "10P GAIN CNV"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
      "10P GAIN CNV"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"10P GAIN WILD-TYPE"       "10P GAIN CNV"       "10P GAIN CNV" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"10P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D19V2, continuous
D19V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN CNV          5   20
  10P GAIN WILD-TYPE   29   80
        clus
vv       10P GAIN CNV 10P GAIN WILD-TYPE
  FEMALE            5                 29
  MALE             20                 80
D19V4, continuous
D19V5, continuous
                    vv
clus                 M0 M1 MX
  10P GAIN CNV       17  0  8
  10P GAIN WILD-TYPE 60  5 43
D19V6, multiclass
    clus
vv   10P GAIN CNV 10P GAIN WILD-TYPE
  M0           17                 60
  M1            0                  5
  MX            8                 43
                    vv
clus                 N0 N1 N2 N3 NX
  10P GAIN CNV       10  4  8  1  2
  10P GAIN WILD-TYPE 65 10 19  4  8
D19V7, multiclass
D19V8, continuous
D19V9, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  10P GAIN CNV             1        5         5       12
  10P GAIN WILD-TYPE       0       31        39       36
D19V10, multiclass
           clus
vv          10P GAIN CNV 10P GAIN WILD-TYPE
  STAGE I              1                  0
  STAGE II             5                 31
  STAGE III            5                 39
  STAGE IV            12                 36

Clustering(20) Variable = 10q gain
D20V1, survival
                    sevent
clus2                 0  1
  10Q GAIN CNV        3  2
  10Q GAIN WILD-TYPE 90 32
      10Q GAIN CNV 10Q GAIN WILD-TYPE 
                 5                122 
      10Q GAIN CNV 10Q GAIN WILD-TYPE 
                 2                 32 
$`10Q GAIN CNV`
TCGA-BT-A20R TCGA-BT-A20V TCGA-DK-A1A3 TCGA-DK-A1A6 TCGA-GC-A3RB 
        5.06         5.06         2.53        31.40         4.50 

$`10Q GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20T 
       19.00        26.10        12.16        17.85        19.46        14.89 
TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH 
        8.61         8.35         8.25         5.88         3.65         4.64 
TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C 
        8.98         1.94         2.01         0.46         0.43         0.69 
TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL 
       12.92         4.90         7.20         5.46         5.19         8.09 
TCGA-DK-A1A5 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD 
        2.14         8.98         7.04         8.91       118.88       100.47 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 
        7.17         5.85         6.64         1.81        10.59         7.76 
TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN 
      123.85        75.32         2.20         3.98         7.82         8.22 
TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW 
       10.49        37.84         5.52        11.51         9.67         8.28 
TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-E5-A2PC TCGA-E7-A3Y1 
       10.55       131.15        41.03        17.98        36.43         0.10 
TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 
        8.81         8.32         8.94         6.87         4.01        11.05 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM 
        8.94         7.96        32.02        24.30        10.98         6.12 
TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS 
        6.81         5.49         4.54        46.78        19.79         1.94 
TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-FT-A3EE 
        7.89         6.84        15.16         3.48         4.08         3.22 
TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES 
       49.91        26.50         5.65        26.93        32.78        17.26 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO 
        7.04        20.12         0.82         2.86         2.24         1.32 
TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP 
        1.38         1.02         2.50         1.08         7.69         2.10 
TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV 
        3.12         5.82         6.38         7.56         3.22         4.37 
TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI 
        6.41         6.15         5.69         7.63         7.79         4.11 
TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS 
        6.64         6.38         5.33         1.51         6.71         8.71 
TCGA-K4-A3WU TCGA-K4-A3WV 
        3.42         4.64 

      10Q GAIN CNV 10Q GAIN WILD-TYPE 
              2.53               0.10 
      10Q GAIN CNV 10Q GAIN WILD-TYPE 
             31.40             131.15 
      10Q GAIN CNV 10Q GAIN WILD-TYPE 
             5.060              7.105 
[1] "2.5 - 31.4 (5.1)"  "0.1 - 131.2 (7.1)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"10Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"10Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"10Q GAIN WILD-TYPE" 
[1] "hr=" "1.8"
D20V2, continuous
D20V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN CNV          2    5
  10Q GAIN WILD-TYPE   32   95
        clus
vv       10Q GAIN CNV 10Q GAIN WILD-TYPE
  FEMALE            2                 32
  MALE              5                 95
D20V4, continuous
[1] "Remove cluster labels:" "10Q GAIN CNV"          
clus
      10Q GAIN CNV 10Q GAIN WILD-TYPE 
                 1                 37 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CF-A3MG 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CF-A3MH         TCGA-CF-A3MI         TCGA-DK-A2HX 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IV         TCGA-DK-A3WX 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A3X2         TCGA-E5-A2PC         TCGA-G2-A2EF 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-G2-A2EJ         TCGA-G2-A2EK         TCGA-G2-A2EL 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-G2-A2EO         TCGA-G2-A2ES         TCGA-G2-A3IB 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-G2-A3IE         TCGA-G2-A3VY         TCGA-GC-A3BM 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GC-A3I6         TCGA-GC-A3OO         TCGA-GC-A3RC 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3YS         TCGA-GD-A3OS 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GV-A3JV         TCGA-GV-A3JW         TCGA-GV-A3JX 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GV-A3JZ         TCGA-GV-A3QF         TCGA-GV-A3QH 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-GV-A3QK         TCGA-GV-A40E 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GV-A40G 
"10Q GAIN WILD-TYPE" 
D20V5, continuous
                    vv
clus                 M0 M1 MX
  10Q GAIN CNV        6  0  1
  10Q GAIN WILD-TYPE 71  5 50
D20V6, multiclass
    clus
vv   10Q GAIN CNV 10Q GAIN WILD-TYPE
  M0            6                 71
  M1            0                  5
  MX            1                 50
                    vv
clus                 N0 N1 N2 N3 NX
  10Q GAIN CNV        2  2  3  0  0
  10Q GAIN WILD-TYPE 73 12 24  5 10
D20V7, multiclass
D20V8, continuous
D20V9, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  10Q GAIN CNV             0        0         2        4
  10Q GAIN WILD-TYPE       1       36        42       44
D20V10, multiclass
           clus
vv          10Q GAIN CNV 10Q GAIN WILD-TYPE
  STAGE I              0                  1
  STAGE II             0                 36
  STAGE III            2                 42
  STAGE IV             4                 44

Clustering(21) Variable = 11p gain
D21V1, survival
                    sevent
clus2                 0  1
  11P GAIN CNV        4  2
  11P GAIN WILD-TYPE 89 32
      11P GAIN CNV 11P GAIN WILD-TYPE 
                 6                121 
      11P GAIN CNV 11P GAIN WILD-TYPE 
                 2                 32 
$`11P GAIN CNV`
TCGA-BL-A13J TCGA-DK-A3IV TCGA-FD-A3B6 TCGA-GC-A3RC TCGA-GV-A3JZ TCGA-GV-A3QI 
        2.66         9.67         6.87         1.38         5.69         4.11 

$`11P GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J 
       12.79         7.33         6.74         6.58        11.93        19.00 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T 
       26.10        12.16        17.85        19.46         5.06        14.89 
TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD 
        8.61         5.06         8.35         8.25         5.88         3.65 
TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS 
        4.64         8.98         1.94         2.01         0.46         0.43 
TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU 
        0.69        12.92         4.90         7.20         5.46         5.19 
TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA 
        8.09         2.53         2.14        31.40         8.98         7.04 
TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
        8.91       118.88       100.47         7.17         5.85         6.64 
TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK 
        1.81        10.59         7.76       123.85        75.32         2.20 
TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT 
        3.98         7.82         8.22        10.49        37.84         5.52 
TCGA-DK-A3IU TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 
       11.51         8.28        10.55       131.15        41.03        17.98 
TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B7 
       36.43         0.10         8.81         8.32         8.94         4.01 
TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL 
       11.05         8.94         7.96        32.02        24.30        10.98 
TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR 
        6.12         6.81         5.49         4.54        46.78        19.79 
TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZE TCGA-FJ-A3ZF 
        1.94         7.89         6.84        15.16         3.48         4.08 
TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
        3.22        49.91        26.50         5.65        26.93        32.78 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 
       17.26         7.04        20.12         0.82         2.86         2.24 
TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 
        1.32         4.50         1.02         2.50         1.08         7.69 
TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R 
        2.10         3.12         5.82         6.38         7.56         3.22 
TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QK 
        4.37         6.41         6.15         7.63         7.79         6.64 
TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU 
        6.38         5.33         1.51         6.71         8.71         3.42 
TCGA-K4-A3WV 
        4.64 

      11P GAIN CNV 11P GAIN WILD-TYPE 
              1.38               0.10 
      11P GAIN CNV 11P GAIN WILD-TYPE 
              9.67             131.15 
      11P GAIN CNV 11P GAIN WILD-TYPE 
              4.90               7.17 
[1] "1.4 - 9.7 (4.9)"   "0.1 - 131.2 (7.2)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"11P GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"11P GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"11P GAIN WILD-TYPE" 
[1] "hr=" "3.7"
D21V2, continuous
D21V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN CNV          0    6
  11P GAIN WILD-TYPE   34   94
        clus
vv       11P GAIN CNV 11P GAIN WILD-TYPE
  FEMALE            0                 34
  MALE              6                 94
D21V4, continuous
D21V5, continuous
                    vv
clus                 M0 M1 MX
  11P GAIN CNV        3  0  3
  11P GAIN WILD-TYPE 74  5 48
D21V6, multiclass
    clus
vv   11P GAIN CNV 11P GAIN WILD-TYPE
  M0            3                 74
  M1            0                  5
  MX            3                 48
                    vv
clus                 N0 N1 N2 N3 NX
  11P GAIN CNV        3  0  1  1  1
  11P GAIN WILD-TYPE 72 14 26  4  9
D21V7, multiclass
D21V8, continuous
D21V9, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  11P GAIN CNV             0        3         1        2
  11P GAIN WILD-TYPE       1       33        43       46
D21V10, multiclass
           clus
vv          11P GAIN CNV 11P GAIN WILD-TYPE
  STAGE I              0                  1
  STAGE II             3                 33
  STAGE III            1                 43
  STAGE IV             2                 46

Clustering(22) Variable = 11q gain
D22V1, survival
                    sevent
clus2                 0  1
  11Q GAIN CNV        6  2
  11Q GAIN WILD-TYPE 87 32
      11Q GAIN CNV 11Q GAIN WILD-TYPE 
                 8                119 
      11Q GAIN CNV 11Q GAIN WILD-TYPE 
                 2                 32 
$`11Q GAIN CNV`
TCGA-BL-A13J TCGA-DK-A1A3 TCGA-DK-A3X2 TCGA-FD-A3B6 TCGA-GC-A3I6 TCGA-GC-A3RC 
        2.66         2.53        17.98         6.87         2.24         1.38 
TCGA-GV-A3JZ TCGA-GV-A3QF 
        5.69         7.63 

$`11Q GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J 
       12.79         7.33         6.74         6.58        11.93        19.00 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T 
       26.10        12.16        17.85        19.46         5.06        14.89 
TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD 
        8.61         5.06         8.35         8.25         5.88         3.65 
TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS 
        4.64         8.98         1.94         2.01         0.46         0.43 
TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU 
        0.69        12.92         4.90         7.20         5.46         5.19 
TCGA-CU-A3YL TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB 
        8.09         2.14        31.40         8.98         7.04         8.91 
TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX 
      118.88       100.47         7.17         5.85         6.64         1.81 
TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL 
       10.59         7.76       123.85        75.32         2.20         3.98 
TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU 
        7.82         8.22        10.49        37.84         5.52        11.51 
TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-E5-A2PC 
        9.67         8.28        10.55       131.15        41.03        36.43 
TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B7 TCGA-FD-A3B8 
        0.10         8.81         8.32         8.94         4.01        11.05 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM 
        8.94         7.96        32.02        24.30        10.98         6.12 
TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS 
        6.81         5.49         4.54        46.78        19.79         1.94 
TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-FT-A3EE 
        7.89         6.84        15.16         3.48         4.08         3.22 
TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES 
       49.91        26.50         5.65        26.93        32.78        17.26 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3OO TCGA-GC-A3RB 
        7.04        20.12         0.82         2.86         1.32         4.50 
TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ 
        1.02         2.50         1.08         7.69         2.10         3.12 
TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW 
        5.82         6.38         7.56         3.22         4.37         6.41 
TCGA-GV-A3JX TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G 
        6.15         7.79         4.11         6.64         6.38         5.33 
TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        1.51         6.71         8.71         3.42         4.64 

      11Q GAIN CNV 11Q GAIN WILD-TYPE 
              1.38               0.10 
      11Q GAIN CNV 11Q GAIN WILD-TYPE 
             17.98             131.15 
      11Q GAIN CNV 11Q GAIN WILD-TYPE 
             4.175              7.170 
[1] "1.4 - 18.0 (4.2)"  "0.1 - 131.2 (7.2)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV"       "11Q GAIN CNV" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"11Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV"       "11Q GAIN CNV" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"11Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV"       "11Q GAIN CNV" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"11Q GAIN WILD-TYPE" 
[1] "hr=" "2.2"
D22V2, continuous
D22V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN CNV          0    8
  11Q GAIN WILD-TYPE   34   92
        clus
vv       11Q GAIN CNV 11Q GAIN WILD-TYPE
  FEMALE            0                 34
  MALE              8                 92
D22V4, continuous
D22V5, continuous
                    vv
clus                 M0 M1 MX
  11Q GAIN CNV        5  0  3
  11Q GAIN WILD-TYPE 72  5 48
D22V6, multiclass
    clus
vv   11Q GAIN CNV 11Q GAIN WILD-TYPE
  M0            5                 72
  M1            0                  5
  MX            3                 48
                    vv
clus                 N0 N1 N2 N3 NX
  11Q GAIN CNV        3  0  4  1  0
  11Q GAIN WILD-TYPE 72 14 23  4 10
D22V7, multiclass
D22V8, continuous
D22V9, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  11Q GAIN CNV             0        2         1        5
  11Q GAIN WILD-TYPE       1       34        43       43
D22V10, multiclass
           clus
vv          11Q GAIN CNV 11Q GAIN WILD-TYPE
  STAGE I              0                  1
  STAGE II             2                 34
  STAGE III            1                 43
  STAGE IV             5                 43

Clustering(23) Variable = 12p gain
D23V1, survival
                    sevent
clus2                 0  1
  12P GAIN CNV       17  6
  12P GAIN WILD-TYPE 76 28
      12P GAIN CNV 12P GAIN WILD-TYPE 
                23                104 
      12P GAIN CNV 12P GAIN WILD-TYPE 
                 6                 28 
$`12P GAIN CNV`
TCGA-BL-A0C8 TCGA-BL-A3JM TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20P TCGA-BT-A20V 
       12.79         6.74        19.00        26.10        17.85         5.06 
TCGA-BT-A2LD TCGA-CU-A0YN TCGA-CU-A0YR TCGA-DK-A1A6 TCGA-DK-A3IM TCGA-DK-A3X1 
        3.65        12.92         7.20        31.40         7.82        41.03 
TCGA-FD-A3B6 TCGA-FD-A3NA TCGA-G2-A3VY TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RD 
        6.87        32.02         0.82         2.24         1.32         1.02 
TCGA-GV-A3JZ TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40G TCGA-K4-A3WV 
        5.69         4.11         6.64         5.33         4.64 

$`12P GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20O TCGA-BT-A20Q 
        7.33         2.66         6.58        11.93        12.16        19.46 
TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
        5.06        14.89         8.61         8.35         8.25         5.88 
TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS 
        4.64         8.98         1.94         2.01         0.46         0.43 
TCGA-CF-A27C TCGA-CU-A0YO TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 
        0.69         4.90         5.46         5.19         8.09         2.53 
TCGA-DK-A1A5 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD 
        2.14         8.98         7.04         8.91       118.88       100.47 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 
        7.17         5.85         6.64         1.81        10.59         7.76 
TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IN TCGA-DK-A3IQ 
      123.85        75.32         2.20         3.98         8.22        10.49 
TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX 
       37.84         5.52        11.51         9.67         8.28        10.55 
TCGA-DK-A3WY TCGA-DK-A3X2 TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 
      131.15        17.98        36.43         0.10         8.81         8.32 
TCGA-FD-A3B5 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3SJ 
        8.94         4.01        11.05         8.94         7.96        24.30 
TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ 
       10.98         6.12         6.81         5.49         4.54        46.78 
TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZE 
       19.79         1.94         7.89         6.84        15.16         3.48 
TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL 
        4.08         3.22        49.91        26.50         5.65        26.93 
TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3BM TCGA-GC-A3RB 
       32.78        17.26         7.04        20.12         2.86         4.50 
TCGA-GC-A3RC TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ 
        1.38         2.50         1.08         7.69         2.10         3.12 
TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW 
        5.82         6.38         7.56         3.22         4.37         6.41 
TCGA-GV-A3JX TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A40E TCGA-H4-A2HO TCGA-H4-A2HQ 
        6.15         7.63         7.79         6.38         1.51         6.71 
TCGA-K4-A3WS TCGA-K4-A3WU 
        8.71         3.42 

      12P GAIN CNV 12P GAIN WILD-TYPE 
              0.82               0.10 
      12P GAIN CNV 12P GAIN WILD-TYPE 
             41.03             131.15 
      12P GAIN CNV 12P GAIN WILD-TYPE 
             6.740              7.105 
[1] "0.8 - 41.0 (6.7)"  "0.1 - 131.2 (7.1)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
      "12P GAIN CNV" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
      "12P GAIN CNV" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
      "12P GAIN CNV" 
[1] "hr=" "1.1"
D23V2, continuous
D23V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN CNV          7   18
  12P GAIN WILD-TYPE   27   82
        clus
vv       12P GAIN CNV 12P GAIN WILD-TYPE
  FEMALE            7                 27
  MALE             18                 82
D23V4, continuous
D23V5, continuous
                    vv
clus                 M0 M1 MX
  12P GAIN CNV       15  0  9
  12P GAIN WILD-TYPE 62  5 42
D23V6, multiclass
    clus
vv   12P GAIN CNV 12P GAIN WILD-TYPE
  M0           15                 62
  M1            0                  5
  MX            9                 42
                    vv
clus                 N0 N1 N2 N3 NX
  12P GAIN CNV       16  2  4  1  1
  12P GAIN WILD-TYPE 59 12 23  4  9
D23V7, multiclass
D23V8, continuous
D23V9, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  12P GAIN CNV             1        8         9        6
  12P GAIN WILD-TYPE       0       28        35       42
D23V10, multiclass
           clus
vv          12P GAIN CNV 12P GAIN WILD-TYPE
  STAGE I              1                  0
  STAGE II             8                 28
  STAGE III            9                 35
  STAGE IV             6                 42

Clustering(24) Variable = 12q gain
D24V1, survival
                    sevent
clus2                 0  1
  12Q GAIN CNV       11  4
  12Q GAIN WILD-TYPE 82 30
      12Q GAIN CNV 12Q GAIN WILD-TYPE 
                15                112 
      12Q GAIN CNV 12Q GAIN WILD-TYPE 
                 4                 30 
$`12Q GAIN CNV`
TCGA-BL-A0C8 TCGA-BL-A3JM TCGA-BT-A20J TCGA-BT-A20P TCGA-CU-A0YR TCGA-DK-A1A5 
       12.79         6.74        19.00        17.85         7.20         2.14 
TCGA-DK-A1A6 TCGA-DK-A1AC TCGA-DK-A3X1 TCGA-FD-A3B6 TCGA-FD-A3NA TCGA-G2-A2EF 
       31.40       118.88        41.03         6.87        32.02        49.91 
TCGA-G2-A3VY TCGA-GC-A3I6 TCGA-GV-A3QK 
        0.82         2.24         6.64 

$`12Q GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20N TCGA-BT-A20O 
        7.33         2.66         6.58        11.93        26.10        12.16 
TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W 
       19.46         5.06        14.89         8.61         5.06         8.35 
TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 
        8.25         5.88         3.65         4.64         8.98         1.94 
TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO 
        2.01         0.46         0.43         0.69        12.92         4.90 
TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A7 TCGA-DK-A1AA 
        5.46         5.19         8.09         2.53         8.98         7.04 
TCGA-DK-A1AB TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX 
        8.91       100.47         7.17         5.85         6.64         1.81 
TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL 
       10.59         7.76       123.85        75.32         2.20         3.98 
TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU 
        7.82         8.22        10.49        37.84         5.52        11.51 
TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X2 TCGA-E5-A2PC 
        9.67         8.28        10.55       131.15        17.98        36.43 
TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B7 TCGA-FD-A3B8 
        0.10         8.81         8.32         8.94         4.01        11.05 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN 
        8.94         7.96        24.30        10.98         6.12         6.81 
TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N 
        5.49         4.54        46.78        19.79         1.94         7.89 
TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-G2-A2EJ 
        6.84        15.16         3.48         4.08         3.22        26.50 
TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE 
        5.65        26.93        32.78        17.26         7.04        20.12 
TCGA-GC-A3BM TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC 
        2.86         1.32         4.50         1.38         1.02         2.50 
TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P 
        1.08         7.69         2.10         3.12         5.82         6.38 
TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ 
        7.56         3.22         4.37         6.41         6.15         5.69 
TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO 
        7.63         7.79         4.11         6.38         5.33         1.51 
TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        6.71         8.71         3.42         4.64 

      12Q GAIN CNV 12Q GAIN WILD-TYPE 
              0.82               0.10 
      12Q GAIN CNV 12Q GAIN WILD-TYPE 
            118.88             131.15 
      12Q GAIN CNV 12Q GAIN WILD-TYPE 
            12.790              6.825 
[1] "0.8 - 118.9 (12.8)" "0.1 - 131.2 (6.8)" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
      "12Q GAIN CNV"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"12Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
      "12Q GAIN CNV"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"12Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
      "12Q GAIN CNV"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"12Q GAIN WILD-TYPE" 
[1] "hr=" "2"  
D24V2, continuous
D24V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN CNV          3   15
  12Q GAIN WILD-TYPE   31   85
        clus
vv       12Q GAIN CNV 12Q GAIN WILD-TYPE
  FEMALE            3                 31
  MALE             15                 85
D24V4, continuous
D24V5, continuous
                    vv
clus                 M0 M1 MX
  12Q GAIN CNV       13  0  4
  12Q GAIN WILD-TYPE 64  5 47
D24V6, multiclass
    clus
vv   12Q GAIN CNV 12Q GAIN WILD-TYPE
  M0           13                 64
  M1            0                  5
  MX            4                 47
                    vv
clus                 N0 N1 N2 N3 NX
  12Q GAIN CNV       12  1  3  0  1
  12Q GAIN WILD-TYPE 63 13 24  5  9
D24V7, multiclass
D24V8, continuous
D24V9, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  12Q GAIN CNV             1        7         6        3
  12Q GAIN WILD-TYPE       0       29        38       45
D24V10, multiclass
           clus
vv          12Q GAIN CNV 12Q GAIN WILD-TYPE
  STAGE I              1                  0
  STAGE II             7                 29
  STAGE III            6                 38
  STAGE IV             3                 45

Clustering(25) Variable = 13q gain
D25V1, survival
                    sevent
clus2                 0  1
  13Q GAIN CNV       14  6
  13Q GAIN WILD-TYPE 79 28
      13Q GAIN CNV 13Q GAIN WILD-TYPE 
                20                107 
      13Q GAIN CNV 13Q GAIN WILD-TYPE 
                 6                 28 
$`13Q GAIN CNV`
TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A20J TCGA-BT-A20Q TCGA-BT-A2LD TCGA-C4-A0EZ 
        6.74         6.58        19.00        19.46         3.65         8.98 
TCGA-CU-A0YN TCGA-CU-A3YL TCGA-DK-A2HX TCGA-DK-A3IL TCGA-DK-A3IU TCGA-DK-A3X1 
       12.92         8.09         1.81         3.98        11.51        41.03 
TCGA-FD-A3SM TCGA-G2-A2EF TCGA-G2-A2EK TCGA-GC-A3OO TCGA-GD-A3OS TCGA-GV-A3JX 
        6.12        49.91         5.65         1.32         5.82         6.15 
TCGA-GV-A3JZ TCGA-GV-A3QF 
        5.69         7.63 

$`13Q GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BT-A0YX TCGA-BT-A20N TCGA-BT-A20O 
       12.79         7.33         2.66        11.93        26.10        12.16 
TCGA-BT-A20P TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W 
       17.85         5.06        14.89         8.61         5.06         8.35 
TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A3PH TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR 
        8.25         5.88         4.64         1.94         2.01         0.46 
TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU 
        0.43         0.69         4.90         7.20         5.46         5.19 
TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB 
        2.53         2.14        31.40         8.98         7.04         8.91 
TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I1 
      118.88       100.47         7.17         5.85         6.64        10.59 
TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IM TCGA-DK-A3IN 
        7.76       123.85        75.32         2.20         7.82         8.22 
TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX 
       10.49        37.84         5.52         9.67         8.28        10.55 
TCGA-DK-A3WY TCGA-DK-A3X2 TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 
      131.15        17.98        36.43         0.10         8.81         8.32 
TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 
        8.94         6.87         4.01        11.05         8.94         7.96 
TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP 
       32.02        24.30        10.98         6.81         5.49         4.54 
TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 
       46.78        19.79         1.94         7.89         6.84        15.16 
TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-G2-A2EJ TCGA-G2-A2EL TCGA-G2-A2EO 
        3.48         4.08         3.22        26.50        26.93        32.78 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 
       17.26         7.04        20.12         0.82         2.86         2.24 
TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 
        4.50         1.38         1.02         2.50         1.08         7.69 
TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV 
        2.10         3.12         6.38         7.56         3.22         4.37 
TCGA-GV-A3JW TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G 
        6.41         7.79         4.11         6.64         6.38         5.33 
TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        1.51         6.71         8.71         3.42         4.64 

      13Q GAIN CNV 13Q GAIN WILD-TYPE 
              1.32               0.10 
      13Q GAIN CNV 13Q GAIN WILD-TYPE 
             49.91             131.15 
      13Q GAIN CNV 13Q GAIN WILD-TYPE 
              6.66               7.04 
[1] "1.3 - 49.9 (6.7)"  "0.1 - 131.2 (7.0)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
      "13Q GAIN CNV"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE"       "13Q GAIN CNV" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"       "13Q GAIN CNV" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
      "13Q GAIN CNV"       "13Q GAIN CNV"       "13Q GAIN CNV" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"13Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
      "13Q GAIN CNV"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE"       "13Q GAIN CNV" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"       "13Q GAIN CNV" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
      "13Q GAIN CNV"       "13Q GAIN CNV"       "13Q GAIN CNV" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"13Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
      "13Q GAIN CNV"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE"       "13Q GAIN CNV" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"       "13Q GAIN CNV" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
      "13Q GAIN CNV"       "13Q GAIN CNV"       "13Q GAIN CNV" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"13Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D25V2, continuous
D25V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN CNV          6   16
  13Q GAIN WILD-TYPE   28   84
        clus
vv       13Q GAIN CNV 13Q GAIN WILD-TYPE
  FEMALE            6                 28
  MALE             16                 84
D25V4, continuous
D25V5, continuous
                    vv
clus                 M0 M1 MX
  13Q GAIN CNV       13  2  7
  13Q GAIN WILD-TYPE 64  3 44
D25V6, multiclass
    clus
vv   13Q GAIN CNV 13Q GAIN WILD-TYPE
  M0           13                 64
  M1            2                  3
  MX            7                 44
                    vv
clus                 N0 N1 N2 N3 NX
  13Q GAIN CNV       12  2  5  2  1
  13Q GAIN WILD-TYPE 63 12 22  3  9
D25V7, multiclass
D25V8, continuous
D25V9, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  13Q GAIN CNV             0        7         6        9
  13Q GAIN WILD-TYPE       1       29        38       39
D25V10, multiclass
           clus
vv          13Q GAIN CNV 13Q GAIN WILD-TYPE
  STAGE I              0                  1
  STAGE II             7                 29
  STAGE III            6                 38
  STAGE IV             9                 39

Clustering(26) Variable = 14q gain
D26V1, survival
                    sevent
clus2                 0  1
  14Q GAIN CNV        8  3
  14Q GAIN WILD-TYPE 85 31
      14Q GAIN CNV 14Q GAIN WILD-TYPE 
                11                116 
      14Q GAIN CNV 14Q GAIN WILD-TYPE 
                 3                 31 
$`14Q GAIN CNV`
TCGA-C4-A0EZ TCGA-C4-A0F6 TCGA-CU-A0YN TCGA-DK-A3IT TCGA-FD-A3N5 TCGA-G2-A2EL 
        8.98         2.01        12.92         5.52         8.94        26.93 
TCGA-G2-A2EO TCGA-GC-A3I6 TCGA-GC-A3YS TCGA-GD-A3OS TCGA-K4-A3WV 
       32.78         2.24         1.08         5.82         4.64 

$`14Q GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
       14.89         8.61         5.06         8.35         8.25         5.88 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0F0 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C 
        3.65         4.64         1.94         0.46         0.43         0.69 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 
        4.90         7.20         5.46         5.19         8.09         2.53 
TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC 
        2.14        31.40         8.98         7.04         8.91       118.88 
TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 
      100.47         7.17         5.85         6.64         1.81        10.59 
TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM 
        7.76       123.85        75.32         2.20         3.98         7.82 
TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW 
        8.22        10.49        37.84        11.51         9.67         8.28 
TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-E5-A2PC TCGA-E7-A3Y1 
       10.55       131.15        41.03        17.98        36.43         0.10 
TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 
        8.81         8.32         8.94         6.87         4.01        11.05 
TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN 
        7.96        32.02        24.30        10.98         6.12         6.81 
TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N 
        5.49         4.54        46.78        19.79         1.94         7.89 
TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-G2-A2EF 
        6.84        15.16         3.48         4.08         3.22        49.91 
TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY 
       26.50         5.65        17.26         7.04        20.12         0.82 
TCGA-GC-A3BM TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC 
        2.86         1.32         4.50         1.38         1.02         2.50 
TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R 
        7.69         2.10         3.12         6.38         7.56         3.22 
TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH 
        4.37         6.41         6.15         5.69         7.63         7.79 
TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ 
        4.11         6.64         6.38         5.33         1.51         6.71 
TCGA-K4-A3WS TCGA-K4-A3WU 
        8.71         3.42 

      14Q GAIN CNV 14Q GAIN WILD-TYPE 
              1.08               0.10 
      14Q GAIN CNV 14Q GAIN WILD-TYPE 
             32.78             131.15 
      14Q GAIN CNV 14Q GAIN WILD-TYPE 
              5.82               7.04 
[1] "1.1 - 32.8 (5.8)"  "0.1 - 131.2 (7.0)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV"       "14Q GAIN CNV" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
      "14Q GAIN CNV" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV"       "14Q GAIN CNV" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
      "14Q GAIN CNV" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV"       "14Q GAIN CNV" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
      "14Q GAIN CNV" 
[1] "hr=" "1"  
D26V2, continuous
D26V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN CNV          4    7
  14Q GAIN WILD-TYPE   30   93
        clus
vv       14Q GAIN CNV 14Q GAIN WILD-TYPE
  FEMALE            4                 30
  MALE              7                 93
D26V4, continuous
D26V5, continuous
                    vv
clus                 M0 M1 MX
  14Q GAIN CNV        6  1  4
  14Q GAIN WILD-TYPE 71  4 47
D26V6, multiclass
    clus
vv   14Q GAIN CNV 14Q GAIN WILD-TYPE
  M0            6                 71
  M1            1                  4
  MX            4                 47
                    vv
clus                 N0 N1 N2 N3 NX
  14Q GAIN CNV        8  2  0  0  1
  14Q GAIN WILD-TYPE 67 12 27  5  9
D26V7, multiclass
D26V8, continuous
D26V9, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  14Q GAIN CNV             0        4         5        2
  14Q GAIN WILD-TYPE       1       32        39       46
D26V10, multiclass
           clus
vv          14Q GAIN CNV 14Q GAIN WILD-TYPE
  STAGE I              0                  1
  STAGE II             4                 32
  STAGE III            5                 39
  STAGE IV             2                 46

