WARNING: the dataset is not col-normalized (recommended with Pearson correlation)
min sampled: 9
max sampled: 20
avg sampled: 15.965293
19 14 16 16 13 15 15 15 15 13 15 17 20 16 17 18 17 17 16 13 17 17 17 17 15 17 17 16 14 19 14 16 17 16 16 15 16 17 17 15 18 16 14 15 17 15 16 16 17 16 17 19 16 16 13 18 17 17 16 15 16 16 16 18 15 17 18 16 16 16 15 17 15 17 17 18 18 14 15 17 12 16 15 17 11 17 13 18 15 16 18 16 17 17 15 18 17 17 15 12 19 15 18 18 17 16 11 15 13 16 14 15 13 14 13 13 14 16 18 17 18 18 17 16 14 11 16 16 16 13 16 17 16 17 15 17 17 16 18 18 16 17 18 17 13 13 15 18 17 17 17 14 16 16 16 14 17 16 14 14 14 15 14 17 15 16 17 18 16 18 15 16 15 13 15 16 16 14 15 15 15 15 18 16 15 16 16 14 15 15 15 18 15 14 16 18 15 19 17 15 15 19 16 15 17 16 17 16 17 10 17 14 15 13 15 17 16 16 15 15 17 19 16 18 18 16 16 16 15 18 17 16 15 12 19 20 12 16 18 18 15 15 16 13 16 15 17 17 17 13 15 16 17 15 17 15 15 13 18 14 17 14 18 15 13 17 16 16 14 16 18 12 18 19 16 17 17 15 15 14 16 9 16 17 19 16 18 17 16 14 12 16 16 17 15 14 18 16 20 16 16 16 13 18 18 15 13 16 19 18 18 16 15 18 15 19 16 18 17 16 16 17 18 14 16 15 14 17 17 19 16 16 16 15 17 14 16 17 17 14 14 19 19 16 15 16 15 16 16 17 17 15 17 17 14 18 16 17 17 15 16 14 14 15 17 16 17 18 18 18 18 16 17 14 18 16 18 16 16 15 17 15 14 16 15 14 12 14 17 17 17 17 19 18 15 18 16 17 18 17 18 15 17 19 15 19 18 17 17 15 15 17 17 17 15 15 17 16 17 15 15 18 16 14 13 17 17 15 16 16 19 14 17 12 15 16 14 16 13 17 15 15 17 16 15 17 18 14 17 17 13 15 18 15 12 16 17 16 18 13 17 Number of clusters distribution:
Num	Count
1	0
2	20
3	20
4	20
5	20
6	20
7	20
8	20
Reading consensus matrices from files ..

	processing file 'outputprefix.expclu.sub368.2.gct' ..

	processing file 'outputprefix.expclu.sub368.3.gct' ..

	processing file 'outputprefix.expclu.sub368.4.gct' ..

	processing file 'outputprefix.expclu.sub368.5.gct' ..

	processing file 'outputprefix.expclu.sub368.6.gct' ..

	processing file 'outputprefix.expclu.sub368.7.gct' ..

	processing file 'outputprefix.expclu.sub368.8.gct' ..

Plotting statistics to 'outputprefix.expclu.sub368.statistics.pdf' .. 

	Lorenz curve .. done.

	Gini..done.

	Consensus distribution .. done.

	CDF area .. done.

lsf stdout
Sender: LSF System <lsf@node1543>
Subject: Job 5271526: </broad/software/free/Linux/redhat_5_x86_64/pkgs/sun-java-jdk_1.6.0-21_x86_64/bin/java -Xmx512m -DR=/xchip/genepattern/R-2.5.0 -cp /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Acme.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-modules.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/broad-cg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/geneweaver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/RunSomAlg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/jaxb-rt-1.0-ea.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/file_support.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/archiver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/trove.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-common.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Jama-1.0.1.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/cc.jar edu.mit.broad.modules.cc.CC /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/415773/outputprefix.expclu.gct 8 20 -N 0 -@12345 -S subsample -t HIERARCHICAL -D PEARSON -L average -i 2000 -o outputprefix.expclu -s -d -p -z 2 -l0 -v0 -b/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/ >> cmd.out> in cluster cgalsf Done

Job </broad/software/free/Linux/redhat_5_x86_64/pkgs/sun-java-jdk_1.6.0-21_x86_64/bin/java -Xmx512m -DR=/xchip/genepattern/R-2.5.0 -cp /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Acme.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-modules.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/broad-cg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/geneweaver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/RunSomAlg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/jaxb-rt-1.0-ea.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/file_support.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/archiver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/trove.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-common.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Jama-1.0.1.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/cc.jar edu.mit.broad.modules.cc.CC /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/415773/outputprefix.expclu.gct 8 20 -N 0 -@12345 -S subsample -t HIERARCHICAL -D PEARSON -L average -i 2000 -o outputprefix.expclu -s -d -p -z 2 -l0 -v0 -b/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/ >> cmd.out> was submitted from host <node1417> by user <cgaadm> in cluster <cgalsf>.
Job was executed on host(s) <node1543>, in queue <cga>, as user <cgaadm> in cluster <cgalsf>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/415774> was used as the working directory.
Started at Thu Jun  6 10:48:38 2013
Results reported at Thu Jun  6 10:54:27 2013

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
/broad/software/free/Linux/redhat_5_x86_64/pkgs/sun-java-jdk_1.6.0-21_x86_64/bin/java -Xmx512m -DR=/xchip/genepattern/R-2.5.0 -cp /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Acme.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-modules.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/broad-cg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/geneweaver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/RunSomAlg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/jaxb-rt-1.0-ea.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/file_support.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/archiver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/trove.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-common.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Jama-1.0.1.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/cc.jar edu.mit.broad.modules.cc.CC /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/415773/outputprefix.expclu.gct 8 20 -N 0 -@12345 -S subsample -t HIERARCHICAL -D PEARSON -L average -i 2000 -o outputprefix.expclu -s -d -p -z 2 -l0 -v0 -b/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/ >> cmd.out
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    354.58 sec.
    Max Memory :       365 MB
    Max Swap   :      1015 MB

    Max Processes  :         4
    Max Threads    :        27

The output (if any) follows:



PS:

Read file <.lsf.err> for stderr output of this job.

lsf stderr