Clustering(27) Variable = 15q gain
D27V1, survival
                    sevent
clus2                 0  1
  15Q GAIN CNV        2  2
  15Q GAIN WILD-TYPE 91 32
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
                 4                123 
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
                 2                 32 
$`15Q GAIN CNV`
TCGA-BT-A20Q TCGA-DK-A1A5 TCGA-DK-A2HX TCGA-GC-A3I6 
       19.46         2.14         1.81         2.24 

$`15Q GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20R TCGA-BT-A20T 
       19.00        26.10        12.16        17.85         5.06        14.89 
TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD 
        8.61         5.06         8.35         8.25         5.88         3.65 
TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS 
        4.64         8.98         1.94         2.01         0.46         0.43 
TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU 
        0.69        12.92         4.90         7.20         5.46         5.19 
TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB 
        8.09         2.53        31.40         8.98         7.04         8.91 
TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I1 
      118.88       100.47         7.17         5.85         6.64        10.59 
TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM 
        7.76       123.85        75.32         2.20         3.98         7.82 
TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV 
        8.22        10.49        37.84         5.52        11.51         9.67 
TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-E5-A2PC 
        8.28        10.55       131.15        41.03        17.98        36.43 
TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 
        0.10         8.81         8.32         8.94         6.87         4.01 
TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL 
       11.05         8.94         7.96        32.02        24.30        10.98 
TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR 
        6.12         6.81         5.49         4.54        46.78        19.79 
TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZE TCGA-FJ-A3ZF 
        1.94         7.89         6.84        15.16         3.48         4.08 
TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
        3.22        49.91        26.50         5.65        26.93        32.78 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3OO 
       17.26         7.04        20.12         0.82         2.86         1.32 
TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 
        4.50         1.38         1.02         2.50         1.08         7.69 
TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R 
        2.10         3.12         5.82         6.38         7.56         3.22 
TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH 
        4.37         6.41         6.15         5.69         7.63         7.79 
TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ 
        4.11         6.64         6.38         5.33         1.51         6.71 
TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        8.71         3.42         4.64 

      15Q GAIN CNV 15Q GAIN WILD-TYPE 
              1.81               0.10 
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
             19.46             131.15 
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
              2.19               7.04 
[1] "1.8 - 19.5 (2.2)"  "0.1 - 131.2 (7.0)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"15Q GAIN WILD-TYPE"       "15Q GAIN CNV" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
      "15Q GAIN CNV" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"15Q GAIN WILD-TYPE"       "15Q GAIN CNV" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"       "15Q GAIN CNV" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"15Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"15Q GAIN WILD-TYPE"       "15Q GAIN CNV" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
      "15Q GAIN CNV" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"15Q GAIN WILD-TYPE"       "15Q GAIN CNV" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"       "15Q GAIN CNV" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"15Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"15Q GAIN WILD-TYPE"       "15Q GAIN CNV" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
      "15Q GAIN CNV" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"15Q GAIN WILD-TYPE"       "15Q GAIN CNV" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"       "15Q GAIN CNV" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"15Q GAIN WILD-TYPE" 
[1] "hr=" "3.2"
D27V2, continuous
D27V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN CNV          1    3
  15Q GAIN WILD-TYPE   33   97
        clus
vv       15Q GAIN CNV 15Q GAIN WILD-TYPE
  FEMALE            1                 33
  MALE              3                 97
D27V4, continuous
[1] "Remove cluster labels:" "15Q GAIN CNV"          
clus
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
                 2                 36 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CF-A3MF 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CF-A3MG         TCGA-CF-A3MH         TCGA-CF-A3MI 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IV         TCGA-DK-A3WX 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A3X2         TCGA-E5-A2PC         TCGA-G2-A2EF 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G2-A2EJ         TCGA-G2-A2EK         TCGA-G2-A2EL 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G2-A2EO         TCGA-G2-A2ES         TCGA-G2-A3IB 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G2-A3IE         TCGA-G2-A3VY         TCGA-GC-A3BM 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RC         TCGA-GC-A3RD 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GC-A3YS         TCGA-GD-A3OS         TCGA-GV-A3JV 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GV-A3JW         TCGA-GV-A3JX         TCGA-GV-A3JZ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GV-A3QF         TCGA-GV-A3QH         TCGA-GV-A3QI 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GV-A3QK         TCGA-GV-A40E         TCGA-GV-A40G 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
D27V5, continuous
[1] "Remove cluster labels:" "15Q GAIN CNV"          
clus
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
                 2                 82 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A20J         TCGA-BT-A20N 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A3MH         TCGA-CF-A3MI 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CU-A0YN         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A1A6         TCGA-DK-A1AA         TCGA-DK-A1AC 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A1AE         TCGA-DK-A2I6         TCGA-DK-A3IL 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A3IM         TCGA-DK-A3IN         TCGA-DK-A3IQ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A3IU         TCGA-DK-A3IV         TCGA-DK-A3WX 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-FD-A3B3 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FD-A3SJ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FJ-A3ZE         TCGA-FJ-A3ZF         TCGA-G2-A2EF 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G2-A2EJ         TCGA-G2-A2EL         TCGA-G2-A2ES 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G2-A3IE         TCGA-GC-A3BM         TCGA-GC-A3RB 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GD-A3OQ         TCGA-GD-A3OS         TCGA-GU-A42P 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GU-A42Q         TCGA-GU-A42R         TCGA-GV-A3JV 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GV-A3QG         TCGA-GV-A3QH         TCGA-GV-A3QI 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GV-A3QK         TCGA-GV-A40E         TCGA-GV-A40G 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-H4-A2HO         TCGA-H4-A2HQ         TCGA-K4-A3WS 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"15Q GAIN WILD-TYPE" 
                    vv
clus                 M0 M1 MX
  15Q GAIN CNV        4  0  0
  15Q GAIN WILD-TYPE 73  5 51
D27V6, multiclass
    clus
vv   15Q GAIN CNV 15Q GAIN WILD-TYPE
  M0            4                 73
  M1            0                  5
  MX            0                 51
                    vv
clus                 N0 N1 N2 N3 NX
  15Q GAIN CNV        2  0  2  0  0
  15Q GAIN WILD-TYPE 73 14 25  5 10
D27V7, multiclass
D27V8, continuous
D27V9, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  15Q GAIN CNV             0        1         1        2
  15Q GAIN WILD-TYPE       1       35        43       46
D27V10, multiclass
           clus
vv          15Q GAIN CNV 15Q GAIN WILD-TYPE
  STAGE I              0                  1
  STAGE II             1                 35
  STAGE III            1                 43
  STAGE IV             2                 46

Clustering(28) Variable = 16p gain
D28V1, survival
                    sevent
clus2                 0  1
  16P GAIN CNV        3  6
  16P GAIN WILD-TYPE 90 28
      16P GAIN CNV 16P GAIN WILD-TYPE 
                 9                118 
      16P GAIN CNV 16P GAIN WILD-TYPE 
                 6                 28 
$`16P GAIN CNV`
TCGA-BL-A13J TCGA-BT-A20V TCGA-BT-A2LA TCGA-C4-A0EZ TCGA-DK-A3IL TCGA-DK-A3IN 
        2.66         5.06         5.88         8.98         3.98         8.22 
TCGA-DK-A3IV TCGA-FT-A3EE TCGA-GC-A3I6 
        9.67         3.22         2.24 

$`16P GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J 
       12.79         7.33         6.74         6.58        11.93        19.00 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T 
       26.10        12.16        17.85        19.46         5.06        14.89 
TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0F0 
        8.61         8.35         8.25         3.65         4.64         1.94 
TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO 
        2.01         0.46         0.43         0.69        12.92         4.90 
TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 
        7.20         5.46         5.19         8.09         2.53         2.14 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD 
       31.40         8.98         7.04         8.91       118.88       100.47 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 
        7.17         5.85         6.64         1.81        10.59         7.76 
TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IS 
      123.85        75.32         2.20         7.82        10.49        37.84 
TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 
        5.52        11.51         8.28        10.55       131.15        41.03 
TCGA-DK-A3X2 TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 
       17.98        36.43         0.10         8.81         8.32         8.94 
TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA 
        6.87         4.01        11.05         8.94         7.96        32.02 
TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP 
       24.30        10.98         6.12         6.81         5.49         4.54 
TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 
       46.78        19.79         1.94         7.89         6.84        15.16 
TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL 
        3.48         4.08        49.91        26.50         5.65        26.93 
TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM 
       32.78        17.26         7.04        20.12         0.82         2.86 
TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS 
        1.32         4.50         1.38         1.02         2.50         1.08 
TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q 
        7.69         2.10         3.12         5.82         6.38         7.56 
TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF 
        3.22         4.37         6.41         6.15         5.69         7.63 
TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO 
        7.79         4.11         6.64         6.38         5.33         1.51 
TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        6.71         8.71         3.42         4.64 

      16P GAIN CNV 16P GAIN WILD-TYPE 
              2.24               0.10 
      16P GAIN CNV 16P GAIN WILD-TYPE 
              9.67             131.15 
      16P GAIN CNV 16P GAIN WILD-TYPE 
             5.060              7.105 
[1] "2.2 - 9.7 (5.1)"   "0.1 - 131.2 (7.1)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"16P GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"16P GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"16P GAIN WILD-TYPE" 
[1] "hr=" "7.9"
D28V2, continuous
D28V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN CNV          4    5
  16P GAIN WILD-TYPE   30   95
        clus
vv       16P GAIN CNV 16P GAIN WILD-TYPE
  FEMALE            4                 30
  MALE              5                 95
D28V4, continuous
D28V5, continuous
                    vv
clus                 M0 M1 MX
  16P GAIN CNV        7  1  1
  16P GAIN WILD-TYPE 70  4 50
D28V6, multiclass
    clus
vv   16P GAIN CNV 16P GAIN WILD-TYPE
  M0            7                 70
  M1            1                  4
  MX            1                 50
                    vv
clus                 N0 N1 N2 N3 NX
  16P GAIN CNV        4  1  3  0  1
  16P GAIN WILD-TYPE 71 13 24  5  9
D28V7, multiclass
D28V8, continuous
D28V9, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  16P GAIN CNV             0        1         4        4
  16P GAIN WILD-TYPE       1       35        40       44
D28V10, multiclass
           clus
vv          16P GAIN CNV 16P GAIN WILD-TYPE
  STAGE I              0                  1
  STAGE II             1                 35
  STAGE III            4                 40
  STAGE IV             4                 44

Clustering(29) Variable = 16q gain
D29V1, survival
                    sevent
clus2                 0  1
  16Q GAIN CNV        7  5
  16Q GAIN WILD-TYPE 86 29
      16Q GAIN CNV 16Q GAIN WILD-TYPE 
                12                115 
      16Q GAIN CNV 16Q GAIN WILD-TYPE 
                 5                 29 
$`16Q GAIN CNV`
TCGA-BL-A13J TCGA-BT-A20V TCGA-BT-A2LA TCGA-C4-A0EZ TCGA-CU-A3KJ TCGA-DK-A3IL 
        2.66         5.06         5.88         8.98         5.46         3.98 
TCGA-DK-A3IN TCGA-FT-A3EE TCGA-G2-A3VY TCGA-GC-A3I6 TCGA-GD-A2C5 TCGA-GD-A3OS 
        8.22         3.22         0.82         2.24         7.69         5.82 

$`16Q GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J 
       12.79         7.33         6.74         6.58        11.93        19.00 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T 
       26.10        12.16        17.85        19.46         5.06        14.89 
TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0F0 
        8.61         8.35         8.25         3.65         4.64         1.94 
TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO 
        2.01         0.46         0.43         0.69        12.92         4.90 
TCGA-CU-A0YR TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 
        7.20         5.19         8.09         2.53         2.14        31.40 
TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE 
        8.98         7.04         8.91       118.88       100.47         7.17 
TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 
        5.85         6.64         1.81        10.59         7.76       123.85 
TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT 
       75.32         2.20         7.82        10.49        37.84         5.52 
TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 
       11.51         9.67         8.28        10.55       131.15        41.03 
TCGA-DK-A3X2 TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 
       17.98        36.43         0.10         8.81         8.32         8.94 
TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA 
        6.87         4.01        11.05         8.94         7.96        32.02 
TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP 
       24.30        10.98         6.12         6.81         5.49         4.54 
TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 
       46.78        19.79         1.94         7.89         6.84        15.16 
TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL 
        3.48         4.08        49.91        26.50         5.65        26.93 
TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3BM TCGA-GC-A3OO 
       32.78        17.26         7.04        20.12         2.86         1.32 
TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A3OP 
        4.50         1.38         1.02         2.50         1.08         2.10 
TCGA-GD-A3OQ TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW 
        3.12         6.38         7.56         3.22         4.37         6.41 
TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK 
        6.15         5.69         7.63         7.79         4.11         6.64 
TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU 
        6.38         5.33         1.51         6.71         8.71         3.42 
TCGA-K4-A3WV 
        4.64 

      16Q GAIN CNV 16Q GAIN WILD-TYPE 
              0.82               0.10 
      16Q GAIN CNV 16Q GAIN WILD-TYPE 
              8.98             131.15 
      16Q GAIN CNV 16Q GAIN WILD-TYPE 
              5.26               7.20 
[1] "0.8 - 9.0 (5.3)"   "0.1 - 131.2 (7.2)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"16Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"16Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"16Q GAIN WILD-TYPE" 
[1] "hr=" "6.5"
D29V2, continuous
D29V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN CNV          6    6
  16Q GAIN WILD-TYPE   28   94
        clus
vv       16Q GAIN CNV 16Q GAIN WILD-TYPE
  FEMALE            6                 28
  MALE              6                 94
D29V4, continuous
D29V5, continuous
                    vv
clus                 M0 M1 MX
  16Q GAIN CNV        7  1  3
  16Q GAIN WILD-TYPE 70  4 48
D29V6, multiclass
    clus
vv   16Q GAIN CNV 16Q GAIN WILD-TYPE
  M0            7                 70
  M1            1                  4
  MX            3                 48
                    vv
clus                 N0 N1 N2 N3 NX
  16Q GAIN CNV        5  1  4  0  1
  16Q GAIN WILD-TYPE 70 13 23  5  9
D29V7, multiclass
D29V8, continuous
D29V9, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  16Q GAIN CNV             0        2         5        5
  16Q GAIN WILD-TYPE       1       34        39       43
D29V10, multiclass
           clus
vv          16Q GAIN CNV 16Q GAIN WILD-TYPE
  STAGE I              0                  1
  STAGE II             2                 34
  STAGE III            5                 39
  STAGE IV             5                 43

Clustering(30) Variable = 17p gain
D30V1, survival
                    sevent
clus2                 0  1
  17P GAIN CNV        3  3
  17P GAIN WILD-TYPE 90 31
      17P GAIN CNV 17P GAIN WILD-TYPE 
                 6                121 
      17P GAIN CNV 17P GAIN WILD-TYPE 
                 3                 31 
$`17P GAIN CNV`
TCGA-BL-A0C8 TCGA-BL-A3JM TCGA-C4-A0EZ TCGA-DK-A3IM TCGA-FT-A3EE TCGA-K4-A3WV 
       12.79         6.74         8.98         7.82         3.22         4.64 

$`17P GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N 
        7.33         2.66         6.58        11.93        19.00        26.10 
TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U 
       12.16        17.85        19.46         5.06        14.89         8.61 
TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH 
        5.06         8.35         8.25         5.88         3.65         4.64 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN 
        1.94         2.01         0.46         0.43         0.69        12.92 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 
        4.90         7.20         5.46         5.19         8.09         2.53 
TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC 
        2.14        31.40         8.98         7.04         8.91       118.88 
TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 
      100.47         7.17         5.85         6.64         1.81        10.59 
TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IN 
        7.76       123.85        75.32         2.20         3.98         8.22 
TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW 
       10.49        37.84         5.52        11.51         9.67         8.28 
TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-E5-A2PC TCGA-E7-A3Y1 
       10.55       131.15        41.03        17.98        36.43         0.10 
TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 
        8.81         8.32         8.94         6.87         4.01        11.05 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM 
        8.94         7.96        32.02        24.30        10.98         6.12 
TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS 
        6.81         5.49         4.54        46.78        19.79         1.94 
TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-G2-A2EF 
        7.89         6.84        15.16         3.48         4.08        49.91 
TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB 
       26.50         5.65        26.93        32.78        17.26         7.04 
TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB 
       20.12         0.82         2.86         2.24         1.32         4.50 
TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP 
        1.38         1.02         2.50         1.08         7.69         2.10 
TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV 
        3.12         5.82         6.38         7.56         3.22         4.37 
TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI 
        6.41         6.15         5.69         7.63         7.79         4.11 
TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS 
        6.64         6.38         5.33         1.51         6.71         8.71 
TCGA-K4-A3WU 
        3.42 

      17P GAIN CNV 17P GAIN WILD-TYPE 
              3.22               0.10 
      17P GAIN CNV 17P GAIN WILD-TYPE 
             12.79             131.15 
      17P GAIN CNV 17P GAIN WILD-TYPE 
              7.28               7.04 
[1] "3.2 - 12.8 (7.3)"  "0.1 - 131.2 (7.0)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
      "17P GAIN CNV" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
      "17P GAIN CNV" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
      "17P GAIN CNV" 
[1] "hr=" "3.2"
D30V2, continuous
D30V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN CNV          3    4
  17P GAIN WILD-TYPE   31   96
        clus
vv       17P GAIN CNV 17P GAIN WILD-TYPE
  FEMALE            3                 31
  MALE              4                 96
D30V4, continuous
[1] "Remove cluster labels:" "17P GAIN CNV"          
clus
      17P GAIN CNV 17P GAIN WILD-TYPE 
                 1                 37 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CF-A3MG 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CF-A3MH         TCGA-CF-A3MI         TCGA-DK-A2HX 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IV         TCGA-DK-A3WX 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A3X2         TCGA-E5-A2PC         TCGA-G2-A2EF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-G2-A2EJ         TCGA-G2-A2EK         TCGA-G2-A2EL 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-G2-A2EO         TCGA-G2-A2ES         TCGA-G2-A3IB 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-G2-A3IE         TCGA-G2-A3VY         TCGA-GC-A3BM 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GC-A3I6         TCGA-GC-A3OO         TCGA-GC-A3RC 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3YS         TCGA-GD-A3OS 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GV-A3JV         TCGA-GV-A3JW         TCGA-GV-A3JX 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GV-A3JZ         TCGA-GV-A3QF         TCGA-GV-A3QH 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-GV-A3QK         TCGA-GV-A40E 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GV-A40G 
"17P GAIN WILD-TYPE" 
D30V5, continuous
                    vv
clus                 M0 M1 MX
  17P GAIN CNV        4  1  2
  17P GAIN WILD-TYPE 73  4 49
D30V6, multiclass
    clus
vv   17P GAIN CNV 17P GAIN WILD-TYPE
  M0            4                 73
  M1            1                  4
  MX            2                 49
                    vv
clus                 N0 N1 N2 N3 NX
  17P GAIN CNV        5  1  0  0  1
  17P GAIN WILD-TYPE 70 13 27  5  9
D30V7, multiclass
D30V8, continuous
D30V9, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  17P GAIN CNV             1        1         4        1
  17P GAIN WILD-TYPE       0       35        40       47
D30V10, multiclass
           clus
vv          17P GAIN CNV 17P GAIN WILD-TYPE
  STAGE I              1                  0
  STAGE II             1                 35
  STAGE III            4                 40
  STAGE IV             1                 47

Clustering(31) Variable = 17q gain
D31V1, survival
                    sevent
clus2                 0  1
  17Q GAIN CNV       15  6
  17Q GAIN WILD-TYPE 78 28
      17Q GAIN CNV 17Q GAIN WILD-TYPE 
                21                106 
      17Q GAIN CNV 17Q GAIN WILD-TYPE 
                 6                 28 
$`17Q GAIN CNV`
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A20Q TCGA-C4-A0EZ TCGA-CU-A3YL 
       12.79         2.66         6.74        19.46         8.98         8.09 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AD TCGA-DK-A3IM TCGA-DK-A3X2 TCGA-FT-A3EE 
       31.40         8.98       100.47         7.82        17.98         3.22 
TCGA-GU-A42P TCGA-GU-A42R TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QK TCGA-GV-A40E 
        6.38         3.22         5.69         7.63         6.64         6.38 
TCGA-GV-A40G TCGA-H4-A2HQ TCGA-K4-A3WV 
        5.33         6.71         4.64 

$`17Q GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O 
        7.33         6.58        11.93        19.00        26.10        12.16 
TCGA-BT-A20P TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W 
       17.85         5.06        14.89         8.61         5.06         8.35 
TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0F0 TCGA-C4-A0F6 
        8.25         5.88         3.65         4.64         1.94         2.01 
TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR 
        0.46         0.43         0.69        12.92         4.90         7.20 
TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1AA TCGA-DK-A1AB 
        5.46         5.19         2.53         2.14         7.04         8.91 
TCGA-DK-A1AC TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 
      118.88         7.17         5.85         6.64         1.81        10.59 
TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IN 
        7.76       123.85        75.32         2.20         3.98         8.22 
TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW 
       10.49        37.84         5.52        11.51         9.67         8.28 
TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 
       10.55       131.15        41.03        36.43         0.10         8.81 
TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 
        8.32         8.94         6.87         4.01        11.05         8.94 
TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN 
        7.96        32.02        24.30        10.98         6.12         6.81 
TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N 
        5.49         4.54        46.78        19.79         1.94         7.89 
TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-G2-A2EF TCGA-G2-A2EJ 
        6.84        15.16         3.48         4.08        49.91        26.50 
TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE 
        5.65        26.93        32.78        17.26         7.04        20.12 
TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC 
        0.82         2.86         2.24         1.32         4.50         1.38 
TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ 
        1.02         2.50         1.08         7.69         2.10         3.12 
TCGA-GD-A3OS TCGA-GU-A42Q TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3QH 
        5.82         7.56         4.37         6.41         6.15         7.79 
TCGA-GV-A3QI TCGA-H4-A2HO TCGA-K4-A3WS TCGA-K4-A3WU 
        4.11         1.51         8.71         3.42 

      17Q GAIN CNV 17Q GAIN WILD-TYPE 
              2.66               0.10 
      17Q GAIN CNV 17Q GAIN WILD-TYPE 
            100.47             131.15 
      17Q GAIN CNV 17Q GAIN WILD-TYPE 
              6.74               7.04 
[1] "2.7 - 100.5 (6.7)" "0.1 - 131.2 (7.0)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV"       "17Q GAIN CNV" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV"       "17Q GAIN CNV" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
      "17Q GAIN CNV"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
      "17Q GAIN CNV" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV"       "17Q GAIN CNV" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV"       "17Q GAIN CNV" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
      "17Q GAIN CNV"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
      "17Q GAIN CNV" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV"       "17Q GAIN CNV" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV"       "17Q GAIN CNV" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
      "17Q GAIN CNV"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
      "17Q GAIN CNV" 
[1] "hr=" "1.1"
D31V2, continuous
D31V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN CNV          6   17
  17Q GAIN WILD-TYPE   28   83
        clus
vv       17Q GAIN CNV 17Q GAIN WILD-TYPE
  FEMALE            6                 28
  MALE             17                 83
D31V4, continuous
D31V5, continuous
                    vv
clus                 M0 M1 MX
  17Q GAIN CNV       13  2  8
  17Q GAIN WILD-TYPE 64  3 43
D31V6, multiclass
    clus
vv   17Q GAIN CNV 17Q GAIN WILD-TYPE
  M0           13                 64
  M1            2                  3
  MX            8                 43
                    vv
clus                 N0 N1 N2 N3 NX
  17Q GAIN CNV        7  3  8  1  3
  17Q GAIN WILD-TYPE 68 11 19  4  7
D31V7, multiclass
D31V8, continuous
D31V9, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  17Q GAIN CNV             1        4         5       12
  17Q GAIN WILD-TYPE       0       32        39       36
D31V10, multiclass
           clus
vv          17Q GAIN CNV 17Q GAIN WILD-TYPE
  STAGE I              1                  0
  STAGE II             4                 32
  STAGE III            5                 39
  STAGE IV            12                 36

Clustering(32) Variable = 18p gain
D32V1, survival
                    sevent
clus2                 0  1
  18P GAIN CNV       17  5
  18P GAIN WILD-TYPE 76 29
      18P GAIN CNV 18P GAIN WILD-TYPE 
                22                105 
      18P GAIN CNV 18P GAIN WILD-TYPE 
                 5                 29 
$`18P GAIN CNV`
TCGA-BL-A3JM TCGA-BT-A20V TCGA-C4-A0EZ TCGA-CF-A1HS TCGA-DK-A2I6 TCGA-DK-A3IM 
        6.74         5.06         8.98         0.43        75.32         7.82 
TCGA-DK-A3X1 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3N5 TCGA-FD-A3SR TCGA-FD-A3SS 
       41.03         8.94         6.87         8.94        19.79         1.94 
TCGA-FJ-A3ZF TCGA-G2-A2EF TCGA-G2-A3VY TCGA-GD-A2C5 TCGA-GU-A42P TCGA-GV-A3JX 
        4.08        49.91         0.82         7.69         6.38         6.15 
TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40G TCGA-K4-A3WV 
        4.11         6.64         5.33         4.64 

$`18P GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J 
       12.79         7.33         2.66         6.58        11.93        19.00 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T 
       26.10        12.16        17.85        19.46         5.06        14.89 
TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH 
        8.61         8.35         8.25         5.88         3.65         4.64 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO 
        1.94         2.01         0.46         0.69        12.92         4.90 
TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 
        7.20         5.46         5.19         8.09         2.53         2.14 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD 
       31.40         8.98         7.04         8.91       118.88       100.47 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 
        7.17         5.85         6.64         1.81        10.59         7.76 
TCGA-DK-A2I4 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS 
      123.85         2.20         3.98         8.22        10.49        37.84 
TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY 
        5.52        11.51         9.67         8.28        10.55       131.15 
TCGA-DK-A3X2 TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B7 
       17.98        36.43         0.10         8.81         8.32         4.01 
TCGA-FD-A3B8 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM 
       11.05         7.96        32.02        24.30        10.98         6.12 
TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A43N TCGA-FD-A43U 
        6.81         5.49         4.54        46.78         7.89         6.84 
TCGA-FJ-A3Z7 TCGA-FJ-A3ZE TCGA-FT-A3EE TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL 
       15.16         3.48         3.22        26.50         5.65        26.93 
TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3BM TCGA-GC-A3I6 
       32.78        17.26         7.04        20.12         2.86         2.24 
TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS 
        1.32         4.50         1.38         1.02         2.50         1.08 
TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV 
        2.10         3.12         5.82         7.56         3.22         4.37 
TCGA-GV-A3JW TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A40E TCGA-H4-A2HO 
        6.41         5.69         7.63         7.79         6.38         1.51 
TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU 
        6.71         8.71         3.42 

      18P GAIN CNV 18P GAIN WILD-TYPE 
              0.43               0.10 
      18P GAIN CNV 18P GAIN WILD-TYPE 
             75.32             131.15 
      18P GAIN CNV 18P GAIN WILD-TYPE 
              6.69               7.17 
[1] "0.4 - 75.3 (6.7)"  "0.1 - 131.2 (7.2)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
      "18P GAIN CNV"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"18P GAIN WILD-TYPE"       "18P GAIN CNV"       "18P GAIN CNV" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
      "18P GAIN CNV" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
      "18P GAIN CNV"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"18P GAIN WILD-TYPE"       "18P GAIN CNV"       "18P GAIN CNV" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
      "18P GAIN CNV" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
      "18P GAIN CNV"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"18P GAIN WILD-TYPE"       "18P GAIN CNV"       "18P GAIN CNV" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
      "18P GAIN CNV" 
[1] "hr=" "1.2"
D32V2, continuous
D32V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN CNV          7   15
  18P GAIN WILD-TYPE   27   85
        clus
vv       18P GAIN CNV 18P GAIN WILD-TYPE
  FEMALE            7                 27
  MALE             15                 85
D32V4, continuous
D32V5, continuous
                    vv
clus                 M0 M1 MX
  18P GAIN CNV       10  1 10
  18P GAIN WILD-TYPE 67  4 41
D32V6, multiclass
    clus
vv   18P GAIN CNV 18P GAIN WILD-TYPE
  M0           10                 67
  M1            1                  4
  MX           10                 41
                    vv
clus                 N0 N1 N2 N3 NX
  18P GAIN CNV       12  4  4  1  0
  18P GAIN WILD-TYPE 63 10 23  4 10
D32V7, multiclass
D32V8, continuous
D32V9, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  18P GAIN CNV             0        6         6        9
  18P GAIN WILD-TYPE       1       30        38       39
D32V10, multiclass
           clus
vv          18P GAIN CNV 18P GAIN WILD-TYPE
  STAGE I              0                  1
  STAGE II             6                 30
  STAGE III            6                 38
  STAGE IV             9                 39

Clustering(33) Variable = 18q gain
D33V1, survival
                    sevent
clus2                 0  1
  18Q GAIN CNV        3  4
  18Q GAIN WILD-TYPE 90 30
      18Q GAIN CNV 18Q GAIN WILD-TYPE 
                 7                120 
      18Q GAIN CNV 18Q GAIN WILD-TYPE 
                 4                 30 
$`18Q GAIN CNV`
TCGA-BL-A3JM TCGA-BT-A20V TCGA-C4-A0EZ TCGA-DK-A1AE TCGA-FD-A3B6 TCGA-FD-A3SR 
        6.74         5.06         8.98         7.17         6.87        19.79 
TCGA-GV-A3QI 
        4.11 

$`18Q GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J 
       12.79         7.33         2.66         6.58        11.93        19.00 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T 
       26.10        12.16        17.85        19.46         5.06        14.89 
TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH 
        8.61         8.35         8.25         5.88         3.65         4.64 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN 
        1.94         2.01         0.46         0.43         0.69        12.92 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 
        4.90         7.20         5.46         5.19         8.09         2.53 
TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC 
        2.14        31.40         8.98         7.04         8.91       118.88 
TCGA-DK-A1AD TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 
      100.47         5.85         6.64         1.81        10.59         7.76 
TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN 
      123.85        75.32         2.20         3.98         7.82         8.22 
TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW 
       10.49        37.84         5.52        11.51         9.67         8.28 
TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-E5-A2PC TCGA-E7-A3Y1 
       10.55       131.15        41.03        17.98        36.43         0.10 
TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 
        8.81         8.32         8.94         4.01        11.05         8.94 
TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN 
        7.96        32.02        24.30        10.98         6.12         6.81 
TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U 
        5.49         4.54        46.78         1.94         7.89         6.84 
TCGA-FJ-A3Z7 TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ 
       15.16         3.48         4.08         3.22        49.91        26.50 
TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE 
        5.65        26.93        32.78        17.26         7.04        20.12 
TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC 
        0.82         2.86         2.24         1.32         4.50         1.38 
TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ 
        1.02         2.50         1.08         7.69         2.10         3.12 
TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW 
        5.82         6.38         7.56         3.22         4.37         6.41 
TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QK TCGA-GV-A40E 
        6.15         5.69         7.63         7.79         6.64         6.38 
TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        5.33         1.51         6.71         8.71         3.42         4.64 

      18Q GAIN CNV 18Q GAIN WILD-TYPE 
              4.11               0.10 
      18Q GAIN CNV 18Q GAIN WILD-TYPE 
             19.79             131.15 
      18Q GAIN CNV 18Q GAIN WILD-TYPE 
              6.87               7.04 
[1] "4.1 - 19.8 (6.9)"  "0.1 - 131.2 (7.0)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"18Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"18Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"18Q GAIN WILD-TYPE" 
[1] "hr=" "3"  
D33V2, continuous
D33V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN CNV          2    5
  18Q GAIN WILD-TYPE   32   95
        clus
vv       18Q GAIN CNV 18Q GAIN WILD-TYPE
  FEMALE            2                 32
  MALE              5                 95
D33V4, continuous
[1] "Remove cluster labels:" "18Q GAIN CNV"          
clus
      18Q GAIN CNV 18Q GAIN WILD-TYPE 
                 1                 37 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CF-A3MF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CF-A3MG         TCGA-CF-A3MH         TCGA-CF-A3MI 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A2HX         TCGA-DK-A3IN         TCGA-DK-A3IV 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A3WX         TCGA-DK-A3X2         TCGA-E5-A2PC 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GC-A3RC         TCGA-GC-A3RD         TCGA-GC-A3YS 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QK         TCGA-GV-A40E 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GV-A40G 
"18Q GAIN WILD-TYPE" 
D33V5, continuous
                    vv
clus                 M0 M1 MX
  18Q GAIN CNV        3  1  3
  18Q GAIN WILD-TYPE 74  4 48
D33V6, multiclass
    clus
vv   18Q GAIN CNV 18Q GAIN WILD-TYPE
  M0            3                 74
  M1            1                  4
  MX            3                 48
                    vv
clus                 N0 N1 N2 N3 NX
  18Q GAIN CNV        4  1  2  0  0
  18Q GAIN WILD-TYPE 71 13 25  5 10
D33V7, multiclass
D33V8, continuous
D33V9, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  18Q GAIN CNV             0        1         3        3
  18Q GAIN WILD-TYPE       1       35        41       45
D33V10, multiclass
           clus
vv          18Q GAIN CNV 18Q GAIN WILD-TYPE
  STAGE I              0                  1
  STAGE II             1                 35
  STAGE III            3                 41
  STAGE IV             3                 45

Clustering(34) Variable = 19p gain
D34V1, survival
                    sevent
clus2                 0  1
  19P GAIN CNV        8  2
  19P GAIN WILD-TYPE 85 32
      19P GAIN CNV 19P GAIN WILD-TYPE 
                10                117 
      19P GAIN CNV 19P GAIN WILD-TYPE 
                 2                 32 
$`19P GAIN CNV`
TCGA-BL-A3JM TCGA-BT-A2LA TCGA-CU-A3KJ TCGA-CU-A3YL TCGA-DK-A2HX TCGA-FT-A3EE 
        6.74         5.88         5.46         8.09         1.81         3.22 
TCGA-G2-A3VY TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A40G 
        0.82         4.37         6.41         5.33 

$`19P GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J 
       12.79         7.33         2.66         6.58        11.93        19.00 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T 
       26.10        12.16        17.85        19.46         5.06        14.89 
TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LD TCGA-BT-A3PH 
        8.61         5.06         8.35         8.25         3.65         4.64 
TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C 
        8.98         1.94         2.01         0.46         0.43         0.69 
TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3QU TCGA-DK-A1A3 TCGA-DK-A1A5 
       12.92         4.90         7.20         5.19         2.53         2.14 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD 
       31.40         8.98         7.04         8.91       118.88       100.47 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 
        7.17         5.85         6.64        10.59         7.76       123.85 
TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ 
       75.32         2.20         3.98         7.82         8.22        10.49 
TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX 
       37.84         5.52        11.51         9.67         8.28        10.55 
TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 
      131.15        41.03        17.98        36.43         0.10         8.81 
TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 
        8.32         8.94         6.87         4.01        11.05         8.94 
TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN 
        7.96        32.02        24.30        10.98         6.12         6.81 
TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N 
        5.49         4.54        46.78        19.79         1.94         7.89 
TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-G2-A2EF TCGA-G2-A2EJ 
        6.84        15.16         3.48         4.08        49.91        26.50 
TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE 
        5.65        26.93        32.78        17.26         7.04        20.12 
TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD 
        2.86         2.24         1.32         4.50         1.38         1.02 
TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS 
        2.50         1.08         7.69         2.10         3.12         5.82 
TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF 
        6.38         7.56         3.22         6.15         5.69         7.63 
TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-H4-A2HO TCGA-H4-A2HQ 
        7.79         4.11         6.64         6.38         1.51         6.71 
TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        8.71         3.42         4.64 

      19P GAIN CNV 19P GAIN WILD-TYPE 
              0.82               0.10 
      19P GAIN CNV 19P GAIN WILD-TYPE 
              8.09             131.15 
      19P GAIN CNV 19P GAIN WILD-TYPE 
             5.395              7.330 
[1] "0.8 - 8.1 (5.4)"   "0.1 - 131.2 (7.3)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"19P GAIN WILD-TYPE"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"19P GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"19P GAIN WILD-TYPE"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"19P GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"19P GAIN WILD-TYPE"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"19P GAIN WILD-TYPE" 
[1] "hr=" "3.3"
D34V2, continuous
D34V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN CNV          2    9
  19P GAIN WILD-TYPE   32   91
        clus
vv       19P GAIN CNV 19P GAIN WILD-TYPE
  FEMALE            2                 32
  MALE              9                 91
D34V4, continuous
D34V5, continuous
                    vv
clus                 M0 M1 MX
  19P GAIN CNV        6  0  4
  19P GAIN WILD-TYPE 71  5 47
D34V6, multiclass
    clus
vv   19P GAIN CNV 19P GAIN WILD-TYPE
  M0            6                 71
  M1            0                  5
  MX            4                 47
                    vv
clus                 N0 N1 N2 N3 NX
  19P GAIN CNV        7  1  1  0  1
  19P GAIN WILD-TYPE 68 13 26  5  9
D34V7, multiclass
D34V8, continuous
D34V9, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  19P GAIN CNV             0        3         6        2
  19P GAIN WILD-TYPE       1       33        38       46
D34V10, multiclass
           clus
vv          19P GAIN CNV 19P GAIN WILD-TYPE
  STAGE I              0                  1
  STAGE II             3                 33
  STAGE III            6                 38
  STAGE IV             2                 46

Clustering(35) Variable = 19q gain
D35V1, survival
                    sevent
clus2                 0  1
  19Q GAIN CNV       20  4
  19Q GAIN WILD-TYPE 73 30
      19Q GAIN CNV 19Q GAIN WILD-TYPE 
                24                103 
      19Q GAIN CNV 19Q GAIN WILD-TYPE 
                 4                 30 
$`19Q GAIN CNV`
TCGA-BL-A3JM TCGA-BT-A20J TCGA-BT-A20V TCGA-BT-A2LA TCGA-C4-A0F6 TCGA-CU-A3KJ 
        6.74        19.00         5.06         5.88         2.01         5.46 
TCGA-CU-A3YL TCGA-DK-A1A6 TCGA-DK-A1AB TCGA-DK-A2HX TCGA-DK-A3IL TCGA-DK-A3X1 
        8.09        31.40         8.91         1.81         3.98        41.03 
TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EO TCGA-G2-A3VY TCGA-GC-A3RD TCGA-GU-A42R 
        3.22        49.91        32.78         0.82         1.02         3.22 
TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-H4-A2HQ TCGA-K4-A3WS 
        4.37         6.41         5.69         7.63         6.71         8.71 

$`19Q GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20N 
       12.79         7.33         2.66         6.58        11.93        26.10 
TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U 
       12.16        17.85        19.46         5.06        14.89         8.61 
TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 
        8.35         8.25         3.65         4.64         8.98         1.94 
TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR 
        0.46         0.43         0.69        12.92         4.90         7.20 
TCGA-CU-A3QU TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AC 
        5.19         2.53         2.14         8.98         7.04       118.88 
TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I1 TCGA-DK-A2I2 
      100.47         7.17         5.85         6.64        10.59         7.76 
TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ 
      123.85        75.32         2.20         7.82         8.22        10.49 
TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX 
       37.84         5.52        11.51         9.67         8.28        10.55 
TCGA-DK-A3WY TCGA-DK-A3X2 TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 
      131.15        17.98        36.43         0.10         8.81         8.32 
TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 
        8.94         6.87         4.01        11.05         8.94         7.96 
TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO 
       32.02        24.30        10.98         6.12         6.81         5.49 
TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U 
        4.54        46.78        19.79         1.94         7.89         6.84 
TCGA-FJ-A3Z7 TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL 
       15.16         3.48         4.08        26.50         5.65        26.93 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO 
       17.26         7.04        20.12         2.86         2.24         1.32 
TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP 
        4.50         1.38         2.50         1.08         7.69         2.10 
TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q TCGA-GV-A3JX TCGA-GV-A3QH 
        3.12         5.82         6.38         7.56         6.15         7.79 
TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-K4-A3WU 
        4.11         6.64         6.38         5.33         1.51         3.42 
TCGA-K4-A3WV 
        4.64 

      19Q GAIN CNV 19Q GAIN WILD-TYPE 
              0.82               0.10 
      19Q GAIN CNV 19Q GAIN WILD-TYPE 
             49.91             131.15 
      19Q GAIN CNV 19Q GAIN WILD-TYPE 
             6.145              7.200 
[1] "0.8 - 49.9 (6.1)"  "0.1 - 131.2 (7.2)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
      "19Q GAIN CNV"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"19Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
      "19Q GAIN CNV"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"19Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
      "19Q GAIN CNV"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"19Q GAIN WILD-TYPE" 
[1] "hr=" "1.6"
D35V2, continuous
D35V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN CNV          9   16
  19Q GAIN WILD-TYPE   25   84
        clus
vv       19Q GAIN CNV 19Q GAIN WILD-TYPE
  FEMALE            9                 25
  MALE             16                 84
D35V4, continuous
D35V5, continuous
                    vv
clus                 M0 M1 MX
  19Q GAIN CNV       15  1  8
  19Q GAIN WILD-TYPE 62  4 43
D35V6, multiclass
    clus
vv   19Q GAIN CNV 19Q GAIN WILD-TYPE
  M0           15                 62
  M1            1                  4
  MX            8                 43
                    vv
clus                 N0 N1 N2 N3 NX
  19Q GAIN CNV       13  2  4  1  2
  19Q GAIN WILD-TYPE 62 12 23  4  8
D35V7, multiclass
D35V8, continuous
D35V9, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  19Q GAIN CNV             0        5        11        9
  19Q GAIN WILD-TYPE       1       31        33       39
D35V10, multiclass
           clus
vv          19Q GAIN CNV 19Q GAIN WILD-TYPE
  STAGE I              0                  1
  STAGE II             5                 31
  STAGE III           11                 33
  STAGE IV             9                 39

Clustering(36) Variable = 20p gain
D36V1, survival
                    sevent
clus2                 0  1
  20P GAIN CNV       33 14
  20P GAIN WILD-TYPE 60 20
      20P GAIN CNV 20P GAIN WILD-TYPE 
                47                 80 
      20P GAIN CNV 20P GAIN WILD-TYPE 
                14                 20 
$`20P GAIN CNV`
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A20R TCGA-BT-A20V 
       12.79         2.66         6.74         6.58         5.06         5.06 
TCGA-BT-A2LD TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HS TCGA-CU-A0YR 
        3.65         8.98         1.94         2.01         0.43         7.20 
TCGA-CU-A3KJ TCGA-DK-A1A5 TCGA-DK-A1AC TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 
        5.46         2.14       118.88         1.81        10.59         7.76 
TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3WX TCGA-DK-A3X2 TCGA-FD-A3B6 TCGA-FD-A3B7 
        2.20         3.98        10.55        17.98         6.87         4.01 
TCGA-FD-A3NA TCGA-FD-A3SL TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FJ-A3ZE TCGA-FT-A3EE 
       32.02        10.98        46.78        19.79         3.48         3.22 
TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB 
       49.91        26.50         2.86         2.24         1.32         4.50 
TCGA-GC-A3RC TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX 
        1.38         7.69         2.10         4.37         6.41         6.15 
TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-H4-A2HQ TCGA-K4-A3WS 
        7.63         7.79         4.11         6.71         8.71 

$`20P GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P 
        7.33        11.93        19.00        26.10        12.16        17.85 
TCGA-BT-A20Q TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
       19.46        14.89         8.61         8.35         8.25         5.88 
TCGA-BT-A3PH TCGA-CF-A1HR TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A3QU 
        4.64         0.46         0.69        12.92         4.90         5.19 
TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB 
        8.09         2.53        31.40         8.98         7.04         8.91 
TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I4 TCGA-DK-A2I6 
      100.47         7.17         5.85         6.64       123.85        75.32 
TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU 
        7.82         8.22        10.49        37.84         5.52        11.51 
TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-E5-A2PC TCGA-E7-A3Y1 
        9.67         8.28       131.15        41.03        36.43         0.10 
TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 
        8.81         8.32         8.94        11.05         8.94         7.96 
TCGA-FD-A3SJ TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SS 
       24.30         6.12         6.81         5.49         4.54         1.94 
TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZF TCGA-G2-A2EK TCGA-G2-A2EL 
        7.89         6.84        15.16         4.08         5.65        26.93 
TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3RD 
       32.78        17.26         7.04        20.12         0.82         1.02 
TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q 
        2.50         1.08         3.12         5.82         6.38         7.56 
TCGA-GU-A42R TCGA-GV-A3JZ TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO 
        3.22         5.69         6.64         6.38         5.33         1.51 
TCGA-K4-A3WU TCGA-K4-A3WV 
        3.42         4.64 

      20P GAIN CNV 20P GAIN WILD-TYPE 
              0.43               0.10 
      20P GAIN CNV 20P GAIN WILD-TYPE 
            118.88             131.15 
      20P GAIN CNV 20P GAIN WILD-TYPE 
             6.150              7.855 
[1] "0.4 - 118.9 (6.2)" "0.1 - 131.2 (7.9)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"20P GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"20P GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"20P GAIN WILD-TYPE" 
[1] "hr=" "1.6"
D36V2, continuous
D36V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN CNV         16   34
  20P GAIN WILD-TYPE   18   66
        clus
vv       20P GAIN CNV 20P GAIN WILD-TYPE
  FEMALE           16                 18
  MALE             34                 66
D36V4, continuous
D36V5, continuous
                    vv
clus                 M0 M1 MX
  20P GAIN CNV       30  4 16
  20P GAIN WILD-TYPE 47  1 35
D36V6, multiclass
    clus
vv   20P GAIN CNV 20P GAIN WILD-TYPE
  M0           30                 47
  M1            4                  1
  MX           16                 35
                    vv
clus                 N0 N1 N2 N3 NX
  20P GAIN CNV       27  4 13  2  4
  20P GAIN WILD-TYPE 48 10 14  3  6
D36V7, multiclass
D36V8, continuous
D36V9, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  20P GAIN CNV             1       14        14       20
  20P GAIN WILD-TYPE       0       22        30       28
D36V10, multiclass
           clus
vv          20P GAIN CNV 20P GAIN WILD-TYPE
  STAGE I              1                  0
  STAGE II            14                 22
  STAGE III           14                 30
  STAGE IV            20                 28

Clustering(37) Variable = 20q gain
D37V1, survival
                    sevent
clus2                 0  1
  20Q GAIN CNV       37 14
  20Q GAIN WILD-TYPE 56 20
      20Q GAIN CNV 20Q GAIN WILD-TYPE 
                51                 76 
      20Q GAIN CNV 20Q GAIN WILD-TYPE 
                14                 20 
$`20Q GAIN CNV`
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A20J TCGA-BT-A20Q 
       12.79         2.66         6.74         6.58        19.00        19.46 
TCGA-BT-A2LD TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CU-A0YR TCGA-CU-A3KJ 
        3.65         8.98         1.94         2.01         7.20         5.46 
TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AC TCGA-DK-A2HX TCGA-DK-A2I1 
        2.14        31.40         8.98       118.88         1.81        10.59 
TCGA-DK-A2I2 TCGA-DK-A3IL TCGA-DK-A3IS TCGA-DK-A3WX TCGA-DK-A3X2 TCGA-FD-A3B6 
        7.76         3.98        37.84        10.55        17.98         6.87 
TCGA-FD-A3B7 TCGA-FD-A3NA TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FJ-A3Z7 TCGA-FJ-A3ZE 
        4.01        32.02        46.78        19.79        15.16         3.48 
TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 
        3.22        49.91        26.50         0.82         2.86         2.24 
TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GU-A42Q 
        1.32         4.50         1.38         1.08         7.69         7.56 
TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3QF TCGA-GV-A3QH 
        3.22         4.37         6.41         6.15         7.63         7.79 
TCGA-GV-A3QI TCGA-H4-A2HQ TCGA-K4-A3WS 
        4.11         6.71         8.71 

$`20Q GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BT-A0YX TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20R 
        7.33        11.93        26.10        12.16        17.85         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
       14.89         8.61         5.06         8.35         8.25         5.88 
TCGA-BT-A3PH TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO 
        4.64         0.46         0.43         0.69        12.92         4.90 
TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AD 
        5.19         8.09         2.53         7.04         8.91       100.47 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK 
        7.17         5.85         6.64       123.85        75.32         2.20 
TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV 
        7.82         8.22        10.49         5.52        11.51         9.67 
TCGA-DK-A3WW TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 
        8.28       131.15        41.03        36.43         0.10         8.81 
TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3SJ 
        8.32         8.94        11.05         8.94         7.96        24.30 
TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SS 
       10.98         6.12         6.81         5.49         4.54         1.94 
TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3ZF TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
        7.89         6.84         4.08         5.65        26.93        32.78 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GD-A3OP 
       17.26         7.04        20.12         1.02         2.50         2.10 
TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GV-A3JZ TCGA-GV-A3QK TCGA-GV-A40E 
        3.12         5.82         6.38         5.69         6.64         6.38 
TCGA-GV-A40G TCGA-H4-A2HO TCGA-K4-A3WU TCGA-K4-A3WV 
        5.33         1.51         3.42         4.64 

      20Q GAIN CNV 20Q GAIN WILD-TYPE 
              0.82               0.10 
      20Q GAIN CNV 20Q GAIN WILD-TYPE 
            118.88             131.15 
      20Q GAIN CNV 20Q GAIN WILD-TYPE 
             6.740              7.105 
[1] "0.8 - 118.9 (6.7)" "0.1 - 131.2 (7.1)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"20Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"20Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"20Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D37V2, continuous
D37V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN CNV         13   42
  20Q GAIN WILD-TYPE   21   58
        clus
vv       20Q GAIN CNV 20Q GAIN WILD-TYPE
  FEMALE           13                 21
  MALE             42                 58
D37V4, continuous
D37V5, continuous
                    vv
clus                 M0 M1 MX
  20Q GAIN CNV       31  3 20
  20Q GAIN WILD-TYPE 46  2 31
D37V6, multiclass
    clus
vv   20Q GAIN CNV 20Q GAIN WILD-TYPE
  M0           31                 46
  M1            3                  2
  MX           20                 31
                    vv
clus                 N0 N1 N2 N3 NX
  20Q GAIN CNV       29  5 13  2  4
  20Q GAIN WILD-TYPE 46  9 14  3  6
D37V7, multiclass
D37V8, continuous
D37V9, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  20Q GAIN CNV             1       18        15       20
  20Q GAIN WILD-TYPE       0       18        29       28
D37V10, multiclass
           clus
vv          20Q GAIN CNV 20Q GAIN WILD-TYPE
  STAGE I              1                  0
  STAGE II            18                 18
  STAGE III           15                 29
  STAGE IV            20                 28

Clustering(38) Variable = 21q gain
D38V1, survival
                    sevent
clus2                 0  1
  21Q GAIN CNV       20  5
  21Q GAIN WILD-TYPE 73 29
      21Q GAIN CNV 21Q GAIN WILD-TYPE 
                25                102 
      21Q GAIN CNV 21Q GAIN WILD-TYPE 
                 5                 29 
$`21Q GAIN CNV`
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BT-A2LA TCGA-C4-A0F0 TCGA-CF-A1HS TCGA-DK-A1A3 
       12.79         2.66         5.88         1.94         0.43         2.53 
TCGA-DK-A1A7 TCGA-DK-A2I1 TCGA-DK-A2I6 TCGA-DK-A3IL TCGA-DK-A3IV TCGA-DK-A3X1 
        8.98        10.59        75.32         3.98         9.67        41.03 
TCGA-DK-A3X2 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SP TCGA-FD-A3SR TCGA-G2-A2EK 
       17.98        32.02        24.30         4.54        19.79         5.65 
TCGA-G2-A3VY TCGA-GD-A2C5 TCGA-GU-A42P TCGA-GV-A3JX TCGA-GV-A40E TCGA-GV-A40G 
        0.82         7.69         6.38         6.15         6.38         5.33 
TCGA-H4-A2HQ 
        6.71 

$`21Q GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N 
        7.33         6.74         6.58        11.93        19.00        26.10 
TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U 
       12.16        17.85        19.46         5.06        14.89         8.61 
TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ 
        5.06         8.35         8.25         3.65         4.64         8.98 
TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR 
        2.01         0.46         0.69        12.92         4.90         7.20 
TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1AA 
        5.46         5.19         8.09         2.14        31.40         7.04 
TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
        8.91       118.88       100.47         7.17         5.85         6.64 
TCGA-DK-A2HX TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A3IK TCGA-DK-A3IM TCGA-DK-A3IN 
        1.81         7.76       123.85         2.20         7.82         8.22 
TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3WW TCGA-DK-A3WX 
       10.49        37.84         5.52        11.51         8.28        10.55 
TCGA-DK-A3WY TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 
      131.15        36.43         0.10         8.81         8.32         8.94 
TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3SL 
        6.87         4.01        11.05         8.94         7.96        10.98 
TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SQ TCGA-FD-A3SS TCGA-FD-A43N 
        6.12         6.81         5.49        46.78         1.94         7.89 
TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-G2-A2EF 
        6.84        15.16         3.48         4.08         3.22        49.91 
TCGA-G2-A2EJ TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE 
       26.50        26.93        32.78        17.26         7.04        20.12 
TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD 
        2.86         2.24         1.32         4.50         1.38         1.02 
TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42Q 
        2.50         1.08         2.10         3.12         5.82         7.56 
TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH 
        3.22         4.37         6.41         5.69         7.63         7.79 
TCGA-GV-A3QI TCGA-GV-A3QK TCGA-H4-A2HO TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        4.11         6.64         1.51         8.71         3.42         4.64 

      21Q GAIN CNV 21Q GAIN WILD-TYPE 
              0.43               0.10 
      21Q GAIN CNV 21Q GAIN WILD-TYPE 
             75.32             131.15 
      21Q GAIN CNV 21Q GAIN WILD-TYPE 
             6.380              7.105 
[1] "0.4 - 75.3 (6.4)"  "0.1 - 131.2 (7.1)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
      "21Q GAIN CNV"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
      "21Q GAIN CNV"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
      "21Q GAIN CNV"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"21Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
      "21Q GAIN CNV"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
      "21Q GAIN CNV"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
      "21Q GAIN CNV"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"21Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
      "21Q GAIN CNV"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
      "21Q GAIN CNV"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
      "21Q GAIN CNV"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"21Q GAIN WILD-TYPE" 
[1] "hr=" "1.6"
D38V2, continuous
D38V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN CNV          7   19
  21Q GAIN WILD-TYPE   27   81
        clus
vv       21Q GAIN CNV 21Q GAIN WILD-TYPE
  FEMALE            7                 27
  MALE             19                 81
D38V4, continuous
D38V5, continuous
                    vv
clus                 M0 M1 MX
  21Q GAIN CNV       16  1  8
  21Q GAIN WILD-TYPE 61  4 43
D38V6, multiclass
    clus
vv   21Q GAIN CNV 21Q GAIN WILD-TYPE
  M0           16                 61
  M1            1                  4
  MX            8                 43
                    vv
clus                 N0 N1 N2 N3 NX
  21Q GAIN CNV       11  2  8  0  4
  21Q GAIN WILD-TYPE 64 12 19  5  6
D38V7, multiclass
D38V8, continuous
D38V9, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  21Q GAIN CNV             1        9         4       11
  21Q GAIN WILD-TYPE       0       27        40       37
D38V10, multiclass
           clus
vv          21Q GAIN CNV 21Q GAIN WILD-TYPE
  STAGE I              1                  0
  STAGE II             9                 27
  STAGE III            4                 40
  STAGE IV            11                 37

Clustering(39) Variable = 22q gain
D39V1, survival
                    sevent
clus2                 0  1
  22Q GAIN CNV       10  0
  22Q GAIN WILD-TYPE 83 34
      22Q GAIN CNV 22Q GAIN WILD-TYPE 
                10                117 
      22Q GAIN CNV 22Q GAIN WILD-TYPE 
                 0                 34 
$`22Q GAIN CNV`
TCGA-C4-A0F6 TCGA-DK-A1A6 TCGA-DK-A2I6 TCGA-G2-A2ES TCGA-GC-A3I6 TCGA-GV-A3JV 
        2.01        31.40        75.32        17.26         2.24         4.37 
TCGA-GV-A3JZ TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E 
        5.69         4.11         6.64         6.38 

$`22Q GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
       14.89         8.61         5.06         8.35         8.25         5.88 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-CF-A1HR TCGA-CF-A1HS 
        3.65         4.64         8.98         1.94         0.46         0.43 
TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU 
        0.69        12.92         4.90         7.20         5.46         5.19 
TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB 
        8.09         2.53         2.14         8.98         7.04         8.91 
TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX 
      118.88       100.47         7.17         5.85         6.64         1.81 
TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM 
       10.59         7.76       123.85         2.20         3.98         7.82 
TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV 
        8.22        10.49        37.84         5.52        11.51         9.67 
TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-E5-A2PC 
        8.28        10.55       131.15        41.03        17.98        36.43 
TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 
        0.10         8.81         8.32         8.94         6.87         4.01 
TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL 
       11.05         8.94         7.96        32.02        24.30        10.98 
TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR 
        6.12         6.81         5.49         4.54        46.78        19.79 
TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZE TCGA-FJ-A3ZF 
        1.94         7.89         6.84        15.16         3.48         4.08 
TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
        3.22        49.91        26.50         5.65        26.93        32.78 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3OO TCGA-GC-A3RB 
        7.04        20.12         0.82         2.86         1.32         4.50 
TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP 
        1.38         1.02         2.50         1.08         7.69         2.10 
TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JW 
        3.12         5.82         6.38         7.56         3.22         6.41 
TCGA-GV-A3JX TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ 
        6.15         7.63         7.79         5.33         1.51         6.71 
TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        8.71         3.42         4.64 

      22Q GAIN CNV 22Q GAIN WILD-TYPE 
              2.01               0.10 
      22Q GAIN CNV 22Q GAIN WILD-TYPE 
             75.32             131.15 
      22Q GAIN CNV 22Q GAIN WILD-TYPE 
             6.035              7.170 
[1] "2.0 - 75.3 (6.0)"  "0.1 - 131.2 (7.2)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"22Q GAIN WILD-TYPE"       "22Q GAIN CNV" "22Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"22Q GAIN WILD-TYPE"       "22Q GAIN CNV" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"       "22Q GAIN CNV" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
      "22Q GAIN CNV" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"       "22Q GAIN CNV" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"22Q GAIN WILD-TYPE"       "22Q GAIN CNV" "22Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"22Q GAIN WILD-TYPE"       "22Q GAIN CNV" "22Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"22Q GAIN WILD-TYPE"       "22Q GAIN CNV"       "22Q GAIN CNV" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
      "22Q GAIN CNV" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"22Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"22Q GAIN WILD-TYPE"       "22Q GAIN CNV" "22Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"22Q GAIN WILD-TYPE"       "22Q GAIN CNV" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"       "22Q GAIN CNV" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
      "22Q GAIN CNV" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"       "22Q GAIN CNV" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"22Q GAIN WILD-TYPE"       "22Q GAIN CNV" "22Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"22Q GAIN WILD-TYPE"       "22Q GAIN CNV" "22Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"22Q GAIN WILD-TYPE"       "22Q GAIN CNV"       "22Q GAIN CNV" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
      "22Q GAIN CNV" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"22Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"22Q GAIN WILD-TYPE"       "22Q GAIN CNV" "22Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"22Q GAIN WILD-TYPE"       "22Q GAIN CNV" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"       "22Q GAIN CNV" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
      "22Q GAIN CNV" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"       "22Q GAIN CNV" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"22Q GAIN WILD-TYPE"       "22Q GAIN CNV" "22Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"22Q GAIN WILD-TYPE"       "22Q GAIN CNV" "22Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"22Q GAIN WILD-TYPE"       "22Q GAIN CNV"       "22Q GAIN CNV" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
      "22Q GAIN CNV" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV 
"22Q GAIN WILD-TYPE" 
[1] "hr="     "7.7e+07"
D39V2, continuous
D39V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN CNV          2    9
  22Q GAIN WILD-TYPE   32   91
        clus
vv       22Q GAIN CNV 22Q GAIN WILD-TYPE
  FEMALE            2                 32
  MALE              9                 91
D39V4, continuous
D39V5, continuous
                    vv
clus                 M0 M1 MX
  22Q GAIN CNV        6  0  5
  22Q GAIN WILD-TYPE 71  5 46
D39V6, multiclass
    clus
vv   22Q GAIN CNV 22Q GAIN WILD-TYPE
  M0            6                 71
  M1            0                  5
  MX            5                 46
                    vv
clus                 N0 N1 N2 N3 NX
  22Q GAIN CNV        4  3  2  1  1
  22Q GAIN WILD-TYPE 71 11 25  4  9
D39V7, multiclass
D39V8, continuous
D39V9, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  22Q GAIN CNV             0        2         3        5
  22Q GAIN WILD-TYPE       1       34        41       43
D39V10, multiclass
           clus
vv          22Q GAIN CNV 22Q GAIN WILD-TYPE
  STAGE I              0                  1
  STAGE II             2                 34
  STAGE III            3                 41
  STAGE IV             5                 43

Clustering(40) Variable = Xq gain
D40V1, survival
                   sevent
clus2                0  1
  XQ GAIN CNV        4  2
  XQ GAIN WILD-TYPE 89 32
      XQ GAIN CNV XQ GAIN WILD-TYPE 
                6               121 
      XQ GAIN CNV XQ GAIN WILD-TYPE 
                2                32 
$`XQ GAIN CNV`
TCGA-BL-A13J TCGA-FD-A3B6 TCGA-FT-A3EE TCGA-GD-A3OS TCGA-GU-A42P TCGA-GV-A3QH 
        2.66         6.87         3.22         5.82         6.38         7.79 

$`XQ GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J 
       12.79         7.33         6.74         6.58        11.93        19.00 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T 
       26.10        12.16        17.85        19.46         5.06        14.89 
TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD 
        8.61         5.06         8.35         8.25         5.88         3.65 
TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS 
        4.64         8.98         1.94         2.01         0.46         0.43 
TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU 
        0.69        12.92         4.90         7.20         5.46         5.19 
TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA 
        8.09         2.53         2.14        31.40         8.98         7.04 
TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
        8.91       118.88       100.47         7.17         5.85         6.64 
TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK 
        1.81        10.59         7.76       123.85        75.32         2.20 
TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT 
        3.98         7.82         8.22        10.49        37.84         5.52 
TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 
       11.51         9.67         8.28        10.55       131.15        41.03 
TCGA-DK-A3X2 TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 
       17.98        36.43         0.10         8.81         8.32         8.94 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ 
        4.01        11.05         8.94         7.96        32.02        24.30 
TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ 
       10.98         6.12         6.81         5.49         4.54        46.78 
TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZE 
       19.79         1.94         7.89         6.84        15.16         3.48 
TCGA-FJ-A3ZF TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
        4.08        49.91        26.50         5.65        26.93        32.78 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 
       17.26         7.04        20.12         0.82         2.86         2.24 
TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS 
        1.32         4.50         1.38         1.02         2.50         1.08 
TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV 
        7.69         2.10         3.12         7.56         3.22         4.37 
TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QI TCGA-GV-A3QK 
        6.41         6.15         5.69         7.63         4.11         6.64 
TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU 
        6.38         5.33         1.51         6.71         8.71         3.42 
TCGA-K4-A3WV 
        4.64 

      XQ GAIN CNV XQ GAIN WILD-TYPE 
             2.66              0.10 
      XQ GAIN CNV XQ GAIN WILD-TYPE 
             7.79            131.15 
      XQ GAIN CNV XQ GAIN WILD-TYPE 
             6.10              7.17 
[1] "2.7 - 7.8 (6.1)"   "0.1 - 131.2 (7.2)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
      "XQ GAIN CNV"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
      "XQ GAIN CNV"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
      "XQ GAIN CNV"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
[1] "hr=" "4.5"
D40V2, continuous
D40V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN CNV          2    4
  XQ GAIN WILD-TYPE   32   96
        clus
vv       XQ GAIN CNV XQ GAIN WILD-TYPE
  FEMALE           2                32
  MALE             4                96
D40V4, continuous
[1] "Remove cluster labels:" "XQ GAIN CNV"           
clus
      XQ GAIN CNV XQ GAIN WILD-TYPE 
                2                36 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A3MF        TCGA-CF-A3MG 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CF-A3MH        TCGA-CF-A3MI        TCGA-DK-A2HX        TCGA-DK-A3IN 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WX        TCGA-DK-A3X2        TCGA-E5-A2PC 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3YS        TCGA-GV-A3JV 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E        TCGA-GV-A40G 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
D40V5, continuous
                   vv
clus                M0 M1 MX
  XQ GAIN CNV        2  0  4
  XQ GAIN WILD-TYPE 75  5 47
D40V6, multiclass
    clus
vv   XQ GAIN CNV XQ GAIN WILD-TYPE
  M0           2                75
  M1           0                 5
  MX           4                47
                   vv
clus                N0 N1 N2 N3 NX
  XQ GAIN CNV        2  1  1  0  2
  XQ GAIN WILD-TYPE 73 13 26  5  8
D40V7, multiclass
D40V8, continuous
D40V9, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  XQ GAIN CNV             0        3         1        2
  XQ GAIN WILD-TYPE       1       33        43       46
D40V10, multiclass
           clus
vv          XQ GAIN CNV XQ GAIN WILD-TYPE
  STAGE I             0                 1
  STAGE II            3                33
  STAGE III           1                43
  STAGE IV            2                46

Clustering(41) Variable = 1p loss
D41V1, survival
                   sevent
clus2                0  1
  1P LOSS CNV        3  0
  1P LOSS WILD-TYPE 90 34
      1P LOSS CNV 1P LOSS WILD-TYPE 
                3               124 
      1P LOSS CNV 1P LOSS WILD-TYPE 
                0                34 
$`1P LOSS CNV`
TCGA-CU-A0YR TCGA-FJ-A3ZE TCGA-GV-A3QI 
        7.20         3.48         4.11 

$`1P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
       14.89         8.61         5.06         8.35         8.25         5.88 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR 
        3.65         4.64         8.98         1.94         2.01         0.46 
TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A3KJ TCGA-CU-A3QU 
        0.43         0.69        12.92         4.90         5.46         5.19 
TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA 
        8.09         2.53         2.14        31.40         8.98         7.04 
TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
        8.91       118.88       100.47         7.17         5.85         6.64 
TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK 
        1.81        10.59         7.76       123.85        75.32         2.20 
TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT 
        3.98         7.82         8.22        10.49        37.84         5.52 
TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 
       11.51         9.67         8.28        10.55       131.15        41.03 
TCGA-DK-A3X2 TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 
       17.98        36.43         0.10         8.81         8.32         8.94 
TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA 
        6.87         4.01        11.05         8.94         7.96        32.02 
TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP 
       24.30        10.98         6.12         6.81         5.49         4.54 
TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 
       46.78        19.79         1.94         7.89         6.84        15.16 
TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL 
        4.08         3.22        49.91        26.50         5.65        26.93 
TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM 
       32.78        17.26         7.04        20.12         0.82         2.86 
TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC 
        2.24         1.32         4.50         1.38         1.02         2.50 
TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P 
        1.08         7.69         2.10         3.12         5.82         6.38 
TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ 
        7.56         3.22         4.37         6.41         6.15         5.69 
TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO 
        7.63         7.79         6.64         6.38         5.33         1.51 
TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        6.71         8.71         3.42         4.64 

      1P LOSS CNV 1P LOSS WILD-TYPE 
             3.48              0.10 
      1P LOSS CNV 1P LOSS WILD-TYPE 
             7.20            131.15 
      1P LOSS CNV 1P LOSS WILD-TYPE 
             4.11              7.04 
[1] "3.5 - 7.2 (4.1)"   "0.1 - 131.2 (7.0)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
      "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
      "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
      "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
[1] "hr="     "3400000"
D41V2, continuous
D41V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS CNV          0    3
  1P LOSS WILD-TYPE   34   97
        clus
vv       1P LOSS CNV 1P LOSS WILD-TYPE
  FEMALE           0                34
  MALE             3                97
D41V4, continuous
[1] "Remove cluster labels:" "1P LOSS CNV"           
clus
      1P LOSS CNV 1P LOSS WILD-TYPE 
                1                37 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A3MF        TCGA-CF-A3MG 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CF-A3MH        TCGA-CF-A3MI        TCGA-DK-A2HX        TCGA-DK-A3IN 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WX        TCGA-DK-A3X2        TCGA-E5-A2PC 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3YS        TCGA-GD-A3OS 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QK        TCGA-GV-A40E 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GV-A40G 
"1P LOSS WILD-TYPE" 
D41V5, continuous
                   vv
clus                M0 M1 MX
  1P LOSS CNV        1  1  1
  1P LOSS WILD-TYPE 76  4 50
D41V6, multiclass
    clus
vv   1P LOSS CNV 1P LOSS WILD-TYPE
  M0           1                76
  M1           1                 4
  MX           1                50
                   vv
clus                N0 N1 N2 N3 NX
  1P LOSS CNV        1  0  1  1  0
  1P LOSS WILD-TYPE 74 14 26  4 10
D41V7, multiclass
D41V8, continuous
[1] "Remove cluster labels:" "1P LOSS CNV"           
clus
      1P LOSS CNV 1P LOSS WILD-TYPE 
                2                98 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20T 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BT-A20V        TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-CU-A0YN        TCGA-CU-A0YO 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-DK-A1A3 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6        TCGA-DK-A3IK 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN        TCGA-DK-A3IQ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU        TCGA-DK-A3WW 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A3WX        TCGA-DK-A3WY        TCGA-DK-A3X1        TCGA-DK-A3X2 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A43U        TCGA-FJ-A3Z7        TCGA-FT-A3EE        TCGA-GC-A3BM 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GU-A42P        TCGA-GU-A42Q 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GV-A3QG        TCGA-GV-A3QK        TCGA-GV-A40G        TCGA-H4-A2HO 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WV 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
D41V9, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  1P LOSS CNV             0        0         1        2
  1P LOSS WILD-TYPE       1       36        43       46
D41V10, multiclass
           clus
vv          1P LOSS CNV 1P LOSS WILD-TYPE
  STAGE I             0                 1
  STAGE II            0                36
  STAGE III           1                43
  STAGE IV            2                46

Clustering(42) Variable = 2p loss
D42V1, survival
                   sevent
clus2                0  1
  2P LOSS CNV        4  2
  2P LOSS WILD-TYPE 89 32
      2P LOSS CNV 2P LOSS WILD-TYPE 
                6               121 
      2P LOSS CNV 2P LOSS WILD-TYPE 
                2                32 
$`2P LOSS CNV`
TCGA-DK-A2HX TCGA-DK-A3IV TCGA-FJ-A3ZE TCGA-G2-A2EL TCGA-GV-A3JV TCGA-GV-A3JW 
        1.81         9.67         3.48        26.93         4.37         6.41 

$`2P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
       14.89         8.61         5.06         8.35         8.25         5.88 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR 
        3.65         4.64         8.98         1.94         2.01         0.46 
TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ 
        0.43         0.69        12.92         4.90         7.20         5.46 
TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 
        5.19         8.09         2.53         2.14        31.40         8.98 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF 
        7.04         8.91       118.88       100.47         7.17         5.85 
TCGA-DK-A1AG TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK 
        6.64        10.59         7.76       123.85        75.32         2.20 
TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT 
        3.98         7.82         8.22        10.49        37.84         5.52 
TCGA-DK-A3IU TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 
       11.51         8.28        10.55       131.15        41.03        17.98 
TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 
       36.43         0.10         8.81         8.32         8.94         6.87 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ 
        4.01        11.05         8.94         7.96        32.02        24.30 
TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ 
       10.98         6.12         6.81         5.49         4.54        46.78 
TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZF 
       19.79         1.94         7.89         6.84        15.16         4.08 
TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EO TCGA-G2-A2ES 
        3.22        49.91        26.50         5.65        32.78        17.26 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO 
        7.04        20.12         0.82         2.86         2.24         1.32 
TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 
        4.50         1.38         1.02         2.50         1.08         7.69 
TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R 
        2.10         3.12         5.82         6.38         7.56         3.22 
TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK 
        6.15         5.69         7.63         7.79         4.11         6.64 
TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU 
        6.38         5.33         1.51         6.71         8.71         3.42 
TCGA-K4-A3WV 
        4.64 

      2P LOSS CNV 2P LOSS WILD-TYPE 
             1.81              0.10 
      2P LOSS CNV 2P LOSS WILD-TYPE 
            26.93            131.15 
      2P LOSS CNV 2P LOSS WILD-TYPE 
             5.39              7.04 
[1] "1.8 - 26.9 (5.4)"  "0.1 - 131.2 (7.0)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
      "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
      "2P LOSS CNV"       "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
      "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
      "2P LOSS CNV"       "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
      "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
      "2P LOSS CNV"       "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D42V2, continuous
D42V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS CNV          1    7
  2P LOSS WILD-TYPE   33   93
        clus
vv       2P LOSS CNV 2P LOSS WILD-TYPE
  FEMALE           1                33
  MALE             7                93
D42V4, continuous
D42V5, continuous
                   vv
clus                M0 M1 MX
  2P LOSS CNV        5  1  2
  2P LOSS WILD-TYPE 72  4 49
D42V6, multiclass
    clus
vv   2P LOSS CNV 2P LOSS WILD-TYPE
  M0           5                72
  M1           1                 4
  MX           2                49
                   vv
clus                N0 N1 N2 N3 NX
  2P LOSS CNV        3  1  1  1  2
  2P LOSS WILD-TYPE 72 13 26  4  8
D42V7, multiclass
D42V8, continuous
[1] "Remove cluster labels:" "2P LOSS CNV"           
clus
      2P LOSS CNV 2P LOSS WILD-TYPE 
                2                98 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20T 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BT-A20V        TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-CU-A0YN        TCGA-CU-A0YO 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2I1 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6        TCGA-DK-A3IK 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN        TCGA-DK-A3IQ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU        TCGA-DK-A3WW 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A3WX        TCGA-DK-A3WY        TCGA-DK-A3X1        TCGA-DK-A3X2 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A43U        TCGA-FJ-A3Z7        TCGA-FT-A3EE        TCGA-GC-A3BM 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GU-A42P        TCGA-GU-A42Q 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF        TCGA-GV-A3QG 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40G        TCGA-H4-A2HO 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WV 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
D42V9, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  2P LOSS CNV             0        4         1        3
  2P LOSS WILD-TYPE       1       32        43       45
D42V10, multiclass
           clus
vv          2P LOSS CNV 2P LOSS WILD-TYPE
  STAGE I             0                 1
  STAGE II            4                32
  STAGE III           1                43
  STAGE IV            3                45

Clustering(43) Variable = 2q loss
D43V1, survival
                   sevent
clus2                0  1
  2Q LOSS CNV        5  8
  2Q LOSS WILD-TYPE 88 26
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
               13               114 
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
                8                26 
$`2Q LOSS CNV`
TCGA-BT-A20V TCGA-BT-A2LA TCGA-BT-A3PH TCGA-DK-A2HX TCGA-DK-A3IK TCGA-DK-A3IV 
        5.06         5.88         4.64         1.81         2.20         9.67 
TCGA-DK-A3X2 TCGA-FD-A3B5 TCGA-FD-A3SJ TCGA-FD-A3SR TCGA-G2-A2EL TCGA-GV-A3JV 
       17.98         8.94        24.30        19.79        26.93         4.37 
TCGA-GV-A3JW 
        6.41 

$`2Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LD TCGA-C4-A0EZ 
       14.89         8.61         8.35         8.25         3.65         8.98 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN 
        1.94         2.01         0.46         0.43         0.69        12.92 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 
        4.90         7.20         5.46         5.19         8.09         2.53 
TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC 
        2.14        31.40         8.98         7.04         8.91       118.88 
TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I1 TCGA-DK-A2I2 
      100.47         7.17         5.85         6.64        10.59         7.76 
TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ 
      123.85        75.32         3.98         7.82         8.22        10.49 
TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY 
       37.84         5.52        11.51         8.28        10.55       131.15 
TCGA-DK-A3X1 TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B6 
       41.03        36.43         0.10         8.81         8.32         6.87 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SL 
        4.01        11.05         8.94         7.96        32.02        10.98 
TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SS 
        6.12         6.81         5.49         4.54        46.78         1.94 
TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-FT-A3EE 
        7.89         6.84        15.16         3.48         4.08         3.22 
TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB 
       49.91        26.50         5.65        32.78        17.26         7.04 
TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB 
       20.12         0.82         2.86         2.24         1.32         4.50 
TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP 
        1.38         1.02         2.50         1.08         7.69         2.10 
TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JX 
        3.12         5.82         6.38         7.56         3.22         6.15 
TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E 
        5.69         7.63         7.79         4.11         6.64         6.38 
TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        5.33         1.51         6.71         8.71         3.42         4.64 

      2Q LOSS CNV 2Q LOSS WILD-TYPE 
             1.81              0.10 
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
            26.93            131.15 
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
             6.41              7.04 
[1] "1.8 - 26.9 (6.4)"  "0.1 - 131.2 (7.0)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
      "2Q LOSS CNV"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
      "2Q LOSS CNV"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
      "2Q LOSS CNV"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
[1] "hr=" "2.4"
D43V2, continuous
D43V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS CNV          2   14
  2Q LOSS WILD-TYPE   32   86
        clus
vv       2Q LOSS CNV 2Q LOSS WILD-TYPE
  FEMALE           2                32
  MALE            14                86
D43V4, continuous
D43V5, continuous
                   vv
clus                M0 M1 MX
  2Q LOSS CNV        9  0  7
  2Q LOSS WILD-TYPE 68  5 44
D43V6, multiclass
    clus
vv   2Q LOSS CNV 2Q LOSS WILD-TYPE
  M0           9                68
  M1           0                 5
  MX           7                44
                   vv
clus                N0 N1 N2 N3 NX
  2Q LOSS CNV        4  2  8  0  2
  2Q LOSS WILD-TYPE 71 12 19  5  8
D43V7, multiclass
D43V8, continuous
D43V9, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  2Q LOSS CNV             0        4         2        9
  2Q LOSS WILD-TYPE       1       32        42       39
D43V10, multiclass
           clus
vv          2Q LOSS CNV 2Q LOSS WILD-TYPE
  STAGE I             0                 1
  STAGE II            4                32
  STAGE III           2                42
  STAGE IV            9                39

Clustering(44) Variable = 3p loss
D44V1, survival
                   sevent
clus2                0  1
  3P LOSS CNV        7  2
  3P LOSS WILD-TYPE 86 32
      3P LOSS CNV 3P LOSS WILD-TYPE 
                9               118 
      3P LOSS CNV 3P LOSS WILD-TYPE 
                2                32 
$`3P LOSS CNV`
TCGA-BT-A20V TCGA-CU-A3KJ TCGA-DK-A1A6 TCGA-DK-A1AB TCGA-DK-A2I2 TCGA-FD-A3N5 
        5.06         5.46        31.40         8.91         7.76         8.94 
TCGA-G2-A3IB TCGA-GC-A3RB TCGA-GC-A3WC 
        7.04         4.50         2.50 

$`3P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD 
       14.89         8.61         8.35         8.25         5.88         3.65 
TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS 
        4.64         8.98         1.94         2.01         0.46         0.43 
TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3QU TCGA-CU-A3YL 
        0.69        12.92         4.90         7.20         5.19         8.09 
TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AC TCGA-DK-A1AD 
        2.53         2.14         8.98         7.04       118.88       100.47 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I4 
        7.17         5.85         6.64         1.81        10.59       123.85 
TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ 
       75.32         2.20         3.98         7.82         8.22        10.49 
TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX 
       37.84         5.52        11.51         9.67         8.28        10.55 
TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 
      131.15        41.03        17.98        36.43         0.10         8.81 
TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N6 
        8.32         8.94         6.87         4.01        11.05         7.96 
TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO 
       32.02        24.30        10.98         6.12         6.81         5.49 
TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U 
        4.54        46.78        19.79         1.94         7.89         6.84 
TCGA-FJ-A3Z7 TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ 
       15.16         3.48         4.08         3.22        49.91        26.50 
TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IE TCGA-G2-A3VY 
        5.65        26.93        32.78        17.26        20.12         0.82 
TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3YS 
        2.86         2.24         1.32         1.38         1.02         1.08 
TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q 
        7.69         2.10         3.12         5.82         6.38         7.56 
TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF 
        3.22         4.37         6.41         6.15         5.69         7.63 
TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO 
        7.79         4.11         6.64         6.38         5.33         1.51 
TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        6.71         8.71         3.42         4.64 

      3P LOSS CNV 3P LOSS WILD-TYPE 
              2.5               0.1 
      3P LOSS CNV 3P LOSS WILD-TYPE 
            31.40            131.15 
      3P LOSS CNV 3P LOSS WILD-TYPE 
            7.040             6.955 
[1] "2.5 - 31.4 (7.0)"  "0.1 - 131.2 (7.0)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
[1] "hr=" "1"  
D44V2, continuous
D44V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS CNV          4    5
  3P LOSS WILD-TYPE   30   95
        clus
vv       3P LOSS CNV 3P LOSS WILD-TYPE
  FEMALE           4                30
  MALE             5                95
D44V4, continuous
[1] "Remove cluster labels:" "3P LOSS CNV"           
clus
      3P LOSS CNV 3P LOSS WILD-TYPE 
                1                37 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A3MF        TCGA-CF-A3MG 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CF-A3MH        TCGA-CF-A3MI        TCGA-DK-A2HX        TCGA-DK-A3IN 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WX        TCGA-DK-A3X2        TCGA-E5-A2PC 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IE        TCGA-G2-A3VY 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RC 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3YS        TCGA-GD-A3OS        TCGA-GV-A3JV 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GV-A40G 
"3P LOSS WILD-TYPE" 
D44V5, continuous
                   vv
clus                M0 M1 MX
  3P LOSS CNV        6  0  3
  3P LOSS WILD-TYPE 71  5 48
D44V6, multiclass
    clus
vv   3P LOSS CNV 3P LOSS WILD-TYPE
  M0           6                71
  M1           0                 5
  MX           3                48
                   vv
clus                N0 N1 N2 N3 NX
  3P LOSS CNV        4  1  1  1  1
  3P LOSS WILD-TYPE 71 13 26  4  9
D44V7, multiclass
D44V8, continuous
D44V9, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  3P LOSS CNV             0        2         3        4
  3P LOSS WILD-TYPE       1       34        41       44
D44V10, multiclass
           clus
vv          3P LOSS CNV 3P LOSS WILD-TYPE
  STAGE I             0                 1
  STAGE II            2                34
  STAGE III           3                41
  STAGE IV            4                44

Clustering(45) Variable = 4p loss
D45V1, survival
                   sevent
clus2                0  1
  4P LOSS CNV       17  7
  4P LOSS WILD-TYPE 76 27
      4P LOSS CNV 4P LOSS WILD-TYPE 
               24               103 
      4P LOSS CNV 4P LOSS WILD-TYPE 
                7                27 
$`4P LOSS CNV`
TCGA-BT-A20N TCGA-BT-A20V TCGA-BT-A3PH TCGA-DK-A1A7 TCGA-DK-A1AD TCGA-DK-A2I1 
       26.10         5.06         4.64         8.98       100.47        10.59 
TCGA-DK-A3IT TCGA-DK-A3IV TCGA-DK-A3X2 TCGA-FD-A3B5 TCGA-FD-A3SL TCGA-FD-A3SO 
        5.52         9.67        17.98         8.94        10.98         5.49 
TCGA-FD-A3SS TCGA-FJ-A3ZF TCGA-G2-A3IB TCGA-GC-A3BM TCGA-GC-A3RB TCGA-GD-A2C5 
        1.94         4.08         7.04         2.86         4.50         7.69 
TCGA-GU-A42Q TCGA-GV-A3JW TCGA-GV-A3JZ TCGA-GV-A40G TCGA-H4-A2HQ TCGA-K4-A3WV 
        7.56         6.41         5.69         5.33         6.71         4.64 

$`4P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T 
       19.00        12.16        17.85        19.46         5.06        14.89 
TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-C4-A0EZ 
        8.61         8.35         8.25         5.88         3.65         8.98 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN 
        1.94         2.01         0.46         0.43         0.69        12.92 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 
        4.90         7.20         5.46         5.19         8.09         2.53 
TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AE 
        2.14        31.40         7.04         8.91       118.88         7.17 
TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 
        5.85         6.64         1.81         7.76       123.85        75.32 
TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS 
        2.20         3.98         7.82         8.22        10.49        37.84 
TCGA-DK-A3IU TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-E5-A2PC 
       11.51         8.28        10.55       131.15        41.03        36.43 
TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 
        0.10         8.81         8.32         6.87         4.01        11.05 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SM TCGA-FD-A3SN 
        8.94         7.96        32.02        24.30         6.12         6.81 
TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 
        4.54        46.78        19.79         7.89         6.84        15.16 
TCGA-FJ-A3ZE TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL 
        3.48         3.22        49.91        26.50         5.65        26.93 
TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3I6 TCGA-GC-A3OO 
       32.78        17.26        20.12         0.82         2.24         1.32 
TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A3OP TCGA-GD-A3OQ 
        1.38         1.02         2.50         1.08         2.10         3.12 
TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JX TCGA-GV-A3QF 
        5.82         6.38         3.22         4.37         6.15         7.63 
TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-H4-A2HO TCGA-K4-A3WS 
        7.79         4.11         6.64         6.38         1.51         8.71 
TCGA-K4-A3WU 
        3.42 

      4P LOSS CNV 4P LOSS WILD-TYPE 
             1.94              0.10 
      4P LOSS CNV 4P LOSS WILD-TYPE 
           100.47            131.15 
      4P LOSS CNV 4P LOSS WILD-TYPE 
             6.56              7.17 
[1] "1.9 - 100.5 (6.6)" "0.1 - 131.2 (7.2)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
[1] "hr=" "1.4"
D45V2, continuous
D45V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS CNV          6   20
  4P LOSS WILD-TYPE   28   80
        clus
vv       4P LOSS CNV 4P LOSS WILD-TYPE
  FEMALE           6                28
  MALE            20                80
D45V4, continuous
D45V5, continuous
                   vv
clus                M0 M1 MX
  4P LOSS CNV       13  2 11
  4P LOSS WILD-TYPE 64  3 40
D45V6, multiclass
    clus
vv   4P LOSS CNV 4P LOSS WILD-TYPE
  M0          13                64
  M1           2                 3
  MX          11                40
                   vv
clus                N0 N1 N2 N3 NX
  4P LOSS CNV       10  2  7  2  5
  4P LOSS WILD-TYPE 65 12 20  3  5
D45V7, multiclass
D45V8, continuous
D45V9, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  4P LOSS CNV             0        9         5       12
  4P LOSS WILD-TYPE       1       27        39       36
D45V10, multiclass
           clus
vv          4P LOSS CNV 4P LOSS WILD-TYPE
  STAGE I             0                 1
  STAGE II            9                27
  STAGE III           5                39
  STAGE IV           12                36

Clustering(46) Variable = 4q loss
D46V1, survival
                   sevent
clus2                0  1
  4Q LOSS CNV       17  6
  4Q LOSS WILD-TYPE 76 28
      4Q LOSS CNV 4Q LOSS WILD-TYPE 
               23               104 
      4Q LOSS CNV 4Q LOSS WILD-TYPE 
                6                28 
$`4Q LOSS CNV`
TCGA-BT-A20N TCGA-BT-A20V TCGA-BT-A3PH TCGA-C4-A0F0 TCGA-DK-A1AD TCGA-DK-A2I1 
       26.10         5.06         4.64         1.94       100.47        10.59 
TCGA-DK-A3IM TCGA-DK-A3IT TCGA-FD-A3B5 TCGA-FD-A3SL TCGA-FD-A3SO TCGA-FJ-A3ZF 
        7.82         5.52         8.94        10.98         5.49         4.08 
TCGA-G2-A2EL TCGA-G2-A3IB TCGA-GC-A3BM TCGA-GC-A3RB TCGA-GD-A2C5 TCGA-GU-A42Q 
       26.93         7.04         2.86         4.50         7.69         7.56 
TCGA-GV-A3JW TCGA-GV-A3JZ TCGA-GV-A40G TCGA-H4-A2HQ TCGA-K4-A3WV 
        6.41         5.69         5.33         6.71         4.64 

$`4Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T 
       19.00        12.16        17.85        19.46         5.06        14.89 
TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-C4-A0EZ 
        8.61         8.35         8.25         5.88         3.65         8.98 
TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO 
        2.01         0.46         0.43         0.69        12.92         4.90 
TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 
        7.20         5.46         5.19         8.09         2.53         2.14 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AE 
       31.40         8.98         7.04         8.91       118.88         7.17 
TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 
        5.85         6.64         1.81         7.76       123.85        75.32 
TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IU 
        2.20         3.98         8.22        10.49        37.84        11.51 
TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 
        9.67         8.28        10.55       131.15        41.03        17.98 
TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B6 TCGA-FD-A3B7 
       36.43         0.10         8.81         8.32         6.87         4.01 
TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SM 
       11.05         8.94         7.96        32.02        24.30         6.12 
TCGA-FD-A3SN TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N 
        6.81         4.54        46.78        19.79         1.94         7.89 
TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZE TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ 
        6.84        15.16         3.48         3.22        49.91        26.50 
TCGA-G2-A2EK TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3I6 
        5.65        32.78        17.26        20.12         0.82         2.24 
TCGA-GC-A3OO TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A3OP 
        1.32         1.38         1.02         2.50         1.08         2.10 
TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JX 
        3.12         5.82         6.38         3.22         4.37         6.15 
TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-H4-A2HO 
        7.63         7.79         4.11         6.64         6.38         1.51 
TCGA-K4-A3WS TCGA-K4-A3WU 
        8.71         3.42 

      4Q LOSS CNV 4Q LOSS WILD-TYPE 
             1.94              0.10 
      4Q LOSS CNV 4Q LOSS WILD-TYPE 
           100.47            131.15 
      4Q LOSS CNV 4Q LOSS WILD-TYPE 
            6.410             7.185 
[1] "1.9 - 100.5 (6.4)" "0.1 - 131.2 (7.2)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
[1] "hr=" "1.2"
D46V2, continuous
D46V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS CNV          5   19
  4Q LOSS WILD-TYPE   29   81
        clus
vv       4Q LOSS CNV 4Q LOSS WILD-TYPE
  FEMALE           5                29
  MALE            19                81
D46V4, continuous
D46V5, continuous
                   vv
clus                M0 M1 MX
  4Q LOSS CNV       12  2 10
  4Q LOSS WILD-TYPE 65  3 41
D46V6, multiclass
    clus
vv   4Q LOSS CNV 4Q LOSS WILD-TYPE
  M0          12                65
  M1           2                 3
  MX          10                41
                   vv
clus                N0 N1 N2 N3 NX
  4Q LOSS CNV       13  2  5  1  3
  4Q LOSS WILD-TYPE 62 12 22  4  7
D46V7, multiclass
D46V8, continuous
D46V9, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  4Q LOSS CNV             0        9         6        9
  4Q LOSS WILD-TYPE       1       27        38       39
D46V10, multiclass
           clus
vv          4Q LOSS CNV 4Q LOSS WILD-TYPE
  STAGE I             0                 1
  STAGE II            9                27
  STAGE III           6                38
  STAGE IV            9                39

Clustering(47) Variable = 5p loss
D47V1, survival
                   sevent
clus2                0  1
  5P LOSS CNV       11  1
  5P LOSS WILD-TYPE 82 33
      5P LOSS CNV 5P LOSS WILD-TYPE 
               12               115 
      5P LOSS CNV 5P LOSS WILD-TYPE 
                1                33 
$`5P LOSS CNV`
TCGA-BT-A3PH TCGA-C4-A0F6 TCGA-DK-A1A7 TCGA-DK-A2I1 TCGA-DK-A3IM TCGA-DK-A3X1 
        4.64         2.01         8.98        10.59         7.82        41.03 
TCGA-E5-A2PC TCGA-FJ-A3ZE TCGA-G2-A2EF TCGA-G2-A3VY TCGA-GV-A3JW TCGA-K4-A3WV 
       36.43         3.48        49.91         0.82         6.41         4.64 

$`5P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
       14.89         8.61         5.06         8.35         8.25         5.88 
TCGA-BT-A2LD TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C 
        3.65         8.98         1.94         0.46         0.43         0.69 
TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL 
       12.92         4.90         7.20         5.46         5.19         8.09 
TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC 
        2.53         2.14        31.40         7.04         8.91       118.88 
TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I2 
      100.47         7.17         5.85         6.64         1.81         7.76 
TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IN TCGA-DK-A3IQ 
      123.85        75.32         2.20         3.98         8.22        10.49 
TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX 
       37.84         5.52        11.51         9.67         8.28        10.55 
TCGA-DK-A3WY TCGA-DK-A3X2 TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 
      131.15        17.98         0.10         8.81         8.32         8.94 
TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA 
        6.87         4.01        11.05         8.94         7.96        32.02 
TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP 
       24.30        10.98         6.12         6.81         5.49         4.54 
TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 
       46.78        19.79         1.94         7.89         6.84        15.16 
TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
        4.08         3.22        26.50         5.65        26.93        32.78 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO 
       17.26         7.04        20.12         2.86         2.24         1.32 
TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 
        4.50         1.38         1.02         2.50         1.08         7.69 
TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R 
        2.10         3.12         5.82         6.38         7.56         3.22 
TCGA-GV-A3JV TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI 
        4.37         6.15         5.69         7.63         7.79         4.11 
TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS 
        6.64         6.38         5.33         1.51         6.71         8.71 
TCGA-K4-A3WU 
        3.42 

      5P LOSS CNV 5P LOSS WILD-TYPE 
             0.82              0.10 
      5P LOSS CNV 5P LOSS WILD-TYPE 
            49.91            131.15 
      5P LOSS CNV 5P LOSS WILD-TYPE 
            7.115             7.040 
[1] "0.8 - 49.9 (7.1)"  "0.1 - 131.2 (7.0)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
      "5P LOSS CNV" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
      "5P LOSS CNV" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
      "5P LOSS CNV" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
[1] "hr=" "4.4"
D47V2, continuous
D47V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS CNV          6    7
  5P LOSS WILD-TYPE   28   93
        clus
vv       5P LOSS CNV 5P LOSS WILD-TYPE
  FEMALE           6                28
  MALE             7                93
D47V4, continuous
D47V5, continuous
                   vv
clus                M0 M1 MX
  5P LOSS CNV        7  1  4
  5P LOSS WILD-TYPE 70  4 47
D47V6, multiclass
    clus
vv   5P LOSS CNV 5P LOSS WILD-TYPE
  M0           7                70
  M1           1                 4
  MX           4                47
                   vv
clus                N0 N1 N2 N3 NX
  5P LOSS CNV        7  1  2  1  1
  5P LOSS WILD-TYPE 68 13 25  4  9
D47V7, multiclass
D47V8, continuous
D47V9, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  5P LOSS CNV             0        6         3        4
  5P LOSS WILD-TYPE       1       30        41       44
D47V10, multiclass
           clus
vv          5P LOSS CNV 5P LOSS WILD-TYPE
  STAGE I             0                 1
  STAGE II            6                30
  STAGE III           3                41
  STAGE IV            4                44

Clustering(48) Variable = 5q loss
D48V1, survival
                   sevent
clus2                0  1
  5Q LOSS CNV       24  7
  5Q LOSS WILD-TYPE 69 27
      5Q LOSS CNV 5Q LOSS WILD-TYPE 
               31                96 
      5Q LOSS CNV 5Q LOSS WILD-TYPE 
                7                27 
$`5Q LOSS CNV`
TCGA-BT-A20V TCGA-BT-A3PH TCGA-C4-A0F6 TCGA-CU-A3QU TCGA-DK-A1A5 TCGA-DK-A1AD 
        5.06         4.64         2.01         5.19         2.14       100.47 
TCGA-DK-A2I1 TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3X1 TCGA-E5-A2PC 
       10.59         7.82         8.22        10.49        41.03        36.43 
TCGA-FD-A3B5 TCGA-FD-A3N5 TCGA-FD-A3SJ TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SS 
        8.94         8.94        24.30         6.12         6.81         1.94 
TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-G2-A2EF TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY 
        3.48         4.08        49.91         7.04        20.12         0.82 
TCGA-GD-A2C5 TCGA-GU-A42P TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF 
        7.69         6.38         6.41         6.15         5.69         7.63 
TCGA-H4-A2HQ 
        6.71 

$`5Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD 
       14.89         8.61         8.35         8.25         5.88         3.65 
TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN 
        8.98         1.94         0.46         0.43         0.69        12.92 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A6 
        4.90         7.20         5.46         8.09         2.53        31.40 
TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AE TCGA-DK-A1AF 
        8.98         7.04         8.91       118.88         7.17         5.85 
TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK 
        6.64         1.81         7.76       123.85        75.32         2.20 
TCGA-DK-A3IL TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW 
        3.98        37.84         5.52        11.51         9.67         8.28 
TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X2 TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 
       10.55       131.15        17.98         0.10         8.81         8.32 
TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SL 
        6.87         4.01        11.05         7.96        32.02        10.98 
TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A43N TCGA-FD-A43U 
        5.49         4.54        46.78        19.79         7.89         6.84 
TCGA-FJ-A3Z7 TCGA-FT-A3EE TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
       15.16         3.22        26.50         5.65        26.93        32.78 
TCGA-G2-A2ES TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC 
       17.26         2.86         2.24         1.32         4.50         1.38 
TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS 
        1.02         2.50         1.08         2.10         3.12         5.82 
TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK 
        7.56         3.22         4.37         7.79         4.11         6.64 
TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        6.38         5.33         1.51         8.71         3.42         4.64 

      5Q LOSS CNV 5Q LOSS WILD-TYPE 
             0.82              0.10 
      5Q LOSS CNV 5Q LOSS WILD-TYPE 
           100.47            131.15 
      5Q LOSS CNV 5Q LOSS WILD-TYPE 
            6.810             7.105 
[1] "0.8 - 100.5 (6.8)" "0.1 - 131.2 (7.1)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D48V2, continuous
D48V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS CNV          7   25
  5Q LOSS WILD-TYPE   27   75
        clus
vv       5Q LOSS CNV 5Q LOSS WILD-TYPE
  FEMALE           7                27
  MALE            25                75
D48V4, continuous
D48V5, continuous
                   vv
clus                M0 M1 MX
  5Q LOSS CNV       14  3 14
  5Q LOSS WILD-TYPE 63  2 37
D48V6, multiclass
    clus
vv   5Q LOSS CNV 5Q LOSS WILD-TYPE
  M0          14                63
  M1           3                 2
  MX          14                37
                   vv
clus                N0 N1 N2 N3 NX
  5Q LOSS CNV       13  4  7  3  4
  5Q LOSS WILD-TYPE 62 10 20  2  6
D48V7, multiclass
D48V8, continuous
D48V9, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  5Q LOSS CNV             0        9         7       16
  5Q LOSS WILD-TYPE       1       27        37       32
D48V10, multiclass
           clus
vv          5Q LOSS CNV 5Q LOSS WILD-TYPE
  STAGE I             0                 1
  STAGE II            9                27
  STAGE III           7                37
  STAGE IV           16                32

Clustering(49) Variable = 6p loss
D49V1, survival
                   sevent
clus2                0  1
  6P LOSS CNV       13  5
  6P LOSS WILD-TYPE 80 29
      6P LOSS CNV 6P LOSS WILD-TYPE 
               18               109 
      6P LOSS CNV 6P LOSS WILD-TYPE 
                5                29 
$`6P LOSS CNV`
TCGA-BT-A20V TCGA-BT-A20X TCGA-BT-A3PH TCGA-CU-A3QU TCGA-DK-A1A7 TCGA-DK-A1AB 
        5.06         8.25         4.64         5.19         8.98         8.91 
TCGA-DK-A3IL TCGA-DK-A3IQ TCGA-DK-A3X2 TCGA-E5-A2PC TCGA-FD-A3SL TCGA-FD-A3SN 
        3.98        10.49        17.98        36.43        10.98         6.81 
TCGA-FD-A3SQ TCGA-FJ-A3ZF TCGA-GC-A3RB TCGA-GV-A3JW TCGA-GV-A3JZ TCGA-GV-A3QI 
       46.78         4.08         4.50         6.41         5.69         4.11 

$`6P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A2LA TCGA-BT-A2LD TCGA-C4-A0EZ 
       14.89         8.61         8.35         5.88         3.65         8.98 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN 
        1.94         2.01         0.46         0.43         0.69        12.92 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 
        4.90         7.20         5.46         8.09         2.53         2.14 
TCGA-DK-A1A6 TCGA-DK-A1AA TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF 
       31.40         7.04       118.88       100.47         7.17         5.85 
TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 
        6.64         1.81        10.59         7.76       123.85        75.32 
TCGA-DK-A3IK TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU 
        2.20         7.82         8.22        37.84         5.52        11.51 
TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-E7-A3Y1 
        9.67         8.28        10.55       131.15        41.03         0.10 
TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 
        8.81         8.32         8.94         6.87         4.01        11.05 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SM TCGA-FD-A3SO 
        8.94         7.96        32.02        24.30         6.12         5.49 
TCGA-FD-A3SP TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 
        4.54        19.79         1.94         7.89         6.84        15.16 
TCGA-FJ-A3ZE TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL 
        3.48         3.22        49.91        26.50         5.65        26.93 
TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM 
       32.78        17.26         7.04        20.12         0.82         2.86 
TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS 
        2.24         1.32         1.38         1.02         2.50         1.08 
TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q 
        7.69         2.10         3.12         5.82         6.38         7.56 
TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JX TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QK 
        3.22         4.37         6.15         7.63         7.79         6.64 
TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU 
        6.38         5.33         1.51         6.71         8.71         3.42 
TCGA-K4-A3WV 
        4.64 

      6P LOSS CNV 6P LOSS WILD-TYPE 
             3.98              0.10 
      6P LOSS CNV 6P LOSS WILD-TYPE 
            46.78            131.15 
      6P LOSS CNV 6P LOSS WILD-TYPE 
             6.61              7.04 
[1] "4.0 - 46.8 (6.6)"  "0.1 - 131.2 (7.0)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"6P LOSS WILD-TYPE"       "6P LOSS CNV"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"6P LOSS WILD-TYPE"       "6P LOSS CNV"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"6P LOSS WILD-TYPE"       "6P LOSS CNV"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D49V2, continuous
D49V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS CNV          5   14
  6P LOSS WILD-TYPE   29   86
        clus
vv       6P LOSS CNV 6P LOSS WILD-TYPE
  FEMALE           5                29
  MALE            14                86
D49V4, continuous
D49V5, continuous
                   vv
clus                M0 M1 MX
  6P LOSS CNV       10  1  8
  6P LOSS WILD-TYPE 67  4 43
D49V6, multiclass
    clus
vv   6P LOSS CNV 6P LOSS WILD-TYPE
  M0          10                67
  M1           1                 4
  MX           8                43
                   vv
clus                N0 N1 N2 N3 NX
  6P LOSS CNV        5  2  9  1  1
  6P LOSS WILD-TYPE 70 12 18  4  9
D49V7, multiclass
D49V8, continuous
D49V9, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  6P LOSS CNV             0        1         4       13
  6P LOSS WILD-TYPE       1       35        40       35
D49V10, multiclass
           clus
vv          6P LOSS CNV 6P LOSS WILD-TYPE
  STAGE I             0                 1
  STAGE II            1                35
  STAGE III           4                40
  STAGE IV           13                35

Clustering(50) Variable = 6q loss
D50V1, survival
                   sevent
clus2                0  1
  6Q LOSS CNV       21  5
  6Q LOSS WILD-TYPE 72 29
      6Q LOSS CNV 6Q LOSS WILD-TYPE 
               26               101 
      6Q LOSS CNV 6Q LOSS WILD-TYPE 
                5                29 
$`6Q LOSS CNV`
TCGA-BT-A20V TCGA-BT-A3PH TCGA-CU-A3QU TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AB 
        5.06         4.64         5.19        31.40         8.98         8.91 
TCGA-DK-A2I1 TCGA-DK-A3IL TCGA-DK-A3IQ TCGA-DK-A3X2 TCGA-E5-A2PC TCGA-FD-A3B5 
       10.59         3.98        10.49        17.98        36.43         8.94 
TCGA-FD-A3SL TCGA-FD-A3SN TCGA-FD-A3SQ TCGA-G2-A2ES TCGA-G2-A3VY TCGA-GC-A3RB 
       10.98         6.81        46.78        17.26         0.82         4.50 
TCGA-GC-A3RD TCGA-GU-A42R TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF 
        1.02         3.22         6.41         6.15         5.69         7.63 
TCGA-GV-A3QI TCGA-H4-A2HQ 
        4.11         6.71 

$`6Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD 
       14.89         8.61         8.35         8.25         5.88         3.65 
TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C 
        8.98         1.94         2.01         0.46         0.43         0.69 
TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3YL TCGA-DK-A1A3 
       12.92         4.90         7.20         5.46         8.09         2.53 
TCGA-DK-A1A5 TCGA-DK-A1AA TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF 
        2.14         7.04       118.88       100.47         7.17         5.85 
TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK 
        6.64         1.81         7.76       123.85        75.32         2.20 
TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV 
        7.82         8.22        37.84         5.52        11.51         9.67 
TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-E7-A3Y1 TCGA-FD-A3B3 
        8.28        10.55       131.15        41.03         0.10         8.81 
TCGA-FD-A3B4 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 
        8.32         6.87         4.01        11.05         8.94         7.96 
TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SM TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SR 
       32.02        24.30         6.12         5.49         4.54        19.79 
TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZE TCGA-FJ-A3ZF 
        1.94         7.89         6.84        15.16         3.48         4.08 
TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
        3.22        49.91        26.50         5.65        26.93        32.78 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RC 
        7.04        20.12         2.86         2.24         1.32         1.38 
TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS 
        2.50         1.08         7.69         2.10         3.12         5.82 
TCGA-GU-A42P TCGA-GU-A42Q TCGA-GV-A3JV TCGA-GV-A3QH TCGA-GV-A3QK TCGA-GV-A40E 
        6.38         7.56         4.37         7.79         6.64         6.38 
TCGA-GV-A40G TCGA-H4-A2HO TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        5.33         1.51         8.71         3.42         4.64 

      6Q LOSS CNV 6Q LOSS WILD-TYPE 
             0.82              0.10 
      6Q LOSS CNV 6Q LOSS WILD-TYPE 
            46.78            131.15 
      6Q LOSS CNV 6Q LOSS WILD-TYPE 
             6.76              7.04 
[1] "0.8 - 46.8 (6.8)"  "0.1 - 131.2 (7.0)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D50V2, continuous
D50V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS CNV          8   20
  6Q LOSS WILD-TYPE   26   80
        clus
vv       6Q LOSS CNV 6Q LOSS WILD-TYPE
  FEMALE           8                26
  MALE            20                80
D50V4, continuous
D50V5, continuous
                   vv
clus                M0 M1 MX
  6Q LOSS CNV       13  2 12
  6Q LOSS WILD-TYPE 64  3 39
D50V6, multiclass
    clus
vv   6Q LOSS CNV 6Q LOSS WILD-TYPE
  M0          13                64
  M1           2                 3
  MX          12                39
                   vv
clus                N0 N1 N2 N3 NX
  6Q LOSS CNV        9  4  9  1  2
  6Q LOSS WILD-TYPE 66 10 18  4  8
D50V7, multiclass
D50V8, continuous
D50V9, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  6Q LOSS CNV             0        6         5       16
  6Q LOSS WILD-TYPE       1       30        39       32
D50V10, multiclass
           clus
vv          6Q LOSS CNV 6Q LOSS WILD-TYPE
  STAGE I             0                 1
  STAGE II            6                30
  STAGE III           5                39
  STAGE IV           16                32

Clustering(51) Variable = 8p loss
D51V1, survival
                   sevent
clus2                0  1
  8P LOSS CNV       36  9
  8P LOSS WILD-TYPE 57 25
      8P LOSS CNV 8P LOSS WILD-TYPE 
               45                82 
      8P LOSS CNV 8P LOSS WILD-TYPE 
                9                25 
$`8P LOSS CNV`
TCGA-BL-A13J TCGA-BT-A20W TCGA-C4-A0EZ TCGA-CF-A1HS TCGA-CU-A3QU TCGA-DK-A1A3 
        2.66         8.35         8.98         0.43         5.19         2.53 
TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A2I1 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK 
      118.88       100.47        10.59       123.85        75.32         2.20 
TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IT TCGA-DK-A3IV TCGA-FD-A3B4 
        3.98         7.82         8.22         5.52         9.67         8.32 
TCGA-FD-A3B6 TCGA-FD-A3N5 TCGA-FD-A3SJ TCGA-FD-A3SM TCGA-FD-A3SO TCGA-FD-A3SR 
        6.87         8.94        24.30         6.12         5.49        19.79 
TCGA-FD-A43N TCGA-FJ-A3ZF TCGA-G2-A2EF TCGA-G2-A2EK TCGA-G2-A3IE TCGA-GC-A3RB 
        7.89         4.08        49.91         5.65        20.12         4.50 
TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GU-A42P TCGA-GV-A3JW 
        1.38         1.02         1.08         7.69         6.38         6.41 
TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A40E TCGA-GV-A40G 
        6.15         5.69         7.63         7.79         6.38         5.33 
TCGA-H4-A2HQ TCGA-K4-A3WU TCGA-K4-A3WV 
        6.71         3.42         4.64 

$`8P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J 
       12.79         7.33         6.74         6.58        11.93        19.00 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T 
       26.10        12.16        17.85        19.46         5.06        14.89 
TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH 
        8.61         5.06         8.25         5.88         3.65         4.64 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO 
        1.94         2.01         0.46         0.69        12.92         4.90 
TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3YL TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 
        7.20         5.46         8.09         2.14        31.40         8.98 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX 
        7.04         8.91         7.17         5.85         6.64         1.81 
TCGA-DK-A2I2 TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IU TCGA-DK-A3WW TCGA-DK-A3WX 
        7.76        10.49        37.84        11.51         8.28        10.55 
TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 
      131.15        41.03        17.98        36.43         0.10         8.81 
TCGA-FD-A3B5 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SL 
        8.94         4.01        11.05         7.96        32.02        10.98 
TCGA-FD-A3SN TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SS TCGA-FD-A43U TCGA-FJ-A3Z7 
        6.81         4.54        46.78         1.94         6.84        15.16 
TCGA-FJ-A3ZE TCGA-FT-A3EE TCGA-G2-A2EJ TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES 
        3.48         3.22        26.50        26.93        32.78        17.26 
TCGA-G2-A3IB TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3WC 
        7.04         0.82         2.86         2.24         1.32         2.50 
TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV 
        2.10         3.12         5.82         7.56         3.22         4.37 
TCGA-GV-A3QI TCGA-GV-A3QK TCGA-H4-A2HO TCGA-K4-A3WS 
        4.11         6.64         1.51         8.71 

      8P LOSS CNV 8P LOSS WILD-TYPE 
             0.43              0.10 
      8P LOSS CNV 8P LOSS WILD-TYPE 
           123.85            131.15 
      8P LOSS CNV 8P LOSS WILD-TYPE 
            6.410             7.185 
[1] "0.4 - 123.8 (6.4)" "0.1 - 131.2 (7.2)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
      "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
      "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
      "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
      "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
      "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
      "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
[1] "hr=" "1.5"
D51V2, continuous
D51V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS CNV          9   37
  8P LOSS WILD-TYPE   25   63
        clus
vv       8P LOSS CNV 8P LOSS WILD-TYPE
  FEMALE           9                25
  MALE            37                63
D51V4, continuous
D51V5, continuous
                   vv
clus                M0 M1 MX
  8P LOSS CNV       23  3 20
  8P LOSS WILD-TYPE 54  2 31
D51V6, multiclass
    clus
vv   8P LOSS CNV 8P LOSS WILD-TYPE
  M0          23                54
  M1           3                 2
  MX          20                31
                   vv
clus                N0 N1 N2 N3 NX
  8P LOSS CNV       22  6 10  2  6
  8P LOSS WILD-TYPE 53  8 17  3  4
D51V7, multiclass
D51V8, continuous
D51V9, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  8P LOSS CNV             0       14        11       19
  8P LOSS WILD-TYPE       1       22        33       29
D51V10, multiclass
           clus
vv          8P LOSS CNV 8P LOSS WILD-TYPE
  STAGE I             0                 1
  STAGE II           14                22
  STAGE III          11                33
  STAGE IV           19                29

Clustering(52) Variable = 8q loss
D52V1, survival
                   sevent
clus2                0  1
  8Q LOSS CNV        5  1
  8Q LOSS WILD-TYPE 88 33
      8Q LOSS CNV 8Q LOSS WILD-TYPE 
                6               121 
      8Q LOSS CNV 8Q LOSS WILD-TYPE 
                1                33 
$`8Q LOSS CNV`
TCGA-DK-A3IL TCGA-DK-A3IM TCGA-FD-A3SR TCGA-GU-A42P TCGA-H4-A2HQ TCGA-K4-A3WU 
        3.98         7.82        19.79         6.38         6.71         3.42 

$`8Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
       14.89         8.61         5.06         8.35         8.25         5.88 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR 
        3.65         4.64         8.98         1.94         2.01         0.46 
TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ 
        0.43         0.69        12.92         4.90         7.20         5.46 
TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 
        5.19         8.09         2.53         2.14        31.40         8.98 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF 
        7.04         8.91       118.88       100.47         7.17         5.85 
TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 
        6.64         1.81        10.59         7.76       123.85        75.32 
TCGA-DK-A3IK TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU 
        2.20         8.22        10.49        37.84         5.52        11.51 
TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 
        9.67         8.28        10.55       131.15        41.03        17.98 
TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 
       36.43         0.10         8.81         8.32         8.94         6.87 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ 
        4.01        11.05         8.94         7.96        32.02        24.30 
TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ 
       10.98         6.12         6.81         5.49         4.54        46.78 
TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZE TCGA-FJ-A3ZF 
        1.94         7.89         6.84        15.16         3.48         4.08 
TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
        3.22        49.91        26.50         5.65        26.93        32.78 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 
       17.26         7.04        20.12         0.82         2.86         2.24 
TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS 
        1.32         4.50         1.38         1.02         2.50         1.08 
TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42Q TCGA-GU-A42R 
        7.69         2.10         3.12         5.82         7.56         3.22 
TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH 
        4.37         6.41         6.15         5.69         7.63         7.79 
TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-K4-A3WS 
        4.11         6.64         6.38         5.33         1.51         8.71 
TCGA-K4-A3WV 
        4.64 

      8Q LOSS CNV 8Q LOSS WILD-TYPE 
             3.42              0.10 
      8Q LOSS CNV 8Q LOSS WILD-TYPE 
            19.79            131.15 
      8Q LOSS CNV 8Q LOSS WILD-TYPE 
            6.545             7.040 
[1] "3.4 - 19.8 (6.5)"  "0.1 - 131.2 (7.0)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D52V2, continuous
D52V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS CNV          2    4
  8Q LOSS WILD-TYPE   32   96
        clus
vv       8Q LOSS CNV 8Q LOSS WILD-TYPE
  FEMALE           2                32
  MALE             4                96
D52V4, continuous
D52V5, continuous
                   vv
clus                M0 M1 MX
  8Q LOSS CNV        3  1  2
  8Q LOSS WILD-TYPE 74  4 49
D52V6, multiclass
    clus
vv   8Q LOSS CNV 8Q LOSS WILD-TYPE
  M0           3                74
  M1           1                 4
  MX           2                49
                   vv
clus                N0 N1 N2 N3 NX
  8Q LOSS CNV        2  1  2  0  1
  8Q LOSS WILD-TYPE 73 13 25  5  9
D52V7, multiclass
D52V8, continuous
D52V9, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  8Q LOSS CNV             0        0         1        4
  8Q LOSS WILD-TYPE       1       36        43       44
D52V10, multiclass
           clus
vv          8Q LOSS CNV 8Q LOSS WILD-TYPE
  STAGE I             0                 1
  STAGE II            0                36
  STAGE III           1                43
  STAGE IV            4                44

Clustering(53) Variable = 9p loss
D53V1, survival
                   sevent
clus2                0  1
  9P LOSS CNV       24  9
  9P LOSS WILD-TYPE 69 25
      9P LOSS CNV 9P LOSS WILD-TYPE 
               33                94 
      9P LOSS CNV 9P LOSS WILD-TYPE 
                9                25 
$`9P LOSS CNV`
TCGA-BT-A20N TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20T TCGA-BT-A20W TCGA-C4-A0F0 
       26.10        17.85        19.46        14.89         8.35         1.94 
TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A27C TCGA-CU-A3KJ TCGA-DK-A1A3 TCGA-DK-A1A5 
        2.01         0.46         0.69         5.46         2.53         2.14 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AG TCGA-DK-A3IK TCGA-DK-A3IQ TCGA-DK-A3IS 
        7.04         8.91         6.64         2.20        10.49        37.84 
TCGA-DK-A3IT TCGA-DK-A3X1 TCGA-E5-A2PC TCGA-FD-A3B5 TCGA-FD-A3SM TCGA-FD-A3SN 
        5.52        41.03        36.43         8.94         6.12         6.81 
TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-G2-A2EO TCGA-G2-A3IB TCGA-G2-A3VY TCGA-GC-A3RD 
       46.78        19.79        32.78         7.04         0.82         1.02 
TCGA-GV-A3JW TCGA-GV-A3QK TCGA-K4-A3WV 
        6.41         6.64         4.64 

$`9P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20O TCGA-BT-A20R TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20X 
       19.00        12.16         5.06         8.61         5.06         8.25 
TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-CF-A1HS TCGA-CU-A0YN 
        5.88         3.65         4.64         8.98         0.43        12.92 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A6 TCGA-DK-A1A7 
        4.90         7.20         5.19         8.09        31.40         8.98 
TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A2HX TCGA-DK-A2I1 
      118.88       100.47         7.17         5.85         1.81        10.59 
TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN 
        7.76       123.85        75.32         3.98         7.82         8.22 
TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X2 
       11.51         9.67         8.28        10.55       131.15        17.98 
TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 
        0.10         8.81         8.32         6.87         4.01        11.05 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SO 
        8.94         7.96        32.02        24.30        10.98         5.49 
TCGA-FD-A3SP TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZE 
        4.54         1.94         7.89         6.84        15.16         3.48 
TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL 
        4.08         3.22        49.91        26.50         5.65        26.93 
TCGA-G2-A2ES TCGA-G2-A3IE TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB 
       17.26        20.12         2.86         2.24         1.32         4.50 
TCGA-GC-A3RC TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ 
        1.38         2.50         1.08         7.69         2.10         3.12 
TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JX 
        5.82         6.38         7.56         3.22         4.37         6.15 
TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A40E TCGA-GV-A40G 
        5.69         7.63         7.79         4.11         6.38         5.33 
TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU 
        1.51         6.71         8.71         3.42 

      9P LOSS CNV 9P LOSS WILD-TYPE 
             0.46              0.10 
      9P LOSS CNV 9P LOSS WILD-TYPE 
            46.78            131.15 
      9P LOSS CNV 9P LOSS WILD-TYPE 
            6.810             7.185 
[1] "0.5 - 46.8 (6.8)"  "0.1 - 131.2 (7.2)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
      "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
      "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
      "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
[1] "hr=" "1.2"
D53V2, continuous
D53V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS CNV          8   31
  9P LOSS WILD-TYPE   26   69
        clus
vv       9P LOSS CNV 9P LOSS WILD-TYPE
  FEMALE           8                26
  MALE            31                69
D53V4, continuous
D53V5, continuous
                   vv
clus                M0 M1 MX
  9P LOSS CNV       27  1 10
  9P LOSS WILD-TYPE 50  4 41
D53V6, multiclass
    clus
vv   9P LOSS CNV 9P LOSS WILD-TYPE
  M0          27                50
  M1           1                 4
  MX          10                41
                   vv
clus                N0 N1 N2 N3 NX
  9P LOSS CNV       23  3  8  0  3
  9P LOSS WILD-TYPE 52 11 19  5  7
D53V7, multiclass
D53V8, continuous
D53V9, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  9P LOSS CNV             0       12        12       12
  9P LOSS WILD-TYPE       1       24        32       36
D53V10, multiclass
           clus
vv          9P LOSS CNV 9P LOSS WILD-TYPE
  STAGE I             0                 1
  STAGE II           12                24
  STAGE III          12                32
  STAGE IV           12                36

Clustering(54) Variable = 9q loss
D54V1, survival
                   sevent
clus2                0  1
  9Q LOSS CNV       22  9
  9Q LOSS WILD-TYPE 71 25
      9Q LOSS CNV 9Q LOSS WILD-TYPE 
               31                96 
      9Q LOSS CNV 9Q LOSS WILD-TYPE 
                9                25 
$`9Q LOSS CNV`
TCGA-BT-A20N TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20T TCGA-C4-A0F6 TCGA-CF-A1HR 
       26.10        17.85        19.46        14.89         2.01         0.46 
TCGA-CF-A27C TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-DK-A1A5 TCGA-DK-A1AA TCGA-DK-A1AG 
        0.69         5.46         5.19         2.14         7.04         6.64 
TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-E5-A2PC TCGA-FD-A3B5 TCGA-FD-A3SM 
       10.49        37.84         5.52        36.43         8.94         6.12 
TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A3VY 
       46.78        19.79         5.65        26.93        32.78         0.82 
TCGA-GC-A3BM TCGA-GC-A3RD TCGA-GD-A2C5 TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A40G 
        2.86         1.02         7.69         4.37         6.41         5.33 
TCGA-K4-A3WV 
        4.64 

$`9Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20O TCGA-BT-A20R TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W 
       19.00        12.16         5.06         8.61         5.06         8.35 
TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 
        8.25         5.88         3.65         4.64         8.98         1.94 
TCGA-CF-A1HS TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3YL TCGA-DK-A1A3 
        0.43        12.92         4.90         7.20         8.09         2.53 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE 
       31.40         8.98         8.91       118.88       100.47         7.17 
TCGA-DK-A1AF TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 
        5.85         1.81        10.59         7.76       123.85        75.32 
TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IU TCGA-DK-A3IV 
        2.20         3.98         7.82         8.22        11.51         9.67 
TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-E7-A3Y1 
        8.28        10.55       131.15        41.03        17.98         0.10 
TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 
        8.81         8.32         6.87         4.01        11.05         8.94 
TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SN TCGA-FD-A3SO 
        7.96        32.02        24.30        10.98         6.81         5.49 
TCGA-FD-A3SP TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZE 
        4.54         1.94         7.89         6.84        15.16         3.48 
TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2ES TCGA-G2-A3IB 
        4.08         3.22        49.91        26.50        17.26         7.04 
TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3WC 
       20.12         2.24         1.32         4.50         1.38         2.50 
TCGA-GC-A3YS TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q 
        1.08         2.10         3.12         5.82         6.38         7.56 
TCGA-GU-A42R TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI 
        3.22         6.15         5.69         7.63         7.79         4.11 
TCGA-GV-A3QK TCGA-GV-A40E TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU 
        6.64         6.38         1.51         6.71         8.71         3.42 

      9Q LOSS CNV 9Q LOSS WILD-TYPE 
             0.46              0.10 
      9Q LOSS CNV 9Q LOSS WILD-TYPE 
            46.78            131.15 
      9Q LOSS CNV 9Q LOSS WILD-TYPE 
            6.410             7.185 
[1] "0.5 - 46.8 (6.4)"  "0.1 - 131.2 (7.2)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
      "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
      "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
      "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
[1] "hr=" "1.1"
D54V2, continuous
D54V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS CNV          6   30
  9Q LOSS WILD-TYPE   28   70
        clus
vv       9Q LOSS CNV 9Q LOSS WILD-TYPE
  FEMALE           6                28
  MALE            30                70
D54V4, continuous
D54V5, continuous
                   vv
clus                M0 M1 MX
  9Q LOSS CNV       23  1 11
  9Q LOSS WILD-TYPE 54  4 40
D54V6, multiclass
    clus
vv   9Q LOSS CNV 9Q LOSS WILD-TYPE
  M0          23                54
  M1           1                 4
  MX          11                40
                   vv
clus                N0 N1 N2 N3 NX
  9Q LOSS CNV       22  5  6  0  2
  9Q LOSS WILD-TYPE 53  9 21  5  8
D54V7, multiclass
D54V8, continuous
D54V9, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  9Q LOSS CNV             0       12        11       10
  9Q LOSS WILD-TYPE       1       24        33       38
D54V10, multiclass
           clus
vv          9Q LOSS CNV 9Q LOSS WILD-TYPE
  STAGE I             0                 1
  STAGE II           12                24
  STAGE III          11                33
  STAGE IV           10                38

Clustering(55) Variable = 10p loss
D55V1, survival
                    sevent
clus2                 0  1
  10P LOSS CNV       16  3
  10P LOSS WILD-TYPE 77 31
      10P LOSS CNV 10P LOSS WILD-TYPE 
                19                108 
      10P LOSS CNV 10P LOSS WILD-TYPE 
                 3                 31 
$`10P LOSS CNV`
TCGA-BT-A2LA TCGA-BT-A2LD TCGA-C4-A0F0 TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-E5-A2PC 
        5.88         3.65         1.94         7.20         5.46        36.43 
TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3N5 TCGA-FD-A3SR TCGA-FJ-A3Z7 TCGA-FJ-A3ZE 
        8.32         8.94         8.94        19.79        15.16         3.48 
TCGA-G2-A2EL TCGA-GC-A3BM TCGA-GC-A3RC TCGA-GV-A3JX TCGA-GV-A3QI TCGA-GV-A40G 
       26.93         2.86         1.38         6.15         4.11         5.33 
TCGA-H4-A2HQ 
        6.71 

$`10P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A3PH 
       14.89         8.61         5.06         8.35         8.25         4.64 
TCGA-C4-A0EZ TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN 
        8.98         2.01         0.46         0.43         0.69        12.92 
TCGA-CU-A0YO TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 
        4.90         5.19         8.09         2.53         2.14        31.40 
TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE 
        8.98         7.04         8.91       118.88       100.47         7.17 
TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 
        5.85         6.64         1.81        10.59         7.76       123.85 
TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ 
       75.32         2.20         3.98         7.82         8.22        10.49 
TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX 
       37.84         5.52        11.51         9.67         8.28        10.55 
TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B6 
      131.15        41.03        17.98         0.10         8.81         6.87 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL 
        4.01        11.05         7.96        32.02        24.30        10.98 
TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SS 
        6.12         6.81         5.49         4.54        46.78         1.94 
TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ 
        7.89         6.84         4.08         3.22        49.91        26.50 
TCGA-G2-A2EK TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY 
        5.65        32.78        17.26         7.04        20.12         0.82 
TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS 
        2.24         1.32         4.50         1.02         2.50         1.08 
TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q 
        7.69         2.10         3.12         5.82         6.38         7.56 
TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH 
        3.22         4.37         6.41         5.69         7.63         7.79 
TCGA-GV-A3QK TCGA-GV-A40E TCGA-H4-A2HO TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        6.64         6.38         1.51         8.71         3.42         4.64 

      10P LOSS CNV 10P LOSS WILD-TYPE 
              1.38               0.10 
      10P LOSS CNV 10P LOSS WILD-TYPE 
             36.43             131.15 
      10P LOSS CNV 10P LOSS WILD-TYPE 
             6.150              7.105 
[1] "1.4 - 36.4 (6.2)"  "0.1 - 131.2 (7.1)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"10P LOSS WILD-TYPE"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
      "10P LOSS CNV"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"10P LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"10P LOSS WILD-TYPE"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
      "10P LOSS CNV"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"10P LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"10P LOSS WILD-TYPE"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
      "10P LOSS CNV"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"10P LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D55V2, continuous
D55V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS CNV          4   15
  10P LOSS WILD-TYPE   30   85
        clus
vv       10P LOSS CNV 10P LOSS WILD-TYPE
  FEMALE            4                 30
  MALE             15                 85
D55V4, continuous
D55V5, continuous
                    vv
clus                 M0 M1 MX
  10P LOSS CNV        8  2  9
  10P LOSS WILD-TYPE 69  3 42
D55V6, multiclass
    clus
vv   10P LOSS CNV 10P LOSS WILD-TYPE
  M0            8                 69
  M1            2                  3
  MX            9                 42
                    vv
clus                 N0 N1 N2 N3 NX
  10P LOSS CNV       11  3  3  1  1
  10P LOSS WILD-TYPE 64 11 24  4  9
D55V7, multiclass
D55V8, continuous
D55V9, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  10P LOSS CNV             0        6         5        8
  10P LOSS WILD-TYPE       1       30        39       40
D55V10, multiclass
           clus
vv          10P LOSS CNV 10P LOSS WILD-TYPE
  STAGE I              0                  1
  STAGE II             6                 30
  STAGE III            5                 39
  STAGE IV             8                 40

Clustering(56) Variable = 10q loss
D56V1, survival
                    sevent
clus2                 0  1
  10Q LOSS CNV       25  2
  10Q LOSS WILD-TYPE 68 32
      10Q LOSS CNV 10Q LOSS WILD-TYPE 
                27                100 
      10Q LOSS CNV 10Q LOSS WILD-TYPE 
                 2                 32 
$`10Q LOSS CNV`
TCGA-BT-A2LD TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU 
        3.65         1.94         2.01         7.20         5.46         5.19 
TCGA-DK-A1A5 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3X1 TCGA-E5-A2PC 
        2.14         2.20         3.98         7.82        41.03        36.43 
TCGA-FD-A3N5 TCGA-FD-A3SR TCGA-FJ-A3Z7 TCGA-FJ-A3ZE TCGA-G2-A3VY TCGA-GC-A3BM 
        8.94        19.79        15.16         3.48         0.82         2.86 
TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3QF 
        1.38         1.02         2.50         6.41         6.15         7.63 
TCGA-GV-A3QI TCGA-GV-A40G TCGA-H4-A2HQ 
        4.11         5.33         6.71 

$`10Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
       14.89         8.61         5.06         8.35         8.25         5.88 
TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN 
        4.64         8.98         0.46         0.43         0.69        12.92 
TCGA-CU-A0YO TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA 
        4.90         8.09         2.53        31.40         8.98         7.04 
TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
        8.91       118.88       100.47         7.17         5.85         6.64 
TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IN 
        1.81        10.59         7.76       123.85        75.32         8.22 
TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW 
       10.49        37.84         5.52        11.51         9.67         8.28 
TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X2 TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 
       10.55       131.15        17.98         0.10         8.81         8.32 
TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N6 TCGA-FD-A3NA 
        8.94         6.87         4.01        11.05         7.96        32.02 
TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP 
       24.30        10.98         6.12         6.81         5.49         4.54 
TCGA-FD-A3SQ TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3ZF TCGA-FT-A3EE 
       46.78         1.94         7.89         6.84         4.08         3.22 
TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES 
       49.91        26.50         5.65        26.93        32.78        17.26 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3YS 
        7.04        20.12         2.24         1.32         4.50         1.08 
TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q 
        7.69         2.10         3.12         5.82         6.38         7.56 
TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-GV-A3QK TCGA-GV-A40E 
        3.22         4.37         5.69         7.79         6.64         6.38 
TCGA-H4-A2HO TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        1.51         8.71         3.42         4.64 

      10Q LOSS CNV 10Q LOSS WILD-TYPE 
              0.82               0.10 
      10Q LOSS CNV 10Q LOSS WILD-TYPE 
             41.03             131.15 
      10Q LOSS CNV 10Q LOSS WILD-TYPE 
             5.190              7.725 
[1] "0.8 - 41.0 (5.2)"  "0.1 - 131.2 (7.7)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"10Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"10Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"10Q LOSS WILD-TYPE" 
[1] "hr=" "2.4"
D56V2, continuous
D56V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS CNV          8   20
  10Q LOSS WILD-TYPE   26   80
        clus
vv       10Q LOSS CNV 10Q LOSS WILD-TYPE
  FEMALE            8                 26
  MALE             20                 80
D56V4, continuous
D56V5, continuous
                    vv
clus                 M0 M1 MX
  10Q LOSS CNV       15  2 10
  10Q LOSS WILD-TYPE 62  3 41
D56V6, multiclass
    clus
vv   10Q LOSS CNV 10Q LOSS WILD-TYPE
  M0           15                 62
  M1            2                  3
  MX           10                 41
                    vv
clus                 N0 N1 N2 N3 NX
  10Q LOSS CNV       14  3  6  1  3
  10Q LOSS WILD-TYPE 61 11 21  4  7
D56V7, multiclass
D56V8, continuous
D56V9, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  10Q LOSS CNV             0        9         8       11
  10Q LOSS WILD-TYPE       1       27        36       37
D56V10, multiclass
           clus
vv          10Q LOSS CNV 10Q LOSS WILD-TYPE
  STAGE I              0                  1
  STAGE II             9                 27
  STAGE III            8                 36
  STAGE IV            11                 37

Clustering(57) Variable = 11p loss
D57V1, survival
                    sevent
clus2                 0  1
  11P LOSS CNV       28 10
  11P LOSS WILD-TYPE 65 24
      11P LOSS CNV 11P LOSS WILD-TYPE 
                38                 89 
      11P LOSS CNV 11P LOSS WILD-TYPE 
                10                 24 
$`11P LOSS CNV`
TCGA-BT-A20N TCGA-BT-A20T TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A3PH TCGA-C4-A0EZ 
       26.10        14.89         5.06         8.35         4.64         8.98 
TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A27C TCGA-CU-A3KJ TCGA-DK-A1A5 TCGA-DK-A1A6 
        2.01         0.46         0.69         5.46         2.14        31.40 
TCGA-DK-A1AB TCGA-DK-A1AD TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I6 TCGA-DK-A3IK 
        8.91       100.47         1.81        10.59        75.32         2.20 
TCGA-DK-A3IL TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3X2 TCGA-E5-A2PC TCGA-FD-A3B5 
        3.98        37.84         5.52        17.98        36.43         8.94 
TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SN TCGA-FD-A3SS TCGA-FJ-A3ZE TCGA-G2-A2ES 
       24.30        10.98         6.81         1.94         3.48        17.26 
TCGA-GC-A3BM TCGA-GC-A3RD TCGA-GD-A2C5 TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JW 
        2.86         1.02         7.69         7.56         3.22         6.41 
TCGA-GV-A40G TCGA-H4-A2HQ 
        5.33         6.71 

$`11P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20U 
       19.00        12.16        17.85        19.46         5.06         8.61 
TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-C4-A0F0 TCGA-CF-A1HS TCGA-CU-A0YN 
        8.25         5.88         3.65         1.94         0.43        12.92 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A7 
        4.90         7.20         5.19         8.09         2.53         8.98 
TCGA-DK-A1AA TCGA-DK-A1AC TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I2 
        7.04       118.88         7.17         5.85         6.64         7.76 
TCGA-DK-A2I4 TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IU TCGA-DK-A3IV 
      123.85         7.82         8.22        10.49        11.51         9.67 
TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-E7-A3Y1 TCGA-FD-A3B3 
        8.28        10.55       131.15        41.03         0.10         8.81 
TCGA-FD-A3B4 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 
        8.32         6.87         4.01        11.05         8.94         7.96 
TCGA-FD-A3NA TCGA-FD-A3SM TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR 
       32.02         6.12         5.49         4.54        46.78        19.79 
TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-G2-A2EF 
        7.89         6.84        15.16         4.08         3.22        49.91 
TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A3IB TCGA-G2-A3IE 
       26.50         5.65        26.93        32.78         7.04        20.12 
TCGA-G2-A3VY TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3WC 
        0.82         2.24         1.32         4.50         1.38         2.50 
TCGA-GC-A3YS TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GV-A3JV 
        1.08         2.10         3.12         5.82         6.38         4.37 
TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK 
        6.15         5.69         7.63         7.79         4.11         6.64 
TCGA-GV-A40E TCGA-H4-A2HO TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        6.38         1.51         8.71         3.42         4.64 

      11P LOSS CNV 11P LOSS WILD-TYPE 
              0.46               0.10 
      11P LOSS CNV 11P LOSS WILD-TYPE 
            100.47             131.15 
      11P LOSS CNV 11P LOSS WILD-TYPE 
              6.76               7.04 
[1] "0.5 - 100.5 (6.8)" "0.1 - 131.2 (7.0)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
      "11P LOSS CNV" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"11P LOSS WILD-TYPE"       "11P LOSS CNV"       "11P LOSS CNV" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"11P LOSS WILD-TYPE"       "11P LOSS CNV"       "11P LOSS CNV" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
      "11P LOSS CNV"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"11P LOSS WILD-TYPE"       "11P LOSS CNV"       "11P LOSS CNV" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
      "11P LOSS CNV"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"11P LOSS WILD-TYPE"       "11P LOSS CNV"       "11P LOSS CNV" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"11P LOSS WILD-TYPE"       "11P LOSS CNV"       "11P LOSS CNV" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
      "11P LOSS CNV" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"11P LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
      "11P LOSS CNV" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"11P LOSS WILD-TYPE"       "11P LOSS CNV"       "11P LOSS CNV" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"11P LOSS WILD-TYPE"       "11P LOSS CNV"       "11P LOSS CNV" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
      "11P LOSS CNV"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"11P LOSS WILD-TYPE"       "11P LOSS CNV"       "11P LOSS CNV" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
      "11P LOSS CNV"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"11P LOSS WILD-TYPE"       "11P LOSS CNV"       "11P LOSS CNV" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"11P LOSS WILD-TYPE"       "11P LOSS CNV"       "11P LOSS CNV" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
      "11P LOSS CNV" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"11P LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
      "11P LOSS CNV" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"11P LOSS WILD-TYPE"       "11P LOSS CNV"       "11P LOSS CNV" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"11P LOSS WILD-TYPE"       "11P LOSS CNV"       "11P LOSS CNV" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
      "11P LOSS CNV"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"11P LOSS WILD-TYPE"       "11P LOSS CNV"       "11P LOSS CNV" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
      "11P LOSS CNV"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"11P LOSS WILD-TYPE"       "11P LOSS CNV"       "11P LOSS CNV" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"11P LOSS WILD-TYPE"       "11P LOSS CNV"       "11P LOSS CNV" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
      "11P LOSS CNV" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"11P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D57V2, continuous
D57V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS CNV         11   33
  11P LOSS WILD-TYPE   23   67
        clus
vv       11P LOSS CNV 11P LOSS WILD-TYPE
  FEMALE           11                 23
  MALE             33                 67
D57V4, continuous
D57V5, continuous
                    vv
clus                 M0 M1 MX
  11P LOSS CNV       28  4 12
  11P LOSS WILD-TYPE 49  1 39
D57V6, multiclass
    clus
vv   11P LOSS CNV 11P LOSS WILD-TYPE
  M0           28                 49
  M1            4                  1
  MX           12                 39
                    vv
clus                 N0 N1 N2 N3 NX
  11P LOSS CNV       20  6 11  2  3
  11P LOSS WILD-TYPE 55  8 16  3  7
D57V7, multiclass
D57V8, continuous
D57V9, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  11P LOSS CNV             0       13         7       21
  11P LOSS WILD-TYPE       1       23        37       27
D57V10, multiclass
           clus
vv          11P LOSS CNV 11P LOSS WILD-TYPE
  STAGE I              0                  1
  STAGE II            13                 23
  STAGE III            7                 37
  STAGE IV            21                 27

Clustering(58) Variable = 11q loss
D58V1, survival
                    sevent
clus2                 0  1
  11Q LOSS CNV       17 10
  11Q LOSS WILD-TYPE 76 24
      11Q LOSS CNV 11Q LOSS WILD-TYPE 
                27                100 
      11Q LOSS CNV 11Q LOSS WILD-TYPE 
                10                 24 
$`11Q LOSS CNV`
TCGA-BT-A20N TCGA-BT-A20T TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A2LA TCGA-BT-A3PH 
       26.10        14.89         5.06         8.35         5.88         4.64 
TCGA-C4-A0EZ TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A3KJ TCGA-DK-A1A5 TCGA-DK-A1A6 
        8.98         0.43         0.69         5.46         2.14        31.40 
TCGA-DK-A1AB TCGA-DK-A1AD TCGA-DK-A2I6 TCGA-DK-A3IN TCGA-DK-A3IS TCGA-E5-A2PC 
        8.91       100.47        75.32         8.22        37.84        36.43 
TCGA-FD-A3B5 TCGA-FD-A3SJ TCGA-G2-A2ES TCGA-GC-A3BM TCGA-GD-A2C5 TCGA-GU-A42Q 
        8.94        24.30        17.26         2.86         7.69         7.56 
TCGA-GV-A3JW TCGA-GV-A3QK TCGA-GV-A40G 
        6.41         6.64         5.33 

$`11Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20U 
       19.00        12.16        17.85        19.46         5.06         8.61 
TCGA-BT-A20X TCGA-BT-A2LD TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CU-A0YN 
        8.25         3.65         1.94         2.01         0.46        12.92 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A7 
        4.90         7.20         5.19         8.09         2.53         8.98 
TCGA-DK-A1AA TCGA-DK-A1AC TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX 
        7.04       118.88         7.17         5.85         6.64         1.81 
TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM 
       10.59         7.76       123.85         2.20         3.98         7.82 
TCGA-DK-A3IQ TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX 
       10.49         5.52        11.51         9.67         8.28        10.55 
TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 
      131.15        41.03        17.98         0.10         8.81         8.32 
TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA 
        6.87         4.01        11.05         8.94         7.96        32.02 
TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ 
       10.98         6.12         6.81         5.49         4.54        46.78 
TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZE 
       19.79         1.94         7.89         6.84        15.16         3.48 
TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL 
        4.08         3.22        49.91        26.50         5.65        26.93 
TCGA-G2-A2EO TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3I6 TCGA-GC-A3OO 
       32.78         7.04        20.12         0.82         2.24         1.32 
TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A3OP 
        4.50         1.38         1.02         2.50         1.08         2.10 
TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JX 
        3.12         5.82         6.38         3.22         4.37         6.15 
TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A40E TCGA-H4-A2HO 
        5.69         7.63         7.79         4.11         6.38         1.51 
TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        6.71         8.71         3.42         4.64 

      11Q LOSS CNV 11Q LOSS WILD-TYPE 
              0.43               0.10 
      11Q LOSS CNV 11Q LOSS WILD-TYPE 
            100.47             131.15 
      11Q LOSS CNV 11Q LOSS WILD-TYPE 
             8.220              6.825 
[1] "0.4 - 100.5 (8.2)" "0.1 - 131.2 (6.8)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV"       "11Q LOSS CNV" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
      "11Q LOSS CNV"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
      "11Q LOSS CNV"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"11Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV"       "11Q LOSS CNV" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
      "11Q LOSS CNV"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
      "11Q LOSS CNV"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"11Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV"       "11Q LOSS CNV" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
      "11Q LOSS CNV"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
      "11Q LOSS CNV"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"11Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D58V2, continuous
D58V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS CNV          7   24
  11Q LOSS WILD-TYPE   27   76
        clus
vv       11Q LOSS CNV 11Q LOSS WILD-TYPE
  FEMALE            7                 27
  MALE             24                 76
D58V4, continuous
D58V5, continuous
                    vv
clus                 M0 M1 MX
  11Q LOSS CNV       21  1  9
  11Q LOSS WILD-TYPE 56  4 42
D58V6, multiclass
    clus
vv   11Q LOSS CNV 11Q LOSS WILD-TYPE
  M0           21                 56
  M1            1                  4
  MX            9                 42
                    vv
clus                 N0 N1 N2 N3 NX
  11Q LOSS CNV       16  6  7  0  1
  11Q LOSS WILD-TYPE 59  8 20  5  9
D58V7, multiclass
D58V8, continuous
D58V9, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  11Q LOSS CNV             0        9         6       13
  11Q LOSS WILD-TYPE       1       27        38       35
D58V10, multiclass
           clus
vv          11Q LOSS CNV 11Q LOSS WILD-TYPE
  STAGE I              0                  1
  STAGE II             9                 27
  STAGE III            6                 38
  STAGE IV            13                 35

Clustering(59) Variable = 12p loss
D59V1, survival
                    sevent
clus2                 0  1
  12P LOSS CNV        3  1
  12P LOSS WILD-TYPE 90 33
      12P LOSS CNV 12P LOSS WILD-TYPE 
                 4                123 
      12P LOSS CNV 12P LOSS WILD-TYPE 
                 1                 33 
$`12P LOSS CNV`
TCGA-BT-A2LA TCGA-CU-A3QU TCGA-FD-A3SR TCGA-GV-A3JW 
        5.88         5.19        19.79         6.41 

$`12P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LD 
       14.89         8.61         5.06         8.35         8.25         3.65 
TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS 
        4.64         8.98         1.94         2.01         0.46         0.43 
TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3YL 
        0.69        12.92         4.90         7.20         5.46         8.09 
TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB 
        2.53         2.14        31.40         8.98         7.04         8.91 
TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX 
      118.88       100.47         7.17         5.85         6.64         1.81 
TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL 
       10.59         7.76       123.85        75.32         2.20         3.98 
TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU 
        7.82         8.22        10.49        37.84         5.52        11.51 
TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 
        9.67         8.28        10.55       131.15        41.03        17.98 
TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 
       36.43         0.10         8.81         8.32         8.94         6.87 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ 
        4.01        11.05         8.94         7.96        32.02        24.30 
TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ 
       10.98         6.12         6.81         5.49         4.54        46.78 
TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZE TCGA-FJ-A3ZF 
        1.94         7.89         6.84        15.16         3.48         4.08 
TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
        3.22        49.91        26.50         5.65        26.93        32.78 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 
       17.26         7.04        20.12         0.82         2.86         2.24 
TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS 
        1.32         4.50         1.38         1.02         2.50         1.08 
TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q 
        7.69         2.10         3.12         5.82         6.38         7.56 
TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH 
        3.22         4.37         6.15         5.69         7.63         7.79 
TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ 
        4.11         6.64         6.38         5.33         1.51         6.71 
TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        8.71         3.42         4.64 

      12P LOSS CNV 12P LOSS WILD-TYPE 
              5.19               0.10 
      12P LOSS CNV 12P LOSS WILD-TYPE 
             19.79             131.15 
      12P LOSS CNV 12P LOSS WILD-TYPE 
             6.145              7.040 
[1] "5.2 - 19.8 (6.1)"  "0.1 - 131.2 (7.0)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"12P LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"12P LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"12P LOSS WILD-TYPE" 
[1] "hr=" "1"  
D59V2, continuous
D59V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS CNV          0    5
  12P LOSS WILD-TYPE   34   95
        clus
vv       12P LOSS CNV 12P LOSS WILD-TYPE
  FEMALE            0                 34
  MALE              5                 95
D59V4, continuous
[1] "Remove cluster labels:" "12P LOSS CNV"          
clus
      12P LOSS CNV 12P LOSS WILD-TYPE 
                 2                 36 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CF-A3MF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CF-A3MG         TCGA-CF-A3MH         TCGA-DK-A2HX 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IV         TCGA-DK-A3WX 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A3X2         TCGA-E5-A2PC         TCGA-G2-A2EF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-G2-A2EJ         TCGA-G2-A2EK         TCGA-G2-A2EL 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-G2-A2EO         TCGA-G2-A2ES         TCGA-G2-A3IB 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-G2-A3IE         TCGA-G2-A3VY         TCGA-GC-A3BM 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GC-A3I6         TCGA-GC-A3OO         TCGA-GC-A3RC 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3YS         TCGA-GD-A3OS 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GV-A3JV         TCGA-GV-A3JX         TCGA-GV-A3JZ 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GV-A3QF         TCGA-GV-A3QH         TCGA-GV-A3QI 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GV-A3QK         TCGA-GV-A40E         TCGA-GV-A40G 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
D59V5, continuous
                    vv
clus                 M0 M1 MX
  12P LOSS CNV        3  0  2
  12P LOSS WILD-TYPE 74  5 49
D59V6, multiclass
    clus
vv   12P LOSS CNV 12P LOSS WILD-TYPE
  M0            3                 74
  M1            0                  5
  MX            2                 49
                    vv
clus                 N0 N1 N2 N3 NX
  12P LOSS CNV        2  1  1  0  1
  12P LOSS WILD-TYPE 73 13 26  5  9
D59V7, multiclass
D59V8, continuous
D59V9, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  12P LOSS CNV             0        2         1        2
  12P LOSS WILD-TYPE       1       34        43       46
D59V10, multiclass
           clus
vv          12P LOSS CNV 12P LOSS WILD-TYPE
  STAGE I              0                  1
  STAGE II             2                 34
  STAGE III            1                 43
  STAGE IV             2                 46

Clustering(60) Variable = 12q loss
D60V1, survival
                    sevent
clus2                 0  1
  12Q LOSS CNV        4  1
  12Q LOSS WILD-TYPE 89 33
      12Q LOSS CNV 12Q LOSS WILD-TYPE 
                 5                122 
      12Q LOSS CNV 12Q LOSS WILD-TYPE 
                 1                 33 
$`12Q LOSS CNV`
TCGA-C4-A0F0 TCGA-CU-A3QU TCGA-FD-A3SO TCGA-FD-A3SS TCGA-GV-A3JW 
        1.94         5.19         5.49         1.94         6.41 

$`12Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
       14.89         8.61         5.06         8.35         8.25         5.88 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS 
        3.65         4.64         8.98         2.01         0.46         0.43 
TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3YL 
        0.69        12.92         4.90         7.20         5.46         8.09 
TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB 
        2.53         2.14        31.40         8.98         7.04         8.91 
TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX 
      118.88       100.47         7.17         5.85         6.64         1.81 
TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL 
       10.59         7.76       123.85        75.32         2.20         3.98 
TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU 
        7.82         8.22        10.49        37.84         5.52        11.51 
TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 
        9.67         8.28        10.55       131.15        41.03        17.98 
TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 
       36.43         0.10         8.81         8.32         8.94         6.87 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ 
        4.01        11.05         8.94         7.96        32.02        24.30 
TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR 
       10.98         6.12         6.81         4.54        46.78        19.79 
TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-FT-A3EE 
        7.89         6.84        15.16         3.48         4.08         3.22 
TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES 
       49.91        26.50         5.65        26.93        32.78        17.26 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO 
        7.04        20.12         0.82         2.86         2.24         1.32 
TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 
        4.50         1.38         1.02         2.50         1.08         7.69 
TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R 
        2.10         3.12         5.82         6.38         7.56         3.22 
TCGA-GV-A3JV TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI 
        4.37         6.15         5.69         7.63         7.79         4.11 
TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS 
        6.64         6.38         5.33         1.51         6.71         8.71 
TCGA-K4-A3WU TCGA-K4-A3WV 
        3.42         4.64 

      12Q LOSS CNV 12Q LOSS WILD-TYPE 
              1.94               0.10 
      12Q LOSS CNV 12Q LOSS WILD-TYPE 
              6.41             131.15 
      12Q LOSS CNV 12Q LOSS WILD-TYPE 
             5.190              7.185 
[1] "1.9 - 6.4 (5.2)"   "0.1 - 131.2 (7.2)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
      "12Q LOSS CNV" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
      "12Q LOSS CNV" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"       "12Q LOSS CNV" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
      "12Q LOSS CNV" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"       "12Q LOSS CNV" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"12Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
      "12Q LOSS CNV" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
      "12Q LOSS CNV" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"       "12Q LOSS CNV" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
      "12Q LOSS CNV" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"       "12Q LOSS CNV" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"12Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
      "12Q LOSS CNV" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
      "12Q LOSS CNV" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"       "12Q LOSS CNV" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
      "12Q LOSS CNV" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"       "12Q LOSS CNV" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"12Q LOSS WILD-TYPE" 
[1] "hr=" "4"  
D60V2, continuous
D60V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS CNV          0    6
  12Q LOSS WILD-TYPE   34   94
        clus
vv       12Q LOSS CNV 12Q LOSS WILD-TYPE
  FEMALE            0                 34
  MALE              6                 94
D60V4, continuous
[1] "Remove cluster labels:" "12Q LOSS CNV"          
clus
      12Q LOSS CNV 12Q LOSS WILD-TYPE 
                 2                 36 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CF-A3MF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CF-A3MG         TCGA-CF-A3MH         TCGA-DK-A2HX 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IV         TCGA-DK-A3WX 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A3X2         TCGA-E5-A2PC         TCGA-G2-A2EF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-G2-A2EJ         TCGA-G2-A2EK         TCGA-G2-A2EL 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-G2-A2EO         TCGA-G2-A2ES         TCGA-G2-A3IB 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-G2-A3IE         TCGA-G2-A3VY         TCGA-GC-A3BM 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GC-A3I6         TCGA-GC-A3OO         TCGA-GC-A3RC 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3YS         TCGA-GD-A3OS 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GV-A3JV         TCGA-GV-A3JX         TCGA-GV-A3JZ 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GV-A3QF         TCGA-GV-A3QH         TCGA-GV-A3QI 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GV-A3QK         TCGA-GV-A40E         TCGA-GV-A40G 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
D60V5, continuous
                    vv
clus                 M0 M1 MX
  12Q LOSS CNV        3  0  3
  12Q LOSS WILD-TYPE 74  5 48
D60V6, multiclass
    clus
vv   12Q LOSS CNV 12Q LOSS WILD-TYPE
  M0            3                 74
  M1            0                  5
  MX            3                 48
                    vv
clus                 N0 N1 N2 N3 NX
  12Q LOSS CNV        2  2  0  1  1
  12Q LOSS WILD-TYPE 73 12 27  4  9
D60V7, multiclass
D60V8, continuous
D60V9, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  12Q LOSS CNV             0        3         0        3
  12Q LOSS WILD-TYPE       1       33        44       45
D60V10, multiclass
           clus
vv          12Q LOSS CNV 12Q LOSS WILD-TYPE
  STAGE I              0                  1
  STAGE II             3                 33
  STAGE III            0                 44
  STAGE IV             3                 45

Clustering(61) Variable = 13q loss
D61V1, survival
                    sevent
clus2                 0  1
  13Q LOSS CNV       12  4
  13Q LOSS WILD-TYPE 81 30
      13Q LOSS CNV 13Q LOSS WILD-TYPE 
                16                111 
      13Q LOSS CNV 13Q LOSS WILD-TYPE 
                 4                 30 
$`13Q LOSS CNV`
TCGA-BT-A20N TCGA-BT-A20V TCGA-BT-A20X TCGA-BT-A2LA TCGA-C4-A0F0 TCGA-DK-A1A3 
       26.10         5.06         8.25         5.88         1.94         2.53 
TCGA-DK-A1A5 TCGA-DK-A1AC TCGA-DK-A2I6 TCGA-FD-A3SN TCGA-G2-A2ES TCGA-GC-A3BM 
        2.14       118.88        75.32         6.81        17.26         2.86 
TCGA-GU-A42Q TCGA-GV-A3JW TCGA-GV-A3QI TCGA-K4-A3WV 
        7.56         6.41         4.11         4.64 

$`13Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T 
       19.00        12.16        17.85        19.46         5.06        14.89 
TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F6 
        8.61         8.35         3.65         4.64         8.98         2.01 
TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR 
        0.46         0.43         0.69        12.92         4.90         7.20 
TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA 
        5.46         5.19         8.09        31.40         8.98         7.04 
TCGA-DK-A1AB TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX 
        8.91       100.47         7.17         5.85         6.64         1.81 
TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM 
       10.59         7.76       123.85         2.20         3.98         7.82 
TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV 
        8.22        10.49        37.84         5.52        11.51         9.67 
TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-E5-A2PC 
        8.28        10.55       131.15        41.03        17.98        36.43 
TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 
        0.10         8.81         8.32         8.94         6.87         4.01 
TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL 
       11.05         8.94         7.96        32.02        24.30        10.98 
TCGA-FD-A3SM TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS 
        6.12         5.49         4.54        46.78        19.79         1.94 
TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-FT-A3EE 
        7.89         6.84        15.16         3.48         4.08         3.22 
TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A3IB 
       49.91        26.50         5.65        26.93        32.78         7.04 
TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC 
       20.12         0.82         2.24         1.32         4.50         1.38 
TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ 
        1.02         2.50         1.08         7.69         2.10         3.12 
TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JX TCGA-GV-A3JZ 
        5.82         6.38         3.22         4.37         6.15         5.69 
TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO 
        7.63         7.79         6.64         6.38         5.33         1.51 
TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU 
        6.71         8.71         3.42 

      13Q LOSS CNV 13Q LOSS WILD-TYPE 
              1.94               0.10 
      13Q LOSS CNV 13Q LOSS WILD-TYPE 
            118.88             131.15 
      13Q LOSS CNV 13Q LOSS WILD-TYPE 
             6.145              7.170 
[1] "1.9 - 118.9 (6.1)" "0.1 - 131.2 (7.2)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
      "13Q LOSS CNV" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
      "13Q LOSS CNV" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
      "13Q LOSS CNV" 
[1] "hr=" "1.1"
D61V2, continuous
D61V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS CNV          2   16
  13Q LOSS WILD-TYPE   32   84
        clus
vv       13Q LOSS CNV 13Q LOSS WILD-TYPE
  FEMALE            2                 32
  MALE             16                 84
D61V4, continuous
D61V5, continuous
                    vv
clus                 M0 M1 MX
  13Q LOSS CNV       12  0  6
  13Q LOSS WILD-TYPE 65  5 45
D61V6, multiclass
    clus
vv   13Q LOSS CNV 13Q LOSS WILD-TYPE
  M0           12                 65
  M1            0                  5
  MX            6                 45
                    vv
clus                 N0 N1 N2 N3 NX
  13Q LOSS CNV       11  1  4  0  2
  13Q LOSS WILD-TYPE 64 13 23  5  8
D61V7, multiclass
D61V8, continuous
D61V9, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  13Q LOSS CNV             0        7         5        5
  13Q LOSS WILD-TYPE       1       29        39       43
D61V10, multiclass
           clus
vv          13Q LOSS CNV 13Q LOSS WILD-TYPE
  STAGE I              0                  1
  STAGE II             7                 29
  STAGE III            5                 39
  STAGE IV             5                 43

Clustering(62) Variable = 14q loss
D62V1, survival
                    sevent
clus2                 0  1
  14Q LOSS CNV       18  4
  14Q LOSS WILD-TYPE 75 30
      14Q LOSS CNV 14Q LOSS WILD-TYPE 
                22                105 
      14Q LOSS CNV 14Q LOSS WILD-TYPE 
                 4                 30 
$`14Q LOSS CNV`
TCGA-BT-A20J TCGA-BT-A20T TCGA-BT-A20V TCGA-CF-A1HS TCGA-CU-A0YR TCGA-DK-A1A3 
       19.00        14.89         5.06         0.43         7.20         2.53 
TCGA-DK-A1A5 TCGA-DK-A1AD TCGA-DK-A2I1 TCGA-DK-A2I6 TCGA-DK-A3IS TCGA-DK-A3X1 
        2.14       100.47        10.59        75.32        37.84        41.03 
TCGA-FD-A3SN TCGA-FD-A43N TCGA-FJ-A3Z7 TCGA-FJ-A3ZF TCGA-G2-A2EF TCGA-G2-A3VY 
        6.81         7.89        15.16         4.08        49.91         0.82 
TCGA-GC-A3RB TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A40G 
        4.50         5.69         7.63         5.33 

$`14Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20U 
       26.10        12.16        17.85        19.46         5.06         8.61 
TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ 
        8.35         8.25         5.88         3.65         4.64         8.98 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO 
        1.94         2.01         0.46         0.69        12.92         4.90 
TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA 
        5.46         5.19         8.09        31.40         8.98         7.04 
TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX 
        8.91       118.88         7.17         5.85         6.64         1.81 
TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN 
        7.76       123.85         2.20         3.98         7.82         8.22 
TCGA-DK-A3IQ TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX 
       10.49         5.52        11.51         9.67         8.28        10.55 
TCGA-DK-A3WY TCGA-DK-A3X2 TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 
      131.15        17.98        36.43         0.10         8.81         8.32 
TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 
        8.94         6.87         4.01        11.05         8.94         7.96 
TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SO TCGA-FD-A3SP 
       32.02        24.30        10.98         6.12         5.49         4.54 
TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43U TCGA-FJ-A3ZE TCGA-FT-A3EE 
       46.78        19.79         1.94         6.84         3.48         3.22 
TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB 
       26.50         5.65        26.93        32.78        17.26         7.04 
TCGA-G2-A3IE TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RC TCGA-GC-A3RD 
       20.12         2.86         2.24         1.32         1.38         1.02 
TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS 
        2.50         1.08         7.69         2.10         3.12         5.82 
TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX 
        6.38         7.56         3.22         4.37         6.41         6.15 
TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-H4-A2HO TCGA-H4-A2HQ 
        7.79         4.11         6.64         6.38         1.51         6.71 
TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        8.71         3.42         4.64 

      14Q LOSS CNV 14Q LOSS WILD-TYPE 
              0.43               0.10 
      14Q LOSS CNV 14Q LOSS WILD-TYPE 
            100.47             131.15 
      14Q LOSS CNV 14Q LOSS WILD-TYPE 
             7.415              6.870 
[1] "0.4 - 100.5 (7.4)" "0.1 - 131.2 (6.9)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV"       "14Q LOSS CNV" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"14Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV"       "14Q LOSS CNV" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"14Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV"       "14Q LOSS CNV" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"14Q LOSS WILD-TYPE" 
[1] "hr=" "2.3"
D62V2, continuous
D62V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS CNV          4   19
  14Q LOSS WILD-TYPE   30   81
        clus
vv       14Q LOSS CNV 14Q LOSS WILD-TYPE
  FEMALE            4                 30
  MALE             19                 81
D62V4, continuous
D62V5, continuous
                    vv
clus                 M0 M1 MX
  14Q LOSS CNV       15  0  7
  14Q LOSS WILD-TYPE 62  5 44
D62V6, multiclass
    clus
vv   14Q LOSS CNV 14Q LOSS WILD-TYPE
  M0           15                 62
  M1            0                  5
  MX            7                 44
                    vv
clus                 N0 N1 N2 N3 NX
  14Q LOSS CNV       13  2  6  1  0
  14Q LOSS WILD-TYPE 62 12 21  4 10
D62V7, multiclass
D62V8, continuous
D62V9, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  14Q LOSS CNV             0        8         4       10
  14Q LOSS WILD-TYPE       1       28        40       38
D62V10, multiclass
           clus
vv          14Q LOSS CNV 14Q LOSS WILD-TYPE
  STAGE I              0                  1
  STAGE II             8                 28
  STAGE III            4                 40
  STAGE IV            10                 38

Clustering(63) Variable = 15q loss
D63V1, survival
                    sevent
clus2                 0  1
  15Q LOSS CNV       11  4
  15Q LOSS WILD-TYPE 82 30
      15Q LOSS CNV 15Q LOSS WILD-TYPE 
                15                112 
      15Q LOSS CNV 15Q LOSS WILD-TYPE 
                 4                 30 
$`15Q LOSS CNV`
TCGA-BT-A20X TCGA-C4-A0EZ TCGA-CF-A1HS TCGA-CU-A3KJ TCGA-DK-A1A7 TCGA-DK-A3IM 
        8.25         8.98         0.43         5.46         8.98         7.82 
TCGA-DK-A3IN TCGA-E5-A2PC TCGA-FD-A3NA TCGA-FD-A3SN TCGA-G2-A2EF TCGA-G2-A2EL 
        8.22        36.43        32.02         6.81        49.91        26.93 
TCGA-GV-A3JX TCGA-GV-A3QF TCGA-H4-A2HQ 
        6.15         7.63         6.71 

$`15Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A2LA TCGA-BT-A2LD 
       14.89         8.61         5.06         8.35         5.88         3.65 
TCGA-BT-A3PH TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A27C TCGA-CU-A0YN 
        4.64         1.94         2.01         0.46         0.69        12.92 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 
        4.90         7.20         5.19         8.09         2.53         2.14 
TCGA-DK-A1A6 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE 
       31.40         7.04         8.91       118.88       100.47         7.17 
TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 
        5.85         6.64         1.81        10.59         7.76       123.85 
TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT 
       75.32         2.20         3.98        10.49        37.84         5.52 
TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 
       11.51         9.67         8.28        10.55       131.15        41.03 
TCGA-DK-A3X2 TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 
       17.98         0.10         8.81         8.32         8.94         6.87 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3SJ TCGA-FD-A3SL 
        4.01        11.05         8.94         7.96        24.30        10.98 
TCGA-FD-A3SM TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS 
        6.12         5.49         4.54        46.78        19.79         1.94 
TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-FT-A3EE 
        7.89         6.84        15.16         3.48         4.08         3.22 
TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE 
       26.50         5.65        32.78        17.26         7.04        20.12 
TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC 
        0.82         2.86         2.24         1.32         4.50         1.38 
TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ 
        1.02         2.50         1.08         7.69         2.10         3.12 
TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW 
        5.82         6.38         7.56         3.22         4.37         6.41 
TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G 
        5.69         7.79         4.11         6.64         6.38         5.33 
TCGA-H4-A2HO TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        1.51         8.71         3.42         4.64 

      15Q LOSS CNV 15Q LOSS WILD-TYPE 
              0.43               0.10 
      15Q LOSS CNV 15Q LOSS WILD-TYPE 
             49.91             131.15 
      15Q LOSS CNV 15Q LOSS WILD-TYPE 
              8.22               6.79 
[1] "0.4 - 49.9 (8.2)"  "0.1 - 131.2 (6.8)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"15Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"15Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"15Q LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D63V2, continuous
D63V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS CNV          5   10
  15Q LOSS WILD-TYPE   29   90
        clus
vv       15Q LOSS CNV 15Q LOSS WILD-TYPE
  FEMALE            5                 29
  MALE             10                 90
D63V4, continuous
D63V5, continuous
                    vv
clus                 M0 M1 MX
  15Q LOSS CNV        8  2  5
  15Q LOSS WILD-TYPE 69  3 46
D63V6, multiclass
    clus
vv   15Q LOSS CNV 15Q LOSS WILD-TYPE
  M0            8                 69
  M1            2                  3
  MX            5                 46
                    vv
clus                 N0 N1 N2 N3 NX
  15Q LOSS CNV        9  2  3  0  1
  15Q LOSS WILD-TYPE 66 12 24  5  9
D63V7, multiclass
D63V8, continuous
D63V9, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  15Q LOSS CNV             0        3         4        7
  15Q LOSS WILD-TYPE       1       33        40       41
D63V10, multiclass
           clus
vv          15Q LOSS CNV 15Q LOSS WILD-TYPE
  STAGE I              0                  1
  STAGE II             3                 33
  STAGE III            4                 40
  STAGE IV             7                 41

Clustering(64) Variable = 16p loss
D64V1, survival
                    sevent
clus2                 0  1
  16P LOSS CNV       11  3
  16P LOSS WILD-TYPE 82 31
      16P LOSS CNV 16P LOSS WILD-TYPE 
                14                113 
      16P LOSS CNV 16P LOSS WILD-TYPE 
                 3                 31 
$`16P LOSS CNV`
TCGA-CU-A0YN TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-DK-A1A3 TCGA-DK-A1AC TCGA-DK-A2HX 
       12.92         5.46         5.19         2.53       118.88         1.81 
TCGA-DK-A3X2 TCGA-FD-A3SO TCGA-G2-A2EF TCGA-GC-A3RC TCGA-GU-A42P TCGA-GV-A3JX 
       17.98         5.49        49.91         1.38         6.38         6.15 
TCGA-GV-A3JZ TCGA-GV-A3QH 
        5.69         7.79 

$`16P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
       14.89         8.61         5.06         8.35         8.25         5.88 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR 
        3.65         4.64         8.98         1.94         2.01         0.46 
TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3YL TCGA-DK-A1A5 
        0.43         0.69         4.90         7.20         8.09         2.14 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AD TCGA-DK-A1AE 
       31.40         8.98         7.04         8.91       100.47         7.17 
TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 
        5.85         6.64        10.59         7.76       123.85        75.32 
TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS 
        2.20         3.98         7.82         8.22        10.49        37.84 
TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY 
        5.52        11.51         9.67         8.28        10.55       131.15 
TCGA-DK-A3X1 TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 
       41.03        36.43         0.10         8.81         8.32         8.94 
TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA 
        6.87         4.01        11.05         8.94         7.96        32.02 
TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SP TCGA-FD-A3SQ 
       24.30        10.98         6.12         6.81         4.54        46.78 
TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZE 
       19.79         1.94         7.89         6.84        15.16         3.48 
TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
        4.08         3.22        26.50         5.65        26.93        32.78 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 
       17.26         7.04        20.12         0.82         2.86         2.24 
TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 
        1.32         4.50         1.02         2.50         1.08         7.69 
TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV 
        2.10         3.12         5.82         7.56         3.22         4.37 
TCGA-GV-A3JW TCGA-GV-A3QF TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G 
        6.41         7.63         4.11         6.64         6.38         5.33 
TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        1.51         6.71         8.71         3.42         4.64 

      16P LOSS CNV 16P LOSS WILD-TYPE 
              1.38               0.10 
      16P LOSS CNV 16P LOSS WILD-TYPE 
            118.88             131.15 
      16P LOSS CNV 16P LOSS WILD-TYPE 
              5.92               7.17 
[1] "1.4 - 118.9 (5.9)" "0.1 - 131.2 (7.2)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
      "16P LOSS CNV" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
      "16P LOSS CNV"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
      "16P LOSS CNV" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"16P LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
      "16P LOSS CNV" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
      "16P LOSS CNV"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
      "16P LOSS CNV" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"16P LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
      "16P LOSS CNV" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
      "16P LOSS CNV"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
      "16P LOSS CNV" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"16P LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D64V2, continuous
D64V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS CNV          1   14
  16P LOSS WILD-TYPE   33   86
        clus
vv       16P LOSS CNV 16P LOSS WILD-TYPE
  FEMALE            1                 33
  MALE             14                 86
D64V4, continuous
D64V5, continuous
                    vv
clus                 M0 M1 MX
  16P LOSS CNV       10  0  5
  16P LOSS WILD-TYPE 67  5 46
D64V6, multiclass
    clus
vv   16P LOSS CNV 16P LOSS WILD-TYPE
  M0           10                 67
  M1            0                  5
  MX            5                 46
                    vv
clus                 N0 N1 N2 N3 NX
  16P LOSS CNV        6  3  4  1  1
  16P LOSS WILD-TYPE 69 11 23  4  9
D64V7, multiclass
D64V8, continuous
D64V9, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  16P LOSS CNV             0        3         4        7
  16P LOSS WILD-TYPE       1       33        40       41
D64V10, multiclass
           clus
vv          16P LOSS CNV 16P LOSS WILD-TYPE
  STAGE I              0                  1
  STAGE II             3                 33
  STAGE III            4                 40
  STAGE IV             7                 41

Clustering(65) Variable = 16q loss
D65V1, survival
                    sevent
clus2                 0  1
  16Q LOSS CNV       11  4
  16Q LOSS WILD-TYPE 82 30
      16Q LOSS CNV 16Q LOSS WILD-TYPE 
                15                112 
      16Q LOSS CNV 16Q LOSS WILD-TYPE 
                 4                 30 
$`16Q LOSS CNV`
TCGA-CU-A0YN TCGA-CU-A3QU TCGA-DK-A1A3 TCGA-DK-A1AC TCGA-DK-A2HX TCGA-DK-A3IV 
       12.92         5.19         2.53       118.88         1.81         9.67 
TCGA-DK-A3X2 TCGA-FD-A3SO TCGA-FD-A3SS TCGA-GC-A3RC TCGA-GU-A42P TCGA-GV-A3JX 
       17.98         5.49         1.94         1.38         6.38         6.15 
TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-K4-A3WV 
        5.69         7.79         4.64 

$`16Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
       14.89         8.61         5.06         8.35         8.25         5.88 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR 
        3.65         4.64         8.98         1.94         2.01         0.46 
TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3YL 
        0.43         0.69         4.90         7.20         5.46         8.09 
TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AD 
        2.14        31.40         8.98         7.04         8.91       100.47 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 
        7.17         5.85         6.64        10.59         7.76       123.85 
TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ 
       75.32         2.20         3.98         7.82         8.22        10.49 
TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY 
       37.84         5.52        11.51         8.28        10.55       131.15 
TCGA-DK-A3X1 TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 
       41.03        36.43         0.10         8.81         8.32         8.94 
TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA 
        6.87         4.01        11.05         8.94         7.96        32.02 
TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SP TCGA-FD-A3SQ 
       24.30        10.98         6.12         6.81         4.54        46.78 
TCGA-FD-A3SR TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZE TCGA-FJ-A3ZF 
       19.79         7.89         6.84        15.16         3.48         4.08 
TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
        3.22        49.91        26.50         5.65        26.93        32.78 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 
       17.26         7.04        20.12         0.82         2.86         2.24 
TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 
        1.32         4.50         1.02         2.50         1.08         7.69 
TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV 
        2.10         3.12         5.82         7.56         3.22         4.37 
TCGA-GV-A3JW TCGA-GV-A3QF TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G 
        6.41         7.63         4.11         6.64         6.38         5.33 
TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU 
        1.51         6.71         8.71         3.42 

      16Q LOSS CNV 16Q LOSS WILD-TYPE 
              1.38               0.10 
      16Q LOSS CNV 16Q LOSS WILD-TYPE 
            118.88             131.15 
      16Q LOSS CNV 16Q LOSS WILD-TYPE 
             5.690              7.185 
[1] "1.4 - 118.9 (5.7)" "0.1 - 131.2 (7.2)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
      "16Q LOSS CNV" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
      "16Q LOSS CNV" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
      "16Q LOSS CNV" 
[1] "hr=" "1.4"
D65V2, continuous
D65V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS CNV          2   14
  16Q LOSS WILD-TYPE   32   86
        clus
vv       16Q LOSS CNV 16Q LOSS WILD-TYPE
  FEMALE            2                 32
  MALE             14                 86
D65V4, continuous
D65V5, continuous
                    vv
clus                 M0 M1 MX
  16Q LOSS CNV        9  0  7
  16Q LOSS WILD-TYPE 68  5 44
D65V6, multiclass
    clus
vv   16Q LOSS CNV 16Q LOSS WILD-TYPE
  M0            9                 68
  M1            0                  5
  MX            7                 44
                    vv
clus                 N0 N1 N2 N3 NX
  16Q LOSS CNV        5  3  4  2  2
  16Q LOSS WILD-TYPE 70 11 23  3  8
D65V7, multiclass
D65V8, continuous
D65V9, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  16Q LOSS CNV             0        4         3        8
  16Q LOSS WILD-TYPE       1       32        41       40
D65V10, multiclass
           clus
vv          16Q LOSS CNV 16Q LOSS WILD-TYPE
  STAGE I              0                  1
  STAGE II             4                 32
  STAGE III            3                 41
  STAGE IV             8                 40

Clustering(66) Variable = 17p loss
D66V1, survival
                    sevent
clus2                 0  1
  17P LOSS CNV       26 10
  17P LOSS WILD-TYPE 67 24
      17P LOSS CNV 17P LOSS WILD-TYPE 
                36                 91 
      17P LOSS CNV 17P LOSS WILD-TYPE 
                10                 24 
$`17P LOSS CNV`
TCGA-BT-A20N TCGA-BT-A20P TCGA-BT-A20T TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A3PH 
       26.10        17.85        14.89         8.25         5.88         4.64 
TCGA-C4-A0F0 TCGA-CF-A1HR TCGA-CF-A27C TCGA-CU-A3KJ TCGA-DK-A1AB TCGA-DK-A2HX 
        1.94         0.46         0.69         5.46         8.91         1.81 
TCGA-DK-A3IL TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IV TCGA-E5-A2PC 
        3.98        10.49        37.84         5.52         9.67        36.43 
TCGA-FD-A3B4 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FJ-A3ZE 
        8.32        32.02        24.30         6.81         5.49         3.48 
TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A3IE TCGA-GC-A3BM 
       49.91        26.50        26.93        32.78        20.12         2.86 
TCGA-GC-A3RD TCGA-GD-A3OP TCGA-GU-A42Q TCGA-GV-A3JW TCGA-GV-A3QF TCGA-H4-A2HQ 
        1.02         2.10         7.56         6.41         7.63         6.71 

$`17P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20O TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20U TCGA-BT-A20V 
       19.00        12.16        19.46         5.06         8.61         5.06 
TCGA-BT-A20W TCGA-BT-A2LD TCGA-C4-A0EZ TCGA-C4-A0F6 TCGA-CF-A1HS TCGA-CU-A0YN 
        8.35         3.65         8.98         2.01         0.43        12.92 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 
        4.90         7.20         5.19         8.09         2.53         2.14 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE 
       31.40         8.98         7.04       118.88       100.47         7.17 
TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 
        5.85         6.64        10.59         7.76       123.85        75.32 
TCGA-DK-A3IK TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IU TCGA-DK-A3WW TCGA-DK-A3WX 
        2.20         7.82         8.22        11.51         8.28        10.55 
TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B5 
      131.15        41.03        17.98         0.10         8.81         8.94 
TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3SL 
        6.87         4.01        11.05         8.94         7.96        10.98 
TCGA-FD-A3SM TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N 
        6.12         4.54        46.78        19.79         1.94         7.89 
TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-G2-A2EK TCGA-G2-A2ES 
        6.84        15.16         4.08         3.22         5.65        17.26 
TCGA-G2-A3IB TCGA-G2-A3VY TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC 
        7.04         0.82         2.24         1.32         4.50         1.38 
TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P 
        2.50         1.08         7.69         3.12         5.82         6.38 
TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-GV-A3QI 
        3.22         4.37         6.15         5.69         7.79         4.11 
TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-K4-A3WS TCGA-K4-A3WU 
        6.64         6.38         5.33         1.51         8.71         3.42 
TCGA-K4-A3WV 
        4.64 

      17P LOSS CNV 17P LOSS WILD-TYPE 
              0.46               0.10 
      17P LOSS CNV 17P LOSS WILD-TYPE 
             49.91             131.15 
      17P LOSS CNV 17P LOSS WILD-TYPE 
             7.595              6.870 
[1] "0.5 - 49.9 (7.6)"  "0.1 - 131.2 (6.9)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
      "17P LOSS CNV" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
      "17P LOSS CNV" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
      "17P LOSS CNV"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"17P LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
      "17P LOSS CNV" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
      "17P LOSS CNV" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
      "17P LOSS CNV"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"17P LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
      "17P LOSS CNV" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
      "17P LOSS CNV" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
      "17P LOSS CNV"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"17P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D66V2, continuous
D66V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS CNV         10   28
  17P LOSS WILD-TYPE   24   72
        clus
vv       17P LOSS CNV 17P LOSS WILD-TYPE
  FEMALE           10                 24
  MALE             28                 72
D66V4, continuous
D66V5, continuous
                    vv
clus                 M0 M1 MX
  17P LOSS CNV       24  2 12
  17P LOSS WILD-TYPE 53  3 39
D66V6, multiclass
    clus
vv   17P LOSS CNV 17P LOSS WILD-TYPE
  M0           24                 53
  M1            2                  3
  MX           12                 39
                    vv
clus                 N0 N1 N2 N3 NX
  17P LOSS CNV       22  3  7  1  4
  17P LOSS WILD-TYPE 53 11 20  4  6
D66V7, multiclass
D66V8, continuous
D66V9, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  17P LOSS CNV             0       12        10       14
  17P LOSS WILD-TYPE       1       24        34       34
D66V10, multiclass
           clus
vv          17P LOSS CNV 17P LOSS WILD-TYPE
  STAGE I              0                  1
  STAGE II            12                 24
  STAGE III           10                 34
  STAGE IV            14                 34

Clustering(67) Variable = 17q loss
D67V1, survival
                    sevent
clus2                 0  1
  17Q LOSS CNV        4  1
  17Q LOSS WILD-TYPE 89 33
      17Q LOSS CNV 17Q LOSS WILD-TYPE 
                 5                122 
      17Q LOSS CNV 17Q LOSS WILD-TYPE 
                 1                 33 
$`17Q LOSS CNV`
TCGA-BT-A2LA TCGA-DK-A1AB TCGA-FJ-A3ZE TCGA-G2-A3IE TCGA-GV-A3JW 
        5.88         8.91         3.48        20.12         6.41 

$`17Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LD 
       14.89         8.61         5.06         8.35         8.25         3.65 
TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS 
        4.64         8.98         1.94         2.01         0.46         0.43 
TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU 
        0.69        12.92         4.90         7.20         5.46         5.19 
TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA 
        8.09         2.53         2.14        31.40         8.98         7.04 
TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX 
      118.88       100.47         7.17         5.85         6.64         1.81 
TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL 
       10.59         7.76       123.85        75.32         2.20         3.98 
TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU 
        7.82         8.22        10.49        37.84         5.52        11.51 
TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 
        9.67         8.28        10.55       131.15        41.03        17.98 
TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 
       36.43         0.10         8.81         8.32         8.94         6.87 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ 
        4.01        11.05         8.94         7.96        32.02        24.30 
TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ 
       10.98         6.12         6.81         5.49         4.54        46.78 
TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZF 
       19.79         1.94         7.89         6.84        15.16         4.08 
TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
        3.22        49.91        26.50         5.65        26.93        32.78 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO 
       17.26         7.04         0.82         2.86         2.24         1.32 
TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 
        4.50         1.38         1.02         2.50         1.08         7.69 
TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R 
        2.10         3.12         5.82         6.38         7.56         3.22 
TCGA-GV-A3JV TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI 
        4.37         6.15         5.69         7.63         7.79         4.11 
TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS 
        6.64         6.38         5.33         1.51         6.71         8.71 
TCGA-K4-A3WU TCGA-K4-A3WV 
        3.42         4.64 

      17Q LOSS CNV 17Q LOSS WILD-TYPE 
              3.48               0.10 
      17Q LOSS CNV 17Q LOSS WILD-TYPE 
             20.12             131.15 
      17Q LOSS CNV 17Q LOSS WILD-TYPE 
              6.41               7.04 
[1] "3.5 - 20.1 (6.4)"  "0.1 - 131.2 (7.0)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"17Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"17Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"17Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D67V2, continuous
D67V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS CNV          1    5
  17Q LOSS WILD-TYPE   33   95
        clus
vv       17Q LOSS CNV 17Q LOSS WILD-TYPE
  FEMALE            1                 33
  MALE              5                 95
D67V4, continuous
D67V5, continuous
                    vv
clus                 M0 M1 MX
  17Q LOSS CNV        3  1  2
  17Q LOSS WILD-TYPE 74  4 49
D67V6, multiclass
    clus
vv   17Q LOSS CNV 17Q LOSS WILD-TYPE
  M0            3                 74
  M1            1                  4
  MX            2                 49
                    vv
clus                 N0 N1 N2 N3 NX
  17Q LOSS CNV        2  0  0  1  2
  17Q LOSS WILD-TYPE 73 14 27  4  8
D67V7, multiclass
D67V8, continuous
[1] "Remove cluster labels:" "17Q LOSS CNV"          
clus
      17Q LOSS CNV 17Q LOSS WILD-TYPE 
                 2                 98 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20T 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-CU-A0YN 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AC         TCGA-DK-A1AD 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A1AE         TCGA-DK-A1AF         TCGA-DK-A1AG 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A2HX         TCGA-DK-A2I1         TCGA-DK-A2I2 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A2I4         TCGA-DK-A2I6         TCGA-DK-A3IK 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A3IL         TCGA-DK-A3IM         TCGA-DK-A3IN 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A3IU         TCGA-DK-A3WW         TCGA-DK-A3WX 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A3WY         TCGA-DK-A3X1         TCGA-DK-A3X2 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-FD-A3B3         TCGA-FD-A3B4 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FT-A3EE         TCGA-GC-A3BM 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GC-A3I6         TCGA-GC-A3OO         TCGA-GC-A3RB 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GC-A3RC         TCGA-GC-A3RD         TCGA-GC-A3WC 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GC-A3YS         TCGA-GD-A2C5         TCGA-GD-A3OP 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GD-A3OQ         TCGA-GU-A42P         TCGA-GU-A42Q 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GV-A3JV         TCGA-GV-A3JX         TCGA-GV-A3JZ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GV-A3QF         TCGA-GV-A3QG         TCGA-GV-A3QI 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GV-A3QK         TCGA-GV-A40G         TCGA-H4-A2HO 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-K4-A3WS         TCGA-K4-A3WV 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
D67V9, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  17Q LOSS CNV             0        3         1        2
  17Q LOSS WILD-TYPE       1       33        43       46
D67V10, multiclass
           clus
vv          17Q LOSS CNV 17Q LOSS WILD-TYPE
  STAGE I              0                  1
  STAGE II             3                 33
  STAGE III            1                 43
  STAGE IV             2                 46

Clustering(68) Variable = 18p loss
D68V1, survival
                    sevent
clus2                 0  1
  18P LOSS CNV       12  4
  18P LOSS WILD-TYPE 81 30
      18P LOSS CNV 18P LOSS WILD-TYPE 
                16                111 
      18P LOSS CNV 18P LOSS WILD-TYPE 
                 4                 30 
$`18P LOSS CNV`
TCGA-BT-A20J TCGA-BT-A20N TCGA-DK-A1A3 TCGA-DK-A1A7 TCGA-DK-A1AB TCGA-DK-A2I1 
       19.00        26.10         2.53         8.98         8.91        10.59 
TCGA-DK-A3IL TCGA-DK-A3IQ TCGA-DK-A3IT TCGA-DK-A3X2 TCGA-E5-A2PC TCGA-FD-A3SN 
        3.98        10.49         5.52        17.98        36.43         6.81 
TCGA-FD-A3SQ TCGA-GC-A3BM TCGA-GC-A3RD TCGA-GV-A3JW 
       46.78         2.86         1.02         6.41 

$`18P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U 
       12.16        17.85        19.46         5.06        14.89         8.61 
TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH 
        5.06         8.35         8.25         5.88         3.65         4.64 
TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C 
        8.98         1.94         2.01         0.46         0.43         0.69 
TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL 
       12.92         4.90         7.20         5.46         5.19         8.09 
TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1AA TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE 
        2.14        31.40         7.04       118.88       100.47         7.17 
TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 
        5.85         6.64         1.81         7.76       123.85        75.32 
TCGA-DK-A3IK TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IS TCGA-DK-A3IU TCGA-DK-A3IV 
        2.20         7.82         8.22        37.84        11.51         9.67 
TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-E7-A3Y1 TCGA-FD-A3B3 
        8.28        10.55       131.15        41.03         0.10         8.81 
TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 
        8.32         8.94         6.87         4.01        11.05         8.94 
TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SO 
        7.96        32.02        24.30        10.98         6.12         5.49 
TCGA-FD-A3SP TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 
        4.54        19.79         1.94         7.89         6.84        15.16 
TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK 
        3.48         4.08         3.22        49.91        26.50         5.65 
TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY 
       26.93        32.78        17.26         7.04        20.12         0.82 
TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3WC TCGA-GC-A3YS 
        2.24         1.32         4.50         1.38         2.50         1.08 
TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q 
        7.69         2.10         3.12         5.82         6.38         7.56 
TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH 
        3.22         4.37         6.15         5.69         7.63         7.79 
TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ 
        4.11         6.64         6.38         5.33         1.51         6.71 
TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        8.71         3.42         4.64 

      18P LOSS CNV 18P LOSS WILD-TYPE 
              1.02               0.10 
      18P LOSS CNV 18P LOSS WILD-TYPE 
             46.78             131.15 
      18P LOSS CNV 18P LOSS WILD-TYPE 
             8.945              6.870 
[1] "1.0 - 46.8 (8.9)"  "0.1 - 131.2 (6.9)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
      "18P LOSS CNV"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"18P LOSS WILD-TYPE"       "18P LOSS CNV"       "18P LOSS CNV" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"18P LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
      "18P LOSS CNV"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"18P LOSS WILD-TYPE"       "18P LOSS CNV"       "18P LOSS CNV" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"18P LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
      "18P LOSS CNV"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"18P LOSS WILD-TYPE"       "18P LOSS CNV"       "18P LOSS CNV" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"18P LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D68V2, continuous
D68V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS CNV          6   13
  18P LOSS WILD-TYPE   28   87
        clus
vv       18P LOSS CNV 18P LOSS WILD-TYPE
  FEMALE            6                 28
  MALE             13                 87
D68V4, continuous
D68V5, continuous
                    vv
clus                 M0 M1 MX
  18P LOSS CNV       13  0  6
  18P LOSS WILD-TYPE 64  5 45
D68V6, multiclass
    clus
vv   18P LOSS CNV 18P LOSS WILD-TYPE
  M0           13                 64
  M1            0                  5
  MX            6                 45
                    vv
clus                 N0 N1 N2 N3 NX
  18P LOSS CNV       10  1  5  0  2
  18P LOSS WILD-TYPE 65 13 22  5  8
D68V7, multiclass
D68V8, continuous
D68V9, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  18P LOSS CNV             0        7         4        8
  18P LOSS WILD-TYPE       1       29        40       40
D68V10, multiclass
           clus
vv          18P LOSS CNV 18P LOSS WILD-TYPE
  STAGE I              0                  1
  STAGE II             7                 29
  STAGE III            4                 40
  STAGE IV             8                 40

Clustering(69) Variable = 18q loss
D69V1, survival
                    sevent
clus2                 0  1
  18Q LOSS CNV       28  5
  18Q LOSS WILD-TYPE 65 29
      18Q LOSS CNV 18Q LOSS WILD-TYPE 
                33                 94 
      18Q LOSS CNV 18Q LOSS WILD-TYPE 
                 5                 29 
$`18Q LOSS CNV`
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20W TCGA-CF-A1HS TCGA-CU-A0YR TCGA-DK-A1A7 
       19.00        26.10         8.35         0.43         7.20         8.98 
TCGA-DK-A1AB TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL 
        8.91         1.81        10.59        75.32         2.20         3.98 
TCGA-DK-A3IQ TCGA-DK-A3X1 TCGA-E5-A2PC TCGA-FD-A3B4 TCGA-FD-A3NA TCGA-FD-A3SN 
       10.49        41.03        36.43         8.32        32.02         6.81 
TCGA-FD-A3SO TCGA-FD-A3SQ TCGA-FD-A3SS TCGA-FD-A43N TCGA-FJ-A3ZF TCGA-G2-A2EF 
        5.49        46.78         1.94         7.89         4.08        49.91 
TCGA-GC-A3BM TCGA-GC-A3RD TCGA-GC-A3YS TCGA-GD-A3OS TCGA-GV-A3JW TCGA-GV-A3JX 
        2.86         1.02         1.08         5.82         6.41         6.15 
TCGA-GV-A40G TCGA-H4-A2HQ TCGA-K4-A3WV 
        5.33         6.71         4.64 

$`18Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U 
       12.16        17.85        19.46         5.06        14.89         8.61 
TCGA-BT-A20V TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ 
        5.06         8.25         5.88         3.65         4.64         8.98 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO 
        1.94         2.01         0.46         0.69        12.92         4.90 
TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 
        5.46         5.19         8.09         2.53         2.14        31.40 
TCGA-DK-A1AA TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
        7.04       118.88       100.47         7.17         5.85         6.64 
TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IS TCGA-DK-A3IT 
        7.76       123.85         7.82         8.22        37.84         5.52 
TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X2 
       11.51         9.67         8.28        10.55       131.15        17.98 
TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 
        0.10         8.81         8.94         6.87         4.01        11.05 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SP 
        8.94         7.96        24.30        10.98         6.12         4.54 
TCGA-FD-A3SR TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZE TCGA-FT-A3EE TCGA-G2-A2EJ 
       19.79         6.84        15.16         3.48         3.22        26.50 
TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE 
        5.65        26.93        32.78        17.26         7.04        20.12 
TCGA-G2-A3VY TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3WC 
        0.82         2.24         1.32         4.50         1.38         2.50 
TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R 
        7.69         2.10         3.12         6.38         7.56         3.22 
TCGA-GV-A3JV TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK 
        4.37         5.69         7.63         7.79         4.11         6.64 
TCGA-GV-A40E TCGA-H4-A2HO TCGA-K4-A3WS TCGA-K4-A3WU 
        6.38         1.51         8.71         3.42 

      18Q LOSS CNV 18Q LOSS WILD-TYPE 
              0.43               0.10 
      18Q LOSS CNV 18Q LOSS WILD-TYPE 
             75.32             131.15 
      18Q LOSS CNV 18Q LOSS WILD-TYPE 
              6.81               7.04 
[1] "0.4 - 75.3 (6.8)"  "0.1 - 131.2 (7.0)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV"       "18Q LOSS CNV" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV"       "18Q LOSS CNV" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
      "18Q LOSS CNV" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV"       "18Q LOSS CNV" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV"       "18Q LOSS CNV" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
      "18Q LOSS CNV" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV"       "18Q LOSS CNV" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV"       "18Q LOSS CNV" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
      "18Q LOSS CNV" 
[1] "hr=" "2.6"
D69V2, continuous
D69V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS CNV         13   22
  18Q LOSS WILD-TYPE   21   78
        clus
vv       18Q LOSS CNV 18Q LOSS WILD-TYPE
  FEMALE           13                 21
  MALE             22                 78
D69V4, continuous
D69V5, continuous
                    vv
clus                 M0 M1 MX
  18Q LOSS CNV       18  1 16
  18Q LOSS WILD-TYPE 59  4 35
D69V6, multiclass
    clus
vv   18Q LOSS CNV 18Q LOSS WILD-TYPE
  M0           18                 59
  M1            1                  4
  MX           16                 35
                    vv
clus                 N0 N1 N2 N3 NX
  18Q LOSS CNV       19  4  6  1  4
  18Q LOSS WILD-TYPE 56 10 21  4  6
D69V7, multiclass
D69V8, continuous
D69V9, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  18Q LOSS CNV             0       12         8       14
  18Q LOSS WILD-TYPE       1       24        36       34
D69V10, multiclass
           clus
vv          18Q LOSS CNV 18Q LOSS WILD-TYPE
  STAGE I              0                  1
  STAGE II            12                 24
  STAGE III            8                 36
  STAGE IV            14                 34

Clustering(70) Variable = 19p loss
D70V1, survival
                    sevent
clus2                 0  1
  19P LOSS CNV        6  3
  19P LOSS WILD-TYPE 87 31
      19P LOSS CNV 19P LOSS WILD-TYPE 
                 9                118 
      19P LOSS CNV 19P LOSS WILD-TYPE 
                 3                 31 
$`19P LOSS CNV`
TCGA-BT-A3PH TCGA-CU-A0YN TCGA-E5-A2PC TCGA-FD-A3SM TCGA-FD-A3SO TCGA-FD-A3SS 
        4.64        12.92        36.43         6.12         5.49         1.94 
TCGA-FJ-A3ZE TCGA-GU-A42P TCGA-H4-A2HQ 
        3.48         6.38         6.71 

$`19P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
       14.89         8.61         5.06         8.35         8.25         5.88 
TCGA-BT-A2LD TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS 
        3.65         8.98         1.94         2.01         0.46         0.43 
TCGA-CF-A27C TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL 
        0.69         4.90         7.20         5.46         5.19         8.09 
TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB 
        2.53         2.14        31.40         8.98         7.04         8.91 
TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX 
      118.88       100.47         7.17         5.85         6.64         1.81 
TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL 
       10.59         7.76       123.85        75.32         2.20         3.98 
TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU 
        7.82         8.22        10.49        37.84         5.52        11.51 
TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 
        9.67         8.28        10.55       131.15        41.03        17.98 
TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 
        0.10         8.81         8.32         8.94         6.87         4.01 
TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL 
       11.05         8.94         7.96        32.02        24.30        10.98 
TCGA-FD-A3SN TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A43N TCGA-FD-A43U 
        6.81         4.54        46.78        19.79         7.89         6.84 
TCGA-FJ-A3Z7 TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK 
       15.16         4.08         3.22        49.91        26.50         5.65 
TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY 
       26.93        32.78        17.26         7.04        20.12         0.82 
TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD 
        2.86         2.24         1.32         4.50         1.38         1.02 
TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS 
        2.50         1.08         7.69         2.10         3.12         5.82 
TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ 
        7.56         3.22         4.37         6.41         6.15         5.69 
TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G 
        7.63         7.79         4.11         6.64         6.38         5.33 
TCGA-H4-A2HO TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        1.51         8.71         3.42         4.64 

      19P LOSS CNV 19P LOSS WILD-TYPE 
              1.94               0.10 
      19P LOSS CNV 19P LOSS WILD-TYPE 
             36.43             131.15 
      19P LOSS CNV 19P LOSS WILD-TYPE 
             6.120              7.185 
[1] "1.9 - 36.4 (6.1)"  "0.1 - 131.2 (7.2)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
      "19P LOSS CNV" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"19P LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
      "19P LOSS CNV" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"19P LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
      "19P LOSS CNV" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"19P LOSS WILD-TYPE" 
[1] "hr=" "1.7"
D70V2, continuous
D70V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS CNV          2    7
  19P LOSS WILD-TYPE   32   93
        clus
vv       19P LOSS CNV 19P LOSS WILD-TYPE
  FEMALE            2                 32
  MALE              7                 93
D70V4, continuous
[1] "Remove cluster labels:" "19P LOSS CNV"          
clus
      19P LOSS CNV 19P LOSS WILD-TYPE 
                 1                 37 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CF-A3MF 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CF-A3MG         TCGA-CF-A3MH         TCGA-CF-A3MI 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A2HX         TCGA-DK-A3IN         TCGA-DK-A3IV 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A3WX         TCGA-DK-A3X2         TCGA-G2-A2EF 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-G2-A2EJ         TCGA-G2-A2EK         TCGA-G2-A2EL 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-G2-A2EO         TCGA-G2-A2ES         TCGA-G2-A3IB 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-G2-A3IE         TCGA-G2-A3VY         TCGA-GC-A3BM 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GC-A3I6         TCGA-GC-A3OO         TCGA-GC-A3RC 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3YS         TCGA-GD-A3OS 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GV-A3JV         TCGA-GV-A3JW         TCGA-GV-A3JX 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GV-A3JZ         TCGA-GV-A3QF         TCGA-GV-A3QH 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-GV-A3QK         TCGA-GV-A40E 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GV-A40G 
"19P LOSS WILD-TYPE" 
D70V5, continuous
                    vv
clus                 M0 M1 MX
  19P LOSS CNV        2  3  4
  19P LOSS WILD-TYPE 75  2 47
D70V6, multiclass
    clus
vv   19P LOSS CNV 19P LOSS WILD-TYPE
  M0            2                 75
  M1            3                  2
  MX            4                 47
                    vv
clus                 N0 N1 N2 N3 NX
  19P LOSS CNV        1  3  2  2  1
  19P LOSS WILD-TYPE 74 11 25  3  9
D70V7, multiclass
D70V8, continuous
D70V9, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  19P LOSS CNV             0        0         1        8
  19P LOSS WILD-TYPE       1       36        43       40
D70V10, multiclass
           clus
vv          19P LOSS CNV 19P LOSS WILD-TYPE
  STAGE I              0                  1
  STAGE II             0                 36
  STAGE III            1                 43
  STAGE IV             8                 40

Clustering(71) Variable = 19q loss
D71V1, survival
                    sevent
clus2                 0  1
  19Q LOSS CNV        1  3
  19Q LOSS WILD-TYPE 92 31
      19Q LOSS CNV 19Q LOSS WILD-TYPE 
                 4                123 
      19Q LOSS CNV 19Q LOSS WILD-TYPE 
                 3                 31 
$`19Q LOSS CNV`
TCGA-BT-A3PH TCGA-CU-A0YN TCGA-FD-A3SO TCGA-FJ-A3ZE 
        4.64        12.92         5.49         3.48 

$`19Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
       14.89         8.61         5.06         8.35         8.25         5.88 
TCGA-BT-A2LD TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS 
        3.65         8.98         1.94         2.01         0.46         0.43 
TCGA-CF-A27C TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL 
        0.69         4.90         7.20         5.46         5.19         8.09 
TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB 
        2.53         2.14        31.40         8.98         7.04         8.91 
TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX 
      118.88       100.47         7.17         5.85         6.64         1.81 
TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL 
       10.59         7.76       123.85        75.32         2.20         3.98 
TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU 
        7.82         8.22        10.49        37.84         5.52        11.51 
TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 
        9.67         8.28        10.55       131.15        41.03        17.98 
TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 
       36.43         0.10         8.81         8.32         8.94         6.87 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ 
        4.01        11.05         8.94         7.96        32.02        24.30 
TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR 
       10.98         6.12         6.81         4.54        46.78        19.79 
TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZF TCGA-FT-A3EE 
        1.94         7.89         6.84        15.16         4.08         3.22 
TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES 
       49.91        26.50         5.65        26.93        32.78        17.26 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO 
        7.04        20.12         0.82         2.86         2.24         1.32 
TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 
        4.50         1.38         1.02         2.50         1.08         7.69 
TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R 
        2.10         3.12         5.82         6.38         7.56         3.22 
TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH 
        4.37         6.41         6.15         5.69         7.63         7.79 
TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ 
        4.11         6.64         6.38         5.33         1.51         6.71 
TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        8.71         3.42         4.64 

      19Q LOSS CNV 19Q LOSS WILD-TYPE 
              3.48               0.10 
      19Q LOSS CNV 19Q LOSS WILD-TYPE 
             12.92             131.15 
      19Q LOSS CNV 19Q LOSS WILD-TYPE 
             5.065              7.040 
[1] "3.5 - 12.9 (5.1)"  "0.1 - 131.2 (7.0)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"19Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"19Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"19Q LOSS WILD-TYPE" 
[1] "hr=" "5.7"
D71V2, continuous
D71V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS CNV          0    4
  19Q LOSS WILD-TYPE   34   96
        clus
vv       19Q LOSS CNV 19Q LOSS WILD-TYPE
  FEMALE            0                 34
  MALE              4                 96
D71V4, continuous
D71V5, continuous
                    vv
clus                 M0 M1 MX
  19Q LOSS CNV        1  1  2
  19Q LOSS WILD-TYPE 76  4 49
D71V6, multiclass
    clus
vv   19Q LOSS CNV 19Q LOSS WILD-TYPE
  M0            1                 76
  M1            1                  4
  MX            2                 49
                    vv
clus                 N0 N1 N2 N3 NX
  19Q LOSS CNV        1  1  1  1  0
  19Q LOSS WILD-TYPE 74 13 26  4 10
D71V7, multiclass
D71V8, continuous
D71V9, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  19Q LOSS CNV             0        0         1        3
  19Q LOSS WILD-TYPE       1       36        43       45
D71V10, multiclass
           clus
vv          19Q LOSS CNV 19Q LOSS WILD-TYPE
  STAGE I              0                  1
  STAGE II             0                 36
  STAGE III            1                 43
  STAGE IV             3                 45

Clustering(72) Variable = 20p loss
D72V1, survival
                    sevent
clus2                 0  1
  20P LOSS CNV        5  1
  20P LOSS WILD-TYPE 88 33
      20P LOSS CNV 20P LOSS WILD-TYPE 
                 6                121 
      20P LOSS CNV 20P LOSS WILD-TYPE 
                 1                 33 
$`20P LOSS CNV`
TCGA-BT-A20P TCGA-DK-A1A3 TCGA-DK-A3IM TCGA-DK-A3X1 TCGA-G2-A3VY TCGA-GU-A42R 
       17.85         2.53         7.82        41.03         0.82         3.22 

$`20P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T 
       19.00        26.10        12.16        19.46         5.06        14.89 
TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD 
        8.61         5.06         8.35         8.25         5.88         3.65 
TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS 
        4.64         8.98         1.94         2.01         0.46         0.43 
TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU 
        0.69        12.92         4.90         7.20         5.46         5.19 
TCGA-CU-A3YL TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB 
        8.09         2.14        31.40         8.98         7.04         8.91 
TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX 
      118.88       100.47         7.17         5.85         6.64         1.81 
TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL 
       10.59         7.76       123.85        75.32         2.20         3.98 
TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV 
        8.22        10.49        37.84         5.52        11.51         9.67 
TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X2 TCGA-E5-A2PC TCGA-E7-A3Y1 
        8.28        10.55       131.15        17.98        36.43         0.10 
TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 
        8.81         8.32         8.94         6.87         4.01        11.05 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM 
        8.94         7.96        32.02        24.30        10.98         6.12 
TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS 
        6.81         5.49         4.54        46.78        19.79         1.94 
TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-FT-A3EE 
        7.89         6.84        15.16         3.48         4.08         3.22 
TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES 
       49.91        26.50         5.65        26.93        32.78        17.26 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB 
        7.04        20.12         2.86         2.24         1.32         4.50 
TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP 
        1.38         1.02         2.50         1.08         7.69         2.10 
TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q TCGA-GV-A3JV TCGA-GV-A3JW 
        3.12         5.82         6.38         7.56         4.37         6.41 
TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK 
        6.15         5.69         7.63         7.79         4.11         6.64 
TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU 
        6.38         5.33         1.51         6.71         8.71         3.42 
TCGA-K4-A3WV 
        4.64 

      20P LOSS CNV 20P LOSS WILD-TYPE 
              0.82               0.10 
      20P LOSS CNV 20P LOSS WILD-TYPE 
             41.03             131.15 
      20P LOSS CNV 20P LOSS WILD-TYPE 
              5.52               7.04 
[1] "0.8 - 41.0 (5.5)"  "0.1 - 131.2 (7.0)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
      "20P LOSS CNV" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
      "20P LOSS CNV" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
      "20P LOSS CNV" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
      "20P LOSS CNV" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"20P LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
      "20P LOSS CNV" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
      "20P LOSS CNV" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
      "20P LOSS CNV" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
      "20P LOSS CNV" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"20P LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
      "20P LOSS CNV" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
      "20P LOSS CNV" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
      "20P LOSS CNV" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
      "20P LOSS CNV" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"20P LOSS WILD-TYPE" 
[1] "hr=" "1.7"
D72V2, continuous
D72V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS CNV          2    4
  20P LOSS WILD-TYPE   32   96
        clus
vv       20P LOSS CNV 20P LOSS WILD-TYPE
  FEMALE            2                 32
  MALE              4                 96
D72V4, continuous
[1] "Remove cluster labels:" "20P LOSS CNV"          
clus
      20P LOSS CNV 20P LOSS WILD-TYPE 
                 1                 37 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CF-A3MF 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CF-A3MG         TCGA-CF-A3MH         TCGA-CF-A3MI 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A2HX         TCGA-DK-A3IN         TCGA-DK-A3IV 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A3WX         TCGA-DK-A3X2         TCGA-E5-A2PC 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3BM 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GC-A3I6         TCGA-GC-A3OO         TCGA-GC-A3RC 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3YS         TCGA-GD-A3OS 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GV-A3JV         TCGA-GV-A3JW         TCGA-GV-A3JX 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GV-A3JZ         TCGA-GV-A3QF         TCGA-GV-A3QH 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-GV-A3QK         TCGA-GV-A40E 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GV-A40G 
"20P LOSS WILD-TYPE" 
D72V5, continuous
                    vv
clus                 M0 M1 MX
  20P LOSS CNV        4  0  1
  20P LOSS WILD-TYPE 73  5 50
D72V6, multiclass
    clus
vv   20P LOSS CNV 20P LOSS WILD-TYPE
  M0            4                 73
  M1            0                  5
  MX            1                 50
                    vv
clus                 N0 N1 N2 N3 NX
  20P LOSS CNV        3  0  1  0  0
  20P LOSS WILD-TYPE 72 14 26  5 10
D72V7, multiclass
D72V8, continuous
D72V9, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  20P LOSS CNV             0        2         3        1
  20P LOSS WILD-TYPE       1       34        41       47
D72V10, multiclass
           clus
vv          20P LOSS CNV 20P LOSS WILD-TYPE
  STAGE I              0                  1
  STAGE II             2                 34
  STAGE III            3                 41
  STAGE IV             1                 47

Clustering(73) Variable = 21q loss
D73V1, survival
                    sevent
clus2                 0  1
  21Q LOSS CNV        9  4
  21Q LOSS WILD-TYPE 84 30
      21Q LOSS CNV 21Q LOSS WILD-TYPE 
                13                114 
      21Q LOSS CNV 21Q LOSS WILD-TYPE 
                 4                 30 
$`21Q LOSS CNV`
TCGA-BT-A20V TCGA-BT-A20X TCGA-CF-A1HR TCGA-CU-A3QU TCGA-DK-A3IN TCGA-DK-A3IT 
        5.06         8.25         0.46         5.19         8.22         5.52 
TCGA-E5-A2PC TCGA-FD-A3SL TCGA-FD-A3SO TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-GV-A3JV 
       36.43        10.98         5.49        49.91        26.50         4.37 
TCGA-GV-A3QI 
        4.11 

$`21Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH 
       14.89         8.61         8.35         5.88         3.65         4.64 
TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN 
        8.98         1.94         2.01         0.43         0.69        12.92 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 
        4.90         7.20         5.46         8.09         2.53         2.14 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD 
       31.40         8.98         7.04         8.91       118.88       100.47 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 
        7.17         5.85         6.64         1.81        10.59         7.76 
TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IQ 
      123.85        75.32         2.20         3.98         7.82        10.49 
TCGA-DK-A3IS TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY 
       37.84        11.51         9.67         8.28        10.55       131.15 
TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 
       41.03        17.98         0.10         8.81         8.32         8.94 
TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA 
        6.87         4.01        11.05         8.94         7.96        32.02 
TCGA-FD-A3SJ TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR 
       24.30         6.12         6.81         4.54        46.78        19.79 
TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZE TCGA-FJ-A3ZF 
        1.94         7.89         6.84        15.16         3.48         4.08 
TCGA-FT-A3EE TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB 
        3.22         5.65        26.93        32.78        17.26         7.04 
TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB 
       20.12         0.82         2.86         2.24         1.32         4.50 
TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP 
        1.38         1.02         2.50         1.08         7.69         2.10 
TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JW 
        3.12         5.82         6.38         7.56         3.22         6.41 
TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QK TCGA-GV-A40E 
        6.15         5.69         7.63         7.79         6.64         6.38 
TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        5.33         1.51         6.71         8.71         3.42         4.64 

      21Q LOSS CNV 21Q LOSS WILD-TYPE 
              0.46               0.10 
      21Q LOSS CNV 21Q LOSS WILD-TYPE 
             49.91             131.15 
      21Q LOSS CNV 21Q LOSS WILD-TYPE 
              5.52               7.04 
[1] "0.5 - 49.9 (5.5)"  "0.1 - 131.2 (7.0)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV"       "21Q LOSS CNV" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"21Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV"       "21Q LOSS CNV" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"21Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV"       "21Q LOSS CNV" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"21Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D73V2, continuous
D73V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS CNV          3   10
  21Q LOSS WILD-TYPE   31   90
        clus
vv       21Q LOSS CNV 21Q LOSS WILD-TYPE
  FEMALE            3                 31
  MALE             10                 90
D73V4, continuous
D73V5, continuous
                    vv
clus                 M0 M1 MX
  21Q LOSS CNV        8  1  4
  21Q LOSS WILD-TYPE 69  4 47
D73V6, multiclass
    clus
vv   21Q LOSS CNV 21Q LOSS WILD-TYPE
  M0            8                 69
  M1            1                  4
  MX            4                 47
                    vv
clus                 N0 N1 N2 N3 NX
  21Q LOSS CNV        6  4  3  0  0
  21Q LOSS WILD-TYPE 69 10 24  5 10
D73V7, multiclass
D73V8, continuous
D73V9, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  21Q LOSS CNV             0        2         3        7
  21Q LOSS WILD-TYPE       1       34        41       41
D73V10, multiclass
           clus
vv          21Q LOSS CNV 21Q LOSS WILD-TYPE
  STAGE I              0                  1
  STAGE II             2                 34
  STAGE III            3                 41
  STAGE IV             7                 41

Clustering(74) Variable = 22q loss
D74V1, survival
                    sevent
clus2                 0  1
  22Q LOSS CNV       15 11
  22Q LOSS WILD-TYPE 78 23
      22Q LOSS CNV 22Q LOSS WILD-TYPE 
                26                101 
      22Q LOSS CNV 22Q LOSS WILD-TYPE 
                11                 23 
$`22Q LOSS CNV`
TCGA-BT-A20J TCGA-BT-A20R TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-CU-A0YN TCGA-CU-A3KJ 
       19.00         5.06         8.98         1.94        12.92         5.46 
TCGA-CU-A3QU TCGA-DK-A2HX TCGA-DK-A2I2 TCGA-DK-A3IQ TCGA-DK-A3IV TCGA-DK-A3X2 
        5.19         1.81         7.76        10.49         9.67        17.98 
TCGA-E5-A2PC TCGA-FD-A3B4 TCGA-FD-A3B6 TCGA-FD-A3N5 TCGA-FD-A3SJ TCGA-FD-A3SN 
       36.43         8.32         6.87         8.94        24.30         6.81 
TCGA-FD-A3SO TCGA-FD-A3SR TCGA-FJ-A3ZF TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3RC 
        5.49        19.79         4.08        20.12         0.82         1.38 
TCGA-GV-A3JX TCGA-H4-A2HQ 
        6.15         6.71 

$`22Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20T TCGA-BT-A20U 
       26.10        12.16        17.85        19.46        14.89         8.61 
TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH 
        5.06         8.35         8.25         5.88         3.65         4.64 
TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YO TCGA-CU-A0YR 
        2.01         0.46         0.43         0.69         4.90         7.20 
TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA 
        8.09         2.53         2.14        31.40         8.98         7.04 
TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
        8.91       118.88       100.47         7.17         5.85         6.64 
TCGA-DK-A2I1 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM 
       10.59       123.85        75.32         2.20         3.98         7.82 
TCGA-DK-A3IN TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3WW TCGA-DK-A3WX 
        8.22        37.84         5.52        11.51         8.28        10.55 
TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B5 TCGA-FD-A3B7 
      131.15        41.03         0.10         8.81         8.94         4.01 
TCGA-FD-A3B8 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SP 
       11.05         7.96        32.02        10.98         6.12         4.54 
TCGA-FD-A3SQ TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 TCGA-FJ-A3ZE 
       46.78         1.94         7.89         6.84        15.16         3.48 
TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
        3.22        49.91        26.50         5.65        26.93        32.78 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB 
       17.26         7.04         2.86         2.24         1.32         4.50 
TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ 
        1.02         2.50         1.08         7.69         2.10         3.12 
TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW 
        5.82         6.38         7.56         3.22         4.37         6.41 
TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E 
        5.69         7.63         7.79         4.11         6.64         6.38 
TCGA-GV-A40G TCGA-H4-A2HO TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        5.33         1.51         8.71         3.42         4.64 

      22Q LOSS CNV 22Q LOSS WILD-TYPE 
              0.82               0.10 
      22Q LOSS CNV 22Q LOSS WILD-TYPE 
             36.43             131.15 
      22Q LOSS CNV 22Q LOSS WILD-TYPE 
             7.315              7.040 
[1] "0.8 - 36.4 (7.3)"  "0.1 - 131.2 (7.0)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"22Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"22Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-CU-A3QU         TCGA-CU-A3YL         TCGA-DK-A1A3 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-E5-A2PC 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-E7-A3Y1         TCGA-FD-A3B3         TCGA-FD-A3B4 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43U 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3ZE         TCGA-FJ-A3ZF 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-FT-A3EE         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-G2-A3VY         TCGA-GC-A3BM         TCGA-GC-A3I6 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GC-A3OO         TCGA-GC-A3RB         TCGA-GC-A3RC 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-GC-A3RD         TCGA-GC-A3WC         TCGA-GC-A3YS 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GU-A42P         TCGA-GU-A42Q 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV 
"22Q LOSS WILD-TYPE" 
[1] "hr=" "1.8"
D74V2, continuous
D74V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS CNV          7   19
  22Q LOSS WILD-TYPE   27   81
        clus
vv       22Q LOSS CNV 22Q LOSS WILD-TYPE
  FEMALE            7                 27
  MALE             19                 81
D74V4, continuous
D74V5, continuous
                    vv
clus                 M0 M1 MX
  22Q LOSS CNV       12  2 11
  22Q LOSS WILD-TYPE 65  3 40
D74V6, multiclass
    clus
vv   22Q LOSS CNV 22Q LOSS WILD-TYPE
  M0           12                 65
  M1            2                  3
  MX           11                 40
                    vv
clus                 N0 N1 N2 N3 NX
  22Q LOSS CNV       12  5  4  1  3
  22Q LOSS WILD-TYPE 63  9 23  4  7
D74V7, multiclass
D74V8, continuous
D74V9, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  22Q LOSS CNV             0        8         6       12
  22Q LOSS WILD-TYPE       1       28        38       36
D74V10, multiclass
           clus
vv          22Q LOSS CNV 22Q LOSS WILD-TYPE
  STAGE I              0                  1
  STAGE II             8                 28
  STAGE III            6                 38
  STAGE IV            12                 36

Clustering(75) Variable = Xq loss
D75V1, survival
                   sevent
clus2                0  1
  XQ LOSS CNV        2  1
  XQ LOSS WILD-TYPE 91 33
      XQ LOSS CNV XQ LOSS WILD-TYPE 
                3               124 
      XQ LOSS CNV XQ LOSS WILD-TYPE 
                1                33 
$`XQ LOSS CNV`
TCGA-DK-A3IV TCGA-GU-A42R TCGA-K4-A3WV 
        9.67         3.22         4.64 

$`XQ LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
       14.89         8.61         5.06         8.35         8.25         5.88 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR 
        3.65         4.64         8.98         1.94         2.01         0.46 
TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ 
        0.43         0.69        12.92         4.90         7.20         5.46 
TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 
        5.19         8.09         2.53         2.14        31.40         8.98 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF 
        7.04         8.91       118.88       100.47         7.17         5.85 
TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 
        6.64         1.81        10.59         7.76       123.85        75.32 
TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS 
        2.20         3.98         7.82         8.22        10.49        37.84 
TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 
        5.52        11.51         8.28        10.55       131.15        41.03 
TCGA-DK-A3X2 TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 
       17.98        36.43         0.10         8.81         8.32         8.94 
TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA 
        6.87         4.01        11.05         8.94         7.96        32.02 
TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP 
       24.30        10.98         6.12         6.81         5.49         4.54 
TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U TCGA-FJ-A3Z7 
       46.78        19.79         1.94         7.89         6.84        15.16 
TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK 
        3.48         4.08         3.22        49.91        26.50         5.65 
TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY 
       26.93        32.78        17.26         7.04        20.12         0.82 
TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD 
        2.86         2.24         1.32         4.50         1.38         1.02 
TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS 
        2.50         1.08         7.69         2.10         3.12         5.82 
TCGA-GU-A42P TCGA-GU-A42Q TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ 
        6.38         7.56         4.37         6.41         6.15         5.69 
TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G 
        7.63         7.79         4.11         6.64         6.38         5.33 
TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU 
        1.51         6.71         8.71         3.42 

      XQ LOSS CNV XQ LOSS WILD-TYPE 
             3.22              0.10 
      XQ LOSS CNV XQ LOSS WILD-TYPE 
             9.67            131.15 
      XQ LOSS CNV XQ LOSS WILD-TYPE 
             4.64              7.04 
[1] "3.2 - 9.7 (4.6)"   "0.1 - 131.2 (7.0)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-E7-A3Y1 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A3SN        TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A3SR        TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-G2-A2EF        TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-G2-A2EO        TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-G2-A3VY        TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GC-A3RB        TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GD-A3OS        TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GV-A40E        TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-K4-A3WS        TCGA-K4-A3WU        TCGA-K4-A3WV 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
[1] "hr=" "2.6"
D75V2, continuous
D75V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS CNV          1    2
  XQ LOSS WILD-TYPE   33   98
        clus
vv       XQ LOSS CNV XQ LOSS WILD-TYPE
  FEMALE           1                33
  MALE             2                98
D75V4, continuous
[1] "Remove cluster labels:" "XQ LOSS CNV"           
clus
      XQ LOSS CNV XQ LOSS WILD-TYPE 
                1                37 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A3MF        TCGA-CF-A3MG 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CF-A3MH        TCGA-CF-A3MI        TCGA-DK-A2HX        TCGA-DK-A3IN 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A3WX        TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-G2-A2EF 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RC 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3YS        TCGA-GD-A3OS        TCGA-GV-A3JV 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GV-A40G 
"XQ LOSS WILD-TYPE" 
D75V5, continuous
                   vv
clus                M0 M1 MX
  XQ LOSS CNV        1  0  2
  XQ LOSS WILD-TYPE 76  5 49
D75V6, multiclass
    clus
vv   XQ LOSS CNV XQ LOSS WILD-TYPE
  M0           1                76
  M1           0                 5
  MX           2                49
                   vv
clus                N0 N1 N2 N3 NX
  XQ LOSS CNV        1  0  0  0  1
  XQ LOSS WILD-TYPE 74 14 27  5  9
D75V7, multiclass
[1] "Remove cluster labels:" "XQ LOSS CNV"           
clus
      XQ LOSS CNV XQ LOSS WILD-TYPE 
                2               129 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A3MF        TCGA-CF-A3MG 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CF-A3MH        TCGA-CF-A3MI        TCGA-CU-A0YN        TCGA-CU-A0YO 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6        TCGA-DK-A3IK 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN        TCGA-DK-A3IQ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU        TCGA-DK-A3WW 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A3WX        TCGA-DK-A3WY        TCGA-DK-A3X1        TCGA-DK-A3X2 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-FD-A3B3 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A3B4        TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A3B8        TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A3SJ        TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A3SO        TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A3SS        TCGA-FD-A43N        TCGA-FD-A43U        TCGA-FJ-A3Z7 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FJ-A3ZE        TCGA-FJ-A3ZF        TCGA-FT-A3EE        TCGA-G2-A2EF 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3BM 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GU-A42P 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GU-A42Q        TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GV-A3JZ        TCGA-GV-A3QF        TCGA-GV-A3QG        TCGA-GV-A3QH 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E        TCGA-GV-A40G 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-HQ-A2OE        TCGA-K4-A3WS 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-K4-A3WU 
"XQ LOSS WILD-TYPE" 
D75V8, continuous
[1] "Remove cluster labels:" "XQ LOSS CNV"           
clus
      XQ LOSS CNV XQ LOSS WILD-TYPE 
                1                99 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20T 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BT-A20V        TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-CU-A0YN        TCGA-CU-A0YO 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY        TCGA-DK-A3X1 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A3X2        TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43U        TCGA-FJ-A3Z7        TCGA-FT-A3EE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GC-A3BM        TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GC-A3RC        TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GU-A42P 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GU-A42Q        TCGA-GV-A3JV        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GV-A3QF        TCGA-GV-A3QG        TCGA-GV-A3QI        TCGA-GV-A3QK 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-K4-A3WS 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
D75V9, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  XQ LOSS CNV             0        3         0        0
  XQ LOSS WILD-TYPE       1       33        44       48
D75V10, multiclass
           clus
vv          XQ LOSS CNV XQ LOSS WILD-TYPE
  STAGE I             0                 1
  STAGE II            3                33
  STAGE III           0                44
  STAGE IV            0                48
                         V1.D                            V2 
              "Time to Death"                         "AGE" 
                           V3                            V4 
                     "GENDER" "KARNOFSKY.PERFORMANCE.SCORE" 
                           V5                            V6 
      "NUMBERPACKYEARSSMOKED"          "DISTANT.METASTASIS" 
                           V7                            V8 
      "LYMPH.NODE.METASTASIS"       "NUMBER.OF.LYMPH.NODES" 
                           V9                           V10 
            "TUMOR.STAGECODE"       "NEOPLASM.DISEASESTAGE" 
> q(save="no")
